Tgs-1

Overview
NameTgs-1
Smed IDSMED30006900
Length (bp)1392
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Tgs-1 (SMED30006900) t-SNE clustered cells

Violin plots show distribution of expression levels for Tgs-1 (SMED30006900) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Tgs-1 (SMED30006900) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Tgs-1 (SMED30006900) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30006900

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 3

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
tail regionSMED30006900SMESG000023662.1 SmedASXL_013624SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
parenchymaSMED30006900SMESG000023662.1 dd_Smed_v4_12179_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30006900SMESG000023662.1 dd_12179dd_Smed_v4PMID:29674431
Fincher et al., 2018		whole organism asexual adult fluorescence in situ hybridization evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Tgs-1 vs. TrEMBL
Match: A0A2Z4ELZ5 (Tgs-1 OS=Schmidtea mediterranea OX=79327 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.559e-31
Identity = 120/427 (28.10%), Postives = 213/427 (49.88%), Query Frame = 2 
Query:   98 NVGGPPSDRCNQSSQSMMEYVVRSKNLFPTAFKKISQELLNRLDLELDKSFLPELTAGKRSRSRIASVVNK-RIPSRT--RQRSMSPSGSLNKAEKSWENNFEIANATIEYLLENIDLLPINFMNYSNMDK-EVKRVLDDLKGIKLSERKTEYFKRQKLFVIGETMKTIIQKLGVLLPAKISTEIESLKSLTCLKNNKIKKQKSHILAVQILLLNIPEQSRTLLQKIIKLFNILANHAALNRNKEQLYELLKLSLFDGENNYNKLQLSKDFINLSNHIFDCPSELHKIVNIYMIAIVNSNQPCELI--------------------------KGTEPSNKSTNST-IDCYFSHSKINRETNADLLLVDSSSKADAKLPPIKSGNGKIPQL---TMENKTVRRLSIRKKRSFVKTAKQVLTKTMSPFK 1276
            N+G    +    +++ ++  ++ +K  +P AF +++Q  LN L L  D+ FL +    ++ R     ++N  R   R   R RSMSPSG++   E  WE   EIA   I+++L   + LP+NF+    + K + K+++D L     ++ K E  +   L +IG++++ I+ K+G+L P  IS +I  LK L     N I K +S I AVQILLL+I   +R L+ K++++F I++    +  + E+L ++L  S F+ E N   ++L KD I L  H+F  P     I++   ++I     P  LI                          K T P  KS +   I  +F +SK N +  +  +++ + +K ++   P +     +P +   T++N+T++R  I K  S +K  K+ +   ++ FK
Sbjct:   27 NLGVDKDNNIPLTNKELVIQLLEAKEEWPMAFSRVTQNRLNELKLGFDEDFLLKQHEQRKPRRMSPMIINHNRNCGRNSNRDRSMSPSGAIKMKESKWERRSEIAMLLIDHILMKFEDLPLNFLKDQPIWKTQSKQLIDTLGKSIENKTKIEKIRESNLHIIGQSLRIILNKMGMLFPKVISEQILQLKFLRTRSGNAIVKDRSKIEAVQILLLHISTPNRILINKLLEMFRIISKIRKIQMSGEELGKILCQSFFE-ELNSESIKLCKDMIVLVEHLFLAPL---GILSALKVSINTRTAPTNLIIDFPEKKLKLNKPISTPTKPNIKIFHKPTTPITKSISGVPIVSFFPNSKWNSQQES--VILTAFNKINS---PEQIKKPSVPMIFTPTLKNQTLKRKIIVKSLSPLKWNKKCIVPNLNEFK 444
[Close]
BLAST of Tgs-1 vs. Planmine SMEST
Match: SMESG000023662.1 (SMESG000023662.1)

HSP 1 Score: 830.091 bits (2143), Expect = 0.000e+0
Identity = 411/412 (99.76%), Postives = 411/412 (99.76%), Query Frame = 2 
Query:   59 MEAQKLTFKSNVINVGGPPSDRCNQSSQSMMEYVVRSKNLFPTAFKKISQELLNRLDLELDKSFLPELTAGKRSRSRIASVVNKRIPSRTRQRSMSPSGSLNKAEKSWENNFEIANATIEYLLENIDLLPINFMNYSNMDKEVKRVLDDLKGIKLSERKTEYFKRQKLFVIGETMKTIIQKLGVLLPAKISTEIESLKSLTCLKNNKIKKQKSHILAVQILLLNIPEQSRTLLQKIIKLFNILANHAALNRNKEQLYELLKLSLFDGENNYNKLQLSKDFINLSNHIFDCPSELHKIVNIYMIAIVNSNQPCELIKGTEPSNKSTNSTIDCYFSHSKINRETNADLLLVDSSSKADAKLPPIKSGNGKIPQLTMENKTVRRLSIRKKRSFVKTAKQVLTKTMSPFKINSINQ 1294
            MEAQKLTFKSNVINVGGPPSDRCNQSSQSMMEYVVRSKNLFPTAFKKISQELLNRLDLELDKSFLPELTAGKRSRSRIASVVNKRIPSRTRQRSMSPSGSLNKAEKSWENNFEIANATIEYLLENIDLLPINFMNYSNMDKEVKRVLDDLKGIKLSERKTEY KRQKLFVIGETMKTIIQKLGVLLPAKISTEIESLKSLTCLKNNKIKKQKSHILAVQILLLNIPEQSRTLLQKIIKLFNILANHAALNRNKEQLYELLKLSLFDGENNYNKLQLSKDFINLSNHIFDCPSELHKIVNIYMIAIVNSNQPCELIKGTEPSNKSTNSTIDCYFSHSKINRETNADLLLVDSSSKADAKLPPIKSGNGKIPQLTMENKTVRRLSIRKKRSFVKTAKQVLTKTMSPFKINSINQ
Sbjct:    1 MEAQKLTFKSNVINVGGPPSDRCNQSSQSMMEYVVRSKNLFPTAFKKISQELLNRLDLELDKSFLPELTAGKRSRSRIASVVNKRIPSRTRQRSMSPSGSLNKAEKSWENNFEIANATIEYLLENIDLLPINFMNYSNMDKEVKRVLDDLKGIKLSERKTEYLKRQKLFVIGETMKTIIQKLGVLLPAKISTEIESLKSLTCLKNNKIKKQKSHILAVQILLLNIPEQSRTLLQKIIKLFNILANHAALNRNKEQLYELLKLSLFDGENNYNKLQLSKDFINLSNHIFDCPSELHKIVNIYMIAIVNSNQPCELIKGTEPSNKSTNSTIDCYFSHSKINRETNADLLLVDSSSKADAKLPPIKSGNGKIPQLTMENKTVRRLSIRKKRSFVKTAKQVLTKTMSPFKINSINQ 412
[Close]
BLAST of Tgs-1 vs. Planmine SMEST
Match: SMESG000062596.1 (SMESG000062596.1)

HSP 1 Score: 366.696 bits (940), Expect = 2.581e-123
Identity = 223/423 (52.72%), Postives = 294/423 (69.50%), Query Frame = 2 
Query:  116 SDRCNQSSQSMMEYVVRSKNLFPTAFKKISQELLNRLDLELDKSFLPELTAGKRSRSRIASVVNKRIPSRTRQRSMSPSGSLNKAEKSWENNFEIANATIEYLLENIDLLPINFMNYSNMDKEVKRVLDDLKGIKLSERKTEYFKRQKLFVIGETMKTIIQKLGVLLPAKISTEIESLKSLTCLKNNKIKKQKSHILAVQILLLNIPEQSRTLLQKIIKLFNILANHAALNRNKEQLYELLKLSLFDGENNYNKLQLSKDFINLSNHIFDCPSELHKIV---------NIYMIAIVNSN-----QPCELIKGTEPSNKSTNSTIDCYFSHSKINRETNADLLLVDSSSKADAKLPPIKSGNGKIPQLTMENKTVRRLSIRKKRSFVKTAKQV-----------------LTKTMSPFKINSIN 1291
            SD   Q +++ +++V+  K  +P+AF+K+ QELLN+L+L+LDKSFL EL    RSRS++A V+N R  SR+RQRS+SPSGSLNK EKSWE+N E+A A IE + ENI+LLP NF+N   +DKEVK +LDDLK IK +E++ E  KR +L V+GE MK I+ KLGVLLP +ISTEIE LKSL C +NN++KK+KSHILA QILLLNIPEQSR L+QKI++LFN++  H  +N N+EQLYELLK+SLFDGENNY+KLQLSKDFI+LSN IF    E++ ++         ++   A+ N +     +P EL      + KS +S+ID YFSHSK       DL+L  S+  +   +P I SGNGKIPQ   EN+T++R SIRK+ S + TAKQV                 LT+T+SPFK   +N
Sbjct:   17 SDMSKQCNEATIKFVLECKFFYPSAFRKVCQELLNQLNLQLDKSFLTELKIVTRSRSKLAKVINSRTRSRSRQRSISPSGSLNKTEKSWESNIEVACAIIEDIRENINLLPENFLNQPGVDKEVKMLLDDLKVIKTTEKRRERLKRNELTVVGEAMKKILAKLGVLLPTRISTEIELLKSLRCFQNNQLKKRKSHILATQILLLNIPEQSRNLIQKIVELFNMILEHKTVNVNEEQLYELLKISLFDGENNYSKLQLSKDFIHLSNRIFQYSPEVNDVIISKVKSKLNSVGPFAMDNCHPMIIKEPVELNNNNNNNIKSQSSSIDNYFSHSKSIGGKLPDLILKYSTPHSINPIPLIGSGNGKIPQFITENQTIKRRSIRKQNSILSTAKQVNKFISTKHLLIIEIFKALTRTISPFKTKPVN 439
[Close]
BLAST of Tgs-1 vs. Planmine SMEST
Match: SMESG000062778.1 (SMESG000062778.1)

HSP 1 Score: 277.715 bits (709), Expect = 1.588e-88
Identity = 192/448 (42.86%), Postives = 266/448 (59.38%), Query Frame = 2 
Query:   35 YKSLSDNSMEAQKLTFKSNVINVGGPPSDRCNQ-------------SSQSMMEYVVRSKNLFPTAFKKISQELLNRLDLELDKSFLPELTAGKRSRSRIASVVNKRIPSRTRQRSMSPSGSLNKAEKSWENNFEIANATIEYLLENID--------------------LLPINFMNYSNMDKEVKRVLDDLKGIKLSERKTEYFKRQKLFVIGETMKTIIQKLGVLLPAKISTEIESLKSLTCLKNNKIKKQKSHILAVQILLLNIPEQSRTLLQKIIKLFNILANHAALNRNKEQLYELLKLSLFDGENNYNKLQLSKDFINLSNHIFDCPSELHKIVNIYMIAIVNSNQPCELIKGTEPSN----------KSTNSTIDCYFSHSKINRETNADLLLVDSSSKADAKLPPIKSGNGKIPQLTMENKTVRRLSIRKKRSFVKTAKQV 1249
            YK L  N M+ Q    KSN+       SD+ N+              S+ +M+ ++ SK  +P  FK  SQELLNRL L+LDKSFL E     RSR +I+ V++ RI SR+RQR  S SGSLN+ +KSWENN E AN  IE ++ N++                     LP NF+N  N++KE K++LDDLK  K ++ + EY ++ KL VIGE +K I+ K+G L+P +IS+E+E LKSL  +++NK  K+KSHI+AVQILLLNIPE +RTLL+ II+L+  L  H  +  N EQLY+LL +SLF+GENNYNKLQLSKDFI+LS+ IF CPSEL+ I+   + + +NS QP  L    EP+           +S   +++     S  +     D L  DS+  +   +  + SG GKI     +N T  R  I+K+ S + TAK+V
Sbjct:    3 YKELFCNKMDFQIKNIKSNL---ESDKSDQVNKIFCIILSNIPFSIQSEIVMKSLLESKVFYPLEFKDASQELLNRLKLQLDKSFLIESNGVARSRLKISKVISSRIRSRSRQRVSS-SGSLNRTDKSWENNVEFANVIIEVIMNNLESKLLKFIFQTTFLYFKNYNLALPSNFLNDPNLEKESKKILDDLKVFKTAKERKEYLEKNKLNVIGEALKNILSKIGGLVPLRISSEVELLKSLMNVRDNKACKRKSHIIAVQILLLNIPEMNRTLLKSIIELYKKLMKHKTVKINNEQLYDLLNISLFNGENNYNKLQLSKDFIHLSHRIFQCPSELNDIIGSKLKSKINSKQPALLNNCQEPTTNQIVKQNNNIQSEMVSVEGPIPDSTYDNGNIRDSLFNDSALLSIRSITILASGTGKISLSPKDNTTTLRPLIKKRCSILITAKEV 446
[Close]
BLAST of Tgs-1 vs. Planmine SMEST
Match: SMESG000058876.1 (SMESG000058876.1)

HSP 1 Score: 125.561 bits (314), Expect = 1.361e-31
Identity = 117/398 (29.40%), Postives = 207/398 (52.01%), Query Frame = 2 
Query:  134 SSQSMMEYVVRSKNLFPTAFKKISQELLNRLDLELDKSFLPELTAGKRSRSRIASVVNK-RIPSRT--RQRSMSPSGSLNKAEKSWENNFEIANATIEYLLENIDLLPINFMNYSNMDK-EVKRVLDDLKGIKLSERKTEYFKRQKLFVIGETMKTIIQKLGVLLPAKISTEIESLKSLTCLKNNKIKKQKSHILAVQILLLNIPEQSRTLLQKIIKLFNILANHAALNRNKEQLYELLKLSLFDGENNYNKLQL---SKDFINL----SNHIFDCPSELHKIVNIYMIAIVNSNQPCELI--KGTEPSNKSTNST-IDCYFSHSKINRETNADLLLVDSSSKADAKLPPIKSGNGKIPQL---TMENKTVRRLSIRKKRSFVKTAKQVLTKTMSPFK 1276
            +++ ++  ++ +K  +P AF +++Q  LN L L LD+ FL +    ++ R     ++N  R   R   R RSMSPSG++   E  WE   EIA   I+++L   + LP+NF+    + K + K+++D L     ++ K E  +   L +IG++++ I+ K+G+L P  IS +I  LK L     N I K +S I AVQILLL+I   +R L+ K++++F I++    +  + E+L ++L  S F+  N+   L +    K  IN     +N I D P +  K+       I    +P   I  K T P  KS +   I  +F +SK N +  +  +++ + +K ++   P +     +P +   T++N+T++R  I K  S +K  K+ +   ++ FK
Sbjct:   19 TNKELVIQLLEAKEEWPMAFSRVTQNRLNELKLGLDEDFLLKQHEQRKPRRMSPMIINHNRNCGRNSNRDRSMSPSGAIKMKESKWERRSEIAMLLIDHILMKFEDLPLNFLKDQPIWKTQSKQLIDTLGKSIENKTKIEKIRESNLHIIGQSLRIILNKMGMLFPKVISEQILQLKFLRTRSGNAIVKDRSKIEAVQILLLHISTPNRILINKLLEMFRIISKIRKIQMSGEELGKILCQSFFEELNSETPLGILSALKVSINTRTTPTNLIIDFPEKKLKLNK----PISTPTKPNIKIFHKPTTPITKSISGVPIVSFFPNSKWNSQQES--VILTAFNKINS---PEQIKKPSVPMIFTPTLKNQTLKRKIIVKSLSPLKWNKKCIVPNLNEFK 407
[Close]
BLAST of Tgs-1 vs. Planmine SMEST
Match: SMESG000058876.1 (SMESG000058876.1)

HSP 1 Score: 125.946 bits (315), Expect = 1.739e-31
Identity = 117/390 (30.00%), Postives = 202/390 (51.79%), Query Frame = 2 
Query:  158 VVRSKNLFPTAFKKISQELLNRLDLELDKSFLPELTAGKRSRSRIASVVNK-RIPSRT--RQRSMSPSGSLNKAEKSWENNFEIANATIEYLLENIDLLPINFMNYSNMDK-EVKRVLDDLKGIKLSERKTEYFKRQKLFVIGETMKTIIQKLGVLLPAKISTEIESLKSLTCLKNNKIKKQKSHILAVQILLLNIPEQSRTLLQKIIKLFNILANHAALNRNKEQLYELLKLSLFDGENNYNKLQL---SKDFINL----SNHIFDCPSELHKIVNIYMIAIVNSNQPCELI--KGTEPSNKSTNST-IDCYFSHSKINRETNADLLLVDSSSKADAKLPPIKSGNGKIPQL---TMENKTVRRLSIRKKRSFVKTAKQVLTKTMSPFK 1276
            ++ +K  +P AF +++Q  LN L L LD+ FL +    ++ R     ++N  R   R   R RSMSPSG++   E  WE   EIA   I+++L   + LP+NF+    + K + K+++D L     ++ K E  +   L +IG++++ I+ K+G+L P  IS +I  LK L     N I K +S I AVQILLL+I   +R L+ K++++F I++    +  + E+L ++L  S F+  N+   L +    K  IN     +N I D P +  K+       I    +P   I  K T P  KS +   I  +F +SK N +  +  +++ + +K ++   P +     +P +   T++N+T++R  I K  S +K  K+ +   ++ FK
Sbjct:   47 LLEAKEEWPMAFSRVTQNRLNELKLGLDEDFLLKQHEQRKPRRMSPMIINHNRNCGRNSNRDRSMSPSGAIKMKESKWERRSEIAMLLIDHILMKFEDLPLNFLKDQPIWKTQSKQLIDTLGKSIENKTKIEKIRESNLHIIGQSLRIILNKMGMLFPKVISEQILQLKFLRTRSGNAIVKDRSKIEAVQILLLHISTPNRILINKLLEMFRIISKIRKIQMSGEELGKILCQSFFEELNSETPLGILSALKVSINTRTTPTNLIIDFPEKKLKLNK----PISTPTKPNIKIFHKPTTPITKSISGVPIVSFFPNSKWNSQQES--VILTAFNKINS---PEQIKKPSVPMIFTPTLKNQTLKRKIIVKSLSPLKWNKKCIVPNLNEFK 427
The following BLAST results are available for this feature:
BLAST of Tgs-1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Tgs-1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Tgs-1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Tgs-1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Tgs-1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Tgs-1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Tgs-1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Tgs-1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2Z4ELZ51.559e-3128.10Tgs-1 OS=Schmidtea mediterranea OX=79327 PE=2 SV=1[more]
back to top
BLAST of Tgs-1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Tgs-1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Tgs-1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Tgs-1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Tgs-1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Tgs-1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000023662.10.000e+099.76SMESG000023662.1[more]
SMESG000062596.12.581e-12352.72SMESG000062596.1[more]
SMESG000062778.11.588e-8842.86SMESG000062778.1[more]
SMESG000058876.11.361e-3129.40SMESG000058876.1[more]
SMESG000058876.11.739e-3130.00SMESG000058876.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30006900 ID=SMED30006900|Name=Tgs-1|organism=Schmidtea mediterranea sexual|type=transcript|length=1392bp
GTTCATATAAATTGTATTAGTTAATAAATATCGTTATAAAAGTCTTTCTG
ATAATTCAATGGAAGCGCAAAAGTTAACATTCAAGTCTAATGTAATAAAC
GTCGGGGGTCCACCATCCGATAGATGCAATCAATCTAGTCAGTCGATGAT
GGAGTACGTAGTAAGAAGTAAAAACCTTTTCCCAACAGCATTCAAAAAAA
TTTCCCAAGAACTTCTCAATCGTTTGGATTTGGAACTTGACAAAAGTTTC
TTGCCAGAACTCACGGCTGGTAAGCGGTCGAGATCAAGAATTGCTAGTGT
GGTCAATAAGCGTATTCCAAGTCGAACCCGACAGCGCAGCATGTCTCCAT
CTGGGTCTTTAAATAAAGCAGAAAAATCATGGGAAAATAATTTTGAAATC
GCAAATGCGACAATCGAGTATTTGTTAGAAAATATTGACTTGTTACCGAT
AAATTTCATGAATTATTCAAATATGGATAAAGAAGTAAAAAGGGTGTTGG
ATGATTTGAAAGGAATCAAGCTCTCAGAAAGGAAAACAGAATATTTCAAA
AGACAGAAGCTTTTTGTTATTGGAGAAACTATGAAGACTATTATACAAAA
GCTCGGTGTATTACTCCCCGCTAAAATTTCAACAGAAATTGAGTCTTTGA
AGTCTTTGACATGTTTAAAAAACAATAAAATAAAAAAGCAAAAGAGTCAC
ATATTGGCGGTTCAAATATTATTATTGAACATTCCTGAACAAAGCAGGAC
TTTATTACAAAAAATAATCAAATTATTCAATATATTAGCCAACCACGCAG
CTCTGAACAGAAATAAAGAACAACTATATGAGTTACTTAAACTGTCACTG
TTCGACGGGGAAAATAATTATAACAAACTCCAACTTTCTAAAGATTTCAT
AAATCTGTCGAATCACATTTTTGATTGTCCATCCGAACTCCATAAGATCG
TAAACATCTATATGATAGCCATAGTAAACTCTAATCAACCATGTGAACTG
ATCAAAGGCACTGAACCGAGTAATAAATCAACAAACTCTACAATTGATTG
CTACTTTTCTCACTCAAAGATCAATAGAGAAACCAATGCCGATCTGTTAT
TGGTTGATTCCAGTTCAAAGGCCGATGCAAAATTGCCACCAATCAAATCG
GGAAATGGAAAAATTCCTCAGTTGACTATGGAAAATAAAACAGTCAGGCG
TTTGTCTATTCGTAAAAAACGTTCATTTGTCAAAACAGCAAAGCAGGTTT
TGACCAAAACGATGTCACCATTCAAAATAAACTCAATCAACCAATGAAAA
GGAGTTTTGTACTAGATTTATTTTATTGATTCCTTTGTGACCAGATTACG
ATTATTTCTATTTGTGATTTCAATGAAAAAATTTGTTGGCGA
back to top

protein sequence of SMED30006900-orf-1

>SMED30006900-orf-1 ID=SMED30006900-orf-1|Name=SMED30006900-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=413bp
MEAQKLTFKSNVINVGGPPSDRCNQSSQSMMEYVVRSKNLFPTAFKKISQ
ELLNRLDLELDKSFLPELTAGKRSRSRIASVVNKRIPSRTRQRSMSPSGS
LNKAEKSWENNFEIANATIEYLLENIDLLPINFMNYSNMDKEVKRVLDDL
KGIKLSERKTEYFKRQKLFVIGETMKTIIQKLGVLLPAKISTEIESLKSL
TCLKNNKIKKQKSHILAVQILLLNIPEQSRTLLQKIIKLFNILANHAALN
RNKEQLYELLKLSLFDGENNYNKLQLSKDFINLSNHIFDCPSELHKIVNI
YMIAIVNSNQPCELIKGTEPSNKSTNSTIDCYFSHSKINRETNADLLLVD
SSSKADAKLPPIKSGNGKIPQLTMENKTVRRLSIRKKRSFVKTAKQVLTK
TMSPFKINSINQ*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000421tail
PLANA:0002142parenchyma
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..102