Sodium-dependent glucose transporter 1 isoform 2

Overview
NameSodium-dependent glucose transporter 1 isoform 2
Smed IDSMED30006960
Length (bp)1499
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Sodium-dependent glucose transporter 1 isoform 2 (SMED30006960) t-SNE clustered cells

Violin plots show distribution of expression levels for Sodium-dependent glucose transporter 1 isoform 2 (SMED30006960) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Sodium-dependent glucose transporter 1 isoform 2 (SMED30006960) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Sodium-dependent glucose transporter 1 isoform 2 (SMED30006960) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30006960

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 8

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30006960SMESG000029912.1 SMESG000029913.1 SmedASXL_012533SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
cephalic gangliaSMED30006960SMESG000029912.1 SMESG000029913.1 dd_Smed_v4_5057_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parapharyngeal regionSMED30006960SMESG000029912.1 SMESG000029913.1 dd_Smed_v4_5057_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30006960SMESG000029912.1 SMESG000029913.1 dd_Smed_v4_5057_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30006960SMESG000029912.1 SMESG000029911.1 Contig16256newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30006960SMESG000029912.1 SMESG000029911.1 Contig16256uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
head regionSMED30006960SMESG000029912.1 SMESG000029913.1 dd_Smed_v6_5057_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
secretory systemSMED30006960SMESG000029912.1 SMESG000029913.1 dd_Smed_v6_5057_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Sodium-dependent glucose transporter 1 isoform 2 vs. TrEMBL
Match: A0A4S2LI93 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_007041 PE=4 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.941e-36
Identity = 78/183 (42.62%), Postives = 113/183 (61.75%), Query Frame = 1 
Query:  172 NEEELQKLAKSMPFVDLDVAMHHRLITRDPICGIGNLPKEIDLLQGHCLRPRSRSNVTTPVRDPILLEGNFGGEYNCLYTTKDLKCKDRDDRNIITLEGDLGIELDPVRPHGGRPRSSIKVEAVRNPITGTGEFTKEWDPIWKYEGRQYFKRPEQIKRDPVTHSVPPENMGDFEPKFHLKHYN 720
            +EE  ++L +++P++++   + +R++  DP+ G+G L  E + L G+ +   SR  +    RD I LEG  G EYNCLYTTK+L C+ R++R+ ITL G+LG ELDP RPHGG PR+ +     R+PI GTGEF +EWDPI+KY GR           DP+TH++   N   F+     K YN
Sbjct:   24 SEEGKRELERNLPYLNIATGLENRMVLSDPVTGLGILSDEWNPLSGNHI---SRKPLVQ--RDLIKLEGERGQEYNCLYTTKELTCRPRENRDPITLTGELGEELDPFRPHGGHPRNRMDTAPKRDPIAGTGEFGREWDPIYKYNGRSRSSHVNTAPTDPITHNLSGSN---FQTNHMRKQYN 198
[Close]
BLAST of Sodium-dependent glucose transporter 1 isoform 2 vs. TrEMBL
Match: A0A4S2LPN7 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_007041 PE=4 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.588e-36
Identity = 78/183 (42.62%), Postives = 113/183 (61.75%), Query Frame = 1 
Query:  172 NEEELQKLAKSMPFVDLDVAMHHRLITRDPICGIGNLPKEIDLLQGHCLRPRSRSNVTTPVRDPILLEGNFGGEYNCLYTTKDLKCKDRDDRNIITLEGDLGIELDPVRPHGGRPRSSIKVEAVRNPITGTGEFTKEWDPIWKYEGRQYFKRPEQIKRDPVTHSVPPENMGDFEPKFHLKHYN 720
            +EE  ++L +++P++++   + +R++  DP+ G+G L  E + L G+ +   SR  +    RD I LEG  G EYNCLYTTK+L C+ R++R+ ITL G+LG ELDP RPHGG PR+ +     R+PI GTGEF +EWDPI+KY GR           DP+TH++   N   F+     K YN
Sbjct:   24 SEEGKRELERNLPYLNIATGLENRMVLSDPVTGLGILSDEWNPLSGNHI---SRKPLVQ--RDLIKLEGERGQEYNCLYTTKELTCRPRENRDPITLTGELGEELDPFRPHGGHPRNRMDTAPKRDPIAGTGEFGREWDPIYKYNGRSRSSHVNTAPTDPITHNLSGSN---FQTNHMRKQYN 198
[Close]
BLAST of Sodium-dependent glucose transporter 1 isoform 2 vs. TrEMBL
Match: G4VH63 (Putative surface protein PspC OS=Schistosoma mansoni OX=6183 GN=Smp_055220.3 PE=4 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.569e-34
Identity = 113/350 (32.29%), Postives = 173/350 (49.43%), Query Frame = 1 
Query:  160 YDLDNEEELQKLAKSMPFVDLDVAMHHRLITRDPICGIGNLPKEIDLLQGHCLRPRSRSNVTTPVRDPILLEGNFGGEYNCLYTTKDLKCKDRDDRNIITLEGDLGIELDPVRPHGGRPRSSI--KVEAVRN-PITGTGEFTKEWDPIWKYEGRQ----YFKRPEQIKRDPVTHSVPPENMGDFEPKFHLKHYNNQKSTDIISHDCAVQDLRDSDNFSNMRIRHHSQHDCR----NPITHETKLGISNDK-------PWRAGTKHFPDRIKNDNPIAHH--GFTDDIEERKEKEQQSRLERENAMT-----------------RDPISGTGFQEKETMQLWHCPNDYPFR 1098
            +D   +E L+ L K +P+++ +  + +R+ITRDP+ G+G+L  E + L G  LR R       P RDPI +EG+ G EYNCLYTTK+L CKDR +R+ ITL+GDLG ELD  RPHGGRPR+ I   +   R+  I+G  E+  E + +  Y  RQ      +R   +  DP+THS+P   +   +    ++HY    +T    HD      R S ++   ++R      C     +P+TH  +L I + +        + A    F     N NPI H     + D    +  ++ S +   N +T                 R+PI+G G  + + + L   P++Y FR
Sbjct:   43 HDRYQDEGLRLLEKYLPYLNPETGLRNRMITRDPVTGLGDLEAEWNPLNGCHLRRRH-----FPHRDPIRMEGDMGTEYNCLYTTKELTCKDRVNRDPITLQGDLGEELDMFRPHGGRPRNKIDRNIHVSRSDSISGRCEYNVENNSVNHYNERQCNEENSRRYSYLATDPITHSLPETKLVRSQ---SVRHYKEAWAT----HDPIGYMHRTSTSYKTDKVRGMKHFPCNKNSDDPVTH--RLSIDHHRQQHRPQLTYTASKSRFNTLRANTNPITHQQKNISSDQSPIELNDETSTIGDFNEVTIGNVSAVPENRKLRRALRNPITGEGMCDSDYIDLLKLPSEYYFR 378
[Close]
BLAST of Sodium-dependent glucose transporter 1 isoform 2 vs. TrEMBL
Match: A0A3Q0KG58 (Putative surface protein PspC OS=Schistosoma mansoni OX=6183 PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 4.103e-34
Identity = 113/350 (32.29%), Postives = 173/350 (49.43%), Query Frame = 1 
Query:  160 YDLDNEEELQKLAKSMPFVDLDVAMHHRLITRDPICGIGNLPKEIDLLQGHCLRPRSRSNVTTPVRDPILLEGNFGGEYNCLYTTKDLKCKDRDDRNIITLEGDLGIELDPVRPHGGRPRSSI--KVEAVRN-PITGTGEFTKEWDPIWKYEGRQ----YFKRPEQIKRDPVTHSVPPENMGDFEPKFHLKHYNNQKSTDIISHDCAVQDLRDSDNFSNMRIRHHSQHDCR----NPITHETKLGISNDK-------PWRAGTKHFPDRIKNDNPIAHH--GFTDDIEERKEKEQQSRLERENAMT-----------------RDPISGTGFQEKETMQLWHCPNDYPFR 1098
            +D   +E L+ L K +P+++ +  + +R+ITRDP+ G+G+L  E + L G  LR R       P RDPI +EG+ G EYNCLYTTK+L CKDR +R+ ITL+GDLG ELD  RPHGGRPR+ I   +   R+  I+G  E+  E + +  Y  RQ      +R   +  DP+THS+P   +   +    ++HY    +T    HD      R S ++   ++R      C     +P+TH  +L I + +        + A    F     N NPI H     + D    +  ++ S +   N +T                 R+PI+G G  + + + L   P++Y FR
Sbjct:   22 HDRYQDEGLRLLEKYLPYLNPETGLRNRMITRDPVTGLGDLEAEWNPLNGCHLRRRH-----FPHRDPIRMEGDMGTEYNCLYTTKELTCKDRVNRDPITLQGDLGEELDMFRPHGGRPRNKIDRNIHVSRSDSISGRCEYNVENNSVNHYNERQCNEENSRRYSYLATDPITHSLPETKLVRSQ---SVRHYKEAWAT----HDPIGYMHRTSTSYKTDKVRGMKHFPCNKNSDDPVTH--RLSIDHHRQQHRPQLTYTASKSRFNTLRANTNPITHQQKNISSDQSPIELNDETSTIGDFNEVTIGNVSAVPENRKLRRALRNPITGEGMCDSDYIDLLKLPSEYYFR 357
[Close]
BLAST of Sodium-dependent glucose transporter 1 isoform 2 vs. TrEMBL
Match: A0A4E0RGR5 (Uncharacterized protein OS=Fasciola hepatica OX=6192 GN=D915_002951 PE=4 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 6.275e-34
Identity = 112/337 (33.23%), Postives = 159/337 (47.18%), Query Frame = 1 
Query:   97 MPVRTYNERTLGFPHDLAYQGYDLDNEEELQKLAKSMPFVDLDVAMHHRLITRDPICGIGNLPKEID-LLQGHCLRPRSRSNVTTPVRDPILLEGNFGGEYNCLYTTKDLKCKDRDDRNIITLEGDLGIELDPVRPHGGRP-RSSIKVEAVRNPITGTGEFTKEWDPIWKYEGRQYFKRPEQIKRDPVTHSVPPENMGDFEPKFHLKHYNNQ-KSTDIISHDCAVQDLRDSDNFSNMRIRHHSQHDCRNPITHETKLGISNDKPWRAGTKHFPDRIKNDNPIAHHGFTDDIEERKEKEQQSRLERENAMTRDPISGTGFQEKETMQLWHCPNDYPFR 1098
            +P   Y E T G  HD           + ++ L K++PF++    +H+R+I RDPI G+G LP E D   +GH  R       T P RDPI +EG+ GGEYNCLYTTK+LKCK R+DR+ I L+GDLG ELDP  P G    R   +    R+PI GTG+F+ E DP      R  F R  + + DP+THS P     +   +  ++ YN +    D I H    ++ +     + M  RH +Q                     RAG        KN +  ++ G T                R   + R+PI+G G + ++   L   P++Y FR
Sbjct:   12 VPRSIYCEYTYGRYHD-----------DGVRSLEKNLPFLNPSTGLHNRMIIRDPITGLGELPAEWDPFREGHIDR------KTQPKRDPIRMEGDLGGEYNCLYTTKELKCKPREDRDPIRLKGDLGKELDPFNPDGSASFRRRSERTPRRDPILGTGDFSSEPDPFPHLNSRGRFYRQSKERTDPITHSFPERGARN---RHSMRQYNERWIMRDPILHRYGDENGQPVQRLNEM--RHFAQQ--------------------RAGNSWLSSSAKNLS--SNDGST----------------RRPYVQRNPITGEGMRPEDYNDLQRVPSEYHFR 288
[Close]
BLAST of Sodium-dependent glucose transporter 1 isoform 2 vs. Planmine SMEST
Match: SMESG000029912.1 (SMESG000029912.1)

HSP 1 Score: 734.947 bits (1896), Expect = 0.000e+0
Identity = 351/352 (99.72%), Postives = 352/352 (100.00%), Query Frame = 1 
Query:   97 MPVRTYNERTLGFPHDLAYQGYDLDNEEELQKLAKSMPFVDLDVAMHHRLITRDPICGIGNLPKEIDLLQGHCLRPRSRSNVTTPVRDPILLEGNFGGEYNCLYTTKDLKCKDRDDRNIITLEGDLGIELDPVRPHGGRPRSSIKVEAVRNPITGTGEFTKEWDPIWKYEGRQYFKRPEQIKRDPVTHSVPPENMGDFEPKFHLKHYNNQKSTDIISHDCAVQDLRDSDNFSNMRIRHHSQHDCRNPITHETKLGISNDKPWRAGTKHFPDRIKNDNPIAHHGFTDDIEERKEKEQQSRLERENAMTRDPISGTGFQEKETMQLWHCPNDYPFRSFLKAKSGKPEEQAKQPA 1152
            MPVRTYNERTLGFPHDLAYQGYDLDNEEELQKLAKSMPFVDLDVAMHHRLITRDPICGIGNLPKEIDLLQGHCLRPRSRSNVTTPVRDPILLEG+FGGEYNCLYTTKDLKCKDRDDRNIITLEGDLGIELDPVRPHGGRPRSSIKVEAVRNPITGTGEFTKEWDPIWKYEGRQYFKRPEQIKRDPVTHSVPPENMGDFEPKFHLKHYNNQKSTDIISHDCAVQDLRDSDNFSNMRIRHHSQHDCRNPITHETKLGISNDKPWRAGTKHFPDRIKNDNPIAHHGFTDDIEERKEKEQQSRLERENAMTRDPISGTGFQEKETMQLWHCPNDYPFRSFLKAKSGKPEEQAKQPA
Sbjct:    1 MPVRTYNERTLGFPHDLAYQGYDLDNEEELQKLAKSMPFVDLDVAMHHRLITRDPICGIGNLPKEIDLLQGHCLRPRSRSNVTTPVRDPILLEGDFGGEYNCLYTTKDLKCKDRDDRNIITLEGDLGIELDPVRPHGGRPRSSIKVEAVRNPITGTGEFTKEWDPIWKYEGRQYFKRPEQIKRDPVTHSVPPENMGDFEPKFHLKHYNNQKSTDIISHDCAVQDLRDSDNFSNMRIRHHSQHDCRNPITHETKLGISNDKPWRAGTKHFPDRIKNDNPIAHHGFTDDIEERKEKEQQSRLERENAMTRDPISGTGFQEKETMQLWHCPNDYPFRSFLKAKSGKPEEQAKQPA 352
[Close]
BLAST of Sodium-dependent glucose transporter 1 isoform 2 vs. Planmine SMEST
Match: SMESG000029912.1 (SMESG000029912.1)

HSP 1 Score: 660.218 bits (1702), Expect = 0.000e+0
Identity = 315/316 (99.68%), Postives = 316/316 (100.00%), Query Frame = 1 
Query:  205 MPFVDLDVAMHHRLITRDPICGIGNLPKEIDLLQGHCLRPRSRSNVTTPVRDPILLEGNFGGEYNCLYTTKDLKCKDRDDRNIITLEGDLGIELDPVRPHGGRPRSSIKVEAVRNPITGTGEFTKEWDPIWKYEGRQYFKRPEQIKRDPVTHSVPPENMGDFEPKFHLKHYNNQKSTDIISHDCAVQDLRDSDNFSNMRIRHHSQHDCRNPITHETKLGISNDKPWRAGTKHFPDRIKNDNPIAHHGFTDDIEERKEKEQQSRLERENAMTRDPISGTGFQEKETMQLWHCPNDYPFRSFLKAKSGKPEEQAKQPA 1152
            MPFVDLDVAMHHRLITRDPICGIGNLPKEIDLLQGHCLRPRSRSNVTTPVRDPILLEG+FGGEYNCLYTTKDLKCKDRDDRNIITLEGDLGIELDPVRPHGGRPRSSIKVEAVRNPITGTGEFTKEWDPIWKYEGRQYFKRPEQIKRDPVTHSVPPENMGDFEPKFHLKHYNNQKSTDIISHDCAVQDLRDSDNFSNMRIRHHSQHDCRNPITHETKLGISNDKPWRAGTKHFPDRIKNDNPIAHHGFTDDIEERKEKEQQSRLERENAMTRDPISGTGFQEKETMQLWHCPNDYPFRSFLKAKSGKPEEQAKQPA
Sbjct:    1 MPFVDLDVAMHHRLITRDPICGIGNLPKEIDLLQGHCLRPRSRSNVTTPVRDPILLEGDFGGEYNCLYTTKDLKCKDRDDRNIITLEGDLGIELDPVRPHGGRPRSSIKVEAVRNPITGTGEFTKEWDPIWKYEGRQYFKRPEQIKRDPVTHSVPPENMGDFEPKFHLKHYNNQKSTDIISHDCAVQDLRDSDNFSNMRIRHHSQHDCRNPITHETKLGISNDKPWRAGTKHFPDRIKNDNPIAHHGFTDDIEERKEKEQQSRLERENAMTRDPISGTGFQEKETMQLWHCPNDYPFRSFLKAKSGKPEEQAKQPA 316
[Close]
BLAST of Sodium-dependent glucose transporter 1 isoform 2 vs. Planmine SMEST
Match: SMESG000029912.1 (SMESG000029912.1)

HSP 1 Score: 562.377 bits (1448), Expect = 0.000e+0
Identity = 271/278 (97.48%), Postives = 273/278 (98.20%), Query Frame = 1 
Query:  205 MPFVDLDVAMHHRLITRDPICGIGNLPKEIDLLQGHCLRPRSRSNVTTPVRDPILLEGNFGGEYNCLYTTKDLKCKDRDDRNIITLEGDLGIELDPVRPHGGRPRSSIKVEAVRNPITGTGEFTKEWDPIWKYEGRQYFKRPEQIKRDPVTHSVPPENMGDFEPKFHLKHYNNQKSTDIISHDCAVQDLRDSDNFSNMRIRHHSQHDCRNPITHETKLGISNDKPWRAGTKHFPDRIKNDNPIAHHGFTDDIEERKEKEQQSRLERENAMTRDPISGT 1038
            MPFVDLDVAMHHRLITRDPICGIGNLPKEIDLLQGHCLRPRSRSNVTTPVRDPILLEG+FGGEYNCLYTTKDLKCKDRDDRNIITLEGDLGIELDPVRPHGGRPRSSIKVEAVRNPITGTGEFTKEWDPIWKYEGRQYFKRPEQIKRDPVTHSVPPENMGDFEPKFHLKHYNNQKSTDIISHDCAVQDLRDSDNFSNMRIRHHSQHDCRNPITHETKLGISNDKPWRAGTKHFPDRIKNDNPIAHHGFTDDIEERKEKEQQSRLERENA T+ P   T
Sbjct:    1 MPFVDLDVAMHHRLITRDPICGIGNLPKEIDLLQGHCLRPRSRSNVTTPVRDPILLEGDFGGEYNCLYTTKDLKCKDRDDRNIITLEGDLGIELDPVRPHGGRPRSSIKVEAVRNPITGTGEFTKEWDPIWKYEGRQYFKRPEQIKRDPVTHSVPPENMGDFEPKFHLKHYNNQKSTDIISHDCAVQDLRDSDNFSNMRIRHHSQHDCRNPITHETKLGISNDKPWRAGTKHFPDRIKNDNPIAHHGFTDDIEERKEKEQQSRLERENA-TKQPAKST 277
The following BLAST results are available for this feature:
BLAST of Sodium-dependent glucose transporter 1 isoform 2 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Sodium-dependent glucose transporter 1 isoform 2 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Sodium-dependent glucose transporter 1 isoform 2 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Sodium-dependent glucose transporter 1 isoform 2 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Sodium-dependent glucose transporter 1 isoform 2 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Sodium-dependent glucose transporter 1 isoform 2 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Sodium-dependent glucose transporter 1 isoform 2 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Sodium-dependent glucose transporter 1 isoform 2 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A4S2LI932.941e-3642.62Uncharacterized protein OS=Opisthorchis felineus O... [more]
A0A4S2LPN73.588e-3642.62Uncharacterized protein OS=Opisthorchis felineus O... [more]
G4VH633.569e-3432.29Putative surface protein PspC OS=Schistosoma manso... [more]
A0A3Q0KG584.103e-3432.29Putative surface protein PspC OS=Schistosoma manso... [more]
A0A4E0RGR56.275e-3433.23Uncharacterized protein OS=Fasciola hepatica OX=61... [more]
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BLAST of Sodium-dependent glucose transporter 1 isoform 2 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Sodium-dependent glucose transporter 1 isoform 2 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Sodium-dependent glucose transporter 1 isoform 2 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Sodium-dependent glucose transporter 1 isoform 2 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Sodium-dependent glucose transporter 1 isoform 2 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Sodium-dependent glucose transporter 1 isoform 2 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000029912.10.000e+099.72SMESG000029912.1[more]
SMESG000029912.10.000e+099.68SMESG000029912.1[more]
SMESG000029912.10.000e+097.48SMESG000029912.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30006960 ID=SMED30006960|Name=Sodium-dependent glucose transporter 1 isoform 2|organism=Schmidtea mediterranea sexual|type=transcript|length=1499bp
TTTTTGAGGAAAATTTCCCACAAATATTGATTTCTTTATTATTTCTTTAT
TTCTTTATTTCTTTTGTAATTATTTATTTTTTCTACATCAAGCACAATGC
CTGTTAGAACTTACAATGAAAGAACTTTGGGATTTCCACATGATCTGGCG
TATCAAGGATACGATTTGGATAATGAAGAAGAACTACAAAAGCTGGCAAA
ATCCATGCCTTTTGTGGACTTGGATGTTGCAATGCATCACCGATTAATCA
CTCGGGATCCAATTTGTGGGATCGGAAATTTGCCTAAAGAAATTGACTTA
CTTCAAGGTCATTGTCTTCGACCAAGATCTAGATCCAACGTGACAACGCC
TGTTCGTGACCCAATTTTATTAGAAGGAAACTTCGGAGGAGAATATAATT
GCTTGTATACGACTAAAGACTTAAAATGCAAAGATAGAGATGATCGTAAC
ATTATTACTTTGGAAGGAGATTTAGGGATTGAATTAGATCCAGTTCGTCC
TCACGGAGGGAGACCACGAAGCTCAATAAAAGTTGAAGCTGTAAGGAATC
CAATTACCGGCACAGGAGAGTTCACTAAAGAATGGGACCCTATATGGAAA
TATGAAGGTCGCCAATATTTTAAAAGACCTGAACAAATTAAGCGAGATCC
AGTTACTCACAGTGTTCCACCTGAAAATATGGGAGACTTCGAACCAAAGT
TTCATTTAAAGCATTACAATAATCAAAAATCAACTGACATCATCAGCCAT
GATTGCGCCGTGCAGGATCTACGAGATAGCGACAATTTTTCAAACATGAG
GATCCGTCATCATTCTCAACATGACTGCAGGAATCCCATAACTCATGAAA
CCAAACTCGGAATTAGCAATGATAAACCATGGCGGGCTGGCACAAAACAT
TTTCCTGACCGAATAAAAAATGATAATCCAATAGCTCATCACGGATTTAC
TGATGATATTGAAGAAAGAAAGGAAAAAGAACAACAATCTCGTTTAGAAA
GAGAAAATGCAATGACAAGAGACCCAATATCAGGAACTGGCTTCCAGGAG
AAAGAAACAATGCAATTGTGGCATTGCCCAAATGACTATCCTTTTAGATC
GTTTTTGAAGGCAAAGTCTGGAAAACCCGAAGAACAAGCAAAACAACCAG
CGAAATCCACAAAACCAAAACCATCAGGAAAGAAATAAATACTTTGTTTG
AATGGTTTATATGTGAAATTGTTTTAATTACTATATAGATAGTTTTTTAT
TTTTTTTATCCGTACTAGAAATTGATAATTTAATCTTAAATTTTGAATAT
TTAAACAAATGAGTTTCAGTTTATGATTTACTCATTTAATAACATTTTGT
AAAAAGGCTTAAAATGTAATTTTTAGAGCTTAGGTTATTTTAAGCCTTTT
ACTCTTTTATTTTTAATTTCAAGAGTTTATCTTATCATTTTTTCTATGAG
GTGGTTATGTTTATTTTATTATAAAAATATATTTTTCACGATAAAAAAA
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protein sequence of SMED30006960-orf-1

>SMED30006960-orf-1 ID=SMED30006960-orf-1|Name=SMED30006960-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=364bp
MPVRTYNERTLGFPHDLAYQGYDLDNEEELQKLAKSMPFVDLDVAMHHRL
ITRDPICGIGNLPKEIDLLQGHCLRPRSRSNVTTPVRDPILLEGNFGGEY
NCLYTTKDLKCKDRDDRNIITLEGDLGIELDPVRPHGGRPRSSIKVEAVR
NPITGTGEFTKEWDPIWKYEGRQYFKRPEQIKRDPVTHSVPPENMGDFEP
KFHLKHYNNQKSTDIISHDCAVQDLRDSDNFSNMRIRHHSQHDCRNPITH
ETKLGISNDKPWRAGTKHFPDRIKNDNPIAHHGFTDDIEERKEKEQQSRL
ERENAMTRDPISGTGFQEKETMQLWHCPNDYPFRSFLKAKSGKPEEQAKQ
PAKSTKPKPSGKK*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: biological process
TermDefinition
GO:0008643carbohydrate transport
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000418head
PLANA:0000484secretory system
PLANA:0003117parapharyngeal cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 277..305
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 335..363