slc40a-1
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny AppSub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30006791 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 4
Homology
BLAST of slc40a-1 vs. Ensembl Human
Match: SLC40A1 (solute carrier family 40 member 1 [Source:HGNC Symbol;Acc:HGNC:10909]) HSP 1 Score: 81.2629 bits (199), Expect = 1.659e-17 Identity = 39/96 (40.62%), Postives = 65/96 (67.71%), Query Frame = 3 Query: 45 DNNAKSRNCLG----FLTETKYLFYYCALISSWDDRSWYFLMGIYLVVLDPSNLILTAIFGFLGSGIVLLVGSVIGSWTDRSSRLKAAVIVLIVRN 320 D+N + R C G +LT K+L Y +S+W DR W+F + ++LV L ++L+LTA++G + +G VL++G++IG W D+++RLK A L+V+N Sbjct: 6 DHN-RQRGCCGSLADYLTSAKFLLYLGHSLSTWGDRMWHFAVSVFLVELYGNSLLLTAVYGLVVAGSVLVLGAIIGDWVDKNARLKVAQTSLVVQN 100
BLAST of slc40a-1 vs. Ensembl Human
Match: SLC40A1 (solute carrier family 40 member 1 [Source:HGNC Symbol;Acc:HGNC:10909]) HSP 1 Score: 81.6481 bits (200), Expect = 2.585e-16 Identity = 39/96 (40.62%), Postives = 65/96 (67.71%), Query Frame = 3 Query: 45 DNNAKSRNCLG----FLTETKYLFYYCALISSWDDRSWYFLMGIYLVVLDPSNLILTAIFGFLGSGIVLLVGSVIGSWTDRSSRLKAAVIVLIVRN 320 D+N + R C G +LT K+L Y +S+W DR W+F + ++LV L ++L+LTA++G + +G VL++G++IG W D+++RLK A L+V+N Sbjct: 6 DHN-RQRGCCGSLADYLTSAKFLLYLGHSLSTWGDRMWHFAVSVFLVELYGNSLLLTAVYGLVVAGSVLVLGAIIGDWVDKNARLKVAQTSLVVQN 100
BLAST of slc40a-1 vs. Ensembl Zebrafish
Match: si:ch211-254p10.2 (si:ch211-254p10.2 [Source:ZFIN;Acc:ZDB-GENE-100922-17]) HSP 1 Score: 69.707 bits (169), Expect = 1.661e-14 Identity = 33/78 (42.31%), Postives = 50/78 (64.10%), Query Frame = 3 Query: 66 NCLGFLTETKYLFYYCALISSWDDRSWYFLMGIYLVVLDPSNLILTAIFGFLGSGIVLLVGSVIGSWTDRSSRLKAAV 299 + L +L K+L Y +S W DR W+F + ++L+ L NL+LTAIFG + +G VLL+G++IG W DR+ R K + Sbjct: 15 SALIYLKGPKFLIYVSGALSMWGDRMWHFAISVFLIELYGHNLLLTAIFGLVVAGSVLLLGALIGDWVDRNPRNKGKI 92
BLAST of slc40a-1 vs. Ensembl Zebrafish
Match: slc40a1 (solute carrier family 40 member 1 [Source:NCBI gene;Acc:58153]) HSP 1 Score: 73.9442 bits (180), Expect = 5.899e-14 Identity = 34/81 (41.98%), Postives = 54/81 (66.67%), Query Frame = 3 Query: 78 FLTETKYLFYYCALISSWDDRSWYFLMGIYLVVLDPSNLILTAIFGFLGSGIVLLVGSVIGSWTDRSSRLKAAVIVLIVRN 320 F K+L Y +S+W DR W F + ++LV L ++L+LTA++G + +G VLL+G++IG W D++ RLK A L+V+N Sbjct: 17 FFKSAKFLIYVGHALSTWGDRMWNFAVAVFLVELYGNSLLLTAVYGLVVAGSVLLLGAIIGDWVDKNPRLKVAQTSLVVQN 97
BLAST of slc40a-1 vs. Ensembl Zebrafish
Match: si:ch211-254p10.2 (si:ch211-254p10.2 [Source:ZFIN;Acc:ZDB-GENE-100922-17]) HSP 1 Score: 60.4622 bits (145), Expect = 1.077e-9 Identity = 29/62 (46.77%), Postives = 43/62 (69.35%), Query Frame = 3 Query: 135 DRSWYFLMGIYLVVLDPSNLILTAIFGFLGSGIVLLVGSVIGSWTDRSSRLKAAVIVLIVRN 320 DR W+F + ++L+ L NL+LTAIFG + +G VLL+G++IG W DR+ R K A L ++N Sbjct: 2 DRMWHFAISVFLIELYGHNLLLTAIFGLVVAGSVLLLGALIGDWVDRNPRNKVAHASLFIQN 63
BLAST of slc40a-1 vs. Ensembl Xenopus
Match: slc40a1 (solute carrier family 40 (iron-regulated transporter), member 1 [Source:NCBI gene;Acc:100036732]) HSP 1 Score: 79.337 bits (194), Expect = 1.311e-15 Identity = 39/95 (41.05%), Postives = 62/95 (65.26%), Query Frame = 3 Query: 48 NNAKSRNCLG----FLTETKYLFYYCALISSWDDRSWYFLMGIYLVVLDPSNLILTAIFGFLGSGIVLLVGSVIGSWTDRSSRLKAAVIVLIVRN 320 + ++ C G +LT K+L Y +S+W DR W+F + ++LV L ++L+LTA++G + +G VLL+G+VIG W D++ RLK A LIV+N Sbjct: 5 GDQENAGCCGSIATYLTSAKFLMYLGHALSTWGDRMWHFAVSLFLVELYGNSLLLTAVYGLVVAGSVLLLGAVIGDWVDKNPRLKVAQTSLIVQN 99
BLAST of slc40a-1 vs. Ensembl Xenopus
Match: ENSXETT00000025368.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:9:39503522:39523316:1 gene:ENSXETG00000014425.1 transcript:ENSXETT00000025368.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 69.707 bits (169), Expect = 1.804e-12 Identity = 41/125 (32.80%), Postives = 76/125 (60.80%), Query Frame = 3 Query: 126 SWDDRSWYFLMGIYLVVLDPSNLILTAIFGFLGSGIVLLVGSVIGSWTDRSSRLKAAVIVLIVRNXXXXXXXXXXXXXXFFYDFVILTDKAPTFRIISQSLLVIFGVLAHVAGLVNNNLLSKDWL 500 S DR W+F + ++LV L +L+LTA++GF+ SG +LL+G+VIG W D++ R+KAA L+++N+S + C + L +V + D V T + + L+++ +A++ ++ +DW+ Sbjct: 22 SLGDRMWHFAVSVFLVELYGHSLLLTAVYGFVVSGSILLLGAVIGDWVDKNERIKAARTSLVIQNISIMFCGIILMMVFRYKDQV--TTQHKWLLTVCYILVILIATIANIGSTATGIIIERDWI 144
BLAST of slc40a-1 vs. Ensembl Xenopus
Match: ENSXETT00000025371.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:9:39503308:39523316:1 gene:ENSXETG00000014425.1 transcript:ENSXETT00000025371.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 69.3218 bits (168), Expect = 2.395e-12 Identity = 40/122 (32.79%), Postives = 75/122 (61.48%), Query Frame = 3 Query: 135 DRSWYFLMGIYLVVLDPSNLILTAIFGFLGSGIVLLVGSVIGSWTDRSSRLKAAVIVLIVRNXXXXXXXXXXXXXXFFYDFVILTDKAPTFRIISQSLLVIFGVLAHVAGLVNNNLLSKDWL 500 DR W+F + ++LV L +L+LTA++GF+ SG +LL+G+VIG W D++ R+KAA L+++N+S + C + L +V + D V T + + L+++ +A++ ++ +DW+ Sbjct: 28 DRMWHFAVSVFLVELYGHSLLLTAVYGFVVSGSILLLGAVIGDWVDKNERIKAARTSLVIQNISIMFCGIILMMVFRYKDQV--TTQHKWLLTVCYILVILIATIANIGSTATGIIIERDWI 147
BLAST of slc40a-1 vs. Ensembl Xenopus
Match: cul4a (cullin 4A [Source:Xenbase;Acc:XB-GENE-1014775]) HSP 1 Score: 67.3958 bits (163), Expect = 1.225e-11 Identity = 32/80 (40.00%), Postives = 48/80 (60.00%), Query Frame = 3 Query: 81 LTETKYLFYYCALISSWDDRSWYFLMGIYLVVLDPSNLILTAIFGFLGSGIVLLVGSVIGSWTDRSSRLKAAVIVLIVRN 320 L ++L Y +S W DR W+F + ++L+ L NL+LTA+FG + +G VL+ G+ IG W DR R K A L ++N Sbjct: 12 LVNPRFLIYVSCALSIWGDRMWHFAVSVFLIELYGHNLLLTAVFGLVVAGSVLVFGAFIGDWIDRKPRNKVAHASLFIQN 91
BLAST of slc40a-1 vs. Ensembl Xenopus
Match: cul4a (cullin 4A [Source:Xenbase;Acc:XB-GENE-1014775]) HSP 1 Score: 66.2402 bits (160), Expect = 2.735e-11 Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 3 Query: 93 KYLFYYCALISSWDDRSWYFLMGIYLVVLDPSNLILTAIFGFLGSGIVLLVGSVIGSWTDRSSRLKAAVIVLIVRN 320 ++L Y +S W DR W+F + ++L+ L NL+LTA+FG + +G VL+ G+ IG W DR R K A L ++N Sbjct: 2 RFLIYVSCALSIWGDRMWHFAVSVFLIELYGHNLLLTAVFGLVVAGSVLVFGAFIGDWIDRKPRNKVAHASLFIQN 77
BLAST of slc40a-1 vs. Ensembl Mouse
Match: Slc40a1 (solute carrier family 40 (iron-regulated transporter), member 1 [Source:MGI Symbol;Acc:MGI:1315204]) HSP 1 Score: 78.5666 bits (192), Expect = 2.079e-15 Identity = 36/95 (37.89%), Postives = 61/95 (64.21%), Query Frame = 3 Query: 48 NNAKSRNCLG----FLTETKYLFYYCALISSWDDRSWYFLMGIYLVVLDPSNLILTAIFGFLGSGIVLLVGSVIGSWTDRSSRLKAAVIVLIVRN 320 + C G +LT K+L Y +S+W DR W+F + ++LV L ++L+LTA++G + +G VL++G++IG W D+++RLK A L+V+N Sbjct: 6 DQTHQEGCCGSLANYLTSAKFLLYLGHSLSTWGDRMWHFAVSVFLVELYGNSLLLTAVYGLVVAGSVLVLGAIIGDWVDKNARLKVAQTSLVVQN 100
BLAST of slc40a-1 vs. Ensembl Mouse
Match: Slc40a1 (solute carrier family 40 (iron-regulated transporter), member 1 [Source:MGI Symbol;Acc:MGI:1315204]) HSP 1 Score: 46.595 bits (109), Expect = 1.321e-6 Identity = 20/51 (39.22%), Postives = 35/51 (68.63%), Query Frame = 3 Query: 78 FLTETKYLFYYCALISSWDDRSWYFLMGIYLVVLDPSNLILTAIFGFLGSG 230 +LT K+L Y +S+W DR W+F + ++LV L ++L+LTA++G + +G Sbjct: 20 YLTSAKFLLYLGHSLSTWGDRMWHFAVSVFLVELYGNSLLLTAVYGLVVAG 70
BLAST of slc40a-1 vs. Ensembl Mouse
Match: Slc40a1 (solute carrier family 40 (iron-regulated transporter), member 1 [Source:MGI Symbol;Acc:MGI:1315204]) HSP 1 Score: 46.595 bits (109), Expect = 1.321e-6 Identity = 20/51 (39.22%), Postives = 35/51 (68.63%), Query Frame = 3 Query: 78 FLTETKYLFYYCALISSWDDRSWYFLMGIYLVVLDPSNLILTAIFGFLGSG 230 +LT K+L Y +S+W DR W+F + ++LV L ++L+LTA++G + +G Sbjct: 20 YLTSAKFLLYLGHSLSTWGDRMWHFAVSVFLVELYGNSLLLTAVYGLVVAG 70
BLAST of slc40a-1 vs. Ensembl Mouse
Match: Slc40a1 (solute carrier family 40 (iron-regulated transporter), member 1 [Source:MGI Symbol;Acc:MGI:1315204]) HSP 1 Score: 46.595 bits (109), Expect = 1.321e-6 Identity = 20/51 (39.22%), Postives = 35/51 (68.63%), Query Frame = 3 Query: 78 FLTETKYLFYYCALISSWDDRSWYFLMGIYLVVLDPSNLILTAIFGFLGSG 230 +LT K+L Y +S+W DR W+F + ++LV L ++L+LTA++G + +G Sbjct: 20 YLTSAKFLLYLGHSLSTWGDRMWHFAVSVFLVELYGNSLLLTAVYGLVVAG 70
BLAST of slc40a-1 vs. UniProt/SwissProt
Match: sp|Q9NP59|S40A1_HUMAN (Solute carrier family 40 member 1 OS=Homo sapiens OX=9606 GN=SLC40A1 PE=1 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 1.241e-15 Identity = 39/96 (40.62%), Postives = 65/96 (67.71%), Query Frame = 3 Query: 45 DNNAKSRNCLG----FLTETKYLFYYCALISSWDDRSWYFLMGIYLVVLDPSNLILTAIFGFLGSGIVLLVGSVIGSWTDRSSRLKAAVIVLIVRN 320 D+N + R C G +LT K+L Y +S+W DR W+F + ++LV L ++L+LTA++G + +G VL++G++IG W D+++RLK A L+V+N Sbjct: 6 DHN-RQRGCCGSLADYLTSAKFLLYLGHSLSTWGDRMWHFAVSVFLVELYGNSLLLTAVYGLVVAGSVLVLGAIIGDWVDKNARLKVAQTSLVVQN 100
BLAST of slc40a-1 vs. UniProt/SwissProt
Match: sp|Q9JHI9|S40A1_MOUSE (Solute carrier family 40 member 1 OS=Mus musculus OX=10090 GN=Slc40a1 PE=1 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 1.454e-14 Identity = 36/95 (37.89%), Postives = 61/95 (64.21%), Query Frame = 3 Query: 48 NNAKSRNCLG----FLTETKYLFYYCALISSWDDRSWYFLMGIYLVVLDPSNLILTAIFGFLGSGIVLLVGSVIGSWTDRSSRLKAAVIVLIVRN 320 + C G +LT K+L Y +S+W DR W+F + ++LV L ++L+LTA++G + +G VL++G++IG W D+++RLK A L+V+N Sbjct: 6 DQTHQEGCCGSLANYLTSAKFLLYLGHSLSTWGDRMWHFAVSVFLVELYGNSLLLTAVYGLVVAGSVLVLGAIIGDWVDKNARLKVAQTSLVVQN 100
BLAST of slc40a-1 vs. UniProt/SwissProt
Match: sp|Q923U9|S40A1_RAT (Solute carrier family 40 member 1 OS=Rattus norvegicus OX=10116 GN=Slc40a1 PE=2 SV=2) HSP 1 Score: 78.1814 bits (191), Expect = 1.652e-14 Identity = 36/95 (37.89%), Postives = 60/95 (63.16%), Query Frame = 3 Query: 48 NNAKSRNCLG----FLTETKYLFYYCALISSWDDRSWYFLMGIYLVVLDPSNLILTAIFGFLGSGIVLLVGSVIGSWTDRSSRLKAAVIVLIVRN 320 + C G +LT K+L Y +S+W DR W+F + ++LV L + L+LTA++G + +G VL++G++IG W D+++RLK A L+V+N Sbjct: 6 DQTHQEGCCGSLANYLTSAKFLLYLGHSLSTWGDRMWHFAVSVFLVELYGNGLLLTAVYGLVVAGSVLVLGAIIGDWVDKNARLKVAQTSLVVQN 100
BLAST of slc40a-1 vs. UniProt/SwissProt
Match: sp|Q9I9R3|S40A1_DANRE (Solute carrier family 40 member 1 OS=Danio rerio OX=7955 GN=slc40a1 PE=2 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 4.494e-13 Identity = 34/81 (41.98%), Postives = 54/81 (66.67%), Query Frame = 3 Query: 78 FLTETKYLFYYCALISSWDDRSWYFLMGIYLVVLDPSNLILTAIFGFLGSGIVLLVGSVIGSWTDRSSRLKAAVIVLIVRN 320 F K+L Y +S+W DR W F + ++LV L ++L+LTA++G + +G VLL+G++IG W D++ RLK A L+V+N Sbjct: 17 FFKSAKFLIYVGHALSTWGDRMWNFAVAVFLVELYGNSLLLTAVYGLVVAGSVLLLGAIIGDWVDKNPRLKVAQTSLVVQN 97
BLAST of slc40a-1 vs. TrEMBL
Match: A0A0H3YJL2 (Solute carrier family 40 protein (Fragment) OS=Schmidtea mediterranea OX=79327 GN=slc40a-1 PE=2 SV=1) HSP 1 Score: 298.516 bits (763), Expect = 1.816e-93 Identity = 165/167 (98.80%), Postives = 165/167 (98.80%), Query Frame = 3 Query: 3 SSMSAYSEIKYSTIDNNAKSRNCLGFLTETKYLFYYCALISSWDDRSWYFLMGIYLVVLDPSNLILTAIFGFLGSGIVLLVGSVIGSWTDRSSRLKAAVIVLIVRNXXXXXXXXXXXXXXFFYDFVILTDKAPTFRIISQSLLVIFGVLAHVAGLVNNNLLSKDWLP 503 SSMSAYSEIKYSTIDNNAKSRNCLGFLTETK LFYYCALISSWDDRSWYFLMGIYLVVLDPSNLILTAIFGFL SGIVLLVGSVIGSWTDRSSRLKAAVIVLIVRNLSTLVCSVSLCVVLFFYDFVILTDKAPTFRIISQSLLVIFGVLAHVAGLVNNNLLSKDWLP Sbjct: 9 SSMSAYSEIKYSTIDNNAKSRNCLGFLTETKSLFYYCALISSWDDRSWYFLMGIYLVVLDPSNLILTAIFGFLASGIVLLVGSVIGSWTDRSSRLKAAVIVLIVRNLSTLVCSVSLCVVLFFYDFVILTDKAPTFRIISQSLLVIFGVLAHVAGLVNNNLLSKDWLP 175
BLAST of slc40a-1 vs. TrEMBL
Match: A0A2D4GFZ1 (Solute carrier family 40 protein OS=Micrurus corallinus OX=54390 PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 2.646e-15 Identity = 38/92 (41.30%), Postives = 63/92 (68.48%), Query Frame = 3 Query: 45 DNNAKSRNCLGFLTETKYLFYYCALISSWDDRSWYFLMGIYLVVLDPSNLILTAIFGFLGSGIVLLVGSVIGSWTDRSSRLKAAVIVLIVRN 320 ++ +C+ +LT K L Y+ +S+W DR W+F + ++LV L ++L+LTA++G + +G VLL+G++IG W D++SRLK A LIV+N Sbjct: 10 NSRGCCESCMNYLTSAKVLLYFGHALSTWGDRMWHFAVSLFLVELYGNSLLLTAVYGLVVAGSVLLLGAIIGDWVDKNSRLKVAQTSLIVQN 101
BLAST of slc40a-1 vs. TrEMBL
Match: A0A0B8RQ38 (Solute carrier family 40 protein OS=Boiga irregularis OX=92519 PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 9.583e-15 Identity = 40/99 (40.40%), Postives = 68/99 (68.69%), Query Frame = 3 Query: 30 KYSTIDNNAKS--RNCLGFLTETKYLFYYCALISSWDDRSWYFLMGIYLVVLDPSNLILTAIFGFLGSGIVLLVGSVIGSWTDRSSRLKAAVIVLIVRN 320 + +T N++ +C+ +LT K L Y+ +S+W DR W+F + ++LV L ++L+LTA++G + +G VLL+G++IG W D++SRLK A + LIV+N Sbjct: 3 RSATEQQNSRGCCESCINYLTSAKVLLYFGHALSTWGDRMWHFAVSVFLVELYGNSLLLTAVYGLVVAGSVLLLGAIIGDWVDKNSRLKVAQMSLIVQN 101
BLAST of slc40a-1 vs. TrEMBL
Match: C3Y4G3 (Solute carrier family 40 protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_125612 PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.260e-14 Identity = 51/141 (36.17%), Postives = 79/141 (56.03%), Query Frame = 3 Query: 78 FLTETKYLFYYCALISSWDDRSWYFLMGIYLVVLDPSNLILTAIFGFLGSGIVLLVGSVIGSWTDRSSRLKAAVIVLIVRNXXXXXXXXXXXXXXFFYDFVILTDKAPTFRIISQSLLVIFGVLAHVAGLVNNNLLSKDWL 500 F+ T +L Y A +S+W DR W F + ++L+ L P +L LTA++GF S VLL+G+VIG W DR++RL A I L+V+N ++V + + Y I + Q +L+ V+A +AG L+KDW+ Sbjct: 41 FVQSTTFLVYTEATLSTWGDRMWSFAVALFLIELSPGSLRLTAVYGFSKSCAVLLLGAVIGDWVDRTARLTAVRIALVVQN-GSVVLCSVVLALTLIYRAEIENLQGGWLMTFCQVVLITLAVVAILAGQATRICLNKDWV 180
BLAST of slc40a-1 vs. TrEMBL
Match: A0A2J8PRY4 (Solute carrier family 40 protein (Fragment) OS=Pan troglodytes OX=9598 GN=CK820_G0001737 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 2.361e-14 Identity = 39/96 (40.62%), Postives = 65/96 (67.71%), Query Frame = 3 Query: 45 DNNAKSRNCLG----FLTETKYLFYYCALISSWDDRSWYFLMGIYLVVLDPSNLILTAIFGFLGSGIVLLVGSVIGSWTDRSSRLKAAVIVLIVRN 320 D+N + R C G +LT K+L Y +S+W DR W+F + ++LV L ++L+LTA++G + +G VL++G++IG W D+++RLK A L+V+N Sbjct: 6 DHN-RQRGCCGSLADYLTSAKFLLYLGHSLSTWGDRMWHFAVSVFLVELYGNSLLLTAVYGLVVAGSVLVLGAIIGDWVDKNARLKVAQTSLVVQN 100
BLAST of slc40a-1 vs. Ensembl Cavefish
Match: slc40a1 (solute carrier family 40 member 1 [Source:NCBI gene;Acc:103025312]) HSP 1 Score: 77.0258 bits (188), Expect = 4.757e-15 Identity = 37/97 (38.14%), Postives = 58/97 (59.79%), Query Frame = 3 Query: 42 IDNNAKSRNCL----GFLTETKYLFYYCALISSWDDRSWYFLMGIYLVVLDPSNLILTAIFGFLGSGIVLLVGSVIGSWTDRSSRLKAAVIVLIVRN 320 ++N + C F K+L Y +S+W DR W F + ++LV L NL+LTA++G + +G VLL+G++IG W D++ RLK A L+V+N Sbjct: 1 MENGKPKKPCCETVRDFFASAKFLIYLGHALSTWGDRMWNFAVAVFLVELYGDNLLLTAVYGLVVAGSVLLLGAIIGDWVDKNPRLKVAQTSLLVQN 97
BLAST of slc40a-1 vs. Ensembl Sea Lamprey
Match: slc40a1 (solute carrier family 40 member 1 [Source:NCBI gene;Acc:58153]) HSP 1 Score: 72.7886 bits (177), Expect = 2.141e-14 Identity = 35/85 (41.18%), Postives = 56/85 (65.88%), Query Frame = 3 Query: 66 NCLGFLTETKYLFYYCALISSWDDRSWYFLMGIYLVVLDPSNLILTAIFGFLGSGIVLLVGSVIGSWTDRSSRLKAAVIVLIVRN 320 N L FL ++ L Y C +S+W DR W+F + ++LV L ++L+LTA +G + + VLL G++IG W D +SR+K A L+++N Sbjct: 14 NTLRFLRSSRCLIYICHALSTWGDRMWHFAVALFLVELYGNSLLLTAAYGLVVAFSVLLCGALIGHWVDTNSRIKVAQTSLVIQN 98
BLAST of slc40a-1 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000008571.1 (pep scaffold:Pmarinus_7.0:GL483357:10330:15319:1 gene:ENSPMAG00000007762.1 transcript:ENSPMAT00000008571.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 65.855 bits (159), Expect = 1.073e-12 Identity = 42/159 (26.42%), Postives = 80/159 (50.31%), Query Frame = 3 Query: 45 DNNAKSRNC---LGFLTETKYLFYYCALISSWDDRSWYFLMGIYLVVLDPSNLILTAIFGFLGSGIVLLVGSVIGSWTDRSSRLKAAVIVLIVRNXXXXXXXXXXXXXXFFYDFVILTDKAPTFR----IISQSLLVIFGVLAHVAGLVNNNLLSKDWL 500 D K C F+ ++ + +S+W DR W+F M ++LV L +L L A++G SG +L+G+++G W D++ R++ + L V+N SV LC ++ F+ +P + ++ +++ GV+A +AG + +DW+ Sbjct: 4 DPREKEPRCSSIRKFVKSPRFYIFLSHSMSTWGDRMWHFAMSLFLVELYDKSLFLAAVYGLTASGSHILLGALVGDWVDKNPRMRVVRLSLSVQN-----SSVILCALVLLTIFLCKVQISPVWNGWLMVMCYVVVITIGVVAQLAGTAMTIAIQRDWI 157
BLAST of slc40a-1 vs. Ensembl Nematostella
Match: EDO43654 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RY83]) HSP 1 Score: 53.5286 bits (127), Expect = 6.502e-8 Identity = 26/62 (41.94%), Postives = 37/62 (59.68%), Query Frame = 3 Query: 135 DRSWYFLMGIYLVVLDPSNLILTAIFGFLGSGIVLLVGSVIGSWTDRSSRLKAAVIVLIVRN 320 DR W F + +YLV L P +L LTAIF + +L+G +G+W D + RLK A L+ +N Sbjct: 2 DRMWEFAVALYLVELTPGSLRLTAIFQLTRTLCTILLGPYVGAWVDANPRLKVAQRSLVAQN 63
BLAST of slc40a-1 vs. Ensembl Medaka
Match: slc40a1 (solute carrier family 40 member 1 [Source:NCBI gene;Acc:101158734]) HSP 1 Score: 75.485 bits (184), Expect = 1.690e-14 Identity = 39/97 (40.21%), Postives = 61/97 (62.89%), Query Frame = 3 Query: 42 IDNNA-KSRNCLG---FLTETKYLFYYCALISSWDDRSWYFLMGIYLVVLDPSNLILTAIFGFLGSGIVLLVGSVIGSWTDRSSRLKAAVIVLIVRN 320 +DN+ K C F T K+L Y +S+W DR W F + ++LV L ++L+LTA++G + +G VLL+G++IG W D++ RLK A L+V+N Sbjct: 1 MDNSGHKKTRCESIRDFFTSAKFLIYMGHALSTWGDRMWNFAVSVFLVELYGNSLLLTAVYGLVVAGSVLLLGAIIGDWVDKNPRLKVAQTSLLVQN 97
BLAST of slc40a-1 vs. Ensembl Medaka
Match: ENSORLT00000042491.1 (pep primary_assembly:ASM223467v1:16:15833896:15834366:1 gene:ENSORLG00000021856.1 transcript:ENSORLT00000042491.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 68.5514 bits (166), Expect = 2.934e-14 Identity = 32/80 (40.00%), Postives = 49/80 (61.25%), Query Frame = 3 Query: 78 FLTETKYLFYYCALISSWDDRSWYFLMGIYLVVLDPSNLILTAIFGFLGSGIVLLVGSVIGSWTDRSSRLKAAVIVLIVR 317 +L K+L Y +S W DR W+F + ++L+ L NL+LTA+FG + +G VLL G++IG W DR+ R K + + R Sbjct: 10 YLKGPKFLIYVSGALSMWGDRMWHFAISVFLIELYGHNLLLTAVFGLVVAGSVLLFGALIGDWVDRNPRNKGTQMFITCR 89
BLAST of slc40a-1 vs. Planmine SMEST
Match: SMESG000016854.1 (SMESG000016854.1) HSP 1 Score: 301.982 bits (772), Expect = 1.345e-98 Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 3 Query: 9 MSAYSEIKYSTIDNNAKSRNCLGFLTETKYLFYYCALISSWDDRSWYFLMGIYLVVLDPSNLILTAIFGFLGSGIVLLVGSVIGSWTDRSSRLKAAVIVLIVRNXXXXXXXXXXXXXXFFYDFVILTDKAPTFRIISQSLLVIFGVLAHVAGLVNNNLLSKDWLP 503 MSAYSEIKYSTIDNNAKSRNCLGFLTETKYLFYYCALISSWDDRSWYFLMGIYLVVLDPSNLILTAIFGFLGSGIVLLVGSVIGSWTDRSSRLKAAVIVLIVRNLSTLVCSVSLCVVLFFYDFVILTDKAPTFRIISQSLLVIFGVLAHVAGLVNNNLLSKDWLP Sbjct: 1 MSAYSEIKYSTIDNNAKSRNCLGFLTETKYLFYYCALISSWDDRSWYFLMGIYLVVLDPSNLILTAIFGFLGSGIVLLVGSVIGSWTDRSSRLKAAVIVLIVRNLSTLVCSVSLCVVLFFYDFVILTDKAPTFRIISQSLLVIFGVLAHVAGLVNNNLLSKDWLP 165 The following BLAST results are available for this feature:
BLAST of slc40a-1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 2
BLAST of slc40a-1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of slc40a-1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of slc40a-1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 3
BLAST of slc40a-1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of slc40a-1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 4
BLAST of slc40a-1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 4
BLAST of slc40a-1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of slc40a-1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of slc40a-1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 2
BLAST of slc40a-1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of slc40a-1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of slc40a-1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 2
BLAST of slc40a-1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Cross References
External references for this transcript
Sequences
The following sequences are available for this feature:
transcript sequence >SMED30006791 ID=SMED30006791|Name=slc40a-1|organism=Schmidtea mediterranea sexual|type=transcript|length=1089bpback to top protein sequence of SMED30006791-orf-1 >SMED30006791-orf-1 ID=SMED30006791-orf-1|Name=SMED30006791-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=190bp SSMSAYSEIKYSTIDNNAKSRNCLGFLTETKYLFYYCALISSWDDRSWYFback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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