MAP/microtubule affinity-regulating kinase 3

Overview
NameMAP/microtubule affinity-regulating kinase 3
Smed IDSMED30006834
Length (bp)896
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of MAP/microtubule affinity-regulating kinase 3 (SMED30006834) t-SNE clustered cells

Violin plots show distribution of expression levels for MAP/microtubule affinity-regulating kinase 3 (SMED30006834) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of MAP/microtubule affinity-regulating kinase 3 (SMED30006834) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for MAP/microtubule affinity-regulating kinase 3 (SMED30006834) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30006834

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 8

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30006834h1SMcG0015389 SmedASXL_019367SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Smed sexual biotypeSMED30006834h1SMcG0015389 Contig46886uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30006834h1SMcG0015389 Contig46886newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
gutSMED30006834h1SMcG0015389 dd_Smed_v4_4580_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30006834h1SMcG0015389 dd_Smed_v4_4580_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30006834h1SMcG0015389 dd_Smed_v4_4580_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30006834h1SMcG0015389 dd_Smed_v4_4580_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30006834h1SMcG0015389 dd_Smed_v4_4580_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
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BLAST of MAP/microtubule affinity-regulating kinase 3 vs. TrEMBL
Match: A0A0V0J1G0 (Uncharacterized protein OS=Schistocephalus solidus OX=70667 GN=TR100555 PE=4 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.212e-27
Identity = 77/248 (31.05%), Postives = 129/248 (52.02%), Query Frame = 3 
Query:   33 MPIIQHVGKKCVTNYKFLGEICKNLKNFGVGRLVYNASEAALYKEPCYYILKSTDVHMACEDHNRSRVSAERILRGKSVGIVNIQATYLPIWVLINKSDEHMYLKAKFDEPEI-----------------VKIDNVCDYPPTLGKYIRKNYLH-NQFNPK------ILMKPFEKYMDFKSVNEPSEQDKAQIFPPYETVAADGLVIKKPTELPFIYYIKSRQYHGIKFKVYLKEKGKVPTEDQLEENA 704
            M  I+ +G+      K+L EI +NLK+ G+GR+    SE+  Y EPC+Y++K  +  M+ E   R R  AER+ RG+ +G+V+I  +Y P W L++  +     ++      +                 VK+  +   PP++ +  RK     N  + K      +L K F+    F+   EP+ ++K++IFP YE  AADGL++KK T+   IYYI+     G++++V L +K     ED+L ++A
Sbjct:    1 MTNIKFIGRPSSFYGKYLSEISRNLKSRGIGRVFVKESESKTYSEPCFYVMKKIEPLMSDESGVRCRAFAERVFRGRHLGLVHISKSYEPDWRLLSIEEGRRLQESASQMTNVVQDNKVPCVAAMPPLLAVKLQRLGKIPPSVVEAARKVECPVNSASAKEANGFLLLTKHFDDPTIFQVPIEPTTEEKSRIFPSYEVQAADGLILKKKTD-KNIYYIRRSDTPGLRWRVELAQKD---IEDELLQDA 244
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BLAST of MAP/microtubule affinity-regulating kinase 3 vs. TrEMBL
Match: A0A183T8E3 (Uncharacterized protein OS=Schistocephalus solidus OX=70667 PE=4 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 6.726e-26
Identity = 73/231 (31.60%), Postives = 120/231 (51.95%), Query Frame = 3 
Query:   84 LGEICKNLKNFGVGRLVYNASEAALYKEPCYYILKSTDVHMACEDHNRSRVSAERILRGKSVGIVNIQATYLPIWVLINKSDEHMYLKAKFDEPEI-----------------VKIDNVCDYPPTLGKYIRKNYLH-NQFNPK------ILMKPFEKYMDFKSVNEPSEQDKAQIFPPYETVAADGLVIKKPTELPFIYYIKSRQYHGIKFKVYLKEKGKVPTEDQLEENA 704
            L EI +NLK+ G+GR+    SE   Y EPC+Y++K  +  M+ E   R R  AER+ RG+ +G+V+I  +Y P W L++  +     ++      +                 VK+  +   PP++ +  RK     N  + K      +L K F+    F+   EP+ ++K++IFP YE  AADGL++KK T+   IYYI+     G++++V L +K     ED+L ++A
Sbjct:    1 LSEISRNLKSRGIGRVFVKESETKTYSEPCFYVMKKIEPLMSDESGVRCRAFAERVFRGRHLGLVHISKSYEPDWRLLSIEEGRRLQESASQMTNVVQDNKVPCVAAMPPLLAVKLQRLGKIPPSVVEAARKVECPVNSASAKEANGFLLLTKHFDDPTIFQVPIEPTTEEKSRIFPSYEVQAADGLILKKKTD-KNIYYIRRSDTPGLRWRVELAQKD---IEDELLQDA 227
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BLAST of MAP/microtubule affinity-regulating kinase 3 vs. TrEMBL
Match: A0A3P7D1V0 (Uncharacterized protein OS=Schistocephalus solidus OX=70667 GN=SSLN_LOCUS12741 PE=4 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.316e-25
Identity = 72/231 (31.17%), Postives = 120/231 (51.95%), Query Frame = 3 
Query:   84 LGEICKNLKNFGVGRLVYNASEAALYKEPCYYILKSTDVHMACEDHNRSRVSAERILRGKSVGIVNIQATYLPIWVLINKSDEHMYLKAKFDEPEI-----------------VKIDNVCDYPPTLGKYIRKNYLH-NQFNPK------ILMKPFEKYMDFKSVNEPSEQDKAQIFPPYETVAADGLVIKKPTELPFIYYIKSRQYHGIKFKVYLKEKGKVPTEDQLEENA 704
            + EI +NLK+ G+GR+    SE   Y EPC+Y++K  +  M+ E   R R  AER+ RG+ +G+V+I  +Y P W L++  +     ++      +                 VK+  +   PP++ +  RK     N  + K      +L K F+    F+   EP+ ++K++IFP YE  AADGL++KK T+   IYYI+     G++++V L +K     ED+L ++A
Sbjct:    1 MSEISRNLKSRGIGRVFVKESETKTYSEPCFYVMKKIEPLMSDESGVRCRAFAERVFRGRHLGLVHISKSYEPDWRLLSIEEGRRLQESASQMTNVVQDNKVPCVAAMPPLLAVKLQRLGKIPPSVVEAARKVECPVNSASAKEANGFLLLTKHFDDPTIFQVPIEPTTEEKSRIFPSYEVQAADGLILKKKTD-KNIYYIRRSDTPGLRWRVELAQKD---IEDELLQDA 227
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BLAST of MAP/microtubule affinity-regulating kinase 3 vs. TrEMBL
Match: A0A5J4NY78 (Small subunit ribosomal protein S34 OS=Paragonimus westermani OX=34504 GN=DEA37_0003520 PE=4 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.490e-24
Identity = 73/245 (29.80%), Postives = 121/245 (49.39%), Query Frame = 3 
Query:   33 MPIIQHVGKKCVTNY-KFLGEICKNLKNFGVGRLVYNASEAALYKEPCYYILKSTDVHMACEDHNRSRVSAERILRGKSVGIVNIQATYLPIWVLINKSDEHMYLKAKFDEPEIVK---IDNVCDYPPTLGKYIRKNYLHNQFNPK---------------------ILMKPFEKYMDFKSVN---EPSEQDKAQIFPPYETVAADGLVIKKPTELPFIYYIKSRQYHGIKFKVYLKEKGKVPTE 683
            MP +Q+VG+  ++ Y K+L EI KNLK  GVGR+V   +E A + EPCYY+L   +  M+   + R R   +RI RG+ +G V ++ T+ P W L++ ++ +  L    D  +  +   I  V   PP L  ++R+N    +   K                     +L + +E    FK V     P+  ++++I PPY   ++D LV K+  +  F YYI+     G+ +KV +  +  + TE
Sbjct:    1 MPRVQYVGRPSLSFYGKYLSEIAKNLKTRGVGRVVVKETETAKHMEPCYYVLSRIEPLMSDTSNVRCRAWGQRIFRGRDLGAVRLEGTHEPDWRLLSTTEANALLALAADSKQSAQDEHISCVAPMPPLLALHLRRNGRFPESTLKAVEGLPKCDTPETVREASGFLLLTRMWEDPTSFKVVQVPLTPNSNEQSRIHPPYTVASSDDLVRKRNLDRDF-YYIRRSDTPGLYWKV-ITTRSSIQTE 243
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BLAST of MAP/microtubule affinity-regulating kinase 3 vs. TrEMBL
Match: A0A074Z9U0 (Uncharacterized protein OS=Opisthorchis viverrini OX=6198 GN=T265_11346 PE=4 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.799e-24
Identity = 73/252 (28.97%), Postives = 117/252 (46.43%), Query Frame = 3 
Query:   33 MPIIQHVGKKCVTNY-KFLGEICKNLKNFGVGRLVYNASEAALYKEPCYYILKSTDVHMACEDHNRSRVSAERILRGKSVGIVNIQATYLPIWVLINKSDEHMYLKAKFDEPEIV-KIDNVC--DYPPTLGKYIRKNYLHNQFNPKI------------------------LMKPFEKYMDFKSVNEPSEQDKAQIFPPYETVAADGLVIKKPTELPFIYYIKSRQYHGIKFKVYLKEKGKVPTEDQLEENA 704
            MP IQ++G+  + +Y K L EI +NLK  GVGR+V   +EA+ Y EPC+Y+L+ T   ++   + R R    RI RG   G+V +  TY P W L+   +    L    D      K+ + C    PP L  ++R+   H++F   I                        L K  ++    +   EP+ Q++ +I+PPY+  +  GL+ K+  + PF YYI+     G+ +KV   +    P     + N 
Sbjct:    1 MPRIQYIGRPSLHHYGKLLSEIVRNLKTRGVGRIVVKETEASRYPEPCFYVLERTIPLLSDSSNVRCRAWGRRIFRGHDFGVVLMTNTYEPDWRLVPTCEATALLDRAADPKNAAPKLTSKCVAPMPPLLTLHLRR---HSRFPDNIIRAVSESVDPTLPQATREASGFLLLTKLPDEPTSLEIPTEPTVQEQRRIYPPYQVASEGGLIRKRELDRPF-YYIRRADTPGLLWKVVTNKDSDDPKSKNEQSNT 248
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BLAST of MAP/microtubule affinity-regulating kinase 3 vs. Planmine SMEST
Match: SMESG000052500.1 (SMESG000052500.1)

HSP 1 Score: 483.411 bits (1243), Expect = 5.050e-175
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 3 
Query:   33 MPIIQHVGKKCVTNYKFLGEICKNLKNFGVGRLVYNASEAALYKEPCYYILKSTDVHMACEDHNRSRVSAERILRGKSVGIVNIQATYLPIWVLINKSDEHMYLKAKFDEPEIVKIDNVCDYPPTLGKYIRKNYLHNQFNPKILMKPFEKYMDFKSVNEPSEQDKAQIFPPYETVAADGLVIKKPTELPFIYYIKSRQYHGIKFKVYLKEKGKVPTEDQLEENAKIPIMFNIEA 734
            MPIIQHVGKKCVTNYKFLGEICKNLKNFGVGRLVYNASEAALYKEPCYYILKSTDVHMACEDHNRSRVSAERILRGKSVGIVNIQATYLPIWVLINKSDEHMYLKAKFDEPEIVKIDNVCDYPPTLGKYIRKNYLHNQFNPKILMKPFEKYMDFKSVNEPSEQDKAQIFPPYETVAADGLVIKKPTELPFIYYIKSRQYHGIKFKVYLKEKGKVPTEDQLEENAKIPIMFNIEA
Sbjct:    1 MPIIQHVGKKCVTNYKFLGEICKNLKNFGVGRLVYNASEAALYKEPCYYILKSTDVHMACEDHNRSRVSAERILRGKSVGIVNIQATYLPIWVLINKSDEHMYLKAKFDEPEIVKIDNVCDYPPTLGKYIRKNYLHNQFNPKILMKPFEKYMDFKSVNEPSEQDKAQIFPPYETVAADGLVIKKPTELPFIYYIKSRQYHGIKFKVYLKEKGKVPTEDQLEENAKIPIMFNIEA 234
[Close]
BLAST of MAP/microtubule affinity-regulating kinase 3 vs. Planmine SMEST
Match: SMESG000052500.1 (SMESG000052500.1)

HSP 1 Score: 462.996 bits (1190), Expect = 4.242e-167
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 3 
Query:   33 MPIIQHVGKKCVTNYKFLGEICKNLKNFGVGRLVYNASEAALYKEPCYYILKSTDVHMACEDHNRSRVSAERILRGKSVGIVNIQATYLPIWVLINKSDEHMYLKAKFDEPEIVKIDNVCDYPPTLGKYIRKNYLHNQFNPKILMKPFEKYMDFKSVNEPSEQDKAQIFPPYETVAADGLVIKKPTELPFIYYIKSRQYHGIKFKVYLKEKGKVPTEDQLEENA 704
            MPIIQHVGKKCVTNYKFLGEICKNLKNFGVGRLVYNASEAALYKEPCYYILKSTDVHMACEDHNRSRVSAERILRGKSVGIVNIQATYLPIWVLINKSDEHMYLKAKFDEPEIVKIDNVCDYPPTLGKYIRKNYLHNQFNPKILMKPFEKYMDFKSVNEPSEQDKAQIFPPYETVAADGLVIKKPTELPFIYYIKSRQYHGIKFKVYLKEKGKVPTEDQLEENA
Sbjct:    1 MPIIQHVGKKCVTNYKFLGEICKNLKNFGVGRLVYNASEAALYKEPCYYILKSTDVHMACEDHNRSRVSAERILRGKSVGIVNIQATYLPIWVLINKSDEHMYLKAKFDEPEIVKIDNVCDYPPTLGKYIRKNYLHNQFNPKILMKPFEKYMDFKSVNEPSEQDKAQIFPPYETVAADGLVIKKPTELPFIYYIKSRQYHGIKFKVYLKEKGKVPTEDQLEENA 224
The following BLAST results are available for this feature:
BLAST of MAP/microtubule affinity-regulating kinase 3 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of MAP/microtubule affinity-regulating kinase 3 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of MAP/microtubule affinity-regulating kinase 3 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of MAP/microtubule affinity-regulating kinase 3 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of MAP/microtubule affinity-regulating kinase 3 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of MAP/microtubule affinity-regulating kinase 3 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of MAP/microtubule affinity-regulating kinase 3 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of MAP/microtubule affinity-regulating kinase 3 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0V0J1G01.212e-2731.05Uncharacterized protein OS=Schistocephalus solidus... [more]
A0A183T8E36.726e-2631.60Uncharacterized protein OS=Schistocephalus solidus... [more]
A0A3P7D1V01.316e-2531.17Uncharacterized protein OS=Schistocephalus solidus... [more]
A0A5J4NY781.490e-2429.80Small subunit ribosomal protein S34 OS=Paragonimus... [more]
A0A074Z9U09.799e-2428.97Uncharacterized protein OS=Opisthorchis viverrini ... [more]
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BLAST of MAP/microtubule affinity-regulating kinase 3 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of MAP/microtubule affinity-regulating kinase 3 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of MAP/microtubule affinity-regulating kinase 3 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of MAP/microtubule affinity-regulating kinase 3 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of MAP/microtubule affinity-regulating kinase 3 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of MAP/microtubule affinity-regulating kinase 3 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000052500.15.050e-175100.00SMESG000052500.1[more]
SMESG000052500.14.242e-167100.00SMESG000052500.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30006834 ID=SMED30006834|Name=MAP/microtubule affinity-regulating kinase 3|organism=Schmidtea mediterranea sexual|type=transcript|length=896bp
TTTGAATAATCGTGAAAAATTATAAATTTTAAATGCCAATTATTCAACAT
GTTGGTAAGAAATGTGTCACTAATTATAAGTTTTTAGGCGAAATTTGTAA
GAATTTAAAGAATTTTGGTGTTGGTAGATTAGTTTATAATGCATCAGAAG
CTGCTTTATACAAAGAGCCATGCTATTATATACTGAAAAGCACCGATGTT
CACATGGCATGTGAAGATCATAATAGAAGTAGAGTTAGTGCCGAACGAAT
ATTACGTGGGAAGAGTGTTGGGATCGTAAATATTCAAGCTACTTATCTTC
CAATATGGGTTCTAATTAATAAATCGGATGAACACATGTATCTGAAAGCT
AAATTTGATGAACCTGAAATTGTTAAGATAGATAATGTGTGTGATTATCC
ACCAACTCTAGGAAAGTATATCAGAAAAAATTATTTACATAACCAATTTA
ACCCAAAAATTTTGATGAAACCTTTTGAAAAGTATATGGATTTCAAGAGT
GTCAACGAGCCTTCTGAACAAGACAAAGCGCAAATTTTCCCGCCTTATGA
GACAGTTGCTGCCGACGGACTCGTGATAAAAAAGCCAACCGAATTGCCAT
TCATATACTACATTAAATCAAGGCAATATCATGGAATAAAATTTAAAGTT
TATTTGAAAGAGAAAGGAAAAGTTCCTACTGAAGACCAATTGGAAGAAAA
TGCTAAAATCCCAATTATGTTCAACATAGAAGCGCTTCTCAGTTCATTAT
AGTTGAAAGTTTAAATGAAAAGAAATGTCTAACTTCTTTTACCTTGGACG
GGAGGCACCCAGTTTGGCAGTTATTGATCTGAAGCATTTTGTGATTTTAG
AAAGAGGTATTAGTTTTATTTGTTTGAAAATAAAATGTTATTTGAC
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protein sequence of SMED30006834-orf-1

>SMED30006834-orf-1 ID=SMED30006834-orf-1|Name=SMED30006834-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=240bp
MPIIQHVGKKCVTNYKFLGEICKNLKNFGVGRLVYNASEAALYKEPCYYI
LKSTDVHMACEDHNRSRVSAERILRGKSVGIVNIQATYLPIWVLINKSDE
HMYLKAKFDEPEIVKIDNVCDYPPTLGKYIRKNYLHNQFNPKILMKPFEK
YMDFKSVNEPSEQDKAQIFPPYETVAADGLVIKKPTELPFIYYIKSRQYH
GIKFKVYLKEKGKVPTEDQLEENAKIPIMFNIEALLSSL*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000429neoblast
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR032053MRP-S34
Vocabulary: cellular component
TermDefinition
GO:0005739mitochondrion
Vocabulary: molecular function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0016740transferase activity
GO:0016301kinase activity
Vocabulary: biological process
TermDefinition
GO:0016310phosphorylation
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032053Mitochondrial 28S ribosomal protein S34PFAMPF16053MRP-S34coord: 16..133
e-value: 5.4E-25
score: 87.5
IPR032053Mitochondrial 28S ribosomal protein S34PANTHERPTHR28589FAMILY NOT NAMEDcoord: 12..137