C-type lectin domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30006913 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 10
Homology
BLAST of C-type lectin domain-containing protein vs. TrEMBL
Match: A0A1I8JDG4 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig011699g1 PE=4 SV=1) HSP 1 Score: 205.682 bits (522), Expect = 1.080e-57 Identity = 131/353 (37.11%), Postives = 206/353 (58.36%), Query Frame = 3 Query: 285 DFTRPIFERKTGEIGIFVDVYDAEPADKNEFGSRQYFLMNLIDRFYQEVSQGELFKIKGFFYKRNLLQDITIEYFHPGILLVVNTNTRESLDNLIKTYDSGRLNQAFVECFITEKVEKKIEVSNLKLKIKIFPDEISAVSSEWQLKYLPQPYLISQSDKDIRMIHIIKRXXXXXXXXXXXXXXXXXXXXEN------TSL-EFLQYLKQYSHPSQEEIKNIADANKLCKQFSINPDAQSNFYLFQKYFSLIGELQQIIRETETHVLFPLSQIRIGAENEGQHEVNLKIQKKIEILKSSLKERAPFKLFSPHLDVMIPKLDRKIWAGMIYLIPAXXXXXXXXXXXXXXYFQLGN 1322 D RP +ERKTGE+ I +D++DA+ + +FGSRQYFL+NL DRF + + EL K+KGFF KRN L+D TIEYF L +V ++ +L L K Y+SGRL + FVECF+T KK+EV+++KLKI + P E+ V +EW +PQ Y + +++K RM+ ++K+FQ + + E TSL FL+ L+ S + K + D + K+ + +PD + L ++YF + + + +R ET + FPL+QIR+G ENE Q + ++ + I+ +K +L+E PF L + +R + +G I L+P+ I ++ D+D+ ID YF G+ Sbjct: 5 DGRRPFYERKTGELSIHLDIFDAKAVNPEQFGSRQYFLVNLSDRFAAMLEKTELHKLKGFFDKRNTLKDTTIEYFTDKCLCIVCPSSLSALQRLQKDYESGRLERFFVECFVTPVAMKKLEVTSMKLKIHLSPPELKKVEAEWLEGAMPQTYDMDKNEKSYRMLRLVKQFQLNYMQNSETGCCTKLREAEAKYEASLTSLINFLKMLRSNSMVPIKCAKEVIDLYE--KEKTNSPDGK----LVEQYFDTLRGIGKSVRVIETSISFPLAQIRVGGENEEQLKRKKEMFQIIQNIKEALREDQPFHLKHETYVAKVSGSERLVLSGFICLLPSVIRMMLDLDETIDEYFNSGS 351
BLAST of C-type lectin domain-containing protein vs. TrEMBL
Match: A0A1I8IKK4 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1) HSP 1 Score: 206.068 bits (523), Expect = 3.997e-57 Identity = 131/353 (37.11%), Postives = 206/353 (58.36%), Query Frame = 3 Query: 285 DFTRPIFERKTGEIGIFVDVYDAEPADKNEFGSRQYFLMNLIDRFYQEVSQGELFKIKGFFYKRNLLQDITIEYFHPGILLVVNTNTRESLDNLIKTYDSGRLNQAFVECFITEKVEKKIEVSNLKLKIKIFPDEISAVSSEWQLKYLPQPYLISQSDKDIRMIHIIKRXXXXXXXXXXXXXXXXXXXXEN------TSL-EFLQYLKQYSHPSQEEIKNIADANKLCKQFSINPDAQSNFYLFQKYFSLIGELQQIIRETETHVLFPLSQIRIGAENEGQHEVNLKIQKKIEILKSSLKERAPFKLFSPHLDVMIPKLDRKIWAGMIYLIPAXXXXXXXXXXXXXXYFQLGN 1322 D RP +ERKTGE+ I +D++DA+ + +FGSRQYFL+NL DRF + + EL K+KGFF KRN L+D TIEYF L +V ++ +L L K Y+SGRL + FVECF+T KK+EV+++KLKI + P E+ V +EW +PQ Y + +++K RM+ ++K+FQ + + E TSL FL+ L+ S + K + D + K+ + +PD + L ++YF + + + +R ET + FPL+QIR+G ENE Q + ++ + I+ +K +L+E PF L + +R + +G I L+P+ I ++ D+D+ ID YF G+ Sbjct: 63 DGRRPFYERKTGELSIHLDIFDAKAVNPEQFGSRQYFLVNLSDRFAAMLEKTELHKLKGFFDKRNTLKDTTIEYFTDKCLCIVCPSSLSALQRLQKDYESGRLERFFVECFVTPVAMKKLEVTSMKLKIHLSPPELKKVEAEWLEGAMPQTYDMDKNEKSYRMLRLVKQFQLNYMQNSETGCCTKLREAEAKYEASLTSLINFLKMLRSNSMVPIKCAKEVIDLYE--KEKTNSPDGK----LVEQYFDTLRGIGKSVRVIETSISFPLAQIRVGGENEEQLKRKKEMFQIIQNIKEALREDQPFHLKHETYVAKVSGSERLVLSGFICLLPSVIRMMLDLDETIDEYFNSGS 409
BLAST of C-type lectin domain-containing protein vs. TrEMBL
Match: K1QA22 (Uncharacterized protein OS=Crassostrea gigas OX=29159 GN=CGI_10013731 PE=4 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 5.939e-25 Identity = 80/328 (24.39%), Postives = 159/328 (48.48%), Query Frame = 3 Query: 279 EKDFTRPIFERKTGEIGIFVDVYDAEPADKNEFGSRQYFLMNLIDRFYQEVSQGELFKIKGFFYKRNLLQDITIEYFHPGILLVVNTNTRESLDNLIKTYDSGRLNQAFVECFITEKVEKKIEVSNLKLKIKIFPDEISAVSSEWQLKYLPQPYLISQSDKDIRMIHIIKRXXXXXXXXXXXXXXXXXXXXENTSLEFLQYLKQYSHPSQEEIKNIADANKLCKQFSINPDAQSNFYLFQKYFSLIGELQQIIRETETHVLFPLSQIRIGAENEGQHEVNLKIQKKIEILKSSLKERAPF-KLFSPHLDVMIPKLDRKIWAGMIYLIP 1259 EKD +R F+R+ GE+G+++ VYDA A+ +GS ++ M L+++ ++E+S+G K++ ++ + IE F GI++ V + ++L+++ K + + ++N + I + + KK++ + + L ++F DE + +E L Q I D+ ++ +K FQ + + + + EF+ KQ + +IK + + + K P A + KYF ++ +L+ ++ E E V PL Q+ E E Q EV +IQ + L+ A K+ P + K + ++ G++ L+P Sbjct: 16 EKDASRAFFKRQEGEVGVYITVYDATAANPKAYGSEHFYFMELMEKLHEELSKGNFVKMRAALEQKGEFKGAYIERFEKGIVMAVGFDDIQALESVWKLHSTEKMNGLIQDLLINQALLKKLQATRIVLTTRMFEDEYTNCKNEL-LSRSMQRISIKTKQHDMELLQKLKNFQNQFNDDVQILQETEANFGKKLG-EFMMVAKQILPVNMLKIKTVKEFETIVKVAKGTPRAAKKLEIIDKYFDIVKKLRSVLTEIEAAVCLPLLQMHKVCETERQREVKPQIQTLAKETLQKLRADADLQKVSHPGWAKRLLKSEHDLFLGLLSLVP 341
BLAST of C-type lectin domain-containing protein vs. TrEMBL
Match: A0A1I8IH29 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.771e-21 Identity = 88/355 (24.79%), Postives = 168/355 (47.32%), Query Frame = 3 Query: 291 TRPIFERKTGEIGIFVDVYDAEPADKNEFGSRQYFLMNLIDRFYQEVSQGELFKIKGFFYKRNLLQDITIEYFHPGILLVVNTNTRESLDNLIKTYDSGRLNQAFVECFITEKVEKKIEVSNLKLKIKIFPDEISAVSSEWQLKYLPQPYLISQSDKDIRMIHIIKRXXXXXXXXXXXXXXXXXXXXENTSLEFLQYLKQYS-----HPSQEEIKNIADANKLCK---QFSINPDAQSNFYLFQKYFSLIGELQQIIRETETHVLFPLSQIRIGAENEGQHEVNLKIQKKIEILKSSLKERAPF-KLFSPHLDVMIPKLDRKIWAGMIYLIPAXXXXXXXXXXXXXXYFQLGNFN 1328 +P + RK G+I I +D+ DA+P + GSRQYFL++L+++F + + +L +++ +F KR LL TIE F L ++ L L SG+L + V CF+ KK+ + L +K++ + E+ V EW+ +P + +S +K RM+ + ++FQ L + E+ L L Y+ ++++A+ +L + + PDA+ +Y + ++ E+ L PL Q+R+G E Q E +I + ++ L + P ++ L I +R + G++ ++P ++ ++ D+D+ +D YF G + Sbjct: 5 AQPHYNRKPGDIAIHLDIIDAKPLHPEQLGSRQYFLVSLVEKFAALLQKSDLLRLRRYFCKRGLLLRTTIEGFTDDCLCILCPMDLSGLTQLRSDALSGQLERELVNCFVNPVSLKKLLLKELNMKVRYWTGELDCVEQEWKDGRMPWQFDMSSDEKCCRMLRLARQFQLSRLQHPTAGSLPRLRQLESHFESNLTGLINYAKLLVGGGRLAPLESLAEFRQLRTGRPELARCPDARYA----DEYLDALSQVGMATDALESGALEPLRQLRVGGETPVQVERRSEIDNLMSEIREVLADSNPLSRMRHEALYRRISTSERALLGGLLSVLPCAVQMLADLDEALDAYFTAGGVH 355
BLAST of C-type lectin domain-containing protein vs. TrEMBL
Match: A0A210PEQ3 (Uncharacterized protein OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT23554 PE=4 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.972e-21 Identity = 85/335 (25.37%), Postives = 162/335 (48.36%), Query Frame = 3 Query: 285 DFTRPIFERKTGEIGIFVDVYDAEPADKNEFGSRQYFLMNLIDRFYQEVSQGELFKIKGFFYKRNLLQDITIEYFHPGILLVVNTNTRESLDNLIKTYDSGRLNQAFVECFITEKVEKKIEVSNLKLKIKIFPDEISAVSSEWQLKYLPQPYLISQSDKDIRMIHIIKRXXXXXXXXXXXXXXXXXXXXENTSLEFLQYLKQYSHPSQEEIKNIADANKLCKQFSINPDAQSNFYLFQKYFSLIGELQQIIRETETHVLFPLSQIRIGAENEGQHEVNLKIQKKIEILKSSLKERAPFKLFSPHLDVM----------IPKLDRKIWAGMIYLIP 1259 D +RP F RK GE+G++V +YDA+ + + GS QY+ M+L+D+ + ++ K+K ++ + Q +E F GI+L V + ++L+N+ K + +L +A + +T + K + +N+ L IK+ DE + +E + + + + S D+ ++ +K+ Q+ L K + D + E+ EFL +KQ IK + + K + A + + + +L+ E E V PL QI ENE Q E ++KKI I + ++ +A L P +D+ + + +++++ G+I +IP Sbjct: 7 DASRPFFHRKEGEVGVYVKIYDAKAENAHAIGSEQYYRMDLMDKLFDIYQTADVIKMKAALDRKKMFQGAYLERFEKGIILAVGFDDIDALENVWKLHKDEKLQRALQDVLMTPSILKSLGATNITLWIKMMEDEYTNCKNELLCRKMGKVNVTSLPS-DVEVLKRLKK-YQEKLSKHAQDISDTESSVEHRLGEFLLTMKQILPTDVTSIKTLKEFETYHK---VAKGANKKTASLDAFANTLKQLRATFTEIEASVCNPLLQIHKSCENEKQRE----LKKKISI--TCIEAQA---LLKPEVDLTQVTHKDWQKKVLQREQELYRGLICVIP 327
BLAST of C-type lectin domain-containing protein vs. Planmine SMEST
Match: SMESG000036968.1 (SMESG000036968.1) HSP 1 Score: 677.937 bits (1748), Expect = 0.000e+0 Identity = 374/375 (99.73%), Postives = 375/375 (100.00%), Query Frame = 3 Query: 243 MLDEFKEPLFPEEKDFTRPIFERKTGEIGIFVDVYDAEPADKNEFGSRQYFLMNLIDRFYQEVSQGELFKIKGFFYKRNLLQDITIEYFHPGILLVVNTNTRESLDNLIKTYDSGRLNQAFVECFITEKVEKKIEVSNLKLKIKIFPDEISAVSSEWQLKYLPQPYLISQSDKDIRMIHIIKRXXXXXXXXXXXXXXXXXXXXENTSLEFLQYLKQYSHPSQEEIKNIADANKLCKQFSINPDAQSNFYLFQKYFSLIGELQQIIRETETHVLFPLSQIRIGAENEGQHEVNLKIQKKIEILKSSLKERAPFKLFSPHLDVMIPKLDRKIWAGMIYLIPAXXXXXXXXXXXXXXYFQLGNFNQIIKEYEYKLKSN 1367 MLDEFKEPLFPEEKDFTRPIFERKTGEIGIFVDVYDAEPADKNEFGSRQYFLMNLIDRFYQEVSQGELFKIKGFFYKRNLLQDITIEYFHPGILLVVNTNTRESLDNLIKTYDSGRLNQAF+ECFITEKVEKKIEVSNLKLKIKIFPDEISAVSSEWQLKYLPQPYLISQSDKDIRMIHIIKRFQQKVLFKKLNKLKDDQLKFENTSLEFLQYLKQYSHPSQEEIKNIADANKLCKQFSINPDAQSNFYLFQKYFSLIGELQQIIRETETHVLFPLSQIRIGAENEGQHEVNLKIQKKIEILKSSLKERAPFKLFSPHLDVMIPKLDRKIWAGMIYLIPASISIINDIDQQIDNYFQLGNFNQIIKEYEYKLKSN Sbjct: 1 MLDEFKEPLFPEEKDFTRPIFERKTGEIGIFVDVYDAEPADKNEFGSRQYFLMNLIDRFYQEVSQGELFKIKGFFYKRNLLQDITIEYFHPGILLVVNTNTRESLDNLIKTYDSGRLNQAFIECFITEKVEKKIEVSNLKLKIKIFPDEISAVSSEWQLKYLPQPYLISQSDKDIRMIHIIKRFQQKVLFKKLNKLKDDQLKFENTSLEFLQYLKQYSHPSQEEIKNIADANKLCKQFSINPDAQSNFYLFQKYFSLIGELQQIIRETETHVLFPLSQIRIGAENEGQHEVNLKIQKKIEILKSSLKERAPFKLFSPHLDVMIPKLDRKIWAGMIYLIPASISIINDIDQQIDNYFQLGNFNQIIKEYEYKLKSN 375 The following BLAST results are available for this feature:
BLAST of C-type lectin domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of C-type lectin domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of C-type lectin domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of C-type lectin domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of C-type lectin domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of C-type lectin domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of C-type lectin domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of C-type lectin domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of C-type lectin domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of C-type lectin domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of C-type lectin domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of C-type lectin domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of C-type lectin domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of C-type lectin domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30006913 ID=SMED30006913|Name=C-type lectin domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1560bpback to top protein sequence of SMED30006913-orf-1 >SMED30006913-orf-1 ID=SMED30006913-orf-1|Name=SMED30006913-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=376bp MLDEFKEPLFPEEKDFTRPIFERKTGEIGIFVDVYDAEPADKNEFGSRQYback to top Annotated Terms
The following terms have been associated with this transcript:
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