SMED30006931

Overview
NameSMED30006931
Smed IDSMED30006931
Length (bp)6981
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30006931 (SMED30006931) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30006931 (SMED30006931) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30006931 (SMED30006931) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30006931 (SMED30006931) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30006931

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 23

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30006931h1SMcG0003062 PL08005A2A05smed_ncbi_20240424PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
pharynxSMED30006931h1SMcG0003062 dd_Smed_v4_4660_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
protonephridiaSMED30006931h1SMcG0003062 dd_Smed_v4_4660_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30006931h1SMcG0003062 dd_Smed_v4_4660_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30006931h1SMcG0003062 dd_Smed_v4_4660_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30006931h1SMcG0003062 dd_Smed_v4_4660_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30006931h1SMcG0003062 dd_Smed_v4_4660_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30006931h1SMcG0003062 dd_Smed_v4_4660_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30006931h1SMcG0003062 dd_Smed_v4_4660_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
anterior sideSMED30006931h1SMcG0003062 dd_Smed_v4_4660_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30006931h1SMcG0003062 Contig4578newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30006931h1SMcG0003062 Contig4578uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30006931h1SMcG0003062 Contig37066uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30006931h1SMcG0003062 Contig37066newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30006931h1SMcG0003062 Contig48241uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30006931h1SMcG0003062 Contig48241newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30006931h1SMcG0003062 Contig15098uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30006931h1SMcG0003062 Contig15098newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30006931h1SMcG0008326 Contig4578newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30006931h1SMcG0008326 Contig4578uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
protonephridiaSMED30006931h1SMcG0003062 dd_Smed_v6_4660_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30006931h1SMcG0003062 dd_Smed_v4_4660_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Category 4 cellSMED30006931h1SMcG0003062 dd_Smed_v4_4660_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
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BLAST of SMED30006931 vs. Planmine SMEST
Match: SMESG000040565.1 (SMESG000040565.1)

HSP 1 Score: 3544.98 bits (9191), Expect = 0.000e+0
Identity = 2215/2240 (98.88%), Postives = 2227/2240 (99.42%), Query Frame = 1 
Query:   88 MSLEIKSFLEEKKSHVCSAQSDSVSSLQFDKKVKSRSYSSQFTLSDLILVGIDRREEMRPIEHSLTVEVDLCTGIISDIKSTIHSKYHTIIHLDEMAETNAWVRKLITYDVFVDKDVMHSIRDEAMEPNKLYLLKHKHKDQTTESMAGSYLENVEVPQSKKLRTTAAQFNPTENDNKFVDRFVHSSNNNKARNAFFKSTNVLRNELIIRTGNFIDRPNNNENENYSTSLSVDLTTHKIPQIVSIEDLTIYDDDDLXXXXXXXXXXXXXXVMEFNLVENERTNLEVDDIPFAEESEIIDNDTIDVKRNTLSKSLQYYLPVFDTSQDVKNTXXXXXXXXXXXCSRSAVTTDENESMDQTDRPTLLGELDYESLNADEFDESITENEKDSSVKEIENYSLSSERNSFIFDRSFDLDDIICQENLVIHINQDTDEECINLNEVPKFHQLESGSKIPISQFDIINVKRNVSLSPTFQHHNFHKNKSIDFPKDFIEQRKEHLEKSESPINEIYVFDENEIESKNDFYNYEKNLEDLASINEDAQTFTKTRSFSLKRKSENPQDFLINDDPSFQIYPTKDDKKPSNNIYSDRKEKFLNSDLNSSIQFFKHVSEDSKIPGDXXXXXXXXXXXXXXVKKDETSTNSSDDSMIIKDVSSDGAYEFRRRPQKMNCKIEEEDENIVTSADSNDDLSDITNLTEEIQMKEKXXXXXXXXXXXXXXXXXXXXXKILRELNKTPIDSTPGHXXXXXXXXXXXXXXXXNSTDEASSYSEGKLEHATLIRSENLVKSEEIENXXXXXXXXXXXXXXXXFPPQINAILRQGESIEDIAKFLIYPNKENKGLIRTSGFDSQLNVIYKDEDINTNLLQNNKINKRKFSTSSEDDTSLKVSFPQNKFIERTEKLTSEPILDKKSFPKHKSDDESSSETIXXXXXXXXXXQQELTKEFESQVEMPKKVFPPEKLSKQHSLPIMNTGEMXXXXXXXXXXXXXXXXXXXQKNMDKDEKKKRAKYIEREEKFSKNPLVKKQISLPTRKTKGXXXXXXXXXXXXXXXXXXDEINPSNLKGNERRENQLTIKSDKYHKKITVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIKVFQATSNEKVNLCSSQSLNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDESQHSYVNLTQSKFVDQEKIASSESIDKKIISLNIRKEMNXXXXXXXXXXXXXXXDEDPQELDERTRLNTAIEHKETYTNNNSNSSIAKKPSDKQNNLNGEXXXXXXXXXXTNKSYENTKISKESSPRQNKDDNIKPGVITDAIVLSQEEDNSYISDTNKSDESISITIKNDSIRQENKTPSNLSIDRREKFTKLNSTEITSGFKRSASVPDYLMDSNSFSGKSSTADIAHQNRESLARSLKIIPTDSINNLSSDRKTHSYELLSVQLRDNVITRFIESRRKYTDKLNYSDSNEHPQQNVEYDSKKPSPLSIDRREKFCTPEELDRITPCDNLRDEVENXXXXXXXXXXXXXXXXXXXXAQLPEKKIFSENINDEDKMNELYIDNAQVNQKDKCKNELVNKSKDSQNEXXXXXXXXXXXXXXXXXEENDIRNFTPTTNKNKQSYSIDRLEKFTHQNHLDNHKVNKSKRQEINNTSESSEYXXXXXXXXXXXXIDHDEKFNEIGNLKNQISRPKSKGAYLDNERXXXXXXXXXXXXXXXXXXXXXXXGETPYKNLEHREKFTXXXXXXXXITKKPLDIPMSLDNEMXXXXXXXXXXXXXXXXXXXXXXXXXXXHPIKSEEIERYEKDINQNAKRLKYEQSKEKSDSTDEDVSLSLTSLPKDNKEIESDHSSNRLNTKDIEIIVVDKVNHESKSNDADQSISISTTASVSKDQKINHRYEKNDKYVSRSCQTLPYNRXXXXXXXXXXXXLDKPFLHGSLPILTQHTSGSIGNIVERRYHEFTENWSRQSPIGSNNSKENMQPKVVDDEHISSVKNTDLFTKKKFTEPLTTRPRPVPSYLSPVNAFPYVPTDPEFSSADSLVNDYSSDYNVNEIIPKYKSLPDFVKSLSTTSLPKQPLXXXXXXXXXXXXXXXPFQPINLDYGAVENKNIPRNRFKKKTSLTSVTTDSSYLENPILKDKETFNNYASSDSLGSLTSQNFGTTHPKARIQNNTISLDNVXXXXXXXXXXXQIEYQTPPSRTMPYLPKVNSLINNKNKNSGLPVANGKQEHIKKSNSLPQKRIPXXXXXXXXXXXXXXXXXAEIHHL 6807
            MSLEIKSFLEEKKSHVCSAQSDSVSSLQFDKKVKSRSYSSQFTLSDLILVGIDRREEMRPIEHSLTVEVDLCTGIISDIKSTIHSKYHTIIHLDEMAETNAWVRKLITYDVFVDKDVMHSIRDEAMEPNKLYLLKHKHKDQTTESMAGSYLENVE+PQSKKLRTTAAQFNPTENDNKFVDRFVHS NNNKARNAFFKSTNVLRNELIIRTGNFIDRPNNNENENYSTSLSVDLTTHKIPQIVSIEDLTIYDDDDLETPKPTENPKTEEPVMEFNLVENERTNLEVDDIPFAEESEIIDNDTIDVKRNTLSKSLQYYLPVFDTSQDVKNTDENEDSESNSNCSRSAVTTDENESMDQTDRPTLL E+DYESLNADEFDESITENEKDSSVKEIENYSLSSERNSFIFDRSFDLDDIICQENLVIHINQDTDEECINLNEVPKFHQLESGSKIPISQFDIINVKRNVSLSPTFQHHNFHKNKSIDFPKDFIEQRKEHLEKSESPINEIYVFDENEIESKNDFYNYEKNLEDLASINEDAQTFTKTRSFSLKRKSENPQDFLINDDPSFQIYPTKDDKKPSNNIYSDRKEKFLNSDLNSSIQFFKHVSEDSKI GDTRSSTPSSENETESVKKDETSTNSSDDSMIIKDVSSDGAYEFRRRPQKMNCKIEEEDENIVTSADSN+DLSDITNLTEEIQMKEKDYSSSEDLSVYSSSSTVTGSEKILRELNKTPIDSTPGHFERFLKEREERILKERNSTDEASSYSEGKLEHATLIRSENLVKSEEIENTNDSS+TEDTSSSSSDFPPQINAILRQGESIEDIAKFLIYPNKENKGLIRTSGFDSQLNVIYKDEDINTNLLQNNKINKRKFSTSSEDDTSLKVSFPQNKFIERTEKLTSEPI DKKSFPKHKSDDESSSETINSNSDLNSDSQQELTKEFESQVEMPKKVFPPEKLSKQHSLPIMNTGEMSSSTDSES NSISTSTDEIQKNMDKDEKKKRAKYIE+EEKFSKNPLVKKQISLPTRKTKGSSSASESASSSMSISTSEDEINPSNLKGNERRENQLTIKSDKYHKKITVSKKILSNLSKSSESSQSFSSSEDEPPPPKEIKVFQATSNEKVNLCSSQSLNT SPILKSKKISSS+SSSSTSERSRSVSISQDESQHSYVNLTQSKFVDQEKIASSESIDKKIISLNIRKEMNSSYTESSSESVSTSSDEDPQELDERTRLNTAIEHKETYTNNNSNSSIAKKPSDKQNNLNGESDS YSESSSTNKSYENTKISKESSPRQNKDDNIKPGVIT+AIVLSQEEDNSYISDTNKSDESISITIKNDSIRQENKTPSNLSIDRREKFTKLNSTEITSGFKRSASVPDYL+DSNSFSGKSSTADIAHQNRESLARSLKIIPTDSINNLSSDRKTHSYELLSVQLRDNVITRFIESRRKYTDKLNYSDSNEHPQQNVEYDSKKPSPLSIDRREKFCTPEE DRITPCDNLRDEVENSDLENSMTSLSSSSESLSSSAQLPEKKIFSENI DEDKMNELYIDNAQVNQKDKCKNELVNKSKDSQNEDDSYSISTSDSSTGLSDEENDIRNFTPTTNKNKQSYSIDRLEKFTHQNHL+NHKVNKSK QEINNTSESSEYDNLLDKNKNTKNIDHDEKFNEIGNLKNQISRPKSKGAYLDNERS+LSSDFSNSSNSENESASDDDDGETPYKNLEHREKFTNNNNSNSNITKKPLDIPMSLDNEMDSSYSKSSSTNNSKSSTKSGKISTDKGHPIKSEEIERYEKDINQNAKRLKYEQSKEKSDSTDEDVSLSLTSLPKDNKEIESDHSS+RLNTKDIEIIVVDKVNHESKSNDADQSISISTTASVSKDQKINHRYEKNDKYVSRSCQTLPYNRIQIIPIKQKSKSLDKPFLHGSLPILTQHTSGSIGNIVERRYHEFTENWSRQSPIGSNNSKENMQPKVVDDEHISSVKNTDLFTKKKFTEPLTTRPRPVPSYLSPVNAFPYVPTDPEFSSADSLVNDYSSDYNVNEIIPKYKSLPDFVKSLSTTSLPKQPLKSKTEIKK IVKKKSPFQPINLDYGAVENKNIPRNRFKKKTSLTSVTTDSSYLE PILKDKETFNNYASSDSLGSLTSQN GTTHPKARIQNNTI+LDNVSSTDSSSDSDTQIEYQTPPSRTMPYLPKVNSLINNKNKNSGLPVANGKQEHIKKSNSLPQKRIPSSSESSEYSSTSDDDDSAEIHHL
Sbjct:    1 MSLEIKSFLEEKKSHVCSAQSDSVSSLQFDKKVKSRSYSSQFTLSDLILVGIDRREEMRPIEHSLTVEVDLCTGIISDIKSTIHSKYHTIIHLDEMAETNAWVRKLITYDVFVDKDVMHSIRDEAMEPNKLYLLKHKHKDQTTESMAGSYLENVEIPQSKKLRTTAAQFNPTENDNKFVDRFVHSYNNNKARNAFFKSTNVLRNELIIRTGNFIDRPNNNENENYSTSLSVDLTTHKIPQIVSIEDLTIYDDDDLETPKPTENPKTEEPVMEFNLVENERTNLEVDDIPFAEESEIIDNDTIDVKRNTLSKSLQYYLPVFDTSQDVKNTDENEDSESNSNCSRSAVTTDENESMDQTDRPTLLDEIDYESLNADEFDESITENEKDSSVKEIENYSLSSERNSFIFDRSFDLDDIICQENLVIHINQDTDEECINLNEVPKFHQLESGSKIPISQFDIINVKRNVSLSPTFQHHNFHKNKSIDFPKDFIEQRKEHLEKSESPINEIYVFDENEIESKNDFYNYEKNLEDLASINEDAQTFTKTRSFSLKRKSENPQDFLINDDPSFQIYPTKDDKKPSNNIYSDRKEKFLNSDLNSSIQFFKHVSEDSKILGDTRSSTPSSENETESVKKDETSTNSSDDSMIIKDVSSDGAYEFRRRPQKMNCKIEEEDENIVTSADSNEDLSDITNLTEEIQMKEKDYSSSEDLSVYSSSSTVTGSEKILRELNKTPIDSTPGHFERFLKEREERILKERNSTDEASSYSEGKLEHATLIRSENLVKSEEIENTNDSSHTEDTSSSSSDFPPQINAILRQGESIEDIAKFLIYPNKENKGLIRTSGFDSQLNVIYKDEDINTNLLQNNKINKRKFSTSSEDDTSLKVSFPQNKFIERTEKLTSEPISDKKSFPKHKSDDESSSETINSNSDLNSDSQQELTKEFESQVEMPKKVFPPEKLSKQHSLPIMNTGEMSSSTDSESKNSISTSTDEIQKNMDKDEKKKRAKYIEKEEKFSKNPLVKKQISLPTRKTKGSSSASESASSSMSISTSEDEINPSNLKGNERRENQLTIKSDKYHKKITVSKKILSNLSKSSESSQSFSSSEDEPPPPKEIKVFQATSNEKVNLCSSQSLNTKSPILKSKKISSSTSSSSTSERSRSVSISQDESQHSYVNLTQSKFVDQEKIASSESIDKKIISLNIRKEMNSSYTESSSESVSTSSDEDPQELDERTRLNTAIEHKETYTNNNSNSSIAKKPSDKQNNLNGESDSSYSESSSTNKSYENTKISKESSPRQNKDDNIKPGVITNAIVLSQEEDNSYISDTNKSDESISITIKNDSIRQENKTPSNLSIDRREKFTKLNSTEITSGFKRSASVPDYLVDSNSFSGKSSTADIAHQNRESLARSLKIIPTDSINNLSSDRKTHSYELLSVQLRDNVITRFIESRRKYTDKLNYSDSNEHPQQNVEYDSKKPSPLSIDRREKFCTPEEFDRITPCDNLRDEVENSDLENSMTSLSSSSESLSSSAQLPEKKIFSENIYDEDKMNELYIDNAQVNQKDKCKNELVNKSKDSQNEDDSYSISTSDSSTGLSDEENDIRNFTPTTNKNKQSYSIDRLEKFTHQNHLENHKVNKSKPQEINNTSESSEYDNLLDKNKNTKNIDHDEKFNEIGNLKNQISRPKSKGAYLDNERSKLSSDFSNSSNSENESASDDDDGETPYKNLEHREKFTNNNNSNSNITKKPLDIPMSLDNEMDSSYSKSSSTNNSKSSTKSGKISTDKGHPIKSEEIERYEKDINQNAKRLKYEQSKEKSDSTDEDVSLSLTSLPKDNKEIESDHSSHRLNTKDIEIIVVDKVNHESKSNDADQSISISTTASVSKDQKINHRYEKNDKYVSRSCQTLPYNRIQIIPIKQKSKSLDKPFLHGSLPILTQHTSGSIGNIVERRYHEFTENWSRQSPIGSNNSKENMQPKVVDDEHISSVKNTDLFTKKKFTEPLTTRPRPVPSYLSPVNAFPYVPTDPEFSSADSLVNDYSSDYNVNEIIPKYKSLPDFVKSLSTTSLPKQPLKSKTEIKKPIVKKKSPFQPINLDYGAVENKNIPRNRFKKKTSLTSVTTDSSYLEKPILKDKETFNNYASSDSLGSLTSQNIGTTHPKARIQNNTINLDNVSSTDSSSDSDTQIEYQTPPSRTMPYLPKVNSLINNKNKNSGLPVANGKQEHIKKSNSLPQKRIPSSSESSEYSSTSDDDDSAEIHHL 2240
[Close]
BLAST of SMED30006931 vs. Planmine SMEST
Match: SMESG000040565.1 (SMESG000040565.1)

HSP 1 Score: 3540.36 bits (9179), Expect = 0.000e+0
Identity = 2215/2241 (98.84%), Postives = 2227/2241 (99.38%), Query Frame = 1 
Query:   88 MSLEIKSFLEEKKSHVCSAQSDSVSSLQFDKKVKSRSYSSQFTLSDLILVGIDRREEMRPIEHSLTVEVDLCTGIISDIKSTIHSKYHTIIHLDEMAETNAWVRKLITYDVFVDKDVMHSIRDEAMEPNKLYLLKHKHKDQTTESMAGSYLENVEVPQSKKLRTTAAQFNPTENDNKFVDRFVHSSNNNKARNAFFKSTNVLRNELIIRTGNFIDRPNNNENENYSTSLSVDLTTHKIPQIVSIEDLTIYDDDDLXXXXXXXXXXXXXXVMEFNLVENERTNLEVDDIPFAEESEIIDNDTIDVKRNTLSKSLQYYLPVFDTSQDVKNTXXXXXXXXXXXCSRSAVTTDENESMDQTDRPTLLGELDYESLNADEFDESITENEKDSSVKEIENYSLSSERNSFIFDRSFDLDDIICQENLVIHINQDTDEECINLNEVPKFHQLESGSKIPISQFDIINVKRNVSLSPTFQHHNFHKNKSIDFPKDFIEQRKEHLEKSESPINEIYVFDENEIESKNDFYNYEKNLEDLASINEDAQTFTKTRSFSLKRKSENPQDFLINDDPSFQIYPTKDDKKPSNNIYSDRKEKFLNSDLNSSIQFFKHVSEDSKIPGDXXXXXXXXXXXXXXVKKDETSTNSSDDSMIIKDVSSDGAYEFRRRPQKMNCKIEEEDENIVTSADSNDDLSDITNLTEEIQMKEKXXXXXXXXXXXXXXXXXXXXXKILRELNKTPIDSTPGHXXXXXXXXXXXXXXXXNSTDEASSYSEGKLEHATLIRSENLVKSEEIENXXXXXXXXXXXXXXXXFPPQINAILRQGESIEDIAKFLIYPNKENKGLIRTSGFDSQLNVIYKDEDINTNLLQNNKINKRKFSTSSEDDTSLKVSFPQNKFIERTEKLTSEPILDKKSFPKHKSDDESSSETIXXXXXXXXXXQQELTKEFESQVEMPKKVFPPEKLSKQHSLPIMNTGEMXXXXXXXXXXXXXXXXXXXQKNMDKDEKKKRAKYIEREEKFSKNPLVKKQISLPTRKTKGXXXXXXXXXXXXXXXXXXDEINPSNL-KGNERRENQLTIKSDKYHKKITVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIKVFQATSNEKVNLCSSQSLNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDESQHSYVNLTQSKFVDQEKIASSESIDKKIISLNIRKEMNXXXXXXXXXXXXXXXDEDPQELDERTRLNTAIEHKETYTNNNSNSSIAKKPSDKQNNLNGEXXXXXXXXXXTNKSYENTKISKESSPRQNKDDNIKPGVITDAIVLSQEEDNSYISDTNKSDESISITIKNDSIRQENKTPSNLSIDRREKFTKLNSTEITSGFKRSASVPDYLMDSNSFSGKSSTADIAHQNRESLARSLKIIPTDSINNLSSDRKTHSYELLSVQLRDNVITRFIESRRKYTDKLNYSDSNEHPQQNVEYDSKKPSPLSIDRREKFCTPEELDRITPCDNLRDEVENXXXXXXXXXXXXXXXXXXXXAQLPEKKIFSENINDEDKMNELYIDNAQVNQKDKCKNELVNKSKDSQNEXXXXXXXXXXXXXXXXXEENDIRNFTPTTNKNKQSYSIDRLEKFTHQNHLDNHKVNKSKRQEINNTSESSEYXXXXXXXXXXXXIDHDEKFNEIGNLKNQISRPKSKGAYLDNERXXXXXXXXXXXXXXXXXXXXXXXGETPYKNLEHREKFTXXXXXXXXITKKPLDIPMSLDNEMXXXXXXXXXXXXXXXXXXXXXXXXXXXHPIKSEEIERYEKDINQNAKRLKYEQSKEKSDSTDEDVSLSLTSLPKDNKEIESDHSSNRLNTKDIEIIVVDKVNHESKSNDADQSISISTTASVSKDQKINHRYEKNDKYVSRSCQTLPYNRXXXXXXXXXXXXLDKPFLHGSLPILTQHTSGSIGNIVERRYHEFTENWSRQSPIGSNNSKENMQPKVVDDEHISSVKNTDLFTKKKFTEPLTTRPRPVPSYLSPVNAFPYVPTDPEFSSADSLVNDYSSDYNVNEIIPKYKSLPDFVKSLSTTSLPKQPLXXXXXXXXXXXXXXXPFQPINLDYGAVENKNIPRNRFKKKTSLTSVTTDSSYLENPILKDKETFNNYASSDSLGSLTSQNFGTTHPKARIQNNTISLDNVXXXXXXXXXXXQIEYQTPPSRTMPYLPKVNSLINNKNKNSGLPVANGKQEHIKKSNSLPQKRIPXXXXXXXXXXXXXXXXXAEIHHL 6807
            MSLEIKSFLEEKKSHVCSAQSDSVSSLQFDKKVKSRSYSSQFTLSDLILVGIDRREEMRPIEHSLTVEVDLCTGIISDIKSTIHSKYHTIIHLDEMAETNAWVRKLITYDVFVDKDVMHSIRDEAMEPNKLYLLKHKHKDQTTESMAGSYLENVE+PQSKKLRTTAAQFNPTENDNKFVDRFVHS NNNKARNAFFKSTNVLRNELIIRTGNFIDRPNNNENENYSTSLSVDLTTHKIPQIVSIEDLTIYDDDDLETPKPTENPKTEEPVMEFNLVENERTNLEVDDIPFAEESEIIDNDTIDVKRNTLSKSLQYYLPVFDTSQDVKNTDENEDSESNSNCSRSAVTTDENESMDQTDRPTLL E+DYESLNADEFDESITENEKDSSVKEIENYSLSSERNSFIFDRSFDLDDIICQENLVIHINQDTDEECINLNEVPKFHQLESGSKIPISQFDIINVKRNVSLSPTFQHHNFHKNKSIDFPKDFIEQRKEHLEKSESPINEIYVFDENEIESKNDFYNYEKNLEDLASINEDAQTFTKTRSFSLKRKSENPQDFLINDDPSFQIYPTKDDKKPSNNIYSDRKEKFLNSDLNSSIQFFKHVSEDSKI GDTRSSTPSSENETESVKKDETSTNSSDDSMIIKDVSSDGAYEFRRRPQKMNCKIEEEDENIVTSADSN+DLSDITNLTEEIQMKEKDYSSSEDLSVYSSSSTVTGSEKILRELNKTPIDSTPGHFERFLKEREERILKERNSTDEASSYSEGKLEHATLIRSENLVKSEEIENTNDSS+TEDTSSSSSDFPPQINAILRQGESIEDIAKFLIYPNKENKGLIRTSGFDSQLNVIYKDEDINTNLLQNNKINKRKFSTSSEDDTSLKVSFPQNKFIERTEKLTSEPI DKKSFPKHKSDDESSSETINSNSDLNSDSQQELTKEFESQVEMPKKVFPPEKLSKQHSLPIMNTGEMSSSTDSES NSISTSTDEIQKNMDKDEKKKRAKYIE+EEKFSKNPLVKKQISLPTRKTKGSSSASESASSSMSISTSEDEINPSNL KGNERRENQLTIKSDKYHKKITVSKKILSNLSKSSESSQSFSSSEDEPPPPKEIKVFQATSNEKVNLCSSQSLNT SPILKSKKISSS+SSSSTSERSRSVSISQDESQHSYVNLTQSKFVDQEKIASSESIDKKIISLNIRKEMNSSYTESSSESVSTSSDEDPQELDERTRLNTAIEHKETYTNNNSNSSIAKKPSDKQNNLNGESDS YSESSSTNKSYENTKISKESSPRQNKDDNIKPGVIT+AIVLSQEEDNSYISDTNKSDESISITIKNDSIRQENKTPSNLSIDRREKFTKLNSTEITSGFKRSASVPDYL+DSNSFSGKSSTADIAHQNRESLARSLKIIPTDSINNLSSDRKTHSYELLSVQLRDNVITRFIESRRKYTDKLNYSDSNEHPQQNVEYDSKKPSPLSIDRREKFCTPEE DRITPCDNLRDEVENSDLENSMTSLSSSSESLSSSAQLPEKKIFSENI DEDKMNELYIDNAQVNQKDKCKNELVNKSKDSQNEDDSYSISTSDSSTGLSDEENDIRNFTPTTNKNKQSYSIDRLEKFTHQNHL+NHKVNKSK QEINNTSESSEYDNLLDKNKNTKNIDHDEKFNEIGNLKNQISRPKSKGAYLDNERS+LSSDFSNSSNSENESASDDDDGETPYKNLEHREKFTNNNNSNSNITKKPLDIPMSLDNEMDSSYSKSSSTNNSKSSTKSGKISTDKGHPIKSEEIERYEKDINQNAKRLKYEQSKEKSDSTDEDVSLSLTSLPKDNKEIESDHSS+RLNTKDIEIIVVDKVNHESKSNDADQSISISTTASVSKDQKINHRYEKNDKYVSRSCQTLPYNRIQIIPIKQKSKSLDKPFLHGSLPILTQHTSGSIGNIVERRYHEFTENWSRQSPIGSNNSKENMQPKVVDDEHISSVKNTDLFTKKKFTEPLTTRPRPVPSYLSPVNAFPYVPTDPEFSSADSLVNDYSSDYNVNEIIPKYKSLPDFVKSLSTTSLPKQPLKSKTEIKK IVKKKSPFQPINLDYGAVENKNIPRNRFKKKTSLTSVTTDSSYLE PILKDKETFNNYASSDSLGSLTSQN GTTHPKARIQNNTI+LDNVSSTDSSSDSDTQIEYQTPPSRTMPYLPKVNSLINNKNKNSGLPVANGKQEHIKKSNSLPQKRIPSSSESSEYSSTSDDDDSAEIHHL
Sbjct:    1 MSLEIKSFLEEKKSHVCSAQSDSVSSLQFDKKVKSRSYSSQFTLSDLILVGIDRREEMRPIEHSLTVEVDLCTGIISDIKSTIHSKYHTIIHLDEMAETNAWVRKLITYDVFVDKDVMHSIRDEAMEPNKLYLLKHKHKDQTTESMAGSYLENVEIPQSKKLRTTAAQFNPTENDNKFVDRFVHSYNNNKARNAFFKSTNVLRNELIIRTGNFIDRPNNNENENYSTSLSVDLTTHKIPQIVSIEDLTIYDDDDLETPKPTENPKTEEPVMEFNLVENERTNLEVDDIPFAEESEIIDNDTIDVKRNTLSKSLQYYLPVFDTSQDVKNTDENEDSESNSNCSRSAVTTDENESMDQTDRPTLLDEIDYESLNADEFDESITENEKDSSVKEIENYSLSSERNSFIFDRSFDLDDIICQENLVIHINQDTDEECINLNEVPKFHQLESGSKIPISQFDIINVKRNVSLSPTFQHHNFHKNKSIDFPKDFIEQRKEHLEKSESPINEIYVFDENEIESKNDFYNYEKNLEDLASINEDAQTFTKTRSFSLKRKSENPQDFLINDDPSFQIYPTKDDKKPSNNIYSDRKEKFLNSDLNSSIQFFKHVSEDSKILGDTRSSTPSSENETESVKKDETSTNSSDDSMIIKDVSSDGAYEFRRRPQKMNCKIEEEDENIVTSADSNEDLSDITNLTEEIQMKEKDYSSSEDLSVYSSSSTVTGSEKILRELNKTPIDSTPGHFERFLKEREERILKERNSTDEASSYSEGKLEHATLIRSENLVKSEEIENTNDSSHTEDTSSSSSDFPPQINAILRQGESIEDIAKFLIYPNKENKGLIRTSGFDSQLNVIYKDEDINTNLLQNNKINKRKFSTSSEDDTSLKVSFPQNKFIERTEKLTSEPISDKKSFPKHKSDDESSSETINSNSDLNSDSQQELTKEFESQVEMPKKVFPPEKLSKQHSLPIMNTGEMSSSTDSESKNSISTSTDEIQKNMDKDEKKKRAKYIEKEEKFSKNPLVKKQISLPTRKTKGSSSASESASSSMSISTSEDEINPSNLVKGNERRENQLTIKSDKYHKKITVSKKILSNLSKSSESSQSFSSSEDEPPPPKEIKVFQATSNEKVNLCSSQSLNTKSPILKSKKISSSTSSSSTSERSRSVSISQDESQHSYVNLTQSKFVDQEKIASSESIDKKIISLNIRKEMNSSYTESSSESVSTSSDEDPQELDERTRLNTAIEHKETYTNNNSNSSIAKKPSDKQNNLNGESDSSYSESSSTNKSYENTKISKESSPRQNKDDNIKPGVITNAIVLSQEEDNSYISDTNKSDESISITIKNDSIRQENKTPSNLSIDRREKFTKLNSTEITSGFKRSASVPDYLVDSNSFSGKSSTADIAHQNRESLARSLKIIPTDSINNLSSDRKTHSYELLSVQLRDNVITRFIESRRKYTDKLNYSDSNEHPQQNVEYDSKKPSPLSIDRREKFCTPEEFDRITPCDNLRDEVENSDLENSMTSLSSSSESLSSSAQLPEKKIFSENIYDEDKMNELYIDNAQVNQKDKCKNELVNKSKDSQNEDDSYSISTSDSSTGLSDEENDIRNFTPTTNKNKQSYSIDRLEKFTHQNHLENHKVNKSKPQEINNTSESSEYDNLLDKNKNTKNIDHDEKFNEIGNLKNQISRPKSKGAYLDNERSKLSSDFSNSSNSENESASDDDDGETPYKNLEHREKFTNNNNSNSNITKKPLDIPMSLDNEMDSSYSKSSSTNNSKSSTKSGKISTDKGHPIKSEEIERYEKDINQNAKRLKYEQSKEKSDSTDEDVSLSLTSLPKDNKEIESDHSSHRLNTKDIEIIVVDKVNHESKSNDADQSISISTTASVSKDQKINHRYEKNDKYVSRSCQTLPYNRIQIIPIKQKSKSLDKPFLHGSLPILTQHTSGSIGNIVERRYHEFTENWSRQSPIGSNNSKENMQPKVVDDEHISSVKNTDLFTKKKFTEPLTTRPRPVPSYLSPVNAFPYVPTDPEFSSADSLVNDYSSDYNVNEIIPKYKSLPDFVKSLSTTSLPKQPLKSKTEIKKPIVKKKSPFQPINLDYGAVENKNIPRNRFKKKTSLTSVTTDSSYLEKPILKDKETFNNYASSDSLGSLTSQNIGTTHPKARIQNNTINLDNVSSTDSSSDSDTQIEYQTPPSRTMPYLPKVNSLINNKNKNSGLPVANGKQEHIKKSNSLPQKRIPSSSESSEYSSTSDDDDSAEIHHL 2241
The following BLAST results are available for this feature:
BLAST of SMED30006931 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006931 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006931 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006931 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006931 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006931 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006931 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006931 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006931 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006931 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006931 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006931 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006931 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006931 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000040565.10.000e+098.88SMESG000040565.1[more]
SMESG000040565.10.000e+098.84SMESG000040565.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30006931 ID=SMED30006931|Name=SMED30006931|organism=Schmidtea mediterranea sexual|type=transcript|length=6981bp
CTTACAATTGTATTTGACCTTCGATTGTATTAGTCTATTGTAGAAGTCTA
TTGATCCATTTTTTGATTACAACAGATCGAGAAAAACATGAGCTTGGAAA
TTAAAAGCTTTTTAGAGGAAAAGAAATCCCATGTCTGTTCAGCTCAGAGT
GATTCTGTCAGTTCATTGCAATTCGATAAAAAAGTTAAATCTCGTAGCTA
TAGTTCACAATTTACCCTCAGTGATCTGATTTTGGTTGGCATTGATAGGC
GAGAAGAAATGCGACCTATTGAACACAGTTTAACTGTAGAAGTGGACCTA
TGTACTGGAATTATTAGCGACATTAAATCTACAATTCATTCGAAATATCA
TACAATTATTCATTTGGATGAAATGGCCGAGACGAATGCATGGGTTAGAA
AACTGATTACCTACGACGTATTTGTGGATAAAGATGTTATGCATTCTATC
AGAGATGAAGCAATGGAACCTAATAAACTTTATTTACTTAAACACAAACA
CAAAGATCAGACTACAGAAAGCATGGCTGGAAGCTATTTAGAAAATGTTG
AGGTTCCGCAATCTAAAAAATTACGAACAACCGCAGCTCAATTTAATCCT
ACTGAAAACGATAATAAATTTGTTGACAGATTTGTTCATTCATCTAACAA
CAATAAAGCTCGAAATGCGTTCTTTAAATCTACAAACGTTTTAAGAAACG
AATTAATTATTCGTACGGGAAACTTCATTGACAGACCAAATAATAATGAG
AACGAAAACTATTCTACTTCCTTATCAGTAGATCTTACTACTCACAAAAT
ACCACAAATTGTCAGCATTGAGGATCTAACAATTTACGACGATGATGATT
TAGAAACACCAAAACCAACTGAAAATCCAAAAACCGAGGAACCGGTTATG
GAGTTTAATTTAGTCGAAAATGAGAGAACAAATCTCGAAGTTGATGATAT
ACCTTTTGCAGAGGAATCTGAAATTATTGATAATGATACGATAGATGTTA
AAAGAAATACTCTATCCAAATCGTTGCAGTATTATTTGCCAGTATTTGAT
ACTAGTCAAGATGTAAAAAATACTGATGAAAACGAAGATTCGGAAAGCAA
TAGTAACTGCTCTCGAAGTGCTGTTACTACTGATGAAAATGAGTCGATGG
ATCAAACAGATAGACCTACATTATTAGGTGAACTTGATTATGAATCTCTG
AATGCTGACGAATTCGACGAATCTATAACCGAAAACGAAAAGGATTCAAG
TGTAAAAGAAATTGAGAACTATTCACTTAGTTCCGAAAGAAATTCCTTTA
TTTTTGATAGATCATTCGACCTTGATGACATAATATGCCAAGAAAATCTA
GTAATTCATATCAATCAAGACACAGATGAAGAATGCATTAATCTCAATGA
AGTTCCTAAATTCCACCAATTAGAATCAGGATCAAAGATTCCAATTTCTC
AATTCGACATCATAAATGTCAAAAGAAACGTTTCACTCTCTCCAACATTT
CAACACCACAATTTCCATAAAAATAAAAGCATAGATTTTCCAAAAGATTT
TATTGAGCAAAGAAAAGAACATTTAGAAAAATCAGAGAGTCCAATAAACG
AAATTTATGTTTTCGATGAAAACGAAATCGAATCAAAAAATGATTTTTAC
AATTACGAAAAAAATTTAGAAGATTTAGCTTCCATTAATGAAGATGCACA
AACTTTTACTAAAACCAGATCCTTTAGCCTCAAAAGAAAGAGTGAAAATC
CGCAAGATTTTTTAATTAATGATGATCCCAGTTTCCAAATTTATCCGACA
AAAGATGATAAAAAACCTTCAAACAATATTTACAGTGATAGGAAAGAAAA
ATTTCTGAATTCTGATTTGAATTCATCAATTCAATTTTTCAAACATGTTT
CAGAAGACAGTAAAATTCCCGGAGATACAAGAAGTTCAACGCCATCATCT
GAAAATGAAACTGAATCTGTAAAAAAAGATGAAACATCGACAAATTCATC
AGATGATTCCATGATAATTAAAGACGTTTCCAGTGATGGGGCTTATGAAT
TTCGCAGACGTCCTCAAAAGATGAATTGTAAAATTGAAGAAGAAGATGAA
AATATCGTAACAAGTGCTGATTCTAATGACGATTTGTCAGATATAACAAA
TTTGACTGAAGAAATACAAATGAAAGAAAAAGATTACTCAAGCAGTGAAG
ATCTTTCTGTTTATTCTTCTTCATCTACTGTCACTGGCAGTGAAAAAATT
TTACGAGAATTAAATAAAACACCGATTGATTCAACACCAGGTCATTTCGA
AAGATTTTTGAAAGAAAGAGAAGAAAGAATTTTGAAAGAAAGAAATTCAA
CGGATGAAGCCTCATCATATTCTGAAGGGAAATTAGAACATGCAACATTA
ATTAGAAGTGAAAATTTGGTAAAATCTGAAGAAATTGAAAATACAAATGA
TTCCAGTTATACTGAAGACACATCTTCTTCATCTTCAGATTTTCCTCCAC
AAATTAATGCTATTTTGCGGCAAGGCGAATCTATTGAGGATATCGCAAAA
TTTTTGATATACCCCAACAAAGAAAATAAAGGTTTAATAAGAACCTCAGG
ATTTGACAGTCAATTAAACGTTATTTATAAAGATGAGGACATTAACACTA
ATCTTCTCCAAAATAATAAAATCAATAAAAGAAAATTCTCAACATCTTCG
GAAGATGATACGTCATTAAAAGTGTCCTTTCCACAAAACAAATTCATTGA
AAGAACCGAAAAACTCACATCAGAACCAATATTAGATAAGAAATCTTTTC
CGAAACATAAATCGGATGACGAAAGCAGCAGTGAAACTATAAATTCAAAT
TCAGATTTAAATTCAGATTCGCAGCAAGAGTTAACAAAAGAATTTGAATC
ACAAGTTGAAATGCCAAAAAAAGTATTTCCACCAGAAAAGCTCAGCAAGC
AACATTCATTACCAATTATGAATACTGGTGAAATGTCTTCATCAACCGAC
AGTGAGAGTACAAATTCAATCTCTACTTCAACCGATGAAATTCAGAAAAA
TATGGATAAAGACGAGAAAAAGAAACGAGCTAAATACATTGAAAGAGAAG
AAAAGTTTTCCAAAAATCCATTGGTTAAAAAGCAAATATCACTTCCTACT
CGAAAAACTAAAGGATCTTCATCGGCTAGTGAGAGTGCAAGTAGTAGCAT
GTCAATTTCTACTTCTGAAGATGAAATAAATCCGTCTAATTTGAAAGGTA
ATGAAAGAAGAGAAAATCAGTTGACTATAAAATCAGATAAATATCATAAA
AAAATTACCGTTTCTAAAAAAATTTTATCAAACTTGTCTAAAAGCAGTGA
AAGCTCTCAGTCGTTTTCATCATCAGAAGATGAACCTCCTCCTCCGAAAG
AAATTAAAGTTTTTCAAGCAACATCAAATGAAAAGGTGAATTTGTGCAGC
TCTCAATCTCTCAATACGATATCACCTATTTTAAAATCTAAAAAAATAAG
TTCATCGTCTTCATCAAGCAGTACGAGTGAAAGAAGTAGATCGGTCTCAA
TTTCACAGGATGAAAGTCAACATTCCTATGTTAATTTAACTCAATCTAAA
TTTGTCGATCAAGAAAAAATTGCTAGTTCAGAATCCATTGACAAAAAAAT
TATTTCTCTAAATATAAGAAAAGAAATGAATTCATCATACACTGAATCTA
GCTCGGAATCTGTTTCTACTTCTTCCGACGAAGATCCACAGGAATTAGAT
GAACGAACAAGGTTAAATACAGCAATAGAACACAAGGAAACGTATACCAA
TAATAACTCAAATTCAAGTATAGCCAAGAAACCCTCAGATAAACAAAATA
ATCTGAATGGGGAAAGTGATTCAAGATATAGTGAATCTTCATCAACTAAT
AAATCATACGAAAATACCAAAATTTCAAAGGAGTCATCGCCTAGACAGAA
TAAAGATGATAACATAAAGCCTGGAGTAATTACAGATGCAATTGTTTTGT
CTCAAGAGGAGGATAATTCTTACATATCTGATACTAATAAAAGCGATGAA
TCCATCTCAATAACCATTAAAAATGATTCAATCAGACAAGAAAACAAGAC
CCCTTCAAATCTCTCAATTGACCGACGGGAAAAGTTTACCAAGTTGAACT
CCACCGAAATAACATCTGGCTTCAAGCGATCTGCTTCAGTTCCTGATTAT
CTCATGGATTCAAATAGCTTTTCTGGTAAATCATCTACGGCTGATATAGC
CCATCAAAATAGAGAAAGTTTAGCTCGGAGTTTGAAAATCATTCCAACGG
ATTCTATTAACAATCTGAGTTCAGACCGAAAAACTCATAGCTATGAACTG
CTAAGTGTACAATTGAGAGACAACGTTATCACACGATTCATTGAAAGCCG
CAGAAAGTACACAGATAAATTGAATTATTCTGATTCTAACGAACATCCTC
AACAAAATGTGGAATACGATTCGAAAAAACCTTCACCCTTATCGATTGAT
AGACGGGAAAAGTTTTGCACCCCGGAAGAATTGGACAGAATCACACCGTG
CGATAATTTGAGAGATGAAGTCGAAAATAGCGATTTGGAAAATAGTATGA
CAAGTTTATCCTCATCCTCGGAATCTTTATCATCATCAGCTCAGTTACCA
GAAAAAAAAATATTTTCAGAAAATATAAATGATGAAGATAAAATGAACGA
ATTGTATATTGATAATGCCCAAGTTAACCAAAAAGATAAATGTAAAAACG
AGTTGGTAAACAAGAGTAAAGACAGTCAGAATGAAGATGATAGTTATTCT
ATTAGTACTAGCGATTCTTCAACTGGGCTTTCTGATGAAGAGAACGACAT
TCGTAACTTTACTCCAACAACTAATAAAAACAAACAATCATATTCAATAG
ACAGATTAGAAAAATTTACACATCAAAATCACTTAGATAATCATAAAGTT
AACAAATCCAAACGTCAAGAAATAAATAATACTTCCGAATCTTCAGAATA
TGATAATTTGTTAGATAAAAACAAGAACACAAAAAATATTGATCACGATG
AAAAGTTTAATGAAATAGGGAACCTGAAAAATCAAATATCAAGACCAAAA
TCGAAAGGTGCATATTTGGATAATGAACGTTCAGAACTCTCATCAGATTT
TTCAAACTCTTCAAACTCAGAAAATGAATCTGCTTCAGATGATGATGACG
GTGAAACCCCATATAAAAACCTCGAACACCGGGAAAAGTTTACTAATAAT
AATAATTCAAATTCGAATATAACCAAAAAACCATTAGATATCCCAATGAG
TCTGGATAACGAGATGGATTCGAGTTATAGCAAGTCTTCCTCTACAAATA
ATAGCAAAAGTTCAACTAAGTCTGGAAAAATTTCAACGGATAAAGGGCAT
CCAATAAAATCAGAAGAAATTGAAAGATACGAAAAAGATATCAATCAAAA
TGCTAAACGCTTAAAATACGAACAATCGAAGGAAAAATCTGACAGCACAG
ATGAGGATGTTTCTCTGTCTTTAACCAGTTTGCCTAAAGATAACAAAGAA
ATAGAATCAGATCATTCTTCTAATCGTTTGAATACAAAGGACATCGAAAT
AATTGTCGTTGATAAAGTAAATCATGAATCAAAATCAAATGATGCAGATC
AGAGCATTTCAATAAGTACAACTGCTTCTGTTTCCAAAGATCAAAAGATA
AACCACAGATATGAGAAAAATGACAAATATGTTTCGAGAAGCTGTCAAAC
TTTGCCTTACAACAGAATACAAATAATTCCAATCAAACAAAAATCCAAAA
GTCTTGATAAGCCATTTCTTCATGGTTCTTTACCTATATTGACTCAACAT
ACGTCGGGATCTATTGGCAATATTGTTGAAAGACGTTATCATGAATTCAC
TGAGAATTGGTCCAGACAGTCACCAATTGGATCAAATAATTCAAAGGAAA
ATATGCAACCCAAAGTAGTTGATGATGAGCATATTTCCTCAGTTAAGAAT
ACTGATTTATTTACTAAAAAGAAATTTACTGAACCTTTAACAACTCGACC
TAGACCTGTCCCTTCATATTTGAGTCCAGTAAATGCTTTTCCTTATGTAC
CAACCGATCCAGAATTCAGTTCAGCAGATTCCTTGGTGAATGATTACAGT
TCAGATTATAATGTCAACGAAATTATACCTAAATATAAATCTTTACCAGA
CTTTGTCAAATCTTTGTCTACTACTAGTCTTCCTAAACAACCATTGAAAT
CAAAAACAGAGATAAAAAAGGCTATTGTTAAAAAGAAATCACCGTTTCAA
CCAATTAATCTAGATTATGGAGCTGTAGAAAATAAAAATATTCCAAGAAA
TAGATTCAAAAAGAAGACATCTCTAACATCGGTTACAACTGACAGCAGTT
ACCTTGAAAATCCTATCTTGAAAGACAAAGAAACATTTAATAATTATGCA
TCATCAGACAGCTTAGGTTCTTTAACTTCTCAGAATTTTGGAACAACCCA
TCCTAAAGCACGAATTCAAAATAATACAATAAGTCTTGATAATGTTTCAT
CAACTGACTCGTCTTCTGATTCTGATACGCAAATCGAATACCAAACGCCG
CCTTCGAGAACGATGCCGTATTTACCGAAAGTAAACTCTTTAATTAACAA
CAAAAACAAAAACTCGGGACTTCCTGTTGCAAATGGTAAACAAGAACATA
TTAAAAAAAGTAATAGTTTACCGCAAAAACGAATTCCTTCTTCCTCCGAA
TCTTCAGAATATTCTAGTACTTCTGATGACGATGATTCAGCGGAAATTCA
TCATTTATAAAATAAAACTTTTGCGAGATAGAGCAATGAGAATTATACAC
ATTTACACAAATAAAGCTTTAATATTTTGATTATATATTTTAAAACATTT
AAAATGTTTGAATTTACCTTTTTTAATTATTAAGATTTGATTTCATATAA
ATGAACTCAGAACTTTTATTTCTGATGTCGA
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protein sequence of SMED30006931-orf-1

>SMED30006931-orf-1 ID=SMED30006931-orf-1|Name=SMED30006931-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=2241bp
MSLEIKSFLEEKKSHVCSAQSDSVSSLQFDKKVKSRSYSSQFTLSDLILV
GIDRREEMRPIEHSLTVEVDLCTGIISDIKSTIHSKYHTIIHLDEMAETN
AWVRKLITYDVFVDKDVMHSIRDEAMEPNKLYLLKHKHKDQTTESMAGSY
LENVEVPQSKKLRTTAAQFNPTENDNKFVDRFVHSSNNNKARNAFFKSTN
VLRNELIIRTGNFIDRPNNNENENYSTSLSVDLTTHKIPQIVSIEDLTIY
DDDDLETPKPTENPKTEEPVMEFNLVENERTNLEVDDIPFAEESEIIDND
TIDVKRNTLSKSLQYYLPVFDTSQDVKNTDENEDSESNSNCSRSAVTTDE
NESMDQTDRPTLLGELDYESLNADEFDESITENEKDSSVKEIENYSLSSE
RNSFIFDRSFDLDDIICQENLVIHINQDTDEECINLNEVPKFHQLESGSK
IPISQFDIINVKRNVSLSPTFQHHNFHKNKSIDFPKDFIEQRKEHLEKSE
SPINEIYVFDENEIESKNDFYNYEKNLEDLASINEDAQTFTKTRSFSLKR
KSENPQDFLINDDPSFQIYPTKDDKKPSNNIYSDRKEKFLNSDLNSSIQF
FKHVSEDSKIPGDTRSSTPSSENETESVKKDETSTNSSDDSMIIKDVSSD
GAYEFRRRPQKMNCKIEEEDENIVTSADSNDDLSDITNLTEEIQMKEKDY
SSSEDLSVYSSSSTVTGSEKILRELNKTPIDSTPGHFERFLKEREERILK
ERNSTDEASSYSEGKLEHATLIRSENLVKSEEIENTNDSSYTEDTSSSSS
DFPPQINAILRQGESIEDIAKFLIYPNKENKGLIRTSGFDSQLNVIYKDE
DINTNLLQNNKINKRKFSTSSEDDTSLKVSFPQNKFIERTEKLTSEPILD
KKSFPKHKSDDESSSETINSNSDLNSDSQQELTKEFESQVEMPKKVFPPE
KLSKQHSLPIMNTGEMSSSTDSESTNSISTSTDEIQKNMDKDEKKKRAKY
IEREEKFSKNPLVKKQISLPTRKTKGSSSASESASSSMSISTSEDEINPS
NLKGNERRENQLTIKSDKYHKKITVSKKILSNLSKSSESSQSFSSSEDEP
PPPKEIKVFQATSNEKVNLCSSQSLNTISPILKSKKISSSSSSSSTSERS
RSVSISQDESQHSYVNLTQSKFVDQEKIASSESIDKKIISLNIRKEMNSS
YTESSSESVSTSSDEDPQELDERTRLNTAIEHKETYTNNNSNSSIAKKPS
DKQNNLNGESDSRYSESSSTNKSYENTKISKESSPRQNKDDNIKPGVITD
AIVLSQEEDNSYISDTNKSDESISITIKNDSIRQENKTPSNLSIDRREKF
TKLNSTEITSGFKRSASVPDYLMDSNSFSGKSSTADIAHQNRESLARSLK
IIPTDSINNLSSDRKTHSYELLSVQLRDNVITRFIESRRKYTDKLNYSDS
NEHPQQNVEYDSKKPSPLSIDRREKFCTPEELDRITPCDNLRDEVENSDL
ENSMTSLSSSSESLSSSAQLPEKKIFSENINDEDKMNELYIDNAQVNQKD
KCKNELVNKSKDSQNEDDSYSISTSDSSTGLSDEENDIRNFTPTTNKNKQ
SYSIDRLEKFTHQNHLDNHKVNKSKRQEINNTSESSEYDNLLDKNKNTKN
IDHDEKFNEIGNLKNQISRPKSKGAYLDNERSELSSDFSNSSNSENESAS
DDDDGETPYKNLEHREKFTNNNNSNSNITKKPLDIPMSLDNEMDSSYSKS
SSTNNSKSSTKSGKISTDKGHPIKSEEIERYEKDINQNAKRLKYEQSKEK
SDSTDEDVSLSLTSLPKDNKEIESDHSSNRLNTKDIEIIVVDKVNHESKS
NDADQSISISTTASVSKDQKINHRYEKNDKYVSRSCQTLPYNRIQIIPIK
QKSKSLDKPFLHGSLPILTQHTSGSIGNIVERRYHEFTENWSRQSPIGSN
NSKENMQPKVVDDEHISSVKNTDLFTKKKFTEPLTTRPRPVPSYLSPVNA
FPYVPTDPEFSSADSLVNDYSSDYNVNEIIPKYKSLPDFVKSLSTTSLPK
QPLKSKTEIKKAIVKKKSPFQPINLDYGAVENKNIPRNRFKKKTSLTSVT
TDSSYLENPILKDKETFNNYASSDSLGSLTSQNFGTTHPKARIQNNTISL
DNVSSTDSSSDSDTQIEYQTPPSRTMPYLPKVNSLINNKNKNSGLPVANG
KQEHIKKSNSLPQKRIPSSSESSEYSSTSDDDDSAEIHHL*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000018Category 4 cell
PLANA:0000020protonephridia
PLANA:0000026gut
PLANA:0000034epidermis
PLANA:0000070intestinal phagocyte
PLANA:0000101muscle cell
PLANA:0000140anterior region of the whole animal
PLANA:0002032epidermal cell
PLANA:0003116parenchymal cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 686..706
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 610..652
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1216..1230
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1767..1806
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 327..361
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 773..789
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 2194..2240
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1130..1164
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1639..1660
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1743..1766
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1448..1463
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 889..914
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 985..1011
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1743..1829
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1080..1098
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1197..1295
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1231..1281
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 888..1068
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1558..1602
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1614..1707
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1014..1049
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 915..936
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 2131..2178
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1445..1466
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1050..1068
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1197..1213
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1499..1520
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 2194..2225
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1080..1105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1500..1520
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 956..984
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1567..1601
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 773..803
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1682..1696