C-type lectin domain-containing protein

Overview
NameC-type lectin domain-containing protein
Smed IDSMED30006913
Length (bp)1560
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of C-type lectin domain-containing protein (SMED30006913) t-SNE clustered cells

Violin plots show distribution of expression levels for C-type lectin domain-containing protein (SMED30006913) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of C-type lectin domain-containing protein (SMED30006913) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for C-type lectin domain-containing protein (SMED30006913) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30006913

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 10

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30006913SMESG000036968.1 SmedASXL_009372SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
pharynxSMED30006913SMESG000036968.1 dd_Smed_v4_7581_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30006913SMESG000036968.1 dd_Smed_v4_7581_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30006913SMESG000036968.1 dd_Smed_v4_7581_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30006913SMESG000036968.1 dd_Smed_v4_7581_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30006913SMESG000036968.1 dd_Smed_v4_7581_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30006913SMESG000036968.1 dd_Smed_v6_7581_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
epidermisSMED30006913SMESG000036968.1 dd_Smed_v4_7581_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
dorsal region of the epidermisSMED30006913SMESG000036968.1 dd_Smed_v4_7581_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
ciliated epithelial cellSMED30006913SMESG000036968.1 dd_Smed_v4_7581_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
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BLAST of C-type lectin domain-containing protein vs. TrEMBL
Match: A0A1I8JDG4 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig011699g1 PE=4 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.080e-57
Identity = 131/353 (37.11%), Postives = 206/353 (58.36%), Query Frame = 3 
Query:  285 DFTRPIFERKTGEIGIFVDVYDAEPADKNEFGSRQYFLMNLIDRFYQEVSQGELFKIKGFFYKRNLLQDITIEYFHPGILLVVNTNTRESLDNLIKTYDSGRLNQAFVECFITEKVEKKIEVSNLKLKIKIFPDEISAVSSEWQLKYLPQPYLISQSDKDIRMIHIIKRXXXXXXXXXXXXXXXXXXXXEN------TSL-EFLQYLKQYSHPSQEEIKNIADANKLCKQFSINPDAQSNFYLFQKYFSLIGELQQIIRETETHVLFPLSQIRIGAENEGQHEVNLKIQKKIEILKSSLKERAPFKLFSPHLDVMIPKLDRKIWAGMIYLIPAXXXXXXXXXXXXXXYFQLGN 1322
            D  RP +ERKTGE+ I +D++DA+  +  +FGSRQYFL+NL DRF   + + EL K+KGFF KRN L+D TIEYF    L +V  ++  +L  L K Y+SGRL + FVECF+T    KK+EV+++KLKI + P E+  V +EW    +PQ Y + +++K  RM+ ++K+FQ   +            + E       TSL  FL+ L+  S    +  K + D  +  K+ + +PD +    L ++YF  +  + + +R  ET + FPL+QIR+G ENE Q +   ++ + I+ +K +L+E  PF L        +   +R + +G I L+P+ I ++ D+D+ ID YF  G+
Sbjct:    5 DGRRPFYERKTGELSIHLDIFDAKAVNPEQFGSRQYFLVNLSDRFAAMLEKTELHKLKGFFDKRNTLKDTTIEYFTDKCLCIVCPSSLSALQRLQKDYESGRLERFFVECFVTPVAMKKLEVTSMKLKIHLSPPELKKVEAEWLEGAMPQTYDMDKNEKSYRMLRLVKQFQLNYMQNSETGCCTKLREAEAKYEASLTSLINFLKMLRSNSMVPIKCAKEVIDLYE--KEKTNSPDGK----LVEQYFDTLRGIGKSVRVIETSISFPLAQIRVGGENEEQLKRKKEMFQIIQNIKEALREDQPFHLKHETYVAKVSGSERLVLSGFICLLPSVIRMMLDLDETIDEYFNSGS 351
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BLAST of C-type lectin domain-containing protein vs. TrEMBL
Match: A0A1I8IKK4 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 3.997e-57
Identity = 131/353 (37.11%), Postives = 206/353 (58.36%), Query Frame = 3 
Query:  285 DFTRPIFERKTGEIGIFVDVYDAEPADKNEFGSRQYFLMNLIDRFYQEVSQGELFKIKGFFYKRNLLQDITIEYFHPGILLVVNTNTRESLDNLIKTYDSGRLNQAFVECFITEKVEKKIEVSNLKLKIKIFPDEISAVSSEWQLKYLPQPYLISQSDKDIRMIHIIKRXXXXXXXXXXXXXXXXXXXXEN------TSL-EFLQYLKQYSHPSQEEIKNIADANKLCKQFSINPDAQSNFYLFQKYFSLIGELQQIIRETETHVLFPLSQIRIGAENEGQHEVNLKIQKKIEILKSSLKERAPFKLFSPHLDVMIPKLDRKIWAGMIYLIPAXXXXXXXXXXXXXXYFQLGN 1322
            D  RP +ERKTGE+ I +D++DA+  +  +FGSRQYFL+NL DRF   + + EL K+KGFF KRN L+D TIEYF    L +V  ++  +L  L K Y+SGRL + FVECF+T    KK+EV+++KLKI + P E+  V +EW    +PQ Y + +++K  RM+ ++K+FQ   +            + E       TSL  FL+ L+  S    +  K + D  +  K+ + +PD +    L ++YF  +  + + +R  ET + FPL+QIR+G ENE Q +   ++ + I+ +K +L+E  PF L        +   +R + +G I L+P+ I ++ D+D+ ID YF  G+
Sbjct:   63 DGRRPFYERKTGELSIHLDIFDAKAVNPEQFGSRQYFLVNLSDRFAAMLEKTELHKLKGFFDKRNTLKDTTIEYFTDKCLCIVCPSSLSALQRLQKDYESGRLERFFVECFVTPVAMKKLEVTSMKLKIHLSPPELKKVEAEWLEGAMPQTYDMDKNEKSYRMLRLVKQFQLNYMQNSETGCCTKLREAEAKYEASLTSLINFLKMLRSNSMVPIKCAKEVIDLYE--KEKTNSPDGK----LVEQYFDTLRGIGKSVRVIETSISFPLAQIRVGGENEEQLKRKKEMFQIIQNIKEALREDQPFHLKHETYVAKVSGSERLVLSGFICLLPSVIRMMLDLDETIDEYFNSGS 409
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BLAST of C-type lectin domain-containing protein vs. TrEMBL
Match: K1QA22 (Uncharacterized protein OS=Crassostrea gigas OX=29159 GN=CGI_10013731 PE=4 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 5.939e-25
Identity = 80/328 (24.39%), Postives = 159/328 (48.48%), Query Frame = 3 
Query:  279 EKDFTRPIFERKTGEIGIFVDVYDAEPADKNEFGSRQYFLMNLIDRFYQEVSQGELFKIKGFFYKRNLLQDITIEYFHPGILLVVNTNTRESLDNLIKTYDSGRLNQAFVECFITEKVEKKIEVSNLKLKIKIFPDEISAVSSEWQLKYLPQPYLISQSDKDIRMIHIIKRXXXXXXXXXXXXXXXXXXXXENTSLEFLQYLKQYSHPSQEEIKNIADANKLCKQFSINPDAQSNFYLFQKYFSLIGELQQIIRETETHVLFPLSQIRIGAENEGQHEVNLKIQKKIEILKSSLKERAPF-KLFSPHLDVMIPKLDRKIWAGMIYLIP 1259
            EKD +R  F+R+ GE+G+++ VYDA  A+   +GS  ++ M L+++ ++E+S+G   K++    ++   +   IE F  GI++ V  +  ++L+++ K + + ++N    +  I + + KK++ + + L  ++F DE +   +E  L    Q   I     D+ ++  +K FQ +         + +    +    EF+   KQ    +  +IK + +   + K     P A     +  KYF ++ +L+ ++ E E  V  PL Q+    E E Q EV  +IQ   +     L+  A   K+  P     + K +  ++ G++ L+P
Sbjct:   16 EKDASRAFFKRQEGEVGVYITVYDATAANPKAYGSEHFYFMELMEKLHEELSKGNFVKMRAALEQKGEFKGAYIERFEKGIVMAVGFDDIQALESVWKLHSTEKMNGLIQDLLINQALLKKLQATRIVLTTRMFEDEYTNCKNEL-LSRSMQRISIKTKQHDMELLQKLKNFQNQFNDDVQILQETEANFGKKLG-EFMMVAKQILPVNMLKIKTVKEFETIVKVAKGTPRAAKKLEIIDKYFDIVKKLRSVLTEIEAAVCLPLLQMHKVCETERQREVKPQIQTLAKETLQKLRADADLQKVSHPGWAKRLLKSEHDLFLGLLSLVP 341
[Close]
BLAST of C-type lectin domain-containing protein vs. TrEMBL
Match: A0A1I8IH29 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.771e-21
Identity = 88/355 (24.79%), Postives = 168/355 (47.32%), Query Frame = 3 
Query:  291 TRPIFERKTGEIGIFVDVYDAEPADKNEFGSRQYFLMNLIDRFYQEVSQGELFKIKGFFYKRNLLQDITIEYFHPGILLVVNTNTRESLDNLIKTYDSGRLNQAFVECFITEKVEKKIEVSNLKLKIKIFPDEISAVSSEWQLKYLPQPYLISQSDKDIRMIHIIKRXXXXXXXXXXXXXXXXXXXXENTSLEFLQYLKQYS-----HPSQEEIKNIADANKLCK---QFSINPDAQSNFYLFQKYFSLIGELQQIIRETETHVLFPLSQIRIGAENEGQHEVNLKIQKKIEILKSSLKERAPF-KLFSPHLDVMIPKLDRKIWAGMIYLIPAXXXXXXXXXXXXXXYFQLGNFN 1328
             +P + RK G+I I +D+ DA+P    + GSRQYFL++L+++F   + + +L +++ +F KR LL   TIE F    L ++       L  L     SG+L +  V CF+     KK+ +  L +K++ +  E+  V  EW+   +P  + +S  +K  RM+ + ++FQ   L            + E+     L  L  Y+           ++++A+  +L     + +  PDA+       +Y   + ++       E+  L PL Q+R+G E   Q E   +I   +  ++  L +  P  ++    L   I   +R +  G++ ++P ++ ++ D+D+ +D YF  G  +
Sbjct:    5 AQPHYNRKPGDIAIHLDIIDAKPLHPEQLGSRQYFLVSLVEKFAALLQKSDLLRLRRYFCKRGLLLRTTIEGFTDDCLCILCPMDLSGLTQLRSDALSGQLERELVNCFVNPVSLKKLLLKELNMKVRYWTGELDCVEQEWKDGRMPWQFDMSSDEKCCRMLRLARQFQLSRLQHPTAGSLPRLRQLESHFESNLTGLINYAKLLVGGGRLAPLESLAEFRQLRTGRPELARCPDARYA----DEYLDALSQVGMATDALESGALEPLRQLRVGGETPVQVERRSEIDNLMSEIREVLADSNPLSRMRHEALYRRISTSERALLGGLLSVLPCAVQMLADLDEALDAYFTAGGVH 355
[Close]
BLAST of C-type lectin domain-containing protein vs. TrEMBL
Match: A0A210PEQ3 (Uncharacterized protein OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT23554 PE=4 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.972e-21
Identity = 85/335 (25.37%), Postives = 162/335 (48.36%), Query Frame = 3 
Query:  285 DFTRPIFERKTGEIGIFVDVYDAEPADKNEFGSRQYFLMNLIDRFYQEVSQGELFKIKGFFYKRNLLQDITIEYFHPGILLVVNTNTRESLDNLIKTYDSGRLNQAFVECFITEKVEKKIEVSNLKLKIKIFPDEISAVSSEWQLKYLPQPYLISQSDKDIRMIHIIKRXXXXXXXXXXXXXXXXXXXXENTSLEFLQYLKQYSHPSQEEIKNIADANKLCKQFSINPDAQSNFYLFQKYFSLIGELQQIIRETETHVLFPLSQIRIGAENEGQHEVNLKIQKKIEILKSSLKERAPFKLFSPHLDVM----------IPKLDRKIWAGMIYLIP 1259
            D +RP F RK GE+G++V +YDA+  + +  GS QY+ M+L+D+ +      ++ K+K    ++ + Q   +E F  GI+L V  +  ++L+N+ K +   +L +A  +  +T  + K +  +N+ L IK+  DE +   +E   + + +  + S    D+ ++  +K+  Q+ L K    + D +   E+   EFL  +KQ        IK + +     K   +   A         + + + +L+    E E  V  PL QI    ENE Q E    ++KKI I  + ++ +A   L  P +D+           + + +++++ G+I +IP
Sbjct:    7 DASRPFFHRKEGEVGVYVKIYDAKAENAHAIGSEQYYRMDLMDKLFDIYQTADVIKMKAALDRKKMFQGAYLERFEKGIILAVGFDDIDALENVWKLHKDEKLQRALQDVLMTPSILKSLGATNITLWIKMMEDEYTNCKNELLCRKMGKVNVTSLPS-DVEVLKRLKK-YQEKLSKHAQDISDTESSVEHRLGEFLLTMKQILPTDVTSIKTLKEFETYHK---VAKGANKKTASLDAFANTLKQLRATFTEIEASVCNPLLQIHKSCENEKQRE----LKKKISI--TCIEAQA---LLKPEVDLTQVTHKDWQKKVLQREQELYRGLICVIP 327
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BLAST of C-type lectin domain-containing protein vs. Planmine SMEST
Match: SMESG000036968.1 (SMESG000036968.1)

HSP 1 Score: 677.937 bits (1748), Expect = 0.000e+0
Identity = 374/375 (99.73%), Postives = 375/375 (100.00%), Query Frame = 3 
Query:  243 MLDEFKEPLFPEEKDFTRPIFERKTGEIGIFVDVYDAEPADKNEFGSRQYFLMNLIDRFYQEVSQGELFKIKGFFYKRNLLQDITIEYFHPGILLVVNTNTRESLDNLIKTYDSGRLNQAFVECFITEKVEKKIEVSNLKLKIKIFPDEISAVSSEWQLKYLPQPYLISQSDKDIRMIHIIKRXXXXXXXXXXXXXXXXXXXXENTSLEFLQYLKQYSHPSQEEIKNIADANKLCKQFSINPDAQSNFYLFQKYFSLIGELQQIIRETETHVLFPLSQIRIGAENEGQHEVNLKIQKKIEILKSSLKERAPFKLFSPHLDVMIPKLDRKIWAGMIYLIPAXXXXXXXXXXXXXXYFQLGNFNQIIKEYEYKLKSN 1367
            MLDEFKEPLFPEEKDFTRPIFERKTGEIGIFVDVYDAEPADKNEFGSRQYFLMNLIDRFYQEVSQGELFKIKGFFYKRNLLQDITIEYFHPGILLVVNTNTRESLDNLIKTYDSGRLNQAF+ECFITEKVEKKIEVSNLKLKIKIFPDEISAVSSEWQLKYLPQPYLISQSDKDIRMIHIIKRFQQKVLFKKLNKLKDDQLKFENTSLEFLQYLKQYSHPSQEEIKNIADANKLCKQFSINPDAQSNFYLFQKYFSLIGELQQIIRETETHVLFPLSQIRIGAENEGQHEVNLKIQKKIEILKSSLKERAPFKLFSPHLDVMIPKLDRKIWAGMIYLIPASISIINDIDQQIDNYFQLGNFNQIIKEYEYKLKSN
Sbjct:    1 MLDEFKEPLFPEEKDFTRPIFERKTGEIGIFVDVYDAEPADKNEFGSRQYFLMNLIDRFYQEVSQGELFKIKGFFYKRNLLQDITIEYFHPGILLVVNTNTRESLDNLIKTYDSGRLNQAFIECFITEKVEKKIEVSNLKLKIKIFPDEISAVSSEWQLKYLPQPYLISQSDKDIRMIHIIKRFQQKVLFKKLNKLKDDQLKFENTSLEFLQYLKQYSHPSQEEIKNIADANKLCKQFSINPDAQSNFYLFQKYFSLIGELQQIIRETETHVLFPLSQIRIGAENEGQHEVNLKIQKKIEILKSSLKERAPFKLFSPHLDVMIPKLDRKIWAGMIYLIPASISIINDIDQQIDNYFQLGNFNQIIKEYEYKLKSN 375
The following BLAST results are available for this feature:
BLAST of C-type lectin domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C-type lectin domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C-type lectin domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C-type lectin domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C-type lectin domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C-type lectin domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C-type lectin domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C-type lectin domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1I8JDG41.080e-5737.11Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A1I8IKK43.997e-5737.11Uncharacterized protein OS=Macrostomum lignano OX=... [more]
K1QA225.939e-2524.39Uncharacterized protein OS=Crassostrea gigas OX=29... [more]
A0A1I8IH291.771e-2124.79Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A210PEQ32.972e-2125.37Uncharacterized protein OS=Mizuhopecten yessoensis... [more]
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BLAST of C-type lectin domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C-type lectin domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C-type lectin domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C-type lectin domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C-type lectin domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C-type lectin domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000036968.10.000e+099.73SMESG000036968.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30006913 ID=SMED30006913|Name=C-type lectin domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1560bp
TGTATATAAAAAAATTTTAAATACAATTTTGCGTGTAATAATTTGCTTTT
AAAAAATTTCTATATAAATTACAAGTCAATAGTTATCATAAATAGAATAA
ACAAATAGATTAAACAATCTGAAATTAACCAAGGCCGTCGTTATGACAAC
AGTTACTTACTTGATTAACCTATAATATTACAACCTAACTGACTTAAACT
GCCTACAATATTTAGTTAATTATTTCTGTAAAATAGTCAATAATGCTGGA
TGAATTCAAAGAGCCATTATTTCCAGAAGAGAAAGATTTCACTCGTCCAA
TATTTGAACGGAAAACGGGAGAAATTGGAATATTTGTCGATGTCTACGAT
GCTGAACCGGCCGATAAAAATGAATTCGGATCTCGTCAATATTTTTTAAT
GAACCTAATTGATCGGTTTTACCAAGAAGTATCCCAAGGTGAATTATTCA
AAATCAAAGGATTTTTTTACAAGCGCAATTTGCTACAGGATATAACTATC
GAATATTTCCATCCAGGTATTCTACTTGTGGTTAATACAAATACGAGAGA
ATCATTGGATAATTTAATTAAAACTTACGATTCCGGAAGATTAAATCAAG
CATTTGTTGAATGCTTTATCACTGAAAAAGTAGAGAAAAAAATTGAAGTT
TCTAATTTGAAATTAAAAATTAAAATATTTCCGGATGAAATCAGCGCAGT
TTCATCAGAGTGGCAATTGAAATATTTACCTCAGCCATATTTAATATCTC
AGTCAGACAAAGATATACGGATGATTCATATTATCAAACGGTTTCAACAA
AAGGTTTTATTTAAAAAATTAAATAAATTAAAGGATGATCAGTTAAAATT
CGAAAACACTTCCTTAGAGTTCCTACAATACCTCAAACAGTATTCTCATC
CCAGTCAAGAGGAAATCAAAAACATTGCAGATGCCAACAAATTGTGTAAA
CAATTCTCCATTAATCCAGATGCACAATCTAATTTTTATCTCTTTCAAAA
GTATTTCTCCCTCATTGGAGAGTTGCAACAAATAATTAGAGAAACGGAAA
CTCATGTTTTATTTCCGTTGAGTCAAATAAGGATCGGCGCTGAAAATGAA
GGCCAACACGAAGTCAACCTAAAGATCCAGAAGAAAATTGAAATTTTAAA
ATCCTCACTTAAAGAAAGAGCTCCTTTTAAATTATTCAGTCCTCACTTAG
ACGTCATGATTCCAAAACTTGACAGAAAGATTTGGGCAGGAATGATTTAT
CTCATCCCAGCTTCCATATCAATAATAAACGACATTGACCAGCAAATTGA
CAACTACTTTCAACTTGGCAATTTCAATCAAATCATAAAAGAATACGAAT
ATAAACTGAAAAGCAATTAGCTGGGACAGTGCGCCGGAGTATTAATGTTG
ACTTTATTCTTCAAATTCTAACTTATTAAATTTCTTATTTTATTTTGTTA
AATGTTTTAGATGTAACAAAGATAATTTTTTTTCATAACGAAAATTTTTA
TCCGAACTGCCTCTTTCAAGAGTTAAGGATTTTACTAAAAAAAACTGAGT
TACATATGAT
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protein sequence of SMED30006913-orf-1

>SMED30006913-orf-1 ID=SMED30006913-orf-1|Name=SMED30006913-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=376bp
MLDEFKEPLFPEEKDFTRPIFERKTGEIGIFVDVYDAEPADKNEFGSRQY
FLMNLIDRFYQEVSQGELFKIKGFFYKRNLLQDITIEYFHPGILLVVNTN
TRESLDNLIKTYDSGRLNQAFVECFITEKVEKKIEVSNLKLKIKIFPDEI
SAVSSEWQLKYLPQPYLISQSDKDIRMIHIIKRFQQKVLFKKLNKLKDDQ
LKFENTSLEFLQYLKQYSHPSQEEIKNIADANKLCKQFSINPDAQSNFYL
FQKYFSLIGELQQIIRETETHVLFPLSQIRIGAENEGQHEVNLKIQKKIE
ILKSSLKERAPFKLFSPHLDVMIPKLDRKIWAGMIYLIPASISIINDIDQ
QIDNYFQLGNFNQIIKEYEYKLKSN*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000034epidermis
PLANA:0000054dorsal region of the epidermis
PLANA:0000106ciliated epithelial cell
PLANA:0000418head
PLANA:0002032epidermal cell