Transposon Ty3-I Gag-Pol polyprotein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30006762 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 13Note: Hover over icons to view figure legend
Homology
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Human
Match: RTL1 (retrotransposon Gag like 1 [Source:HGNC Symbol;Acc:HGNC:14665]) HSP 1 Score: 93.2041 bits (230), Expect = 3.817e-18 Identity = 78/320 (24.38%), Postives = 151/320 (47.19%), Query Frame = 1 Query: 2248 PWNTPLVCVWKKEKKDIRLCLDFRQL-NKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQE---KTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESICGKNNEKIRWTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQ-KDEKGHEHVIAYGSHAMSSHEKGYCITRKELLAI 3192 P P V + ++ RL ++ L + +T RQ + + + E+ D LHG+ +F+ ++L + ++ E K AF E + + PF ++ P Q ++ +LKD+ V+ Y ++LI++ ++E+H + +VL + + + +K Q R+ V+FLG ++ G++ + + I + P +LR+F+ YR F++ ++ A L ++ + W ++AF +K A AP+L P + F L+T + + A L Q D+ G A+ S +S E Y ++L I Sbjct: 611 PSTAPWEPVGARMQERARLQEEYWDLQDMLTNRQDY-IQMIPELFDQLHGAEWFTKLELRGTIVEESVNGHRTEDVWKAAFGL-ELEEMKSYQPFALSPDPIIPQNVIHFILKDMLGFFVLSYGQEVLIYSMSQEEHLHHVRQVLVRFRHHNVYCSLDKSQFHRQTVEFLGFVVTPKGVKLNKNVMTIITGYPTPGSKLSLRNFIEFVFPYRHFVERFSIIAEPLVRQL-LSSYQFYWGVEEQEAFECLKRAFRKAPLLHHPKPQNPFYLETGVTGTALHASLIQIDDQTGKRACCAFYSRNISPIEVEYSQAEMKILPI 927
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Human
Match: RTL1 (retrotransposon Gag like 1 [Source:HGNC Symbol;Acc:HGNC:14665]) HSP 1 Score: 93.2041 bits (230), Expect = 3.817e-18 Identity = 78/320 (24.38%), Postives = 151/320 (47.19%), Query Frame = 1 Query: 2248 PWNTPLVCVWKKEKKDIRLCLDFRQL-NKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQE---KTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESICGKNNEKIRWTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQ-KDEKGHEHVIAYGSHAMSSHEKGYCITRKELLAI 3192 P P V + ++ RL ++ L + +T RQ + + + E+ D LHG+ +F+ ++L + ++ E K AF E + + PF ++ P Q ++ +LKD+ V+ Y ++LI++ ++E+H + +VL + + + +K Q R+ V+FLG ++ G++ + + I + P +LR+F+ YR F++ ++ A L ++ + W ++AF +K A AP+L P + F L+T + + A L Q D+ G A+ S +S E Y ++L I Sbjct: 611 PSTAPWEPVGARMQERARLQEEYWDLQDMLTNRQDY-IQMIPELFDQLHGAEWFTKLELRGTIVEESVNGHRTEDVWKAAFGL-ELEEMKSYQPFALSPDPIIPQNVIHFILKDMLGFFVLSYGQEVLIYSMSQEEHLHHVRQVLVRFRHHNVYCSLDKSQFHRQTVEFLGFVVTPKGVKLNKNVMTIITGYPTPGSKLSLRNFIEFVFPYRHFVERFSIIAEPLVRQL-LSSYQFYWGVEEQEAFECLKRAFRKAPLLHHPKPQNPFYLETGVTGTALHASLIQIDDQTGKRACCAFYSRNISPIEVEYSQAEMKILPI 927
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Human
Match: CNBP (CCHC-type zinc finger nucleic acid binding protein [Source:HGNC Symbol;Acc:HGNC:13164]) HSP 1 Score: 54.299 bits (129), Expect = 2.084e-7 Identity = 22/48 (45.83%), Postives = 33/48 (68.75%), Query Frame = 2 Query: 803 CWTCQKPGHSSRECNIKRRFQCYACGVEGHIRRECPTIKCHRCNARGH 946 C+ C KPGH +R+C+ +CY+CG GHI+++C +KC+RC GH Sbjct: 100 CYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGH 147
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Human
Match: CNBP (CCHC-type zinc finger nucleic acid binding protein [Source:HGNC Symbol;Acc:HGNC:13164]) HSP 1 Score: 54.299 bits (129), Expect = 2.294e-7 Identity = 22/48 (45.83%), Postives = 33/48 (68.75%), Query Frame = 2 Query: 803 CWTCQKPGHSSRECNIKRRFQCYACGVEGHIRRECPTIKCHRCNARGH 946 C+ C KPGH +R+C+ +CY+CG GHI+++C +KC+RC GH Sbjct: 99 CYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGH 146
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Human
Match: CNBP (CCHC-type zinc finger nucleic acid binding protein [Source:HGNC Symbol;Acc:HGNC:13164]) HSP 1 Score: 53.9138 bits (128), Expect = 2.350e-7 Identity = 22/48 (45.83%), Postives = 33/48 (68.75%), Query Frame = 2 Query: 803 CWTCQKPGHSSRECNIKRRFQCYACGVEGHIRRECPTIKCHRCNARGH 946 C+ C KPGH +R+C+ +CY+CG GHI+++C +KC+RC GH Sbjct: 93 CYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGH 140
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Zebrafish
Match: BX511082.1 (pep chromosome:GRCz11:9:14291932:14297132:1 gene:ENSDARG00000113678.1 transcript:ENSDART00000183119.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX511082.1) HSP 1 Score: 318.546 bits (815), Expect = 3.350e-88 Identity = 194/715 (27.13%), Postives = 348/715 (48.67%), Query Frame = 1 Query: 2185 DKIEEAIKNLENNGIIRKCNSPWNTPLVCVWKKEKKDIRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESICGKNNEKIRWTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEK-GHEHVIAYGSHAMSSHEKGYCITRKELLAIYYFCKHFNHYLYGK--RFVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLSRKTCGTCVQCMMEHEDAKTGK--IKTRILTVTAEGGYNKWQNDNMEVQEIKNKLENKDCKFIMENNTVLTKQGKIWIPSDNRQRMIKEVHV--LLCHAGAQKVTKYIQNNCDMENLATEVKKVIENCERCXXXXXXXXXXX-XXXXXXXXXEPFEKIYMDICGPLKETFNKKKYICGIIDHYSKYISLTAINK-QDERTISETLLNKWILKFGAPKELHVDCGKNFEARSIKELAKTAGIELIFSSPYHHNTNGIIERQFRTIREYINASLNEGGRKNWADIVPEIEYTLNATVQKTTGVSPAEIIFG 4302 + +E+ I + IIR +SP V KK+ +R C+D+R LN IT + +P+P + + L G+ +F+ +DL NAY+ V++ + + KTAF+T G F + +PFG++ AP FQ L+ VL+D+ + VYLDDILIF+ + ++H +VL ++ GL + EKC + V FLGHI++ +G++ D K++A+ + P K L+ FLG N+YRRFI+++++ A L ++ RW+ + AF +K ++AP+L+ PD ++F+++ DAS +GA+LSQ+ G H AY SH +++ E+ Y I +ELLA+ + + H+L G F++ TDHK + ++ + K+ + ++ W + D + YR G+ + D LSR + +H + + I R L ++A W+ ++ ++ C ++++P + R +I+ H L CH G + I+ +A +++ + C C KT + P+ I +D L + N I ++D +SK + K R + +++ G P ++ D G F ++ +E G + SS +H +NG ER + + + +++ +W+ + +EY N+ TG+SP E G Sbjct: 538 EAMEKYISDSLAAKIIRPSSSPAGAGFFFV-KKKDGSLRPCIDYRGLNAITVKNTYPLPLMSSAFERLQGASFFTKLDLRNAYHLVRIREGDEWKTAFNTPRGHFEYCVLPFGLSNAPAVFQALVNDVLRDMLDQFIYVYLDDILIFSHSLQEHVQHVRRVLQRLLENGLYVKAEKCVFHAQSVPFLGHIVSVEGMRMDPEKVQAVVDWPTPDSRKALQRFLGFANFYRRFIRNFSQLAAPLTALTSLKT-PFRWSNAAQVAFDRLKSCFVSAPILIAPDPSRQFVVEVDASEVGVGAILSQRSSSDGKMHPCAYFSHRLNNAEQNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTDHKNLEYIQSAKR-LNSRQARWALFFGRFDFSISYRPGSKNVKPDALSR---------IFDHSERASSPETIVPRRLFISAV----TWEIESRVRMALEGVTPPPGC-----------PPSRLFVPEELRSDVIRWGHSSKLACHPGVSRTLYLIKQRFWWPVMARDIRNFVLACSVCAVSKTSNRPPAGLLQPLSVPSRPWSHIALDFVTGLPPS-NGNTVILTVVDRFSKATHFIPLPKLPSARETAAAVIDHVFRIHGLPTDVVSDRGPQFISKFWREFCHLMGATVSLSSGFHPQSNGQTERANQDLERMLRCLVSQNP-SSWSQQLSWVEYAHNSLPVSATGLSPFECSLG 1223
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Zebrafish
Match: BX546500.1 (pep chromosome:GRCz11:23:12926092:12931693:-1 gene:ENSDARG00000086495.3 transcript:ENSDART00000122176.3 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX546500.1) HSP 1 Score: 316.62 bits (810), Expect = 7.142e-88 Identity = 226/908 (24.89%), Postives = 427/908 (47.03%), Query Frame = 1 Query: 1651 CLLDTGARINVMAKSVIDRLE-NIEILETRESLRCANNSRLETMGKLNINVKM---GSMERNVTFIIVKNLIPEIIGGVELQRL------FGIELKYILEEHEKRSDFICEIEARFGRIITDEERLRHAIDVLKVTGNKR-LLEIFQANKNVFMADKWDIGCT-NLIKHKIITKGEPIMIK-PRRQPINLEDKIEEAIKNLENNGIIRKCNSPWNTPLVCVWKKEKKDIRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESICGKNNEKIRWTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEK-GHEHVIAYGSHAMSSHEKGYCITRKELLAIYYFCKHFNHYLYGK--RFVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLSRKTCGTCVQCMMEHEDAKTGKIKTRILTVTAEGGYNKWQNDNMEVQEIKNKLENKDCKFIMENNT--VLTKQGKIWIPSDNRQRMIKEVHV--LLCHAGAQKVTKYIQNNCDMENLATEVKKVIENCERCXXXXXXXXXXX-XXXXXXXXXEPFEKIYMDICGPLKETFNKKKYICGIIDHYSK---YISLTAINKQDERTISETLLNKWILKFGAPKELHVDCGKNFEARSIKELAKTAGIELIFSSPYHHNTNGIIERQFRTIREYINASLNEGGRKNWADIVPEIEYTLNATVQKTTGVSPAEIIFG 4302 L+D+GA N + +++ L+ L + +++ + L T+ + +++ G+ N++F + K++ +I G L +G + E +S + + +E+ +D+ V L +F ++ + C +L+ KG+ + P R + +E+ I + IIR +SP V KK+ +R C+D+R LN IT + +P+P + + L G+ +F+ +DL NAY+ V++ + KTAF+T G F + +PFG++ AP FQ L+ VL+D+ + VYLDDILIF+ + ++H +VL ++ GL + EKC + V+FLGHI++ +G++ D KI+A+ + P K L+ FLG N+YRRFI+++++ A L S+ + RW+ E AF ++K ++AP+L+ PD ++F+++ DAS +GA+LSQ+ G H AY SH +S E+ Y I +ELLA+ + + H+L G F++ TDHK + ++ + K+ + ++ W + + + YR G+ + D LSR + + D + V +G + V I ++E++ + + T + ++++P + R +++ H + CH G + I+ +A +V+ + C C K+ + P+ I +D L + N + ++D +SK +ISL + E ++ +++ G P ++ D G F +R +E + G + SS +H +NG ER + + + +++ +W+ + +EY N+ +TG+SP + G Sbjct: 332 ALIDSGAEGNFIDSDLVNELKIPFSPLSSPIAVQALSGLSLPTITHITAPIRLVTSGNHTENISFFLTKSVNNPVILGHPWLVLHKPHINWGHSAVFSWSESCHKSCLLSACSTVPCSVFQEEQ-----VDLSNVPREYHDLKRVFSKSRAASLPPHRPYDCAIDLLPGTSPPKGKLYSLSVPER------EAMEKYISDSLAAKIIRPSSSPAGAGFFFV-KKKDGSLRPCIDYRGLNSITVKNTYPLPLMSSAFERLQGANFFTKLDLRNAYHLVRIRPGDEWKTAFNTPRGHFEYCVLPFGLSNAPAVFQALVNDVLRDMIDQFIYVYLDDILIFSHSLQEHVQHVRRVLQRLLENGLYVKAEKCVFHAQSVQFLGHIVSVEGMRMDPEKIQAVVDWPTPDSRKALQRFLGFANFYRRFIRNFSQLAAPLTSLT-SSKMPFRWSSAAEAAFSKLKGCFVSAPILIAPDPSRQFVVEVDASEVGVGAILSQRSSSDGKIHPCAYFSHRLSPAERNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTDHKNLEYIRSAKR-LNSRQARWALFFGRFNFTISYRPGSKNIKPDALSR---------LFDPSDRLSSPDP-----VLPQG---------IVVANISWEIESR-VRTALNGVTPPIGCPPSRLFVPEELRSDVVRWGHSSKVACHPGVSRTLFVIKQRFWWPTMARDVRDFVLACSVCAVSKSSNRPPAGLLQPLSVPSRPWSHISLDFVTGLPSS-NGNTVVLTVVDRFSKAAHFISLPKLPSARETAVA--VIDHVFRIHGLPTDVVSDRGPQFVSRFWREFCRLLGATVSLSSGFHPQSNGQTERANQDLERTLRCLVSQNP-SSWSQQLSWVEYAHNSLPVSSTGLSPFQCSLG 1197
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Zebrafish
Match: FO704673.1 (pep chromosome:GRCz11:12:14545475:14551077:-1 gene:ENSDARG00000112601.1 transcript:ENSDART00000188717.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:FO704673.1) HSP 1 Score: 313.153 bits (801), Expect = 1.558e-86 Identity = 255/1014 (25.15%), Postives = 465/1014 (45.86%), Query Frame = 1 Query: 1645 VDCLLDTGARINVMAKSVIDRLENIEILETRESLRCANNSRLE--TMGK------LNINVKMGSM-ERNVTFIIVKNLIPEIIGGVELQRLFGIELKYILEEHEKRSDFICEIEARFGRIITDEERLRHAIDVLKVTGNKRLLEIFQANKNVFMADK---------WDIGCTNLIKHKIITKGEPIMIKPRRQPINLEDKIEEAIKNLENNGIIRKCNSPWNTPLVCVWKKEKKD--IRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESICGKNNEKIRWTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQK-DEKGHEHVIAYGSHAMSSHEKGYCITRKELLAIYYFCKHFNHYLYGK--RFVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLSRKTCGTCVQCMMEHEDAKTGKIKTRILTVTAEGGYNKWQNDNMEVQEIKNKLENKDCKFIMENNTVLTKQGKIWIPSDNRQRMIKEVHVLLC--HAGAQKVTKYIQNNCDMENLATEVKKVIENCERCXXXXXXXXXXX-XXXXXXXXXEPFEKIYMDICGPLKETFNKKKYICGIIDHYSKYISLTAINKQDERTISETLLNKWILK-FGAPKELHVDCGKNFEARSIKELAKTAGIELIFSSPYHHNTNGIIERQFRTIREYINASLNEGGRKNWADIVPEIEYTLNATVQKTTGVSPAEIIFGRKIDRMKWYSNKEI--NREDMEKRIED--KTLKPKISKTVR--------------NFEM-EDVVLIKQEIR-----NKDDARWEGPYKVIKKIHERSYLLK 4533 V L+D+G+ +N++++ + D+L+ + T + N +R++ T+G +++ +G E +TF ++ + E+I G I I + + + + R I L +I+ +V L + ++ VF K WD C + + I R + +E IEEA+ ++G IR SP + EKKD +R C+D+R LN IT + +P+P V L+ L +R ++ +DL +AY +++ + + KTAF T G + + MP+G+A +P FQ + +V +DL V+ Y+DDILI++ E H VL ++ L EKC+ + FLG+II+ G++ +NTK++A+ + PK VK L+ FLG N+YRRFI++Y+ + L S+ K++W K+F ++K + TAP+L P+ F+++ DAS IGAVLSQ+ G H AY S +++ E+ Y + KELL++ + + H+L G F + TDHK + ++ + ++ + + W + + + + YR GT + AD LSR+ ++ + + IL + W D ME EI+ ++ N + ++P R R+++ VH L H G + ++N + ++ +++C C + KT P+ + +D L + N I IID +SK L + + L + + + +G P+++ D G F ++ K K I + +S YH +NG +ER + I Y+ + K W++ +P EY N+ +TG++P + I G + W + + +D +R E+ + ++ + +R N++ + V L +++R K R+ GP+K++K+I+ +Y L+ Sbjct: 332 VSALVDSGSAVNIISQELTDKLK----IPTSPCVPVINITRIDNGTIGSGIKAITQPVSLSIGLFHEETITFYVIPSCKYEVILG---HPWLTIHDPTISWNQGELTHWSTHCQQRCFSKILSLPCLSTSIESPEVHSQVTLPQPYREFAEVFNKSKAAQLPPHRSWD--CAIELLPNMSPPKSKIYPLSRPETQAMETYIEEAL----SSGYIRPSTSPAAAGFFFI---EKKDGGLRPCIDYRGLNNITVKYRYPLPLVPPALEQLREARIYTKLDLRSAYNLIRIREGDEWKTAFLTTRGHYEYLVMPYGLANSPAVFQSFINEVFRDLLNKCVIAYIDDILIYSPNLEQHIKDVRTVLTRLQENQLYAKLEKCEFHMSKTSFLGYIISHHGVEMNNTKVQAVTGWPLPKTVKELQRFLGFANFYRRFIRNYSLISAPLTSLLKGKPSKLKWNPETVKSFEKLKTSFTTAPILKHPNPELPFVVEVDASDYGIGAVLSQRHGNPGKLHPCAYFSRKLTAAERNYDVGNKELLSMKAALEEWRHWLEGAVHPFQIITDHKNLEYIKSARR-LNPRQARWSLFFTRFNFTVTYRPGTKNHKADALSRR-----------YDQGQLDQTPVSILPPSVVIAQISW--DIME--EIQRGQQDDPPPPECPPN-------RQYVPQTLRLRIMQWVHNSLSSGHPGISRTLNLVRNAFWWPKMNQDITTFVKSCAVCAQSKTPRELPSGLLQPLPIPHRPWSHLSIDFVTDLPNS-NNYTTILVIIDRFSKACRLIPLKGLPTAMETALELFQHVFRVYGIPEDIVSDRGPQFTSKVWKAFCKQLDINVSLTSGYHPESNGQVERLNQEIGRYLRTYCSREQDK-WSNFLPWAEYAQNSLTHSSTGLTPFQCILGYQPPMFPWSGEPSMVPSVDDWVQRSEEVWNSAHVRLQRAIRTQRINADQRRRPNPNYQPGQRVWLSTRDLRLRLPSRKLSPRYVGPFKILKRINNVTYRLE 1304
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Zebrafish
Match: CR855320.1 (pep chromosome:GRCz11:1:7956030:7961696:1 gene:ENSDARG00000099359.2 transcript:ENSDART00000159655.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CR855320.1) HSP 1 Score: 310.842 bits (795), Expect = 9.844e-86 Identity = 193/701 (27.53%), Postives = 344/701 (49.07%), Query Frame = 1 Query: 2227 IIRKCNSPWNTPLVCVWKKEKKDIRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESICGKNNEKIRWTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEK-GHEHVIAYGSHAMSSHEKGYCITRKELLAIYYFCKHFNHYLYGK--RFVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLSRKTCGTCVQCMMEHEDAKTGKIKTRILTVTAEGGYNKWQNDNMEVQEIKNKLENKDCKFIMENNT--VLTKQGKIWIPSDNRQRMIKEVHV--LLCHAGAQKVTKYIQNNCDMENLATEVKKVIENCERCXXXXXXXXXXX-XXXXXXXXXEPFEKIYMDICGPLKETFNKKKYICGIIDHYSKYISLTAINK-QDERTISETLLNKWILKFGAPKELHVDCGKNFEARSIKELAKTAGIELIFSSPYHHNTNGIIERQFRTIREYINASLNEGGRKNWADIVPEIEYTLNATVQKTTGVSPAEIIFG 4302 IIR +SP V KK+ +R C+D+R LN IT + +P+P + + L G+ +F+ +DL NAY+ V++ + K+AF+T G F + +PFG++ AP FQ + VL+D+ + VYLDDILIF+ + ++H +VL ++ GL + EKC + V FLGHI++ +G++ D KI+A+ ++ P K L+ FLG N+YRRFI+++++ A L ++ + RW+ E AF ++K ++AP+L+ PD ++F+++ DAS +GA+LSQ+ G H AY SH +S+ E Y I +ELLA+ + + H+L G F++ TDHK + ++ + K+ + ++ W + + + YR G+ + D LSR + E + + RI+ + I ++E+K + ++ T + ++++P R +I+ H + CH G + + I+ LA +V+ + C C KT + P+ I +D L + N I ++D +SK + K R + ++N G P ++ D G F ++ +E + G + SS +H +NG ER + + + +++ +W+ + +EY N+ TG+SP + G Sbjct: 554 IIRPSSSPAGAGFFFV-KKKDGSLRPCIDYRGLNNITVKNTYPLPLMSSAFERLQGANFFTKLDLRNAYHLVRIRAGDEWKSAFNTPRGHFEYCVLPFGLSNAPAVFQAFVNDVLRDMIDQFIYVYLDDILIFSHSLQEHVQHIRRVLQRLLENGLYVKAEKCVFHAQSVPFLGHIVSVEGLRMDPEKIKAVVNWPTPDSRKALQRFLGFANFYRRFIRNFSQLAAPLTALTS-SKTPFRWSSAAEAAFSKLKGCFVSAPILITPDPSRQFVVEVDASEVGVGAILSQRSSSDGKIHPCAYYSHRLSAAESNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTDHKNLEYIKSAKR-LNSRQARWALFFGRFNFTISYRPGSKNIKPDALSRLFDSS------ERTSSLEPVVPKRIV-----------------ISNITWEIESK-VRAALDGVTPPIGCPPSRLFVPEKLRSDVIRWGHSSKVACHPGVSRTSFVIKQRFWWPALARDVRDFVLACSVCAVSKTSNRPPAGLLQPLSVPSRPWSHISLDFVTGLPPS-NGNTVILTVVDRFSKAAHFVPLPKLPSARETAVAVINHVFRIHGLPTDVVSDRGPQFISKFWREFCRLLGATVSLSSGFHPQSNGQTERANQDLERTLRCLVSQNP-SSWSQQLSWVEYAHNSLPVSATGLSPFQCSLG 1225
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Zebrafish
Match: BX511224.1 (pep chromosome:GRCz11:2:18017000:18022765:1 gene:ENSDARG00000113243.1 transcript:ENSDART00000186877.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX511224.1) HSP 1 Score: 309.686 bits (792), Expect = 1.931e-85 Identity = 195/719 (27.12%), Postives = 353/719 (49.10%), Query Frame = 1 Query: 2185 DKIEEAIKNLENNGIIRKCNSPWNTPLVCVWKKEKKDIRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESICGKNNEKIRWTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEK-GHEHVIAYGSHAMSSHEKGYCITRKELLAIYYFCKHFNHYLYGK--RFVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLSRKTCGTCVQCMMEHEDAKTGK---IKTRILTVTAEGGYNKWQNDNMEVQE-IKNKLENKDCKFIMENNTVLTKQGKIWIPSDNRQRMIKEVHV--LLCHAGAQKVTKYIQNNCDMENLATEVKKVIENCERCXXXXXXXXXXX-XXXXXXXXXEPFEKIYMDICGPLKETFNKKKYICGIIDHYSK---YISLTAINKQDERTISETLLNKWILKFGAPKELHVDCGKNFEARSIKELAKTAGIELIFSSPYHHNTNGIIERQFRTIREYINASLNEGGRKNWADIVPEIEYTLNATVQKTTGVSPAEIIFG 4302 + +E+ I + IIR +SP V KK+ +R C+D+R LN IT + +P+P + + L G+ +F+ +DL NAY+ V + + KTAF+T G F + +PFG++ AP FQ L+ VL+D+ + VYLDDILIF+ + ++H +VL ++ GL + EKC + V+FLGHI++ +G++ D KI+A+ ++ P K L+ FLG N+YRRFI ++++ A L S+ + RW+ E AF ++K ++AP+L+ PD ++F+++ DAS +GA+LSQ+ G H AY SH +SS E+ Y I +ELLA+ + + H+L G F++ TDHK + ++ + K+ + ++ W + + + YR G+ + D LSR + + D + + RI+ N + E++ ++ L+ N ++++P + R +++ H + CH G + ++ +A +V+ + C C K+ + P+ I +D L + N I ++D +SK +ISL + E ++ +++ G P ++ D G F ++ +E + G + SS +H +NG ER + + + +++ +W+ + +EY N+ TG+S + G Sbjct: 538 EAMEKYISDSLAAKIIRPSSSPAGAGFFFV-KKKDGSLRPCIDYRGLNSITVKNTYPLPLMSSAFERLQGANFFTKLDLRNAYHLVCIRPGDEWKTAFNTPRGHFEYCVLPFGLSNAPAVFQALVNDVLRDMIDQFIYVYLDDILIFSHSLQEHIQHVRRVLQRLLENGLYVKAEKCVFHAQSVQFLGHIVSVEGMRMDPEKIQAVVNWPTPDSRKALQRFLGFANFYRRFIHNFSQLAAPLTSLT-SSKTPFRWSSAAEAAFSKLKGCFVSAPILIAPDPSRQFVVEVDASEVGVGAILSQRSASDGKVHPCAYFSHRLSSAERNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTDHKNLEYIKSAKR-LNSRQARWALFFGRFNFTISYRPGSKNIKPDALSR---------LFDPSDRTSSPDPVLPQRIVVA----------NISWEIESRVRTALDGVTPPIGCPPN-------RLFVPEELRSDVVRWGHSSKVACHPGVSRTLFVVKQRFWWPAMARDVRDFVLACSVCAVSKSSNRPPAGLLQPLSVPSRPWSHISLDFVTGLPSS-NGNTVILTVVDRFSKAAHFISLPKLPSARETAVA--VIDHVFRIHGLPTDVVSDRGPQFVSKFWREFCRLLGATVSLSSGFHPQSNGQTERANQDLERTLRCLVSQNP-SSWSQQLSWVEYAHNSLPVSATGLSSFQCSLG 1223
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Xenopus
Match: ENSXETT00000006041.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:6:37317867:37322724:1 gene:ENSXETG00000003070.1 transcript:ENSXETT00000006041.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 370.933 bits (951), Expect = 3.403e-106 Identity = 237/846 (28.01%), Postives = 417/846 (49.29%), Query Frame = 1 Query: 2038 RLLEIFQANKNVFMADKWDIGCTNLIKHKI-ITKGEPIMIKPRR-QPINLEDKIEEAIKNLENNGIIRKCNSPWNTPLVCVWKKEKKDIRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESICGKNNE-----------KIR------------WTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEKGHEHVIAYGSHAMSSHEKGYCITRKELLAI-YYFCKHFNHYLYGKRFVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLS---------------------RKTC-GTCVQCMMEHEDAKTG--------------KIKTRILTVTAEGGYNKWQNDNMEVQEIKNKLENKDCKFIMENNTVL---------------------------TKQGKIWIPSDNRQRMIKEVHVLLCHAGAQKVTKYIQNNCDMENLATEVKKVIENCERCXXXXXXXXXXXXXXXXXXXXEPFEKIYMDICGPLKETFNKKKYICGIIDHYSKYISLTAINKQDERTISETLLNKWILKFGAPKELHVDCGKNFEARSIKELAKTAGIELIFSSPYHHNTNGIIERQFRTIREYINASLNEGGRKNWADIVPEIEYTLNATVQKTTGVSPAEIIFGRK 4308 RL + + +F + D+GC+ KHKI + + +P + RR P +LED + + ++ L+ GII++ SP+ +P+V V +K+ IR+C+D+R LN+ T + P +++ L+ L GS++FS +DL + YYQ+ + E +EKTAF G F FNRMP G+ AP TFQ LM + + D+ V+VYLDD+++F +T E+H KV ++ GL+L+PEKCQ + V ++GH+++ +GI TD +KIEA+ S+ KP+ + LRSFLG C YYRRF+K ++K A+ L + N E ++R WTE C+KAF ++K L APVL + D K + L DAS + +G +L Q+ K +A+ S ++S E+ Y + E LA+ + + YLYG F ++TD+ +T+++TT K + A W+ L+ + YR G + +AD LS R C G +C + K G + T + +G + Q+++ Q L K + + ++ L +++ ++ +P +R ++ +H H G K +++ + +V+ +C RC + KT+ ++ + P + + +D ++ + + DHY++Y Q T+++ L+ ++ + +G PK +H D G++FE++ + EL G+ ++PYH + ER RT+ + + +L + + +W+ + + + N+T TG SP ++FGR+ Sbjct: 290 RLRKHLNEHSALFSRNDLDMGCSTSTKHKIRLREDKPFRERSRRIAPGDLED-LRKHLEELKAAGIIKESRSPYASPIVVV-RKKNGSIRMCVDYRTLNQRTIPDQYTTPRIEDALNCLVGSKWFSVLDLRSGYYQLPMHPEDKEKTAFICPLGFFEFNRMPQGLCGAPATFQRLMERTVGDMHLLEVLVYLDDLIVFGRTLEEHEQRLLKVFDRLEKEGLKLSPEKCQFCQPSVNYVGHVVSAEGIATDPSKIEAVSSWPKPRTITELRSFLGFCGYYRRFVKGFSKVAQPLNQLLQSNTEVEGSDRDILAKRLRGQGWTRESIEDFWTEECDKAFDQLKYCLTHAPVLAYADATKPYTLHIDASREGLGGILYQEYNK-ELRPVAFISRSLSPSERNYPAHKLEFLALKWAVVDKLHEYLYGAEFEVQTDNNPLTYILTTAK-LDATGHRWLAALAHYKFSLRYRPGRDNRDADGLSRRPHGDLHPDDEWIEIPAPGVRTMCQGITGRCQSGNFAEKIGMTVRGIPKLYCNVTSVGTSTMPALNKGDIKRDQSEDPLCQMAMEALRKKQVQILKTDSHPLASLLVKEWDRLRLRDGLVYRRAPSATDSEKWQLMLPQKHRDSVLMALHDEHGHLGYDKTLGLVRDRFYWPCMKQDVEDYCRSCLRCIQRKTLPSRAAPLSHMESH-SPLDLVCIDFLS-IEPDEGGTSNVLVVTDHYTRYAQAFPTKDQRAITVAKVLVERFFIHYGLPKRIHSDQGRDFESKLVHELMSMLGVLKSRTTPYHPQGDPQPERFNRTLLDML-GTLPKEKKTHWSRHIATVVHAYNSTKNGATGYSPYFLMFGRE 1128
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Xenopus
Match: anxa6 (annexin A6 [Source:Xenbase;Acc:XB-GENE-989741]) HSP 1 Score: 327.791 bits (839), Expect = 1.738e-95 Identity = 172/466 (36.91%), Postives = 263/466 (56.44%), Query Frame = 1 Query: 2011 DVLKVTGNKRLLEIFQANKNVFMADKWDIGCTNLIKHKIITKGE-PIMIKPRRQPINLEDKIEEAIKNLENNGIIRKCNSPWNTPLVCVWKKEKKDIRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESICGKNNEK-IRWTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEKGHEHVIAYGSHAMSSHEKGYCITRKELLAIYYFCKHFNHYLYGKRFVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLSRK 3402 D L ++ +L +I ++ +F A+ G T+ +HK+ T + PI R + +++ I + G+I +SPW +P+V V KK+ R C+D+R+LN +T A+PMP VDE+LD L ++Y +++DL Y+Q+ L +QEK+AF T G + F MPFG+ AP TFQ L+ ++L+ + +D YLDDI +F++T E+H +V +I AGL L PEKC + EV++LGH + ++ D K+EAI + PK K + +FLG YYR+FI +Y+ A+ L + + + I WT CE A +K+AL ++PVL PDF + FIL TDAS +GAVLSQ + G EH +AY S + E Y KE LAI + + YLYG+ F + TDH ++++ + W L + +++RKG H NAD LSR+ Sbjct: 295 DHLHLSQQDQLRKILRSYSPMFSANP---GRTHWAEHKVDTGTQLPIRSPAYRVAEAVRPEMKSQIDEMLAFGVITPSHSPWASPVVLVPKKDGS-TRFCVDYRRLNDVTTTDAYPMPRVDELLDRLGNAKYLTTLDLSRGYWQIPLAPSAQEKSAFLTPFGLYQFTVMPFGMRNAPATFQRLVNRLLEGM-QDFAQAYLDDIAVFSQTWEEHLQHLQRVFAQIQDAGLTLKPEKCHLAMAEVQYLGHRVGGGQLRPDPAKVEAICQWPIPKTQKQVLAFLGTSGYYRKFIPNYSTVAKPLTDLTSRQRSRTIVWTPECESAMNALKQALASSPVLAAPDFSRRFILQTDASNFGLGAVLSQVNTYGEEHPVAYLSRKLLPREAAYATIEKECLAIVWALQKLQPYLYGREFTVVTDHNPLSWLQRVSG-DNGKLLRWSLLLQQYNFTIQHRKGKEHHNADGLSRQ 754 HSP 2 Score: 91.2781 bits (225), Expect = 8.376e-18 Identity = 65/253 (25.69%), Postives = 116/253 (45.85%), Query Frame = 1 Query: 3916 IDHYSKYISLTAINKQDERTISETLLNKWILKFGAPKELHVDCGKNFEARSIKELAKTAGIELIFSSPYHHNTNGIIERQFRTIREYINASLNEGGRKNWADIVPEIEYTLNATVQKTTGVSPAEIIFGRKI----DRMKWYSNKEINREDME---------KRIE----------------DKTLKPKISKTVRNFEMEDVVLIKQEIRNKDDARWEGPYKVIKKIHERSYLLKDQNGKMVVRNVEKIKHFK 4587 +D+ ++Y A+ K D T+++ L+ + + G P E+ D G F ++ ++ L + G+ I SSPYH TNG+ ER T++ + + E G K+W +P + + Q++TG SP E+++GR++ D + Y +++ +R+E K + ++ R E + V+L+ +K A WEGPY V K+H+ +Y VV E H+K Sbjct: 1 MDYATRYPEAVALRKIDAPTVADALIQIFS-RVGFPSEILSDQGPQFTSQLLQCLWQRCGVRAIHSSPYHPQTNGLCERFNGTLKTMLR-TFVESGEKDWERYLPHLLFAYREVPQESTGFSPFELLYGRRVRGPLDLLCEYWEGAPQSQEVPIIPYVLKFRQRLEQMTSLAHDHLSAAQQRQKVWYDRKARERRFMEGDKVLLLVPTRHDKLQAAWEGPYVVTHKLHDTTY---------VVTPPEDPSHYK 242
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Xenopus
Match: ENSXETT00000035398.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:3:9869556:9871940:-1 gene:ENSXETG00000011182.1 transcript:ENSXETT00000035398.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 300.827 bits (769), Expect = 1.447e-86 Identity = 207/718 (28.83%), Postives = 335/718 (46.66%), Query Frame = 1 Query: 2191 IEEAIKNLENNGIIRKCNSPWNTPLVCVWKKEKKD--IRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESICGKNNEKIRWTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEK-GHEHVIAYGSHAMSSHEKGYCITRKELLAIYYFCKHFNHYLYGKR--FVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLSRKTCGTCVQCMMEHEDAKTGKIKTRILTVTAEGGYNKWQNDNMEVQEIKNKLENKDCKFIMENNTVL--TKQGKIWIPSDNRQRMIKEVHVL--LCHAGAQKVTKYIQNNCDMENLATEVKKVIENCERCXXXXXXXXXX-XXXXXXXXXXEPFEKIYMDICGPLKETFNKKKYICGIIDHYSKYISLTAINKQDERTISETLLNKWILKF-GAPKELHVDCGKNFEARSIKELAKTAGIELIFSSPYHHNTNGIIERQFRTIREYI--NASLNEGGRKNWADIVPEIEYTLNATVQKTTGVSPAEIIFGR 4305 ++E I G IR SP V EKKD +R C+D+R LNKIT + +P+P + E+ D L G++ FS +DL AY +++ + + KTAF+T++G + + MPFG+ AP FQE + + +DL V+VYLDDILIF++ E H + + L ++ L EKC ++ FLG+II+ G + D K+ AIQ + P+ K ++ F+G NYYR+FIK ++ + + S+ K W + +AF +K+A I+A VL P+ F ++ DAS GA+LSQ+ G H AY S SS E+ Y I +ELLA+ + + H L G + TDHK + F+ + K+ Q W + S + YR GT + AD LSR + +I +L AE + ++ + T G ++P + R ++++ H H G++K + +Q + +V+ + C C K ++ + P+ + MD L + I +ID +SK + K L + I + G P E+ D G F +R + L K+ G+ L FSS YH TNG ER + + +++ + SL + +W+D++P E+ N +TG SP ++G+ Sbjct: 18 MKEYISENLQRGFIRPSTSPAGAGFFFV---EKKDGGLRPCIDYRGLNKITVKNRYPLPLISELFDQLKGAKIFSKLDLRGAYNLIRIREGDEWKTAFNTRDGHYEYLVMPFGLCNAPAVFQEFVNDIFRDLLGKSVVVYLDDILIFSQDLETHRSQVKEALSRLRENSLFAKLEKCTFEVPKISFLGYIISSRGFEMDPAKVSAIQKWPLPQSTKAIQRFIGFANYYRQFIKGFSSRIAPILSLIRKGGRPNCWPPVALEAFQSLKDAFISASVLRHPEPHLPFFIEVDASDVGAGAILSQRHSADGKLHPCAYFSKKFSSAEQNYDIGNRELLAVKLALEEWRHLLEGASHPVTIYTDHKNLEFLQSLKRQNPRQ-ARWSLFFSRFHFVLTYRPGTKNRKADALSRSFSPEDRLPIEREPIIPPSRIIASVLPQFAE-------------------------QILLSQSAAPPDTPIGMAFVPPELRLPILQQTHSSKQAGHPGSEKTLELLQRLVWWPTIRKDVRDFVAACTVCATTKASHSRPCGLLHPLPVPSRPWTHLGMDFIVELPPSCG-NTVIWVVIDRFSKMAHFVPLRKLPSAVELAQLFIQHIFRLHGFPVEIVSDRGSQFVSRFWRSLCKSLGVSLQFSSAYHPQTNGAAERVNQALEQFLRNHVSLCQ---DDWSDLLPWAEFAHNNARHSSTGRSPFLSVYGQ 702
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Xenopus
Match: ENSXETT00000034712.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:9:33567219:33572531:-1 gene:ENSXETG00000011772.1 transcript:ENSXETT00000034712.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 311.227 bits (796), Expect = 1.345e-85 Identity = 241/919 (26.22%), Postives = 412/919 (44.83%), Query Frame = 1 Query: 1624 LDIQGRKVDCLLDTGARINVMAKSVIDRLENIEILETRESLRC--------ANNSRLETMGKLNINVKMGSMERNVTFIIVKNLIPEIIGGVELQRLFGIELKYILEEHEKRSDFI---CEIEARFGRIITDEERLRHAIDVLKVTGNKRLLEIFQANKNVFMADKWDIGCT-NLIKHKIITKGEPIMIKPRRQPINLEDKIEEAIKNLENNGIIRKCNSPWNTPLVCVWKKEKKD--IRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESICGKNNEKIRWTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEK-GHEHVIAYGSHAMSSHEKGYCITRKELLAIYYFCKHFNHYLYGKR--FVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLSRKTCGTCVQCMMEHEDAKTGKIKTRILTVTAEGGYNKWQNDNMEVQEIKNKLENKDCKFIMENNTVL--TKQGKIWIPSDNRQRMIKEVHVL--LCHAGAQKVTKYIQNNCDMENLATEVKKVIENCERCXXXXXXXXXX-XXXXXXXXXXEPFEKIYMDICGPLKETFNKKKYICGIIDHYSKYISLTAINKQDERTISETLLNKWILKF-GAPKELHVDCGKNFEARSIKELAKTAGIELIFSSPYHHNTNGIIERQFRTIREYI--NASLNEGGRKNWADIVPEIEYTLNATVQKTTGVSPAEIIFGR 4305 L Q V LD+GA N M + ++ I + S+R + ++ T G+L++ + +E+ ++F+I+ ++ G+ RL + + + + S + C I R+ V + ++F F+ C +L+ + +G + P +++ I E NL+ G IR SP V EKKD +R C+D+R LNKIT + +P+P + E+ D L G++ FS +DL AY +++ + + KTAF+T++G + + MPFG+ AP FQE + + +DL V+VYLDDILIF++ E H + + L ++ L EKC ++ FLG+II+ G + D K+ AIQ + P+ K ++ F+G NYYR+FIKD++ + + S+ K W + +AF +K+A I+A VL P+ F ++ DAS GA+LSQ+ G H AY S SS E+ Y I +ELLA+ + + H L G + TDHK + F+ + K+ Q + W + S + + YR GT + AD LSR + + +I +L AE + ++ + T G ++P + R ++++ H H G++K + ++ + +V+ + C C K ++ + P+ + MD L + I +ID +SK + K L + I + G P E+ D G F +R + L K+ G+ L FSS YH TNG ER + + +++ + SL + +W+D++P E+ N +TG SP ++G+ Sbjct: 347 LSSQAIPVSAFLDSGAAGNFMDLAFAKKV-GISLFPVTPSIRVFAIDDRPLSTDTITLTTGELSVQIGALHLEK-MSFLIIPCPSSPVVLGLPWLRLHNPSIDWSSGQISRWSQYCQRHCLIPQPLQRVTVSSTSFSALPSVYR-----DFSDVFCKKSAEFLPPHRRYDCPIDLLPGTMPPRGRTYPLSPAET-AAMKEYISE---NLQR-GFIRPSTSPAGAGFFFV---EKKDGGLRPCIDYRGLNKITVKNRYPLPLISELFDQLKGAKIFSKLDLRGAYNLIRIREGDEWKTAFNTRDGHYEYLVMPFGLCNAPAVFQEFVNDIFRDLLGKSVVVYLDDILIFSQDLETHRSQVKEALSRLRENFLFAKLEKCTFEVPKISFLGYIISSRGFEMDPAKVSAIQKWPLPQSTKAIQRFIGFANYYRQFIKDFSSRIAPILSLIRKGGRPNCWPPVALEAFQSLKDAFISASVLRHPEPHLPFFIEVDASDVGAGAILSQRHSADGKLHPCAYFSKKFSSAEQNYDIGNRELLAVKLALEEWRHLLEGASHPVTIYTDHKNLEFLQSLKRQNPRQAR-WSLFFSRFNFVLTYRPGTKNRKADALSRSFSPEDRLPIEQEPIIPPFRIIASVLPQFAE-------------------------QILLSQSAAPSDTPIGMAFVPPELRLPILQQTHSSKQAGHPGSEKTLELLRRLVWWPTIRKDVRDFVAACTVCATTKASHSRPCGLLHPLPIPSRPWTHLGMDFIVELPPSCG-NTVIWVVIDRFSKMAHFIPLRKLPSAVELAHLFIQHIFRLHGFPVEIVSDRGSQFVSRFWRSLCKSLGVSLQFSSAYHPQTNGAAERVNQALEQFLRNHVSLCQ---DDWSDLLPWAEFAHNNASHSSTGRSPFLSVYGQ 1220
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Xenopus
Match: ENSXETT00000042189.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:KV460667.1:82848:87648:1 gene:ENSXETG00000017765.1 transcript:ENSXETT00000042189.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 309.301 bits (791), Expect = 4.854e-85 Identity = 240/919 (26.12%), Postives = 411/919 (44.72%), Query Frame = 1 Query: 1624 LDIQGRKVDCLLDTGARINVMAKSVIDRLENIEILETRESLRC--------ANNSRLETMGKLNINVKMGSMERNVTFIIVKNLIPEIIGGVELQRLFGIELKYILEEHEKRSDFI---CEIEARFGRIITDEERLRHAIDVLKVTGNKRLLEIFQANKNVFMADKWDIGCT-NLIKHKIITKGEPIMIKPRRQPINLEDKIEEAIKNLENNGIIRKCNSPWNTPLVCVWKKEKKD--IRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESICGKNNEKIRWTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEK-GHEHVIAYGSHAMSSHEKGYCITRKELLAIYYFCKHFNHYLYGKR--FVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLSRKTCGTCVQCMMEHEDAKTGKIKTRILTVTAEGGYNKWQNDNMEVQEIKNKLENKDCKFIMENNTVL--TKQGKIWIPSDNRQRMIKEVHVL--LCHAGAQKVTKYIQNNCDMENLATEVKKVIENCERCXXXXXXXXXX-XXXXXXXXXXEPFEKIYMDICGPLKETFNKKKYICGIIDHYSKYISLTAINKQDERTISETLLNKWILKF-GAPKELHVDCGKNFEARSIKELAKTAGIELIFSSPYHHNTNGIIERQFRTIREYI--NASLNEGGRKNWADIVPEIEYTLNATVQKTTGVSPAEIIFGR 4305 L Q V LD+GA N M + ++ I + S+R + ++ T G+L++ + +E+ ++F+I+ ++ G+ RL + + + + S + C I R+ V + ++F F+ C +L+ + +G + P +++ I E NL+ G IR SP V EKKD +R C+D+R LNKIT + +P+P + E+ D L G++ FS +DL AY +++ + + KTAF+T++G + + MPFG+ AP FQE + + +DL V+VYLDDILIF++ E H + + L ++ L EKC ++ FLG+II+ G + D K+ AIQ + P+ K ++ F+G NYYR+FIKD++ + S+ K W + +AF +K+A I+A VL P+ F ++ DAS GA+LSQ+ G H AY S SS E+ Y I +ELLA+ + + H L G + TDHK + F+ + K+ Q + W + + + + YR GT + AD LSR + + +I +L AE + ++ + T G ++P + R ++++ H H G++K + ++ + +V+ + C C K ++ + P+ + MD L + I +ID +SK + K L + I + G P E+ D G F +R + L K+ G+ L FSS YH TNG ER + + +++ + SL + +W+D++P E+ N +TG SP ++G+ Sbjct: 347 LSSQAIPVSAFLDSGAAGNFMDLAFAKKV-GISLFPVTPSIRVFAIDDRPLSTDTITLTTGELSVQIGALHLEK-MSFLIIPCPSSPVVLGLPWLRLHNPSIDWSSGQISRWSQYCQRHCLIPQPLQRVTVSSTSFSALPSVYR-----DFSDVFCKKSAEFLPPHRRYDCPIDLLPGTMPPRGRTYPLSPAET-AAMKEYISE---NLQR-GFIRPSTSPAGAGFFFV---EKKDGGLRPCIDYRGLNKITVKNRYPLPLISELFDQLKGAKIFSKLDLRGAYNLIRIREGDEWKTAFNTRDGHYEYLVMPFGLCNAPAVFQEFVNDIFRDLLGKSVVVYLDDILIFSQDLETHRSQVKEALSRLRENFLFAKLEKCTFEVPKISFLGYIISSRGFEMDPAKVSAIQKWPLPQSTKAIQRFIGFANYYRQFIKDFSSHIAPILSLIRKGGRPNCWPPVALEAFQSLKDAFISASVLRHPEPHLPFFIEVDASDVGAGAILSQRHSADGKLHPCAYFSKKFSSAEQNYDIGNRELLAVKLALEEWRHLLEGASHPVTIYTDHKNLEFLQSLKRQNPRQAR-WSLFFTRFNFVLTYRPGTKNRKADALSRSFSPKDRLPIEQEPIIPPFRIIASVLPQFAE-------------------------QILLSQSAAPSDTPIGMAFVPPELRLPILQQTHSSKQAGHPGSEKTLELLRRLVWWPTIRKDVRDFVAACTVCATTKASHSRPCGLLHPLPIPSRPWTHLGMDFIVELPPSCG-NTVIWVVIDRFSKMAHFIPLRKLPSAVELAHLFIQHIFRLHGFPVEIVSDRGSQFVSRFWRSLCKSLGVSLQFSSAYHPQTNGAAERVNQALEQFLRNHVSLCQ---DDWSDLLPWAEFAHNNASHSSTGRSPFLSVYGQ 1220
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Mouse
Match: Rtl1 (retrotransposon Gaglike 1 [Source:MGI Symbol;Acc:MGI:2656842]) HSP 1 Score: 80.4925 bits (197), Expect = 1.742e-14 Identity = 72/300 (24.00%), Postives = 138/300 (46.00%), Query Frame = 1 Query: 2326 NKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQ------FCFNRM----PFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESICGKNNEKIRWTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQ-KDEKGHEHVIAYGSHAMSSHEKGYCITRKELLAI 3192 + +T+RQ + V E+ D LHG+ +F+ ++L KES+ + + E F ++M PF + + ++ +LKD+ V+ + ++L+++ ++E+H +VL + + + +K Q R+ + LG I+ G++ + + I P + L+S + + YR F++++A A L ++E W E ++A +K A +PVL P + F L+TD + + A L Q DE G + A+ S +S+ E Y +L I Sbjct: 898 DMLTDRQDYTQ-MVPELFDQLHGAAWFTKLELLGI-------KESEMRHTVTHTEDTWRASFGFGLHQMRCYRPFTMNSYSDEGNNIVHFILKDILGLFVICHGREVLVYSMSQEEHSQHVRQVLVRFRYHNIYCSLDKTQFHRQTAEILGFNISPKGVKLNKNLMNLIVGCPVPGSRRCLQSVIDLVYPYRHFVENFAVIAAPLVRQL-LSSEPYYWGEEEQEALESLKRAFRKSPVLYHPKPQNPFYLETDITGSFLSASLVQTDDETGKKSTCAFYSRPLSTMEVEYPRVEMRILPI 1188
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Mouse
Match: Rtl1 (retrotransposon Gaglike 1 [Source:MGI Symbol;Acc:MGI:2656842]) HSP 1 Score: 80.4925 bits (197), Expect = 1.742e-14 Identity = 72/300 (24.00%), Postives = 138/300 (46.00%), Query Frame = 1 Query: 2326 NKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQ------FCFNRM----PFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESICGKNNEKIRWTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQ-KDEKGHEHVIAYGSHAMSSHEKGYCITRKELLAI 3192 + +T+RQ + V E+ D LHG+ +F+ ++L KES+ + + E F ++M PF + + ++ +LKD+ V+ + ++L+++ ++E+H +VL + + + +K Q R+ + LG I+ G++ + + I P + L+S + + YR F++++A A L ++E W E ++A +K A +PVL P + F L+TD + + A L Q DE G + A+ S +S+ E Y +L I Sbjct: 898 DMLTDRQDYTQ-MVPELFDQLHGAAWFTKLELLGI-------KESEMRHTVTHTEDTWRASFGFGLHQMRCYRPFTMNSYSDEGNNIVHFILKDILGLFVICHGREVLVYSMSQEEHSQHVRQVLVRFRYHNIYCSLDKTQFHRQTAEILGFNISPKGVKLNKNLMNLIVGCPVPGSRRCLQSVIDLVYPYRHFVENFAVIAAPLVRQL-LSSEPYYWGEEEQEALESLKRAFRKSPVLYHPKPQNPFYLETDITGSFLSASLVQTDDETGKKSTCAFYSRPLSTMEVEYPRVEMRILPI 1188
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Mouse
Match: Zcchc13 (zinc finger, CCHC domain containing 13 [Source:MGI Symbol;Acc:MGI:1922314]) HSP 1 Score: 55.0694 bits (131), Expect = 7.190e-8 Identity = 25/58 (43.10%), Postives = 35/58 (60.34%), Query Frame = 2 Query: 803 CWTCQKPGHSSRECNIKRRFQCYACGVEGHIRRECPTIKCHRCNARGHKERECYTNME 976 C+ C +PGH +R+CN + +CY CG GHI+++C IKC+RC GH C E Sbjct: 91 CYICSQPGHLARDCNRQEEQKCYTCGEFGHIQKDCTQIKCYRCGENGHMAVNCSKTSE 148
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Mouse
Match: Cnbp (cellular nucleic acid binding protein [Source:MGI Symbol;Acc:MGI:88431]) HSP 1 Score: 54.299 bits (129), Expect = 1.575e-7 Identity = 22/48 (45.83%), Postives = 33/48 (68.75%), Query Frame = 2 Query: 803 CWTCQKPGHSSRECNIKRRFQCYACGVEGHIRRECPTIKCHRCNARGH 946 C+ C KPGH +R+C+ +CY+CG GHI+++C +KC+RC GH Sbjct: 99 CYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGH 146
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Mouse
Match: Cnbp (cellular nucleic acid binding protein [Source:MGI Symbol;Acc:MGI:88431]) HSP 1 Score: 53.9138 bits (128), Expect = 1.638e-7 Identity = 22/48 (45.83%), Postives = 33/48 (68.75%), Query Frame = 2 Query: 803 CWTCQKPGHSSRECNIKRRFQCYACGVEGHIRRECPTIKCHRCNARGH 946 C+ C KPGH +R+C+ +CY+CG GHI+++C +KC+RC GH Sbjct: 98 CYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGH 145
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. UniProt/SwissProt
Match: sp|P20825|POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1) HSP 1 Score: 340.117 bits (871), Expect = 2.138e-96 Identity = 291/979 (29.72%), Postives = 460/979 (46.99%), Query Frame = 1 Query: 1633 QGRKVDCLLDTGARINVMAKSVIDRLENIEILETRESLRCANNSRLETMGKLNINVKMGSMERNVTF-----------------IIVKNLIPEIIGGVELQR----LFGIELKYILEEHEKRSDFICEIEARFGRIITDEERLRHA------IDVLKVTGNKRLLEIFQANKNVFMADKWDIGCTNLIKHKI-ITKGEPIMIKPRRQPINLEDKIEEAIKNLENNGIIRKCNSPWNTPLVCVWKKEKKD----IRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESICGKNNEKIRWTEMCE--KAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEKGHEHVIAYGSHAMSSHEKGYCITRKELLAIYYFCKHFNHYLYGKRFVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLSR-----KTCGTCVQCMMEHEDAK--------TGKIKTRILTVTAE-----------GGYNKWQNDNMEVQEIKNKLENKDCKFIMENNTV---------LTKQGKIWIPSDNRQRMIKEVHVL-------------------LCHAGAQKVTKYIQNNCDMENLATEVKKVIENCERCXXXXXXXXXXXXXXXXXXXXEP-FEKIYMDICGPLKETFNKKKYICGIIDHYSKYISLTAINKQDERTISETLLNKWILKFGAPKELHVDCGKNFEARSIKELAKTAGIELIFSSPYHHNTNGI--IERQFRTIREYINASLNEGGRKNWADIVPEIEYTLNATVQK-TTGVSPAEIIF 4299 +GR CLLDTG+ IN++ ENI L + S RC L + G + +N + + RN F +I + L+ + + LF K I E E+ + + +D+E ++ +D L +L + +N+ + + TN IKH + T PI K E ++E ++ + N G+IR+ NSP+N+P V KK R+ +D+R+LN+IT +P+PN+DEIL L +YF++IDL ++Q+++D+ES KTAFSTK G + + RMPFG+ AP TFQ M +L+ L +VYLDDI+IF+ + +H N V K+A A L+L +KC+ +KE FLGHI+ DGI+ + K++AI S+ P K +R+FLG+ YYR+FI +YA A+ + S C K KI T+ E +AF ++K +I P+L PDF K+F+L TDAS +GAVLSQ H I++ S ++ HE Y KELLAI + K F HYL G++F++ +DH+ + ++ K+P A+ + W LS K++Y KG ++ AD LSR Q E +++ K +I+ + ++ Q D M +++ K L + FI N T+ + ++ I I + ++I+ + +L L H G QK+TK + N N ++ +I C C KT TK + + E EK +DI ++ K+ ID YSK+ +L I +D L+ + + G PK L D F + ++K + +EL ++ NG+ +ER +TI E I + + + I YT N ++ TTG PA+I Sbjct: 21 KGRSYKCLLDTGSTINMIN-------ENIFCLPIQNS-RC---EVLTSNGPITLN-DLIMLPRNSIFKKTEPFYVHRFSNNYDMLIGRKLLKNAQSVINYKNDTVTLFDQTYKLITSESERNQNLYIQRTPE-SIASSDQESIKKLDFSQFRLDHLNQEETFKLKGLLNKFRNLEYKEGEKLTFTNTIKHVLNTTHNSPIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTS-CLKKRTKID-TQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNG-----HPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEP-GAKLERWRVRLSEYQFKIDYIKGKENSVADALSRIKIEENHHSEATQHSAEEDNSNLIHLTEKPINYFKKQIIFIKSDKNKVEHSKIFGNSITTIQYDVMTLEKAKQILLD---HFIHRNITIYIESDVDFEIVQRAHIEIVNTTYTKVIRSLFLLKNVGSYAEFKEIILQSHEKLLHPGIQKMTKLFKENHFFPNSQLLIQNIINECNICNLAKTEHRNTKMPLKITPNPEHCREKFVVDIYS------SEGKHYISCIDIYSKFATLEQIKTKDWIECRNALM-RIFNQLGKPKLLKADRDGAFSSLALKRWLEEEEVELQLNTA----KNGVADVERLHKTINEKIRIINSSDDEEVKLSKIETILYTYNQKIKHDTTGQRPAQIFL 964
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. UniProt/SwissProt
Match: sp|P04323|POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1) HSP 1 Score: 332.798 bits (852), Expect = 7.612e-94 Identity = 209/628 (33.28%), Postives = 329/628 (52.39%), Query Frame = 1 Query: 1606 GRPS-TTLDIQGRKVDCLLDTGARINVMAKSVIDRLENIEILETRESLRCAN-----NSRLETMGKLNINVK----MGSMERNVTFIIVKNLIPEIIGGVELQ----RLFGIELKYI--LEEHEKR--------SDFICEIEARFGRII-TDEERLRHAIDVLKVTGNKRLLEIFQANKNVFMADKWDIGCTNLIKHKIITKGEPIMIKPRRQPINLEDKIEEAIKNLENNGIIRKCNSPWNTPLVCVWKKE----KKDIRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESICGKNNEKIRWTEM-CEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEKGHEHVIAYGSHAMSSHEKGYCITRKELLAIYYFCKHFNHYLYGKRFVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLSR 3399 G+P T+ + + CL+DTG+ +N+ +K++ D + I T + +N N + K+ + N ++ + L+ E + + L+ + K I + HE+ D + + I+ +D RL H L +RL + Q ++ + + TN KH I TK + P E ++E I+++ N GIIR NSP+N+P+ V KK+ K+ R+ +D+R+LN+IT P+PN+DEIL L YF++IDL ++Q+++D ES KTAFSTK G + + RMPFG+ AP TFQ M +L+ L +VYLDDI++F+ + ++H G V K+A A L+L +KC+ ++E FLGH++ DGI+ + KIEAIQ + P K +++FLG+ YYR+FI ++A A+ + + C K N KI T + AF ++K + P+L PDF K+F L TDAS +GAVLSQ H ++Y S ++ HE Y KELLAI + K F HYL G+ F + +DH+ ++++ K P ++ W LS D ++Y KG + AD LSR Sbjct: 11 GKPQYITIKYKENNLKCLIDTGSTVNMTSKNIFD----LPIQNTSTFIHTSNGPLIVNKSIIIPSKILFPTTNEFLLHPFSENYDLLLGRKLLAEAKATISYRDQEVTLYNNKYKLIEGIATHEQSHFQNVNMIPDTMLRQPNKISPILESDLYRLEH----LNNEEKQRLCALLQKYHDIQYHEGDKLTFTNQTKHTINTKHNLPLYSKYSYPQAYEQEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPM-TKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDG-----HPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDP-NSKLTRWRVKLSEFDFDIKYIKGKENCVADALSR 623
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. UniProt/SwissProt
Match: sp|Q99315|YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3) HSP 1 Score: 326.635 bits (836), Expect = 1.143e-89 Identity = 264/873 (30.24%), Postives = 420/873 (48.11%), Query Frame = 1 Query: 2113 IKHKIITKGEPIMIKPRRQPINLEDKIEEAI----KNLENNGIIRKCNSPWNTPLVCVWKKEKKDIRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALE-SICGKNNEKIRWTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEKGH-EHVIAYGSHAMSSHEKGYCITRKELLAIYYFCKHFNHYLYGKRFVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLSRK----TCGTCVQCMMEHEDA--KTGKIKTRILTVTAE-GGYNKWQNDNMEVQEIKNKLENKDC---KFIMENNTVLTKQGKIWIPSDNRQRMIKEVH---VLLCHAGAQKVTKYIQNNCDMENLATEVKKVIENCERCXXXXXXXXXXXXXXXXXXXXEP-FEKIYMDICGPLKETFNKKKYICGIIDHYSKYISLTAINKQDERTISETLLNKWILKF-GAPKELHVDCGKNFEARSIKELAKTAGIELIFSSPYHHNTNGIIERQFRTIREYINASLNEGGRKNWADIVPEIEYTLNATVQKTTGVSPAEIIFGRKIDRMKWYSNKEINRE-----DMEKRIEDKTLKPKISKTVRNFEME---------------DVVLIKQEIRNKDDAR------WEGPYKVIKKIHERSYL--LKDQNGKMVVRNVEKIKHF 4584 +KH I K P PR QP ++ +K E+ I + L +N I SP ++P+V V KK+ RLC+D+R LNK T FP+P +D +L + ++ F+++DL + Y+Q+ ++ + + KTAF T G++ + MPFG+ AP TF M +DL V VYLDDILIF+++ E+H+ VL ++ L + +KC+ +E +FLG+ I I K AI+ F PK VK + FLG+ NYYRRFI + +K A+ ++ IC K+ +WTE +KA ++K+AL +PVLV + + + L TDAS D IGAVL + D K V+ Y S ++ S +K Y ELL I HF + L+GK F LRTDH ++ + +P + Q W++ L++ D +EY G + AD +SR T T E + K+ + + +L E +N D + + KLE + + +E+ + Q ++ +P + +++ H + H G I L + + I C +CQ +K+ + Q + E + I MD L T N I ++D +SK A K + T LL ++I + G P+ + D A +EL K GI+ SS H T+G ER +T+ + A + +NW +P+IE+ N+T +T G SP EI G + S+ E+N ++ K ++ T++ K EME D VL+ ++ K A + GP++V+KKI++ +Y L K V NV+ +K F Sbjct: 584 VKHDIEIK--PGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGT-FRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICDKS----QWTEKQDKAIDKLKDALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEP-ARRVQRWLDDLATYDFTLEYLAGPKNVVADAISRAVYTITPETSRPIDTESWKSYYKSDPLCSAVLIHMKELTQHNVTPEDMSAFRSYQKKLELSETFRKNYSLEDEMIYY-QDRLVVPIKQQNAVMRLYHDHTLFGGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYASTNI-QNWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPAIKSDDEVNARSFTAVELAKHLKALTIQTKEQLEHAQIEMETNNNQRRKPLLLNIGDHVLVHRDAYFKKGAYMKVQQIYVGPFRVVKKINDNAYELDLNSHKKKHRVINVQFLKKF 1444
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. UniProt/SwissProt
Match: sp|Q7LHG5|YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2) HSP 1 Score: 323.939 bits (829), Expect = 5.623e-89 Identity = 258/853 (30.25%), Postives = 412/853 (48.30%), Query Frame = 1 Query: 2113 IKHKIITKGEPIMIKPRRQPINLEDKIEEAI----KNLENNGIIRKCNSPWNTPLVCVWKKEKKDIRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALE-SICGKNNEKIRWTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEKGH-EHVIAYGSHAMSSHEKGYCITRKELLAIYYFCKHFNHYLYGKRFVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLSRK----TCGTCVQCMMEHEDA--KTGKIKTRILTVTAE-GGYNKWQNDNMEVQEIKNKLENKDC---KFIMENNTVLTKQGKIWIPSDNRQRMIKEVH---VLLCHAGAQKVTKYIQNNCDMENLATEVKKVIENCERCXXXXXXXXXXXXXXXXXXXXEP-FEKIYMDICGPLKETFNKKKYICGIIDHYSKYISLTAINKQDERTISETLLNKWILKF-GAPKELHVDCGKNFEARSIKELAKTAGIELIFSSPYHHNTNGIIERQFRTIREYINASLNEGGRKNWADIVPEIEYTLNATVQKTTGVSPAEIIFGRKIDRMKWYSNKEINRE-----DMEKRIEDKTLKPKISKTVRNFEME---------------DVVLIKQEIRNKDDAR------WEGPYKVIKKIHERSYLL 4530 +KH I K P PR QP ++ +K E+ I + L +N I SP ++P+V V KK+ RLC+D+R LNK T FP+P +D +L + ++ F+++DL + Y+Q+ ++ + + KTAF T G++ + MPFG+ AP TF M +DL V VYLDDILIF+++ E+H+ VL ++ L + +KC+ +E +FLG+ I I K AI+ F PK VK + FLG+ NYYRRFI + +K A+ ++ IC K+ +WTE +KA ++K AL +PVLV + + + L TDAS D IGAVL + D K V+ Y S ++ S +K Y ELL I HF + L+GK F LRTDH ++ + +P + Q W++ L++ D +EY G + AD +SR T T E + K+ + + +L E +N D + + KLE + + +E+ + Q ++ +P + +++ H + H G I L + + I C +CQ +K+ + Q + E + I MD L T N I ++D +SK A K + T LL ++I + G P+ + D A +EL K GI+ SS H T+G ER +T+ + A ++ +NW +P+IE+ N+T +T G SP EI G + S+ E+N ++ K ++ T++ K EME D VL+ ++ K A + GP++V+KKI++ +Y L Sbjct: 610 VKHDIEIK--PGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGT-FRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICDKS----QWTEKQDKAIEKLKAALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEP-ARRVQRWLDDLATYDFTLEYLAGPKNVVADAISRAIYTITPETSRPIDTESWKSYYKSDPLCSAVLIHMKELTQHNVTPEDMSAFRSYQKKLELSETFRKNYSLEDEMIYY-QDRLVVPIKQQNAVMRLYHDHTLFGGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYVSTNI-QNWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPAIKSDDEVNARSFTAVELAKHLKALTIQTKEQLEHAQIEMETNNNQRRKPLLLNIGDHVLVHRDAYFKKGAYMKVQQIYVGPFRVVKKINDNAYEL 1450
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. UniProt/SwissProt
Match: sp|P10394|POL4_DROME (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1) HSP 1 Score: 312.768 bits (800), Expect = 3.829e-86 Identity = 165/452 (36.50%), Postives = 257/452 (56.86%), Query Frame = 1 Query: 2068 NVFMADKWDIGCTNLIKHKI-ITKGEPIMIKPRRQPINLEDKIEEAIKNLENNGIIRKCNSPWNTPLVCVWKK-----EKKDIRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESICGKNNEKIRWTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEKGHEHVIAYGSHAMSSHEKGYCITRKELLAIYYFCKHFNHYLYGKRFVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLSRKT 3405 ++F + I NL K ++ + EP+ K R P + ++I+ ++ L + I+ S +N+PL+ V KK +KK RL +D+RQ+NK FP+P +D+ILD L ++YFS +DL + ++Q++LD+ S++ T+FST G + F R+PFG+ AP +FQ +MT + +Y+DD+++ +E+ +V GK L+L+PEKC F EV FLGH GI D+ K + IQ++ P + R F+ CNYYRRFIK++A +R + +C K N WT+ C+KAF +K LI +L +PDF KEF + TDAS GAVL+Q + GH+ +AY S A + E T +EL AI++ HF Y+YGK F ++TDH+ +T++ + P + + + L + +EY KG + AD LSR T Sbjct: 288 DIFALESEPITVNNLYKQQLRLKDDEPVYTKNYRSPHSQVEEIQAQVQKLIKDKIVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLLADKFPLPRIDDILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITSFSTSNGSYRFTRLPFGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGKCREYNLKLHPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYRRFIKNFADYSRHITRLC-KKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTDASKQACGAVLTQ-NHNGHQLPVAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTDHRPLTYLFSMVNPSSKLTRIRLE-LEEYNFTVEYLKGKDNHVADALSRIT 736 HSP 2 Score: 106.301 bits (264), Expect = 1.696e-21 Identity = 87/330 (26.36%), Postives = 158/330 (47.88%), Query Frame = 1 Query: 3673 HAGAQKVTKYIQNNCDMENLATEVKKVIENCERCXXXXXXXXXXXXXXXXXXXXEPFEKIYMDICGPLKETFNKKKYICGIIDHYSKYISLTAINKQDERTISETLLNKWILKFGAPKELHVDCGKNFEARSIKELAKTAGIELIFSSPYHHNTNGIIERQFRTIREYINASLNEGGRKNWADIVPEIEYTLNATVQKTTGVSPAEIIFGRKIDRMKWYSNKE-----INREDMEK----RIE------DKTLKPKISKTVRNFEME---------DVVLIKQEIRNKDDARWEGPYKVIKKIHERS--YLLKDQNGKMVVRNVEKIKHF 4584 H G K ++ + +N++ +K+ + C++CQK KT T T F+++ +D GPL ++ N +Y +I +KY+ I + +T+++ + +ILK+G K D G ++ I +L K I+ I S+ +HH T G++ER RT+ EYI + ++ + +W + Y N T P E++FGR + K ++ N +D K R+E K L+ K N++++ D VL++ E+ +K D ++ GPYK I+ I + + LL ++N K +V +++K F Sbjct: 909 HTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKTTKHTKTPMTITETPEHAFDRVVVDTIGPLPKSENGNEYAVTLICDLTKYLVAIPIANKSAKTVAKAIFESFILKYGPMKTFITDMGTEYKNSIITDLCKYLKIKNITSTAHHHQTVGVVERSHRTLNEYIRSYIS-TDKTDWDVWLQYFVYCFNTTQSMVHNYCPYELVFGRTSNLPKHFNKLHSIEPIYNIDDYAKESKYRLEVAYARARKLLEAHKEKNKENYDLKVKDIELEVGDKVLLRNEVGHKLDFKYTGPYK-IESIGDNNNITLLTNKNKKQIVHK-DRLKKF 1235
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. TrEMBL
Match: A0A0V0RP87 (Transposon Ty3-G Gag-Pol polyprotein OS=Trichinella nelsoni OX=6336 GN=TY3B-G PE=4 SV=1) HSP 1 Score: 554.673 bits (1428), Expect = 7.783e-167 Identity = 334/1089 (30.67%), Postives = 567/1089 (52.07%), Query Frame = 1 Query: 1612 PSTTLDIQGRKVDCLLDTGARINVMAKSVIDRLENIEILETRE-SLRCANNSRLETMGKLNINVKMGSMERNVTFIIVKNLI-PEIIG--------------GVELQRLFGIELKYILE-EHEKRSDFICEIEARFGRIITDEERL---------------RHAIDVLKVTGNKR--LLEIFQANKNVFMADKWDIGCTNLIKHKIITKG-EPIMIKPRRQPINLEDKIEEAIKNLENNGIIRKCNSPWNTPLVCVWKKEKKDIRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDL-WKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESICGKNNEKIRWTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEKGHEHVIAYGSHAMSSHEKGYCITRKELLAIYYFCKHFNHYLYGKRFVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLSRKTCGTCVQCMMEHEDAKTGKIKTRILTVTAEGGYNKWQNDNMEVQEIKN--------KLENKDCKFI----MENNTVLTKQGKI---WIPSDN----------RQR---MIKEVH--VLLCHAGAQKVTKYIQNNCDMENLATEVKKVIENCERCXXXXXXXXXXXXXXXXXXXXEPFEKIYMDICGPLKETFNKKKYICGIIDHYSKYISLTAINKQDERTISETLLNKWILKFGAPKELHVDCGKNFEARSIKELAKTAGIELIFSSPYHHNTNGIIERQFRTIREYI-NASLNEGGRKNWADIVPEIEYTLNATVQKTTGVSPAEIIFGRKI----------------DRMKWYSNKEINREDMEKRIEDKTLKPKISKTVRN-------------FEMEDVVLIKQEIRNKDDARWEGPYKVIKKIHERSYLLKDQNGK--MVVRNVEKIKHF 4584 PS + G ++ LLD+GA ++V+ S + E L+ S+ + R+ G+ + +++GS + IV++L+ P I+G E+ G ++ + E H R C R ++ EE + R +D + + R L + + + D+G T+L++H+I T G +P+ + PRR P + ++ I+ + + G+I + PW++P+V V KK+ R C+D+R+LN +T A P+P +D+ LD L G+++FS++DL + Y+QV++ +E +EKTAFST G F F MPFG+ AP TFQ LM K L+ L WK +VYLDDI++F KTEE+H VL ++ + GL++ PEKCQ+ R+ V +LGH++ + GI TD K A+Q + P+CV+ +R FLG+ +YYRRF++++A A L ++ K EK W E+AF +K+AL++ P+L PDF + F+LD DAS D +GAVLSQ+ E+ VIAY S ++S E+GYC TR+E+LA+ + +HF YLYG+RF+ RTDH ++ ++ + ++P Q W+ L+ D ++ +R G H NAD LSR+ C QC ME A ++ + + A +WQ + E+Q+I+ + + + + + + ++ ++G I W D RQR ++ VH H G K ++ +V+ CE C T K + Q PF+++ MD+ GPL+ET N +YI D++SK+ A+ + RT++ L+N ++GAP+ LH D G+NFE+ +KE+ + G+ ++ YH ++G++ER RT+ + + AS++ +W + + ++V TTG +P+ +IFGR++ + + Y+ + R+D+E+ E T++ K + R +E D V ++ + K A W+GPY+V KK+ +Y +K G+ +V + +++K + Sbjct: 386 PSVAGKLNGLEIPLLLDSGAVVSVVPLSTWHKSTGGEPLKAAGGSILLGDGRRVRLCGQGTLPLQLGSWRGRLHVAIVESLVVPGILGTNFLDQYVKLIDWQAGEMTMTDGSSVRIVHEPSHATRPGIGCTWITASPREVSREETVGERPGNNSGELGACERALVDRAECSAQNRRALRSLIRRYGKAISCGEGDLGRTSLVQHRIETGGAQPVKLPPRRLPQAQRETVDRLIREMLHAGVIEPASGPWSSPVVLVRKKDGSP-RFCVDYRRLNAVTRVDAQPIPRIDDTLDALAGAKWFSTLDLASGYWQVEVAEEDREKTAFSTPLGLFQFRVMPFGLCNAPATFQRLMEKALRGLTWKT-CLVYLDDIIVFGKTEEEHLERLEGVLSRLQSVGLKIKPEKCQLMRQSVHYLGHVVTQQGIGTDPEKTAAVQKWPTPRCVREVRQFLGLASYYRRFVRNFAGVANPLHALT-KKGEKWHWGPKEEEAFTLLKKALVSPPILGHPDFDRTFLLDVDASEDAVGAVLSQQGERDPPSVIAYASRSLSRAERGYCATRREMLALVWATQHFRPYLYGRRFIARTDHNSLRWLRSFREP-EGQVARWLERLAEFDFEVVHRAGRKHQNADALSRR---VCKQCGMEGSPA---EVPVGAVKLDAASPIKQWQESDKELQQIREWSTQRTWPRAAPEGSRLLRSLWAQRDRIVVREGTICRKWETPDTGETRLLQVIPRQRIPEILAAVHNGQSGAHLGVAKTLAKLRQRYYWPQQREDVEDWCRACETCAARAVPTKKPQAPMQLQPVGYPFQRVGMDLLGPLEETRNGNRYILVACDYFSKWPEAFALPNAEARTVAAALVNGLFCRYGAPETLHSDQGRNFESALVKEVCQLFGVAKTRTTAYHPQSDGLVERMNRTLLDLLAKASIDHP--DDWDAHLDRVLLAYRSSVHHTTGATPSRVIFGREMRLPVDLVYGLPENAPEESVGEYTRR--LRQDLEQLYE--TVRGKAGREQRRQKFWKDRKAHGPVYEPGDQVWMQVPEKTKLGAYWDGPYEVQKKLDWNTYRVKQMKGRRQRLVVHFDRLKPY 1458
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. TrEMBL
Match: A0A0V0X0B7 (Transposon Ty3-G Gag-Pol polyprotein OS=Trichinella sp. T6 OX=92179 GN=TY3B-G PE=4 SV=1) HSP 1 Score: 554.288 bits (1427), Expect = 2.191e-166 Identity = 334/1089 (30.67%), Postives = 567/1089 (52.07%), Query Frame = 1 Query: 1612 PSTTLDIQGRKVDCLLDTGARINVMAKSVIDRLENIEILETRE-SLRCANNSRLETMGKLNINVKMGSMERNVTFIIVKNLI-PEIIG--------------GVELQRLFGIELKYILE-EHEKRSDFICEIEARFGRIITDEERL---------------RHAIDVLKVTGNKR--LLEIFQANKNVFMADKWDIGCTNLIKHKIITKG-EPIMIKPRRQPINLEDKIEEAIKNLENNGIIRKCNSPWNTPLVCVWKKEKKDIRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDL-WKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESICGKNNEKIRWTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEKGHEHVIAYGSHAMSSHEKGYCITRKELLAIYYFCKHFNHYLYGKRFVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLSRKTCGTCVQCMMEHEDAKTGKIKTRILTVTAEGGYNKWQNDNMEVQEIKN--------KLENKDCKFI----MENNTVLTKQGKI---WIPSDN----------RQR---MIKEVHVLLC--HAGAQKVTKYIQNNCDMENLATEVKKVIENCERCXXXXXXXXXXXXXXXXXXXXEPFEKIYMDICGPLKETFNKKKYICGIIDHYSKYISLTAINKQDERTISETLLNKWILKFGAPKELHVDCGKNFEARSIKELAKTAGIELIFSSPYHHNTNGIIERQFRTIREYI-NASLNEGGRKNWADIVPEIEYTLNATVQKTTGVSPAEIIFGRKI----------------DRMKWYSNKEINREDMEKRIEDKTLKPKISKTVRN-------------FEMEDVVLIKQEIRNKDDARWEGPYKVIKKIHERSYLLKDQNGK--MVVRNVEKIKHF 4584 PS + G ++ LLD+GA ++V+ S+ + E LE S+ + R+ G+ + +++GS + IV++L+ P I+G E+ G ++ E H R C R ++ EE + R +D + + R L + + + D+G T+L++H+I T G +P+ + PRR P + ++ I+ + + G+I + PW++P+V V KK+ R C+D+R+LN +T A P+P +D+ LD L G+++FS++DL + Y+QV++ +E +EKTAFST G F F MPFG+ AP TFQ LM K L+ L WK +VYLDDI++F KTEE+H VL ++ + GL++ PEKCQ+ R+ V +LGH++ + GI TD K A+Q + P+CV+ +R FLG+ +YYRRF++++A A L ++ K EK W E+AF +K+AL++ P+L PDF + F+LD DAS D +GAVLSQ+ + VIAY S ++S E+GYC TR+E+LA+ + +HF YLYG+RF+ RTDH ++ ++ ++P Q W+ L+ D ++ +R G H NAD LSR+ C QC +E T ++ + + A +WQ + E+Q+I+ + + + + + + ++ ++G I W D RQR ++ VH H G K ++ +V+ CE C T K + Q PF+++ MD+ GPL+ET N +YI + D++SK+ A+ + RT++ L++ ++GAP+ LH D G+NFE+ +KE+ + G+ ++ YH ++G++ER RT+ + + AS++ +W + + ++V TTG +P+ IIFGR++ + + Y+ + R+D+E+ E T++ K + R +E D V I+ + K A W+GPY+V KK+ +Y +K+ G+ +V + +++K + Sbjct: 346 PSVAGKLNGFEISLLLDSGAVVSVVPLSIWHKSTGGEPLEAAGGSILLGDGRRVRLCGQGTLPLQLGSWRGRLHVAIVESLVVPGILGTNFLDQYVKLIDWQAGEMTMTDGSSVRIAHEPSHATRPGIGCTWITAGPREVSREETVGERPGNDSGELGACERALVDRAECSAQNRRTLRSLIRRYGKAISCGEGDLGRTSLVQHRIETGGAQPVKLPPRRLPQAQRETVDRLIREMLHAGVIEPASGPWSSPVVLVQKKDGSP-RFCVDYRRLNAVTRVDAQPIPRIDDTLDALAGAKWFSTLDLASGYWQVEVAEEDREKTAFSTPLGLFQFRVMPFGLCNAPATFQRLMEKALRGLTWKT-CLVYLDDIIVFGKTEEEHLERLEGVLSRLQSVGLKIKPEKCQLMRQSVHYLGHVVTQQGIGTDPEKTAAVQKWPTPRCVREVRQFLGLASYYRRFVRNFAGVANPLHALT-KKGEKWHWGPKEEEAFTLLKKALVSPPILGHPDFDRTFLLDVDASEDAVGAVLSQQGGQDPPSVIAYASRSLSRAERGYCATRREMLALVWATQHFRPYLYGRRFIARTDHNSLRWLRNFREP-EGQVARWLERLAEFDFEVVHRAGRKHQNADALSRR---VCKQCGLE---GSTAEVPVGAVRLDAANPIKQWQESDKELQQIREWSTQRTWPRAAPEGSRLLRSLWAQRDRIVVREGTICRKWETPDTGETRLLQVIPRQRIPEILAAVHNGQSGGHLGVAKTLAKVRQRYYWPQQREDVEDWCRACETCAARAVPTKKPQAPMQLQPVGYPFQRVGMDLVGPLEETRNGNRYILVVCDYFSKWPEAFALPNAEARTVAAALVDGLFCRYGAPETLHSDQGRNFESALVKEVCQLFGVAKTRTTAYHPQSDGLVERMNRTLLDLLAKASIDHP--DDWDAHLNRVLLAYRSSVHHTTGATPSRIIFGREMRLPVDLVYGLPENTPEESVGEYTRR--LRQDLEQLYE--TVRGKAGREQRRQKFWKDRKAHGPVYEPGDQVWIQVPEKTKLGAYWDGPYEVQKKLDWNTYRVKEMKGRRQRLVVHFDRLKPY 1418
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. TrEMBL
Match: A0A087SUZ9 (Retrovirus-related Pol polyprotein from transposon 412 (Fragment) OS=Stegodyphus mimosarum OX=407821 GN=X975_16630 PE=4 SV=1) HSP 1 Score: 549.666 bits (1415), Expect = 1.844e-163 Identity = 313/930 (33.66%), Postives = 509/930 (54.73%), Query Frame = 1 Query: 2065 KNVFMADKWDIGCTNLIKHKIITKGEP-IMIKPRRQPINLEDKIEEAIKNLENNGIIRKCNSPWNTPLVCVWKKEKKDIRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESICGKNNEKIRWTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEKGHEHVIAYGSHAMSSHEKGYCITRKELLAIYYFCKHFNHYLYGKRFVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLSRKTCG-TCVQCMMEHEDAKTGKIKTRILTVTAEGGYNKWQNDNMEVQEIKNKLENKDCKFIME---------------------------------NNTVLTKQ-----GKIW-----IPSDNRQRMIKEVHVLLC--HAGAQKVTKYIQNNCDMENLATEVKKVIENCERCXXXXXXXXXXXXXXXXXXXXEPFEKIYMDICGPLKETFNKKKYICGIIDHYSKYISLTAINKQDERTISETLLNKWILKFGAPKELHVDCGKNFEARSIKELAKTAGIELIFSSPYHHNTNGIIERQFRTIREYINASLNEGGRKNWADIVPEIEYTLNATVQKTTGVSPAEIIFGRKIDRMK----------WYSNKEINREDMEKRIEDKTLKPKISKTVRNFEMEDVVLIKQEIRNKDDAR------------------------------WEGPYKVIKKIHERSY-LLKDQNGKMVVRNVEKIKHFKK 4590 ++VF D+G T+L +H+I T P I PRR PI ++++ +K+++ + +I SPW +P+V V KK+ R C+D+R+LN++T++ ++P+P +D+ILD L GS++FS++DL + Y+QV++ + +EKTAF+T +G + F MPFG+ AP TF+ LM VLK L + ++YLDDI+I K+ E+H KVL K+ A L+L+P KC++FR+EV +LGH+I+ +G++TD K+ A++ +++P+ V LRSFLG+C YYRRF+KD++ AR L + ++ +K WT+ CE AF +KEAL +AP+L +P + FILDTDAS +++GAVLSQ+ E G E V+AY S +S E+ YC+TRKELLAI +HF+HYLYG++F+LRTDH ++ +++ K P Q WI L DI + +RKG SH NAD LSR+ C C C + R +T + + W + + K++L+++D K I+E N VL ++ GK + +P ++KE+H H G K + ++ N +V+K C+ C K +++ + Q PFE+I DI GPL T + KYI ID+++K+ I Q+ T++E ++ WI +FG P +LH D G+NF + +KEL K GI+ ++P H ++G++ER RTI ++ ++ +++W +P + V +TTG SP++++FGR + R+ S+ E +D++ R E + NF E V L ++++ + D R W+GPY V+ ++++ + K N K V + ++++ KK Sbjct: 643 QDVFSRSSSDVGRTSLTQHRIDTGDHPPIKQHPRRLPIAKQEEVRALLKDMQESNVIEPSASPWASPIVLVRKKDGS-TRFCVDYRRLNEVTKKDSYPLPRIDDILDTLSGSKWFSTLDLKSGYWQVEIHPDDREKTAFTTGQGLWQFKVMPFGLCNAPATFERLMETVLKGLSYEACLIYLDDIIIVGKSFEEHLENLRKVLQKLKEANLKLSPAKCKLFRQEVTYLGHVISAEGVRTDPEKVSAVKDWRRPENVHQLRSFLGLCTYYRRFVKDFSSIARPLHKLT-ESKQKFVWTKECENAFKNLKEALTSAPILTYPQLDRPFILDTDASNESVGAVLSQEIE-GQERVVAYWSKCLSKPERNYCVTRKELLAIVKAVEHFHHYLYGRKFLLRTDHASLAWLLNFKNP-EGQIARWIQRLQEYDITIRHRKGQSHGNADALSRRPCPENCRYCSRVEAKYQLVNPVARQITASTLADPDPWTDKEIR----KDQLQDRDIKPIIELMETSNRKPTWQDISSYSPTTKQYWALWDSLHIRNGVLYRKFESDDGKTFRWQLVLPRSRIPDVLKELHSSPAGGHFGIMKTLQRVRERFYWNNAKDDVQKWCRTCDACVSRKGPKKRSRGKLQRYNVGAPFERIAFDILGPLPRTADGNKYILVAIDYFTKWPEAYPIPDQEAVTVAEMMIQHWISRFGVPLQLHSDQGRNFTSAVVKELCKLLGIDKTQTTPLHPQSDGMVERFNRTILNNLSLVVSR-NQQDWDKKLPLFLLAYRSAVHETTGYSPSQMLFGRDL-RLPCDLLFGRPPDAPSSPEEYIQDLQARFE----------VMHNFARERVNLATEKMKTRYDTRATGHRFNEGDKVWLWNPTRRKGLSPKLQSPWDGPYTVLNRLNDVVVRIRKSSNSKPKVVHYDRLQARKK 1552
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. TrEMBL
Match: A0A5S6QWV2 (Uncharacterized protein OS=Trichuris muris OX=70415 PE=4 SV=1) HSP 1 Score: 530.406 bits (1365), Expect = 4.140e-163 Identity = 307/976 (31.45%), Postives = 536/976 (54.92%), Query Frame = 1 Query: 1630 IQGRKVDCLLDTGARINVMAKSVIDRLENIEILETRE-SLRCANNSRLETMGKLNINVKMG-SMERNVTFIIVKNLI-PEIIGGVELQR------LFGIELKYILEEHEKRSDFICEIEARFGRIITDEER-LRHAIDVLKVTG--------NKRLLEIFQANKNVFMADKWDIGCTNLIKHKIIT-KGEPIMIKPRRQPINLEDKIEEAIKNLENNGIIRKCNSPWNTPLVCVWKKEKKDIRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESICGKNNEKIRWTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEKGHEHVIAYGSHAMSSHEKGYCITRKELLAIYYFCKHFNHYLYGKRFVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLSRKTCGTCVQCMMEHEDAKTGKIKTRILTVTAEGGYNKWQNDNMEVQEIKNKLENKDCK--------------FIMENNTVLTKQG---KIW-------------IPSDNRQRMIKEVHVLLC--HAGAQKVTKYIQNNCDMENLATEVKKVIENCERCXXXXXXXXXXXXXXXXXXXXEPFEKIYMDICGPLKETFNKKKYICGIIDHYSKYISLTAINKQDERTISETLLNKWILKFGAPKELHVDCGKNFEARSIKELAKTAGIELIFSSPYHHNTNGIIERQFRTIREYINASLNEGGRKNWADIVPEIEYTLNATVQKTTGVSPAEIIFGRKIDRMKWYSNKEIN-REDMEKRIEDKTLKPKIS 4401 I GR + +DTGA +++M+ + + ++ ++L + L A L +G +N+ +G S + T ++ +L P +IG L++ L+ E + ++D + E + T++ R ID + +G ++L ++F K V D+G T++++H+I T +PI + PRR P I++ + + G+I + +SPW+ P+V KK+ R C+D+R+LN TE+ P+P +D+ LDIL GSR+FS++DL + Y+QV+++ E + KTAFST G + F MPFG+ AP TFQ LM +VL+ L +VYLDDI+IF +T + +VL ++ AGL++ P KC++ +EV FLGH+++ GI TD K +++++ P+C LR F+G+ +YYR+F+K++A A L + K +++ W + CE+AF EMK L+TAP+L FPDF K F+LD DAS D +GAVLSQ + G EH IAY S A++ E+ YC TR+ELLA+ + KHF YLYG RF +RTDH + ++ ++P Q W+ L+ D+++ +R G H NAD LSR+TCG C + ++ A+ + + TA QN + +++ +K + +DC F + N ++ G ++W +PS R+ +++E+H H G ++ + + +A ++K C+ C K + ++++ Q+I++ PF+++ +D GPL +T K+Y+ ++D+++K+ A + +T+++ L++ +I +FG P+ +H D G++FEA + E + GI+ ++ YH +NG++ER RT+ + + A L++ + W +++P + N + TTG SP +FGR+ + ++ R D+ +R E +T+ +S Sbjct: 4 ICGRGTELTIDTGAAVSLMSHELFNDIQPADLLPIQNVRLITAAGDELRVVGTSTVNISIGKSPPTSHTLLVAHSLTCPCLIGADFLRQHKCIIDFTSGTLQMNGYEVKLKTDRLSEHSIATASLATEDLRTYEEIIDSMCASGATENDYETREQLKKLFWKYKGVLPTTDDDLGRTSVVRHRIRTGNAKPIKMGPRRMPHRDRPIIQDLVDRMLQQGVIERASSPWSFPVVLA-KKKNGSFRFCVDYRKLNDRTEKDVQPLPRIDDALDILSGSRWFSTLDLASGYWQVEVEPEDRPKTAFSTPTGSYQFRVMPFGLCNAPATFQRLMEQVLEGLQWKTCLVYLDDIIIFGRTTTEQMERLEEVLNRLQAAGLKVKPSKCKLMTQEVVFLGHVVSGKGISTDPLKCATVENWEPPRCTNELRQFIGLASYYRKFVKNFASIAAPLHRLLQK-DKRWSWDDDCERAFQEMKRRLLTAPILKFPDFNKTFVLDVDASNDGLGAVLSQVHDDG-EHPIAYASRALTKPERRYCATRRELLALVWASKHFRPYLYGTRFKVRTDHNCLIWLNNFREP-EGQIARWLERLAEFDMEICHRPGKLHDNADALSRQTCGQCGKAVIPVAYAQAEPTQQQDQMNTA-------QNQDGDIKTLKEWIA-QDCWPSSCPEGVSRELRIFWGQRNALILDNGTLFRLWETPNSQRPLKLLVVPSHMRREILEELHDAPAGGHLGERRTLEKARCRFYWPGMAKDIKLWCRTCDACACRKGPSRRSRQPLQSIQTGYPFQRVGIDFLGPLPKTTTGKRYVLVVVDYFTKWTEAYATENMEAKTVAKVLVDNFITRFGPPESVHSDQGRSFEATLLAETFQLLGIKKTHTTSYHPQSNGLVERFNRTLLDTL-ALLSKRSPETWDEMLPWTTFAYNTSSHDTTGTSPFLALFGRE-------ARLPVDLRYDLPQREEPQTVTAYVS 959
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. TrEMBL
Match: A0A4Y2G706 (Transposon Ty3-I Gag-Pol polyprotein OS=Araneus ventricosus OX=182803 GN=TY3B-I_1264 PE=4 SV=1) HSP 1 Score: 531.561 bits (1368), Expect = 1.255e-161 Identity = 314/935 (33.58%), Postives = 499/935 (53.37%), Query Frame = 1 Query: 2026 TGNKRLLEIFQANKNVFMADKWDIGCTNLIKHKIITKGEP-IMIKPRRQPINLEDKIEEAIKNLENNGIIRKCNSPWNTPLVCVWKKEKKDIRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESICGKNNEKIRWTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEKGHEHVIAYGSHAMSSHEKGYCITRKELLAIYYFCKHFNHYLYGKRFVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLSRKTCG-TCVQCM-MEHEDAKTGKIKTRILTVTAEGGYNKWQNDNMEVQEIKNKLENK-------DCKFIMENNTVLTKQGKIW---------------------------IPSDNRQRMIKEVHVLLC--HAGAQKVTKYIQNNCDMENLATEVKKVIENCERCXXXXXXXXXXXXXXXXXXXXEPFEKIYMDICGPLKETFNKKKYICGIIDHYSKYISLTAINKQDERTISETLLNKWILKFGAPKELHVDCGKNFEARSIKELAKTAGIELIFSSPYHHNTNGIIERQFRTIREYINASLNEGGRKNWADIVPEIEYTLNATVQKTTGVSPAEIIFGRKI-----------DRMKWYSNKEINREDMEKRIEDKTLKPKISKTVRNFEMEDVVLIKQEIRNKDDA------------------------------RWEGPYKVIKKIHERSY-LLKDQNGKMVVRNVEKIKHFK 4587 T K LL+ FQ N+F D+G N+ +H+I T P I PRR P+ +++ E +K + +NGII + + PW +P+V V KK+ R C+D+R+LN+IT + ++P+P +D+ LD L+GS++FS++DL + Y+QV++ E +EKTAF+T +G + F MPFG+ APGTF+ LM VL+ L + +VYLDDI+I +T ++H N KV ++ A L+L+P+KC+ FRKEV +LGHII+ DG++TD K +A+ + +P+ V +LRSFLG+C YYRRF+++++ AR L + + WTE CEK+F +K+ALIT+PVL +P KEFILDTDAS + IGAVLSQK E VIAY S ++ E+ YC+TRKELLAI +HF+HYLYG++F+LRTDH ++ +++ ++P Q WI L D ++++RKGTSH NAD LSR+ C +C C E I ++LT ++ Q +E IK LE K + I + + +W +P Q +++E H H G K + + L +V+K C C K T+TK Q PFE++ +DI GPL T +Y+ ++D+++K+ I Q+ T++E L+ WI ++G P LH D G NF + EL K GI ++ H ++G++ER RTI +++ +++ + +W +P + + TG +PA+++FGR + N+ +N ++E R+E +V F E + L + ++ + D+ WEGPY ++KK+++ Y + + N K V ++ ++ ++ Sbjct: 228 TAVKELLQEFQ---NLFSTSDSDVGRCNMTQHRINTGNHPPIKQYPRRLPLAKKEEAERLVKEMVDNGIIEESSGPWASPIVLV-KKKDGSTRFCVDYRKLNEITIKDSYPLPRIDDTLDALNGSQWFSTLDLKSGYWQVEIQPEDKEKTAFTTGQGLWQFKVMPFGLCNAPGTFERLMETVLRGLTSEACLVYLDDIIIVGRTFQEHINNIRKVFQRLQKANLKLSPKKCRFFRKEVSYLGHIISADGVKTDPEKTKAVVDWPRPETVHDLRSFLGLCTYYRRFVRNFSAIARPLHKLT-EARSNFNWTEECEKSFNNLKQALITSPVLTYPRTDKEFILDTDASNEGIGAVLSQKI-GNEECVIAYFSKSLGKPERNYCVTRKELLAIVKSIEHFHHYLYGRKFLLRTDHASLRWLLNFREP-EGQIARWIQRLQEYDFEIQHRKGTSHGNADALSRRPCKESCKHCTNAEKRFGMETDISMKVLTTEDAWSSSEVQKAQLEDPAIKPILERKLNSEDRPSWQEIAPESPATKRYWALWDSLHLKDGVLYRKWESDDGSSGRWQLILPKSRIQEVLRETHESASGGHFGVMKTLSKTRERFYWDRLRADVEKWCRECHACGARKGPKTRTKGRLQRYNVGAPFERMALDILGPLPVTAKGNRYVLVLMDYFTKWPEAIPIPDQEASTVAEELVRAWISRYGVPMILHSDQGTNFNSALFTELCKLLGILKTRTTALHPESDGMVERFNRTILNHLSLFVSK-NQTDWDTHLPLFLLAYRSADDEATGCTPADMLFGRTLRLPCDILFGRPSDTPSSPNEYLN--NLEARLE----------SVHAFARERIKLASERMKTRYDSGATGHHFKEGDQVWMYNPKRWRGLSPKLQQNWEGPYTIVKKLNDVIYRVQRSPNAKPKVIHINRLTPYR 1142
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Cavefish
Match: ENSAMXT00000045469.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000976.1:426503:430633:1 gene:ENSAMXG00000030479.1 transcript:ENSAMXT00000045469.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 439.884 bits (1130), Expect = 7.989e-130 Identity = 262/826 (31.72%), Postives = 433/826 (52.42%), Query Frame = 1 Query: 2050 IFQANKNVFMADKWDIGCTNLIKHKI-ITKGEPIMIKPRRQPINLEDKIEEAIKNLENNGIIRKCNSPWNTPLVCVWKKEKKDIRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESICGK---NNEKIR----------WTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEKGHEHVIAYGSHAMSSHEK---GYCITRKELLAI-YYFCKHFNHYLYGKRFVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLSRKTC----------GTCVQCMMEHEDAKTGKIKTRILTVTAEGGYNK---------------------WQNDNME-VQEIKNKLEN-----KDCKFIMENNTVLTKQ----------GKIWIPSDNRQRMIKEVHVLLCHAGAQKVTKYIQNNCDMENLATEVKKVIENCERCXXXXXXXXXXXXXXXXXXXXEPFEKIYMDICGPLKETFNKKKYICGIIDHYSKYISLTAINKQDERTISETLLNKWILKFGAPKELHVDCGKNFEARSIKELAKTAGIELIFSSPYHHNTNGIIERQFRTIREYINASLNEGGRKNWADIVPEIEYTLNATVQKTTGVSPAEIIFGRK----IDRM 4320 + + ++N+F D+GCT L++H I + P+ + RR P + D ++ I+ L + ++R +SP+ +P+V V KK+ IRLC+D+RQLN T + AFP+P ++E LD L GS++FS++DL + Y QV + ++ +EKTAF T G F FNRMPFG+ AP TFQ LM ++ D +++YLDDI+IF+ + H VL ++ L+L EKC F+ V +LGH+I++ G++TD KI A+ +++P VK +RSFLG +YYRRF++ +A A L + G + ++ R W E+CE +F +K+ L+ APVL F DF + FI++ DAS +GAVLSQ+ E G IA+ S + E+ Y + ELLA+ + + F YL G +F + TD+ ++++ + K + A Q W + L+ + +++YR GTS+ NAD LSR G V + D +T +++ T + ++ W+ +E++N+ E + + I+E VL + ++ +P + ++ +H H G ++ T ++ C + ++KK CERC K + K + ++ +T P E + MD L+ N ++ + + D +SK+ A+ Q T+ L+ KW +G PK +H D G++FE +K L +T GIE ++PYH NG ER RT+ + + E RK W ++P + + N T+ ++T SP E++FG+K IDRM Sbjct: 324 LLRRHQNLFSEHAGDLGCTTLVQHSIPLLDSVPVRQRYRRLPPSQYDLVKAHIQELVEHQVVRPSSSPYASPIVVVQKKDG-SIRLCVDYRQLNAKTRKDAFPLPRIEESLDALSGSKWFSTLDLASGYNQVPVLEKDKEKTAFCTPFGLFEFNRMPFGLCNAPSTFQRLMERIFGDQSFHTLLLYLDDIVIFSSDLQQHLQRLDMVLSRLQQHNLKLKLEKCHFFQTRVSYLGHVISESGVETDPEKIRAVVDWKRPTTVKEVRSFLGFASYYRRFVEGFAALAAPLHKLVGALQGSKKQPRSKMHSIVIPHWDEVCETSFRALKDRLVRAPVLGFADFTRPFIVEIDASHTGLGAVLSQEQE-GKRRPIAFASRGLRPSERNMSNYSSMKLELLALKWAVTEKFREYLLGTQFTVYTDNNPLSYLQSAK--LAAVEQRWASQLALFNYELKYRPGTSNGNADALSRLPADTDQSSVGVRGISVPPEVPLADKETASRSQVVISSTVDAIPSRSSVDLQILQAADPLIAAFSVYWRRGQAPTARELRNEREGVKELVRQWQRIVERQGVLYRSVQLPPAKHTVFQLVLPKALQTEVLLALHDQHGHQGMERTTDLVRQRCYWPKMWQDIKKWCTECERCSIAKAMHPKVRTFMGSLLATRPLEILAMDFTV-LERASNGQENVLVLTDVFSKFTQAYAVADQKASTVVRVLVEKWFYVYGVPKRIHSDQGRSFEGELLKHLCETYGIEKSRTTPYHPEGNGQCERFNRTLHDLLRTLPPEKKRK-WPQLLPHLLFAYNTTIHQSTQYSPYELLFGQKPQLPIDRM 1143
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Cavefish
Match: ENSAMXT00000041345.1 (pep primary_assembly:Astyanax_mexicanus-2.0:25:32334536:32339002:1 gene:ENSAMXG00000029230.1 transcript:ENSAMXT00000041345.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 434.491 bits (1116), Expect = 3.279e-127 Identity = 312/1058 (29.49%), Postives = 529/1058 (50.00%), Query Frame = 1 Query: 1624 LDIQGRKVDCLLDTGARINVMAKSVIDRLENIEILETRESLR-----CANNSRLETMGKLNINVKMGSMERNVTFIIVKN--LIPEIIGGVELQRLFGIELK-----YILEEH-------EKRSDFICEIEARFGRIITDEERLRHAIDVLKVTGNKRLLE----IFQANKNVF-MADKWDIGCTN------LIKHKIITKGE-PIMIKPRRQPINLEDKIEEAIKNLENNGIIRKCNSPWNTPLVCVWKKEKKDIRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESICGKNNEKIRWTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEKGHEHVIAYGSHAMSSHEKGYCITRKELLAIYYFCKHFNHYLYGKRFVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLS----RKTCGTCVQCMMEHEDAKTGKIKTRILTVTAEGGYNKWQNDNMEVQEIKNK----LENKDCKFIMENNTVLTKQGKIWIPSDNRQRMIKEVH--VLLCHAGAQKVTKYIQNNCDMENLATEVKKVIENCERCXXXXXXXXXXXXXXXXXXXXEPFEKIYMDICGPLKETFNKKKYICGIIDHYSKYISLTAINKQDERTISETLLNKWILKFGAPKELHVDCGKNFEARSIKELAKTAGIELIFSSPYHHNTNGIIERQFRTIREYINASLNEGGRKNWADIVPEIEYTLNATVQKTTGVSPAEIIFGRK----IDRM-------KWYSNKEINR-EDMEKRIEDKTLKPKISKT--------VRNFEMEDVVLIKQEIRNKDD--------ARWEGPYKVIKKIHERSYLLK--DQNGKMVVRNVEKIKHF 4584 L ++G++V ++DTG+ +++ + DR++ + E S R AN G + ++ ++G + F +++N + ++ G++ G+ L YIL E S + R I E+ + +D + +L+E QA +++ + +W CTN ++ H I T PI KP + I + I+EAI++++ GI+R SPW +P+V V KKE +R C+D+R++N T A+PMP V EIL+ LHG+ FS++DL + Y+QV L+ +S KTAF T +G + F +PFGI A TFQ LM VL +L VY++DI++++ T E H +V + AGL LN KC + ++ + FLGH+I+ +GI T+ K+EAIQ+F +P+ +K L+ FLG+ +Y RFI ++++A L ++ KN I WT+ C+KAF ++K+ALITAPVL P+F + F + TDAS +GAVLSQ + G EHV+AY S + E+ Y KE LA+ + + + YL G+ F + TDH A++++ KP T++ W L + D ++YRKG + D LS R T G C + I G + Q D QE + + D F N L ++ +P +R+ ++ H L H G K + N ++ +V ++CE CQK K +K Q+ EP + +D+ GPL ++ + +++ I+D+ SK++ + + + I + L+ ++G P L D G F +R + + G+ ++ YH TN + ER RT++ I AS + + W +PE + +N+ Q++TG +PAE+ GRK ++R+ + K + R +D+ +I D K + + NF D+V ++ ++ D +W+GP K+I+KI +Y ++ D + ++ +VE +K++ Sbjct: 430 LSVRGQQVTAMIDTGSTFSLIQEGTWDRMKRTQ--EVWRSGRGQKFILANGQTQTAKGVVELDCELGKCQAKRPFYVMENKDHVFSLVLGLDFLHDTGLILDFQKDVYILPGGDTVPFGGEGESPPFSYADMRL--CIAQEDYV--PLDYEEEQEINKLVEGADITSQAKQDLHKLLSQWPSVCTNQLGRTMIVLHHITTNDNLPIRQKPYKVSIEKQQLIKEAIEDMQRRGIVRPSTSPWASPVVLVPKKEG-GVRFCVDYRRMNSKTHLDAYPMPQVQEILESLHGAAIFSTLDLKSGYWQVGLEPDSIPKTAFITCQGLYEFTVLPFGIKNAAATFQRLMDSVLVNLKGKSCFVYINDIVVYSSTIEQHLGHLEEVFRCLHQAGLTLNLRKCNLLQRSLIFLGHVISGEGICTEPGKVEAIQAFPEPRSIKELQRFLGMAGWYHRFITHFSERAAILNALKKKNAPWI-WTQECQKAFEDIKQALITAPVLTPPNFSEPFQIQTDASDQGLGAVLSQGTD-GLEHVVAYASRLLQGAERNYSTAEKECLAVVWAVEKWRVYLEGRHFTVITDHSALSWVFNHPKP-TSRLTRWAIRLQTFDFSVQYRKGKCNIVPDTLSRIPDRMTEGVMAPCQVTGSSDGLPVDWAEIARAQEVDGTLQPQRDETGNQETRKDRIHFVTKNDILFRAVPNQQLGHTLQVVVPVQHREAFLQYAHDNPLSGHLGQMKTLLRLLNIAYWPSIRRDVWTYCKSCEICQKYKPRISKLSGRLQSTPVVEPGYMLGVDLMGPLPKSPRQNEHLLVIVDYCSKWVEMFPLREAKTSQIVQILIKDIFTRWGTPAYLVSDRGAQFTSRLLHATCRQWGVVQKLTTAYHPQTN-LTERVNRTLKTMI-ASYVKDKHRLWDQWIPEFRFAINSAWQESTGFTPAEVALGRKLKGPLERLLSQPPNPDHDAYKVVQRQQDLFCQIRDNVDKAQAKQAKFYNRRRKQVNFVGGDLVWVETHPLSRADKGFAAKLAEKWKGPAKIIRKISPVNYEIEYLDDSSRVDTIHVENLKYY 1475
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Cavefish
Match: ENSAMXT00000041682.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02002320.1:24977:29035:1 gene:ENSAMXG00000038531.1 transcript:ENSAMXT00000041682.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 431.409 bits (1108), Expect = 5.899e-127 Identity = 261/810 (32.22%), Postives = 427/810 (52.72%), Query Frame = 1 Query: 2047 EIFQANKNVFMADKWDIGCTNLIKHKI-ITKGEPIMIKPRRQPINLEDKIEEAIKNLENNGIIRKCNSPWNTPLVCVWKKEKKDIRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESIC-----GKNNEKIR-----WTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEKGHEHVIAYGSHAMSSHEK---GYCITRKELLAI-YYFCKHFNHYLYGKRFVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLSRKTCGTCVQCMMEHEDA-----KTGKIKTRILTVTAE------------------GGY------NKWQNDNMEVQEIKNKLE-----NK--DCKFIMENNTVLTKQG-----KIWIPSDNRQRMIKEVHVLLCHAGAQKVTKYIQNNCDMENLATEVKKVIENCERCXXXXXXXXXXXXXXXXXXXXEPFEKIYMDICGPLKETFNKKKYICGIIDHYSKYISLTAINKQDERTISETLLNKWILKFGAPKELHVDCGKNFEARSIKELAKTAGIELIFSSPYHHNTNGIIERQFRTIREYINASLNEGGRKNWADIVPEIEYTLNATVQKTTGVSPAEIIFGRK 4308 ++ Q +VF D+ ++GCT+LI+H+I + P+ + RR P + D ++ I+ L + +IR SP+++P+V V K++ IRLC+D+RQLN T + A+P+P ++E LD L G+R+FS++DL + Y QV + + + KTAF T G F FNRMPFG+ AP TFQ LM ++ D +++YLDDI+IF+ T + H VL ++ L+L KC F+ +VK+LGH+I+ G+ TD KI+A+ +++P+ V LRSFLG +YYRRF++ +AK A L + GK K + W++ CE+AF +K L++APVL + DF K FIL+ DAS +GAVLSQ D++G IAY S + E+ Y + ELL + + + F YL G +F + TD+ ++++ T K + A Q W++ L+ + ++YR G S+ NAD LSR Q E + G K I T+ A G + K+ QE K LE NK +C ++ T T G ++ +P ++ ++ +H H GA++ ++ C ++ ++++ + C RC K K + + +++P E I +D + + ++ + I D +SK+ Q T++ L+ KW +G P+ +H D G+NFE+ +K L K ++ ++PYH NG ER RT+ + + +E R+ W +P++ + N TV +TT SP E++FGR+ Sbjct: 291 DLLQRYSSVFSQDEGELGCTHLIEHEIPLIDDTPVKQRYRRLPPSQYDLVKGHIQELLDRKVIRASCSPYSSPVVVVQKRDGT-IRLCVDYRQLNSKTRKDAYPLPRIEESLDALGGARFFSTLDLASGYNQVPMAEHDKSKTAFCTPFGLFEFNRMPFGLCNAPSTFQRLMERIFGDERFQSLLLYLDDIVIFSSTFDLHLQRLEVVLKRLQQNNLKLKLSKCHFFQSQVKYLGHVISSAGVATDPEKIKAVSEWERPQTVTQLRSFLGFASYYRRFVEGFAKHASPLHRLVAVLQGGKRRVKTKPVEGHWSDACEEAFETLKLKLVSAPVLGYADFSKPFILEIDASHGGLGAVLSQ-DQEGGRRPIAYASRGLRDSERNMSNYSSMKLELLGLKWAVTEKFREYLLGAQFTVYTDNNPLSYLQTAK--LGAVEQRWVSQLALFNFNIKYRPGLSNRNADALSRLPACPTPQSFQETVSGISIPLQVGATKATISTIDAVPLRPKADLQRLQSADPVIGPFLQYWHRQKFPTAGERAQESKEVLELVRQWNKLRECDGVLYRLT-RTPDGVEEFLQLVLPECLQKEVLTALHDNHGHQGAERTASLVRQRCFWPHMWKKIERWCKECSRCVVAKMGQPKIRTFMGNLSASKPLEIIAIDFTL-MDRASDGRENVLVITDVFSKFTQAFPTQDQRASTVAHILVEKWFYVYGVPQRIHSDQGRNFESDLLKSLCKIYDVKKSRTTPYHPQGNGQCERFNRTMHDLLRTLPSEQKRR-WPKYLPQLLFAYNTTVHQTTAHSPYELMFGRQ 1093
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Cavefish
Match: ENSAMXT00000054230.1 (pep primary_assembly:Astyanax_mexicanus-2.0:14:19483082:19487098:1 gene:ENSAMXG00000038338.1 transcript:ENSAMXT00000054230.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 427.172 bits (1097), Expect = 1.683e-125 Identity = 246/828 (29.71%), Postives = 435/828 (52.54%), Query Frame = 1 Query: 2005 AIDVLKVTGNKR--LLEIFQANKNVFMADKWDIGCTNLIKHKI-ITKGEPIMIKPRRQPINLEDKIEEAIKNLENNGIIRKCNSPWNTPLVCVWKKEKKDIRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALE----SICGKNNEK-------IRWTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEKGHEHVIAYGSHAMSSHEK---GYCITRKELLAI-YYFCKHFNHYLYGKRFVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLSRK----------TCGTCVQCMMEHEDAKTGKIKT--RILTVTAEGGYNKWQNDNMEVQEI--------------KNKLENKDCKFIMENNTVLTKQGKIW----------------IPSDNRQRMIKEVHVLLCHAGAQKVTKYIQNNCDMENLATEVKKVIENCERCXXXXXXXXXXXXXXXXXXXXEPFEKIYMDICGPLKETFNKKKYICGIIDHYSKYISLTAINKQDERTISETLLNKWILKFGAPKELHVDCGKNFEARSIKELAKTAGIELIFSSPYHHNTNGIIERQFRTIREYINASLNEGGRKNWADIVPEIEYTLNATVQKTTGVSPAEIIFGRK 4308 A+D+ +T ++ + + Q +VF A D+GCTNLI+H+I + P+ + RR P + + ++ I L ++R+ +SP+ +P+V V KK+ +R+C+D+R LN T + AFP+P ++E LD L G+R+FS++DL + Y QV + ++ + KTAF T G F +NRMPFG+ AP TFQ LM ++ D +++YLDDI++F+ + H VLG++ GL+ KC F++EV +LGH+I+ G+ TD KIEA+ +Q+P+ V LRSFLG +YYRRF++ +A+ A L ++ G +K + WT CE++F +K L++APVL + DF FIL+ DAS+ +GAVLSQ+ + G +AY S + E+ Y + E LA+ + + F YL G + V+ TD+ ++++ + K + A W L++ D +++YR G S+ NAD LSR+ GT V +++ + +L ++ + Q+ + ++E+ K ++ + + + ++ + G ++ +P+ + ++K++H H G ++ ++ ++ C + ++K+ CERCQ K + ++ P E + +D L+ + N + + + D +SKY Q T+++ LL +W KFG P +H D G++FE+ I++ G+E ++PYH NG ER RT+ + +L +++WA +P++ + N T + TG SP ++FG++ Sbjct: 250 AVDLSALTDQEQGVVRSLLQKYNSVFSAHDGDLGCTNLIEHEIPLLDNIPVRQRHRRIPPSDYELVKAHIDQLLEAQVVRESSSPYASPIVLV-KKKDGSLRMCVDYRLLNSKTRKDAFPLPRIEESLDALSGARWFSTLDLASGYNQVPVAEQDKPKTAFCTPFGLFEWNRMPFGLCNAPSTFQRLMQRMFGDQQYQSLLLYLDDIIVFSSSVSQHLQRLEVVLGRLQKEGLKAKLSKCVFFKQEVGYLGHVISNKGVSTDPAKIEAVAQWQRPRTVSELRSFLGFASYYRRFVEGFAQLAGPLHKLVAALVGSKTKKGSGQALGMAWTAQCEQSFEALKARLVSAPVLAYADFSLPFILEIDASYSGLGAVLSQEHD-GAVRPVAYASRGLRPPERNMDNYSSMKLEFLALKWAMTEKFREYLLGHKCVVYTDNNPLSYLQSAK--LGAMEHRWAAQLAAFDFEIKYRSGRSNKNADALSRQYQLGPSVTEYVPGTPVPELVQQASPVVSATQALVSVLPGSSPVDIHSLQDADPLLREVLVFWRKQVQPTSAEKRQVSRPAMALLRQWDRLVERDGVLYRRVFRPDGGEESFQLLLPAVLKPEVLKQLHQDHGHQGIERTSELVRQRCYWPGMFADIKQWCRECERCQVAKDAGPVPHSFMGHLLASRPNEIVAIDFTV-LEPSRNGLENVLVMTDVFSKYTIAVPTRDQRASTVAQVLLREWFYKFGVPGRIHSDQGRSFESALIQQFCHLYGVERSRTTPYHPAGNGQCERFNRTLHNLLR-TLPTSRKQDWASNLPQVIFCYNTTPHQGTGESPYYLMFGQE 1071
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Cavefish
Match: ENSAMXT00000034038.1 (pep primary_assembly:Astyanax_mexicanus-2.0:14:3120146:3124090:1 gene:ENSAMXG00000040885.1 transcript:ENSAMXT00000034038.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 424.476 bits (1090), Expect = 8.175e-125 Identity = 291/951 (30.60%), Postives = 456/951 (47.95%), Query Frame = 1 Query: 2062 NKNVFMADKWDIGCTNLIKHKI-ITKGEPIMIKPRRQPINLEDKIEEAIKNLENNGIIRKCNSPWNTPLVCVWKKEKKDIRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESICGKNNEKIR--------------WTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEKGHEHVIAYGSHAMSSHEKGYCITRKELLAI-YYFCKHFNHYLYGKRFVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLSR----------KTCGTCVQCMMEHEDAKTGKIKTRILTVT-AEGGYNKWQN------------DNMEVQEIK---------------------------------NKLENKDCKFIMENNTVLTK------QGKIW---IPSDNRQRMIKEVHVLLCHAGAQKVTKYIQNNCDMENLATEVKKVIENCERCXXXXXXXXXXXXXXXXXXXXEPFEKIYMDICGPLKETFNKKKYICGIIDHYSKYISLTAINKQDERTISETLLNKWILKFGAPKELHVDCGKNFEARSIKELAKTAGIELIFSSPYHHNTNGIIERQFRTIREYINASLNEGGRKNWADIVPEIEYTLNATVQKTTGVSPAEIIFGR--------------KIDRMKWYSNKEINREDMEKRIEDKTLKPKISK-----------TVRNFEMEDVVLIK---QEIRNKDDARWEG-PYKVIKKIHE-RSYLLKDQNGKMVVRNVEKIKH 4581 N +VF D G T ++KH+I + P + R+ P + + +AI +E G+IR SP+ +P+V V KK+ +R+C+D+R+LN + R AFP+P V+E L+ L ++YFS++DL + Y+QV++ + + KTAFST G F NRMPFG+ +P TFQ LMT DL + +++YLDDI+IF++T ++H V ++ GL+L P+KC + R+EV +LGH+++ DGI+TD KI + ++ P+ L FLG YYRRFI+ YA A L + + K + WTE CE AF +K L TAPVL + D+ + F+L TDAS +GAVL+Q + G E VIAY S ++ E Y + E LA+ + F +LYG +F + TD+ + +++TT K + A Q W+ LS D + YR+G + NAD LSR TC V + + + G R + T +E G NK + +M QEI+ KL K+ K ++ + +L + +G + +P R + +H H G ++ ++ + +VK E CERC KT T + +I + P E I +D ++++ + I + DH+S++ Q T+++ L + KFG P +LH D G+NFE+ +KEL + G + +SPYH NG ER RT+ + +L + W + + + + N T +TG +P ++FGR D + + + ++ E L + SK VR F D VLIK E R K RWE PY VIKK Y+++ ++G VE++ H Sbjct: 210 NSDVFSKHHLDYGHTTVVKHEIPLVDPRPFRLPYRKIPPSQYQAVRKAITEMEEAGVIRPSKSPYASPIVVVTKKDG-SLRICMDYRKLNSCSTRDAFPLPRVEEALEALGEAKYFSTLDLTSGYWQVEVAEADKHKTAFSTPMGLFEANRMPFGLQNSPSTFQRLMTCCFGDLNFESLLIYLDDIVIFSRTFDEHLERLQMVFDRLRKYGLKLKPQKCHLLRREVLYLGHVVSSDGIKTDPDKISKVAGWKVPENRHELLQFLGFAGYYRRFIEGYASIAAPLYRLTSGDPRKKKRGRKGPPAVGLPFIWTEECENAFQTLKTKLTTAPVLGYADYSQPFVLQTDASLAGLGAVLAQVQD-GRERVIAYASRGLNPAETRYPAHKLEFLALKWAVTDKFYDHLYGHKFSVLTDNNPLKYVMTTAK-LDATGQRWVAQLSMFDFDIRYRQGGCNANADGLSRMPASEVAEALHTCPQLVPTSSQKQSQEKGDSAERAVDGTSSESGSNKEPSADQFLSAGSDALPSMSKQEIRAAQRTDPVIGPVLYYKCQYAKPKRSARTQSNEQEKLLRKEWKKLVVKDDILFRHVRDRQRGSFYQLVLPEKFRGYVKSSLHDESGHFGVERTFALVRERFYWPRMFNDVKTWCEQCERCCLRKTPTAGLRAPLVSIHTNAPLELICIDFLT-VEKSKGGFENILVVTDHFSRWAQAYPTKDQKAETVAKVLWKNFFCKFGFPAKLHADQGRNFESTVVKELCRLTGTQKSHTSPYHPQGNGTTERFNRTLMNLM-GTLPPQSKARWHEYIDALTHAYNCTRHDSTGYTPYYLMFGRHPRLPIDLVFGLAPATDYCEHSDYAKTLHDSLKYACEQANLTSRHSKDTQKKHYDVKAKVRQFTPGDRVLIKVCHTETRQKLGDRWEPKPYLVIKKQPGIPVYVVRSEDG-----TVERVIH 1150
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000009777.1 (pep scaffold:Pmarinus_7.0:GL476990:135790:139231:-1 gene:ENSPMAG00000008837.1 transcript:ENSPMAT00000009777.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 53.9138 bits (128), Expect = 1.265e-7 Identity = 43/231 (18.61%), Postives = 103/231 (44.59%), Query Frame = 1 Query: 3628 DNRQRMIKEVHVLLCHAGAQKVTKYIQNNCDMENLATEVKKVIENCERCXXXXXXXXXXXXXXXXXXXXEPFEKIYMDICGPLKETFNKKKYICGIIDHYSKYISLTAINKQDERTISETLLNKWILKFGAPKELHVDCGKNFEARSIKELAK----TAGIELIFSSPYHHNTNGIIERQFRTIREYINASLNEGGRKNWADIVPEIEYTLNATVQKTTGVSPAEIIFGRK 4308 ++++ +++ VH H G + K ++ + + + +++ I CE C++ + S P+E + MD+ GP T +++ I+D+++K+ LT + Q + L +FG PK+L + + + A+ +E+ + +G+ + H NG + +R+ ++ + G ++W + + + + + T SP ++ GR+ Sbjct: 68 EDKRSILQRVHGA-DHCGQTRTRKLLEEHYYWKGMVNDIRDYINACEICKQKSYKRSSISHVKLLKASY-PWEVLGMDLLGPFPATSRAHRFVLLIVDYFTKWAELTPMTDQSAAHVVAALTTA-FHRFGFPKKLFCNVSEEYVAQINEEMFRHFPMCSGLAIS-----HLWANGAHRGTSQALRDCVSKA--TGRHRDWELQLEQRLFEYHTSKHSATRYSPFYLMLGRE 288
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000010393.1 (pep scaffold:Pmarinus_7.0:GL485791:8073:10868:-1 gene:ENSPMAG00000009411.1 transcript:ENSPMAT00000010393.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 49.6766 bits (117), Expect = 2.248e-7 Identity = 32/100 (32.00%), Postives = 46/100 (46.00%), Query Frame = 2 Query: 710 GGRTYRDVV----QVGATKREINEWKPETRVKVIECWTCQKPGHSSRECNIKRR-----FQCYACGVEGHIRRECPTI-------KCHRCNARGHKEREC 961 GG+++ D + G RE + C+ C K GH +REC R+ CY CG +GH+ REC + KC+ C RGH +R+C Sbjct: 2 GGKSFTDGCYRCGEGGHIARECPLPQDSVSSNTAACYNCGKGGHIARECPEGRQDRGGGPSCYTCGKQGHLARECSSGGGGPGDNKCYGCGQRGHMQRDC 101
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000004121.1 (pep scaffold:Pmarinus_7.0:GL477387:93825:107330:1 gene:ENSPMAG00000003764.1 transcript:ENSPMAT00000004121.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 49.6766 bits (117), Expect = 2.643e-6 Identity = 49/241 (20.33%), Postives = 102/241 (42.32%), Query Frame = 1 Query: 3628 DNRQRMIKEVHVLLCHAGAQKVTKYIQNNCDMENLATEVKKVIENCERCXXXXXXXXXXXXXXXXXXXXEPFEKIYMDICGPLKETFNKKKYICGIIDHYSKYI-SLTAINKQDERTISETLLNKWILKFGAPKELHVDCGKNFEARSIKELAKTAGIELIFS--SPYHHNTNGIIERQFRTIREYINASLNEGGR-----------KNWADIVPEIEYTLNATVQKTTGVSPAEIIFGRK 4308 D ++ ++ VH H G +K ++ + + ++VK +I +C C+ + S P+E + +D+ GPL T +Y+ +ID++SK+ ++ I K E S L ++G P+++ GK F + ++ K++ + + SP + + ++R +N + N+ + +W V + + TT SP ++FGR+ Sbjct: 76 DEKRNILMSVHGA-GHFGQKKTILKLEADYYWLGMISDVKNLIASCGVCRNKGSRRVAMPSMKLLKASG-PWEVLGLDVLGPLPVTSRANRYLLLLIDYFSKWAEAVPLIEKSQEHVASA--LTVVFCRYGFPRKVFSSLGKEF----VTQVNKSSTLSRAYQRCSPSQTQVHAHV-----SVRVALNKATNQALKGCVNLVASQHPSDWESRVEQSLFEYRVGKHSTTQYSPFYLMFGRE 303
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000004123.1 (pep scaffold:Pmarinus_7.0:GL477387:93825:107321:1 gene:ENSPMAG00000003764.1 transcript:ENSPMAT00000004123.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 48.1358 bits (113), Expect = 8.148e-6 Identity = 50/241 (20.75%), Postives = 101/241 (41.91%), Query Frame = 1 Query: 3628 DNRQRMIKEVHVLLCHAGAQKVTKYIQNNCDMENLATEVKKVIENCERCXXXXXXXXXXXXXXXXXXXXEPFEKIYMDICGPLKETFNKKKYICGIIDHYSKYI-SLTAINKQDERTISETLLNKWILKFGAPKELHVDCGKNFE-------------ARSIKELAKTAGIELIFSSPYHHNTNGIIERQFRTIREYINASLNEGGRKNWADIVPEIEYTLNATVQKTTGVSPAEIIFGRK 4308 D ++ ++ VH H G +K ++ + + ++VK +I +C C+ + S P+E + +D+ GPL T +Y+ +ID++SK+ ++ I K E S L ++G P+++ GK F + +++ L +T G + +H TN + ++ +N ++ +W V + + TT SP ++FGR+ Sbjct: 76 DEKRNILMSVHGA-GHFGQKKTILKLEADYYWLGMISDVKNLIASCGVCRNKGSRRVAMPSMKLLKASG-PWEVLGLDVLGPLPVTSRANRYLLLLIDYFSKWAEAVPLIEKSQEHVASA--LTVVFCRYGFPRKVFSSLGKEFVTQVNKIQHKKWCISHTLQNLCETRG-----PAGWHKATN-------QALKGCVNLVASQHP-SDWESRVEQSLFEYRVGKHSTTQYSPFYLMFGRE 299
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Yeast
Match: GIS2 (Translational activator for mRNAs with internal ribosome entry sites; associates with polysomes and binds to a specific subset of mRNAs; localizes to RNA processing bodies (P bodies) and to stress granules; may have a role in translation regulation under stress conditions; ortholog of human ZNF9/CNBP, a gene involved in myotonic dystrophy type 2 [Source:SGD;Acc:S000005199]) HSP 1 Score: 54.6842 bits (130), Expect = 5.569e-9 Identity = 26/56 (46.43%), Postives = 31/56 (55.36%), Query Frame = 2 Query: 803 CWTCQKPGHSSRECNIKRRF---QCYACGVEGHIRRECPTIKCHRCNARGHKEREC 961 C+ C KPGH +C + R QCY CG GH+R EC +C CN GH REC Sbjct: 25 CYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECTVQRCFNCNQTGHISREC 80 HSP 2 Score: 50.0618 bits (118), Expect = 2.821e-7 Identity = 26/79 (32.91%), Postives = 40/79 (50.63%), Query Frame = 2 Query: 737 QVGATKREINEWKPETRVKVIECWTCQKPGHSSREC---NIKRRFQCYACGVEGHIRRECPTIK-CHRCNARGHKEREC 961 Q G RE E K +R + C+ C P H +++C + +CY CG GH+ R+C + C+ CN GH ++C Sbjct: 72 QTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMKEDGISGLKCYTCGQAGHMSRDCQNDRLCYNCNETGHISKDC 150
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Nematostella
Match: EDO33875 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SR01]) HSP 1 Score: 53.5286 bits (127), Expect = 1.012e-8 Identity = 25/86 (29.07%), Postives = 52/86 (60.47%), Query Frame = 1 Query: 2608 DDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNY 2865 DD++ F + E+H ++L + +G + + +K Q + VKFLGH+I+++G++ K++ I+ ++ P + LR F+G+C + Sbjct: 1 DDVICFHSSFEEHLRGIERMLQAVRASGFK-SIKKSQFATRSVKFLGHVIDQNGVRPQPEKLD-IRQWETPTNEEELRKFIGVCTF 84
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Nematostella
Match: EDO33090 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7ST86]) HSP 1 Score: 53.9138 bits (128), Expect = 3.002e-7 Identity = 36/141 (25.53%), Postives = 65/141 (46.10%), Query Frame = 1 Query: 2437 QVKLDKESQEKTAFSTK-EGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYL-DDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLG 2853 ++ L ++S + +T G + R G+ + +ELM +VL DL +GV+V L DD+ T + ++ + + L + LRL+ K I K LG I + ++ ++ + P V +RSF+G Sbjct: 186 KIPLSRDSLKYCGVATPFRGVRVYTRCAMGMPGSETALEELMCRVLGDLLAEGVVVKLADDLYCGGNTPHELFSNWKRTLQALHECNLRLSASKTIINPKTTTILGWIWSAGTLKASPHRVATLAQCPTPTTVGLMRSFIG 326
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Nematostella
Match: EDO25785 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A8DVH4]) HSP 1 Score: 45.0542 bits (105), Expect = 5.458e-6 Identity = 24/65 (36.92%), Postives = 35/65 (53.85%), Query Frame = 2 Query: 770 WKPETRVKVIECWTCQKPGHSSREC-NIKRRFQCYACGVEGHIRRECPTIKCHRCNARGHKEREC 961 +K E R I C C + GH + +C + K+ +C CG +GH +R CP C C+ GH+ R C Sbjct: 4 YKEEKRSMYIRCHNCNERGHMAVDCPDPKKVIKCCLCGGQGHYKRSCPNELCFNCDQPGHQSRVC 68
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Nematostella
Match: EDO43256 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RZD2]) HSP 1 Score: 47.7506 bits (112), Expect = 6.389e-6 Identity = 25/75 (33.33%), Postives = 42/75 (56.00%), Query Frame = 1 Query: 2419 LGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEED 2643 + + Y+ KL + F+T G+F F RMPFGI+ A Q+++ + D+ +GV+ DDI++ KTE + Sbjct: 1 MSSCYWHKKLTDAASLLCTFNTPFGRFRFRRMPFGISCASEVAQKMVEEHFGDI--EGVLPVYDDIIVSGKTEAE 73
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Medaka
Match: ENSORLT00000036827.1 (pep primary_assembly:ASM223467v1:16:28613823:28617539:1 gene:ENSORLG00000023550.1 transcript:ENSORLT00000036827.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 461.455 bits (1186), Expect = 1.408e-138 Identity = 281/951 (29.55%), Postives = 491/951 (51.63%), Query Frame = 1 Query: 1972 RIITDEERLRHAIDVLKVTGNKRLLEIFQANKNVFMADKWDIGCTNLIKHKIIT-KGEPIMIKPRRQPINLEDKIEEAIKNLENNGIIRKCNSPWNTPLVCVWKKEKKDIRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESICGKNNEKIRWTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEKGHEHVIAYGSHAMSSHEKGYCITRKELLAIYYFCKHFNHYLYGKRFVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLSRKTC--GTCVQC---------MMEHEDAKTGKIKTRILTVTAEGGYNKW---QNDNMEVQEIKNKLE-------------NKDCKFIMEN-NTVLTKQG---KIW-------------IPSDNRQRMIKEVHVLL--CHAGAQKVTKYIQNNCDMENLATEVKKVIENCERCXXXXXXXXXXXXXXXXXXXXEPFEKIYMDICGPLKETFNKKKYICGIIDHYSKYISLTAINKQDERTISETLLNKWILKFGAPKELHVDCGKNFEARSIKELAKTAGIELIFSSPYHHNTNGIIERQFRTIREYINASLNEGGRKNWADIVPEIEYTLNATVQKTTGV------------SPAEIIFGRKIDRMKWYSNKEINREDMEK----------RIEDKTLKPKISKTVR----NFEMEDVVLIKQEIRNKD-----DARWEGPYKVIKKIHERSYLLK-DQNGKMVVRNVEKIKHFK 4587 R+ +E R + D L+ L ++ +++F + ++G T+L+ H+I T PI +PRR P+ + + AI+ + GII +SPW + +V V KK+ +R C+D+R LN +T++ ++P+P +DE LD++ GS +FSS+DL + Y+QV L ++ KTAF T G + F + FG+ AP TF+ LM KVL + + +VYLDDIL+ + + KVL +IA AGL+L+P+KC R+E++FLGH I +GI T K++A++ + P +++L+SFLG+ +YYRRF++ ++ A L + K+ + + WT+ CE+AF +K+AL +P+L PD + FILDTDAS +GAVLSQ G E V+AY S +S E+ YC+TR+ELLA+ HF +YL G F +RTDH A+ +++T K+P Q W+ L+S +E+R G+ H NAD +SR+ C C C + E + TG+ + + +W Q ++++Q + +E + K + E + + K G + W +P R +++ H H G K + I+ L +V+ C+ C K +++ E Q + + P E++ +DI GP T +++ +D+++K+ AI Q+ T+++ L+ +FGA + +H D G+NFE+ + + G+ ++P H ++G++ER RT+ + + A L + +W + +P + + VQ +T +PAE+ FG+ D + E R+ ++ ++E ++ K + +R +F+ D+V + R K D +W GP +V++K+ E Y ++ G+ V + +++ ++ Sbjct: 214 RVTAVKEIWRRSCDGLQPGQKDELWKVLLEYRDIFALSEDEVGLTHLVHHEIDTGDARPIKTRPRRLPLAHQVAADSAIEEMLRGGIIEPSDSPWASGVVMVKKKKGPKMRFCVDYRPLNGVTKKDSYPLPRIDESLDLVSGSSWFSSLDLRSGYWQVPLSPAARPKTAFCTGRGLWQFRVLSFGLCNAPATFERLMEKVLASIPRQECLVYLDDILVHGGSFKAALESLRKVLQRIAAAGLKLHPDKCCFMRRELEFLGHKIGGEGISTLEEKVQAVRDWPTPTTLRDLKSFLGLASYYRRFVRGFSCIAAPLFHLQRKDCDFV-WTQECEQAFSSLKKALTNSPILTPPDPKLPFILDTDASDVGMGAVLSQMGSAG-ERVVAYFSKTLSKAERRYCVTRRELLAVVKAIGHFRYYLCGLPFTVRTDHSALQWLMTFKEP-EGQIARWLEELASFSFTVEHRPGSRHANADAMSRRPCALAGCQYCEKREAREAVISREEQSHTGESSWPVCRLVQGVDSTEWRAHQEQDVDLQPVLQWVEAGRKPEWGEVAGCSPGSKGLFEKFDALRLKDGVLQRAWKEPATGEERWQVVVPRTLRNSVLQGCHGAAGSGHFGVSKTLRRIRQGFYWGQLRRDVEDFCRRCDICTAHKGPPDRSRAELQQLAAGAPMERVAVDIMGPFPRTNRGNRFVLVAMDYFTKWPEAYAIPDQEAVTVADALVEGMFSRFGAAEVIHSDQGRNFESAVFSAMCERLGMRKTRTTPLHPQSDGLVERFNRTLVKQL-AILTSAHQSDWDEHLPLVLMAYRSAVQDSTLCTPALLMLGRELRTPAEMSFGKPPDALGAPPGPEYARKLQDRMDTAHAFARNQLEKAGIRQKRNYDLRAKGKDFKAGDLVWVYNPKRKKGRCPKLDCQWVGPCEVLEKLGEVVYRVELPPGGRRVTLHRDRLAPYR 1160
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Medaka
Match: ENSORLT00000039099.1 (pep primary_assembly:ASM223467v1:16:31928608:31932747:-1 gene:ENSORLG00000023909.1 transcript:ENSORLT00000039099.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 434.876 bits (1117), Expect = 5.101e-128 Identity = 254/809 (31.40%), Postives = 422/809 (52.16%), Query Frame = 1 Query: 2068 NVFMADKWDIGCTNLIKHKI-ITKGEPIMIKPRRQPINLEDKIEEAIKNLENNGIIRKCNSPWNTPLVCVWKKEKKDIRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESICGK-NNEKIR----------WTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEKGHEHVIAYGSHAMSSHEK---GYCITRKELLAI-YYFCKHFNHYLYGKRFVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLSRK-----------TCGTCVQCMMEHEDAKTGKIKTRILTVTAEGGYNK-------------------WQNDNMEVQEIKNKLENKDCKFIMENNTVLTKQG----------------KIWIPSDNRQRMIKEVHVLLCHAGAQKVTKYIQNNCDMENLATEVKKVIENCERCXXXXXXXXXXXXXXXXXXXXEPFEKIYMDICGPLKETFNKKKYICGIIDHYSKYISLTAINKQDERTISETLLNKWILKFGAPKELHVDCGKNFEARSIKELAKTAGIELIFSSPYHHNTNGIIERQFRTIREYINASLNEGGRKNWADIVPEIEYTLNATVQKTTGVSPAEIIFGRK 4308 VF + D+GCT+LI H+I + P+ + RR P + +E I NL + +IR+ +SP+ +P+V + KK+ +RLC+D+RQLN T + AFP+P ++E LD L G+R+FS++DL + Y+QV + + + KTAF T G F +NRMPFG+ AP TFQ LM ++ + +++YLDDI++F+ T E H VL ++ GL++ KC F+ +V +LGH+I+ G+ TD K+EA+ +++ P V LRSF+G +YYRRF++ +AK A L + + K+R WTE C+++F +K L T PVL + DF + FIL+ DAS +GAVLSQ+ E G IAY S + E+ Y R E LA+ + + F YL G++ ++ TD+ ++++ T K + A Q W L++ D+++ YR G S+ NAD LSR+ G+C+ M + +T + T T+ A ++ W+ E + +L + + + N ++ + G +I +P R+ ++ VH H G + ++ C ++ EV + CERCQ K + + +++P E + MD L+ T + + + I D +SKY A Q T+++ L+ +W KFG P +H D G++FE+ I++L +E ++PYH NG ER RT+ + + +L +++W +P++ Y+ N T +TG SP ++FG++ Sbjct: 321 TVFSLHEGDLGCTSLITHEIPLVDDAPVRQRYRRIPPSDYVAAKEHINNLLQSQVIRESSSPFASPIVLIRKKDG-GLRLCVDYRQLNSRTRKDAFPLPRIEESLDALSGARWFSTLDLASGYHQVAVAEADRPKTAFCTPFGLFEWNRMPFGLCNAPSTFQRLMQRMFGEQQGQSLLLYLDDIIVFSSTIEQHLERLELVLERLQLEGLKVKLAKCAFFQHQVHYLGHVISDQGVSTDPGKVEAVANWEPPTTVFQLRSFIGFASYYRRFVEGFAKLAAPLHRLVAELEGNKVRKKSARGLTNHWTEECQRSFEALKAKLTTTPVLAYADFSRPFILEVDASNGGLGAVLSQEQE-GKVRPIAYASRGLRPTERNPVNYSSMRLEFLALKWAVAEKFREYLLGQKCIVYTDNNPLSYLSTAK--LGAMEQRWAAQLAAFDLEIRYRSGRSNRNADALSRQHFPDMQAWRDVLPGSCLP-MSLQQVQQTETVGTTQATMVALPHHSPSDMASLQGADPVLKEFLPFWERQTRPSPEERRQLSSPTLALLRQWNRLVEQGGVLYRRVFRDDGGEAVLQILLPGSIREEVLTAVHQQHGHQGVDRTLDLLRQRCYWPGMSAEVAEWCSQCERCQVAKVTRPAARAPMGHLLASKPNEILAMDFSV-LEPTTSGIENVLVITDIFSKYTMAVATRDQRAATVAQVLVTEWFSKFGVPARIHSDQGRSFESALIQQLCDLYAVEKSRTTPYHPEGNGQCERFNRTLHDLLR-TLPVSRKRDWNVCLPQLLYSYNTTPHHSTGESPFFLMFGQE 1122
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Medaka
Match: ENSORLT00000029819.1 (pep primary_assembly:ASM223467v1:24:6358775:6362914:-1 gene:ENSORLG00000022361.1 transcript:ENSORLT00000029819.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 434.876 bits (1117), Expect = 5.792e-128 Identity = 254/809 (31.40%), Postives = 422/809 (52.16%), Query Frame = 1 Query: 2068 NVFMADKWDIGCTNLIKHKI-ITKGEPIMIKPRRQPINLEDKIEEAIKNLENNGIIRKCNSPWNTPLVCVWKKEKKDIRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESICGK-NNEKIR----------WTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEKGHEHVIAYGSHAMSSHEK---GYCITRKELLAI-YYFCKHFNHYLYGKRFVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLSRK-----------TCGTCVQCMMEHEDAKTGKIKTRILTVTAEGGYNK-------------------WQNDNMEVQEIKNKLENKDCKFIMENNTVLTKQG----------------KIWIPSDNRQRMIKEVHVLLCHAGAQKVTKYIQNNCDMENLATEVKKVIENCERCXXXXXXXXXXXXXXXXXXXXEPFEKIYMDICGPLKETFNKKKYICGIIDHYSKYISLTAINKQDERTISETLLNKWILKFGAPKELHVDCGKNFEARSIKELAKTAGIELIFSSPYHHNTNGIIERQFRTIREYINASLNEGGRKNWADIVPEIEYTLNATVQKTTGVSPAEIIFGRK 4308 VF + D+GCT+LI H+I + P+ + RR P + +E I NL + +IR+ +SP+ +P+V + KK+ +RLC+D+RQLN T + AFP+P ++E LD L G+R+FS++DL + Y+QV + + + KTAF T G F +NRMPFG+ AP TFQ LM ++ + +++YLDDI++F+ T E H VL ++ GL++ KC F+ +V +LGH+I+ G+ TD K+EA+ +++ P V LRSF+G +YYRRF++ +AK A L + + K+R WTE C+++F +K L T PVL + DF + FIL+ DAS +GAVLSQ+ E G IAY S + E+ Y R E LA+ + + F YL G++ ++ TD+ ++++ T K + A Q W L++ D+++ YR G S+ NAD LSR+ G+C+ M + +T + T T+ A ++ W+ E + +L + + + N ++ + G +I +P R+ ++ VH H G + ++ C ++ EV + CERCQ K + + +++P E + MD L+ T + + + I D +SKY A Q T+++ L+ +W KFG P +H D G++FE+ I++L +E ++PYH NG ER RT+ + + +L +++W +P++ Y+ N T +TG SP ++FG++ Sbjct: 321 TVFSLHEGDLGCTSLITHEIPLVDDAPVRQRYRRIPPSDYVAAKEHINNLLQSQVIRESSSPFASPIVLIRKKDG-GLRLCVDYRQLNSRTRKDAFPLPRIEESLDALSGARWFSTLDLASGYHQVAVAEADRPKTAFCTPFGLFEWNRMPFGLCNAPSTFQRLMQRMFGEQQGQSLLLYLDDIIVFSSTIEQHLERLELVLERLQLEGLKVKLAKCAFFQHQVHYLGHVISDQGVSTDPGKVEAVANWEPPTTVFQLRSFIGFASYYRRFVEGFAKLAAPLHRLVAELEGNKVRKKSARGLTNHWTEECQRSFEALKAKLTTTPVLAYADFSRPFILEVDASNGGLGAVLSQEQE-GKVRPIAYASRGLRPTERNPVNYSSMRLEFLALKWAVAEKFREYLLGQKCIVYTDNNPLSYLSTAK--LGAMEQRWAAQLAAFDLEIRYRSGRSNRNADALSRQHFPDMQAWRDVLPGSCLP-MSLQQVQQTETVGTTQATMVALPHHSPSDMASLQGADPVLKEFLPFWERQTRPSPEERRQLSSPTLALLRQWNRLVEQGGVLYRRVFRDDGGEAVLQILLPGSIREEVLTAVHQQHGHQGVDRTLDLLRQRCYWPGMSAEVAEWCSQCERCQVAKVTRPAARAPMGHLLASKPNEILAMDFSV-LEPTTSGIENVLVITDIFSKYTMAVATRDQRAATVAQVLVTEWFSKFGVPARIHSDQGRSFESALIQQLCDLYAVEKSRTTPYHPEGNGQCERFNRTLHDLLR-TLPVSRKRDWNVCLPQLLYSYNTTPHHSTGESPFFLMFGQE 1122
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Medaka
Match: ENSORLT00000040501.1 (pep primary_assembly:ASM223467v1:1:1251188:1255180:-1 gene:ENSORLG00000023024.1 transcript:ENSORLT00000040501.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 426.017 bits (1094), Expect = 3.085e-125 Identity = 274/906 (30.24%), Postives = 468/906 (51.66%), Query Frame = 1 Query: 2035 KRLLEIFQANKNVFMADKWDIGCTNLIKHKIITKGEPIMIKP-RRQPINLEDKIEEAIKNLENNGIIRKCNSPWNTPLVCVWKKEKKDIRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESIC---------GKNNEKIR---WTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEKGHEHVIAYGSHAMSSHEK---GYCITRKELLAI-YYFCKHFNHYLYGKRFVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLSRKTCGTCVQCMMEHEDAKTGKIKTRILTVTAE----------------------GGYNK-WQNDNMEVQEIKNKLEN------KDCKFIMENNTVLTK----------QGKIWIPSDNRQRMIKEVHVLLCHAGAQKVTKYIQNNCDMENLATEVKKVIENCERCXXXXXXXXXXXXXXXXXXXXEPFEKIYMDICGPLKETFNKKKYICGIIDHYSKYISLTAINKQDERTISETLLNKWILKFGAPKELHVDCGKNFEARSIKELAKTAGIELIFSSPYHHNTNGIIERQFRTIREYINASLNEGGRKNWADIVPEIEYTLNATVQKTTGVSPAEIIFGRK----IDRM------------KWY----SNKEINREDMEKRIED----KTLKPKISKTVRNFEMEDVVLIKQE---IRNKDDARWEG-PYKVI 4500 +R+ + VF D D+GCTNL+ H+I E + +P RR P + + I+ L + +IR+ +SP+ +P+V V KK+ +R+C+D+RQLN T + AFP P +DE LD L G+++F+++DL + Y QV++ ++ + KTAF T G F FNRMPFG+ AP TFQ LM ++ D V++YLDD++IF+ + E H +V ++ GL++ KC F+K+VK+LGH+++ +G+ TD K ++ +++P + +LRSFLG +YYRRFI +AK A L S+ GK +K W CE++F E+K ALITAPVL + DF+K F+L+ DAS +GAVLSQ+ E G +A+ S ++ E+ Y + EL+A+ + + F YL G + TD+ ++ + T K + A Q W + L++ D+ ++YR G+ + NAD LSR+ ++E A+ + + R+L V AE G + K W+ M ++ L + K + E+ +VL + ++ +P ++ ++ +H H G ++ + I++ N+ ++V+K CERC K + K K ++K++ P E + +D L + ++ + + D +SKY Q T++E L+ W FG P +H D G+NFE+ + L K I+ ++PYH NG ER RT+ + + +L ++ W + ++ + N TV ++TG++P ++FGR+ +D + +W S+ + E +++R+E+ + LK + +FE D V + RNK W+ PY+++ Sbjct: 303 ERVKALLSKYNRVFAKDDLDVGCTNLMTHEIPLLDETPVRQPYRRIPPSQYELARSHIQQLLQSQVIRESSSPYASPIVLVQKKDG-GLRMCVDYRQLNARTRKDAFPSPRIDESLDALAGAQWFTTLDLASGYSQVEVAEKDKAKTAFCTPFGLFEFNRMPFGLCNAPSTFQRLMERLFGDCRFQSVLLYLDDVIIFSSSVEQHLQRLEQVFSRLDAQGLKVKLSKCHFFQKQVKYLGHVVSAEGVSTDPEKAAVVRDWRRPANLADLRSFLGFASYYRRFIAGFAKIASPLNSLVARLLPPGRKGKTPKKPVDEFWDAECEESFQELKTALITAPVLAYADFQKPFVLEVDASHGGLGAVLSQEHE-GKRRPVAFASRSLKPTERNMNNYSSMKLELVALKWAVTEKFREYLLGNACTVFTDNNPLSHLATAK--LGATEQRWASELAAFDLTIKYRPGSQNANADALSRQ------HPVLELSGARPLETE-RVLGVQAEMSTLPGLSPSDLYTLQRQDPVLGPFIKYWERGKMPDARERHGLSKPVRELIRQWKRLREHESVLYRCIYGSDGHGETNQLVLPQSLQESILHSLHDDHGHQGTERTLQLIRSRYYWPNMYSDVEKWCRTCERCVLSKALQPKVKTYMGSVKASRPHEILAIDFTV-LDPATDGRENVLVMTDVFSKYTQTVPTKDQRASTVAEALVKHWFQLFGPPARIHSDQGRNFESNLVHRLCKFYQIDKSRTTPYHPQGNGQCERFNRTLHDLLR-TLPPEQKRRWPRHLSQVTFAYNTTVHQSTGMTPYFLMFGREPRLPVDFLLGSDTEHDVPLDEWLEEHQSSLAVAYEAVQRRMENVRAQRDLKMQDQCLAPDFEEGDFVYTRNHGARGRNKIQDFWDPTPYQIV 1195
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Medaka
Match: ENSORLT00000045600.1 (pep primary_assembly:ASM223467v1:4:26167161:26171153:-1 gene:ENSORLG00000023514.1 transcript:ENSORLT00000045600.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 423.32 bits (1087), Expect = 2.696e-124 Identity = 273/906 (30.13%), Postives = 468/906 (51.66%), Query Frame = 1 Query: 2035 KRLLEIFQANKNVFMADKWDIGCTNLIKHKIITKGEPIMIKP-RRQPINLEDKIEEAIKNLENNGIIRKCNSPWNTPLVCVWKKEKKDIRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESIC---------GKNNEKIR---WTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEKGHEHVIAYGSHAMSSHEK---GYCITRKELLAI-YYFCKHFNHYLYGKRFVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLSRKTCGTCVQCMMEHEDAKTGKIKTRILTVTAE----------------------GGYNK-WQNDNMEVQEIKNKLEN------KDCKFIMENNTVLTK----------QGKIWIPSDNRQRMIKEVHVLLCHAGAQKVTKYIQNNCDMENLATEVKKVIENCERCXXXXXXXXXXXXXXXXXXXXEPFEKIYMDICGPLKETFNKKKYICGIIDHYSKYISLTAINKQDERTISETLLNKWILKFGAPKELHVDCGKNFEARSIKELAKTAGIELIFSSPYHHNTNGIIERQFRTIREYINASLNEGGRKNWADIVPEIEYTLNATVQKTTGVSPAEIIFGRK----IDRM------------KWY----SNKEINREDMEKRIED----KTLKPKISKTVRNFEMEDVVLIKQE---IRNKDDARWEG-PYKVI 4500 +R+ + VF D D+GCTNL+ H+I E + +P RR P + + I+ L + +IR+ +SP+ +P+V V KK+ +R+C+D+RQLN T + AFP+P +DE LD L G+++F+++DL + Y QV++ ++ + KTAF T G F FNRMPFG+ AP TFQ LM ++ D V++YLDD++IF+ + E H +V ++ GL++ KC F+K+VK+LGH+++ +G+ TD K ++ +++P + +LRSFLG +YYRRFI +AK A L S+ GK +K W CEK+F E+K ALITAPVL + +F+K F+L+ DAS +GAVLSQ+ E G +A+ S ++ E+ Y + EL+A+ + + F YL G + TD+ ++ + T K + A Q W + L++ D+ ++YR G+ + NAD LSR+ ++E A+ + + R+L V AE G + K W+ M ++ L + K + E+ +VL + ++ +P ++ ++ +H H G ++ + I++ N+ ++V+K CERC K + K K ++K++ P E + +D L + ++ + + D +SKY Q T++E L+ W FG P +H D G NFE+ + +L K I+ ++PYH NG ER T+ + + +L ++ W + ++ + N TV ++TG++P ++FGR+ +D + +W S+ + E +++R+E+ + LK + +FE D V + RNK W+ PY+++ Sbjct: 303 ERVKALLSKYNRVFAKDDLDVGCTNLMTHEIPLLDETPVRQPYRRIPPSQYELAHSHIQQLLQSQVIRESSSPYASPIVLVQKKDG-GLRMCVDYRQLNARTRKDAFPLPRIDESLDALAGAQWFTTLDLASGYSQVEVAEKDKAKTAFCTPFGLFEFNRMPFGLCNAPSTFQRLMERLFGDCRFQSVLLYLDDVIIFSSSVEQHLQRLEQVFSRLEAQGLKVKLSKCHFFQKQVKYLGHVVSAEGVSTDPEKAAVVRDWRRPANLADLRSFLGFASYYRRFIAGFAKIASPLNSLVARLLPPGRKGKTPKKPVDEFWDAECEKSFQELKTALITAPVLAYANFQKPFVLEVDASHGGLGAVLSQEHE-GRRRPVAFASRSLKPTERNMNNYSSMKLELVALKWAVTEKFREYLLGNACTVFTDNNPLSHLATAK--LGATEQRWASELAAFDLTIKYRPGSQNANADALSRQ------HPVLELSGARPLETE-RVLGVQAEMSTLPGLSPSDLYTLQQQDPVLGPFIKYWERGKMPDARERHGLSKPVRELIRQWKRLREHESVLYRYIYGSDGHGETNQLVLPQSLQESILHSLHDDHGHQGTERTLQLIRSRYYWPNMYSDVEKWCRTCERCVLSKALQPKVKTYMGSVKASRPHEILAIDFTV-LDPATDGRENVLVMTDVFSKYTQTVPTKDQRASTVAEALVKHWFQLFGPPARIHSDQGWNFESNLVHQLCKFYQIDKSRTTPYHPQGNGQCERFNLTLHDLLR-TLPPEQKRRWPRHLSQVTFAYNTTVHQSTGMTPYFLMFGREPRLPVDFLLGSDTEHDVPLDEWLEEHQSSLAVAYEAVQRRMENVRAQRDLKMQDQCLAPDFEEGDFVYTRNHGARGRNKIQDFWDPTPYQIV 1195
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Planmine SMEST
Match: SMESG000029259.1 (SMESG000029259.1) HSP 1 Score: 2218.74 bits (5748), Expect = 0.000e+0 Identity = 1093/1096 (99.73%), Postives = 1094/1096 (99.82%), Query Frame = 1 Query: 1309 MDDDCMIDKDCSVFERDINNNSSVEIKKSNDKESQKKFKEECKVNEVVKHEERTIEKIYKFLKKNGDVCINEIVEDTREQNILSVEEQKSPVITYNIMQGRPSTTLDIQGRKVDCLLDTGARINVMAKSVIDRLENIEILETRESLRCANNSRLETMGKLNINVKMGSMERNVTFIIVKNLIPEIIGGVELQRLFGIELKYILEEHEKRSDFICEIEARFGRIITDEERLRHAIDVLKVTGNKRLLEIFQANKNVFMADKWDIGCTNLIKHKIITKGEPIMIKPRRQPINLEDKIEEAIKNLENNGIIRKCNSPWNTPLVCVWKKEKKDIRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESICGKNNEKIRWTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEKGHEHVIAYGSHAMSSHEKGYCITRKELLAIYYFCKHFNHYLYGKRFVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLSRKTCGTCVQCMMEHEDAKTGKIKTRILTVTAEGGYNKWQNDNMEVQEIKNKLENKDCKFIMENNTVLTKQGKIWIPSDNRQRMIKEVHVLLCHAGAQKVTKYIQNNCDMENLATEVKKVIENCERCXXXXXXXXXXXXXXXXXXXXEPFEKIYMDICGPLKETFNKKKYICGIIDHYSKYISLTAINKQDERTISETLLNKWILKFGAPKELHVDCGKNFEARSIKELAKTAGIELIFSSPYHHNTNGIIERQFRTIREYINASLNEGGRKNWADIVPEIEYTLNATVQKTTGVSPAEIIFGRKIDRMKWYSNKEINREDMEKRIEDKTLKPKISKTVRNFEMEDVVLIKQEIRNKDDARWEGPYKVIKKIHERSYLLKDQNGKMVVRNVEKIKHFKKGG 4596 MDDDCMIDKDCSVFERDINNNSSVEIKKSNDKESQKKFKEECKVNEVVKHEERTIEKIYKFLKKNGDVCINEIVEDTREQNILSVEEQKSP ITYNIMQGRPSTTLDIQGRKVDCLLDTGARINVMAKSVIDRLENIEILETRESLRCANNSRLETMGKLNINVKMGSMERNVTFIIVKNLIPEIIGGVELQRLFGIELK ILEEHEKRSDFICEIEARFGRIITDEERLRHAIDVLKVTGNKRLLEIFQANKNVFMADKWDIGCTNLIKHKIITKGEPIMIKPRRQPINLEDKIEEAIKNLENNGIIRKCNSPWNTPLVCVWKKEKKDIRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESICGKNNEKIRWTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEKGHEHVIAYGSHAMSSHEKGYCITRKELLAIYYFCKHFNHYLYGKRFVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLSRKTCGTCVQCMMEHEDAKTGKIKTRILTVTAEGGYNKWQNDNMEVQEIKNKLENKDCKFIMENNTVLTKQGKIWIPSDNRQRMIKEVHVLLCHAGAQKVTKYIQNNCDMENLATEVKKVIENCERCQKMKTITTKTKEETQTIKSTEPFEKIYMDICGPLKETFNKKKYICGIIDHYSKYISLTAINKQDERTISETLLNKWILKFGAPKELHVDCGKNFEARSIKELAKTAGIELIFSSPYHHNTNGIIERQFRTIREYINASLNEGGRKNWADIVPEI+YTLNATVQKTTGVSPAEIIFGRKIDRMKWYSNKEINREDMEKRIEDKTLKPKISKTVRNFEMEDVVLIKQEIRNKDDARWEGPYKVIKKIHERSYLLKDQNGKMVVRNVEKIKHFKKGG Sbjct: 2449 MDDDCMIDKDCSVFERDINNNSSVEIKKSNDKESQKKFKEECKVNEVVKHEERTIEKIYKFLKKNGDVCINEIVEDTREQNILSVEEQKSPAITYNIMQGRPSTTLDIQGRKVDCLLDTGARINVMAKSVIDRLENIEILETRESLRCANNSRLETMGKLNINVKMGSMERNVTFIIVKNLIPEIIGGVELQRLFGIELKCILEEHEKRSDFICEIEARFGRIITDEERLRHAIDVLKVTGNKRLLEIFQANKNVFMADKWDIGCTNLIKHKIITKGEPIMIKPRRQPINLEDKIEEAIKNLENNGIIRKCNSPWNTPLVCVWKKEKKDIRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESICGKNNEKIRWTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEKGHEHVIAYGSHAMSSHEKGYCITRKELLAIYYFCKHFNHYLYGKRFVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLSRKTCGTCVQCMMEHEDAKTGKIKTRILTVTAEGGYNKWQNDNMEVQEIKNKLENKDCKFIMENNTVLTKQGKIWIPSDNRQRMIKEVHVLLCHAGAQKVTKYIQNNCDMENLATEVKKVIENCERCQKMKTITTKTKEETQTIKSTEPFEKIYMDICGPLKETFNKKKYICGIIDHYSKYISLTAINKQDERTISETLLNKWILKFGAPKELHVDCGKNFEARSIKELAKTAGIELIFSSPYHHNTNGIIERQFRTIREYINASLNEGGRKNWADIVPEIKYTLNATVQKTTGVSPAEIIFGRKIDRMKWYSNKEINREDMEKRIEDKTLKPKISKTVRNFEMEDVVLIKQEIRNKDDARWEGPYKVIKKIHERSYLLKDQNGKMVVRNVEKIKHFKKGG 3544 HSP 2 Score: 561.607 bits (1446), Expect = 1.537e-166 Identity = 298/340 (87.65%), Postives = 299/340 (87.94%), Query Frame = 2 Query: 161 ASNMATIPTDLLIGRLLPEKFHRGDDLELFIKECQRFFEITKTPVKTQMVLVITLLDRTLIEEYEAAEGKTVEQKLRAAFHRPTSLIDDLREALNYEQGNDSAEIFIEKISKMTKKLASHTWNEEEIQKCLLTHCVRDKEVRKEIEMKDLXXXXXXXXXXXXXXXXXXXXXXVNTVRSIRPTTGGRTYRDVVQVGATKREINEWKPETRVKVIECWTCQKPGHSSRECNIKRRFQCYACGVEGHIRRECPTIKCHRCNARGHKERECYTNMERRNQGRDRDQRKMSGGRIQRNTYQQREDMYQPRNVHQRQWGNQQYNRKDIAAIESDDEMMNTKQSSQP 1180 ASNMATIPTDLLIGRLLPEKFHRGDDLELFIKECQRFFEITKTPVKTQMVLVITLLDRTLIEEYEAAEGKTVEQKLRAAFHRPTSLIDDLREALNYEQ EVRKEIEMKDLKTAEQIKETIKKIEKVNKVIEQVNTVRSIRPTTGGRTYRDVVQVGATKREINEWKPETRVK+IECWTCQKPGHSSRECNIKRRFQCYACGVEGHIRRECPTIKCHRCNARGHKERECYTNMERRNQGRDRDQRKMSGGRIQRNTYQQREDMYQPRNVHQRQWGNQQYNRKDIAAIESDDEMMNTKQSSQP Sbjct: 2148 ASNMATIPTDLLIGRLLPEKFHRGDDLELFIKECQRFFEITKTPVKTQMVLVITLLDRTLIEEYEAAEGKTVEQKLRAAFHRPTSLIDDLREALNYEQ-----------------------------------------EVRKEIEMKDLKTAEQIKETIKKIEKVNKVIEQVNTVRSIRPTTGGRTYRDVVQVGATKREINEWKPETRVKMIECWTCQKPGHSSRECNIKRRFQCYACGVEGHIRRECPTIKCHRCNARGHKERECYTNMERRNQGRDRDQRKMSGGRIQRNTYQQREDMYQPRNVHQRQWGNQQYNRKDIAAIESDDEMMNTKQSSQP 2446
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Planmine SMEST
Match: SMESG000081257.1 (SMESG000081257.1) HSP 1 Score: 578.556 bits (1490), Expect = 0.000e+0 Identity = 337/870 (38.74%), Postives = 495/870 (56.90%), Query Frame = 1 Query: 1609 RPSTTLDIQGRKVDCLLDTGARINVMAKSVIDRLENIEILETRESL-RCANNSRLETMGKLNINVKMGSMERNVTFIIVKNLIPEIIGGVELQRLFGIELKYILEEHEKRSDFICEIEARFGRIITDEERLRHAIDVLKVTGNKRLLEIFQANKNVFMADKWDIGCTNLIKHKIITKGEPIMIKPRRQPINLEDKIEEAIKNLENNGIIRKCNSPWNTPLVCVWKKEKKDIRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESICGKNNEKIRWTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEKGHEHVIAYGSHAMSSHEKGYCITRKELLAIYYFCKHFNHYLYGKRFVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLSRKTCGTCVQCMMEHEDAKTGKIKTRILTVTAEGGYN------KWQNDNMEVQEIKNKLENKDCKF-----------------IMENNTVLTKQGK--IWIPSDNRQRMIKEVHVLLCHAGAQKVTKYIQNNCDMENLATEVKKVIENCERCXXXXXXXXXXXXXXXXXXXXEPFEKIYMDICGPLKETFNKKKYICGIIDHYSKYISLTAINKQDERTISETLLNKWILKFGAPKELHVDCGKNFEARSIKELAKTAGIELIFSSPYHHNTNG 4140 R + ++I G V+ L ++GA I+VM++ + + ++++R L +N + +G + I K R + IIV+ + P IGGV+ ++FG+ELK E + S + RF TD +RL++ + LK+ N L + N+FMA ++D+G T +I H++ T G PI+ PR QP++LE K+EE ++NL G++RKC SPWNTPLV V K + +R+CLDFR LN +TE+ +FPMP++ +LD L S+ F SIDLG AYY V+L++ SQ KTAFSTKEGQFCFNR+PFG++ AP TFQ+LM ++L+ L GV+VYLDDILI+ + +E H + +V +I +GL++NPEKC + + F+GH +++ GIQT+ KI I++ +PK LRSFLG+ YYRRFIK+Y+ A L + ++ I WTE C K F +K+ L AP+L +P + FI+DTD SF+ IG ++ HE GYC+TRKELL ++ F HF YLYG+RFV RTDHKA+TFM TTKKPI+ QFQTW+ S D ++YRKG H NA SR C MEH+DAK K +TR + + +G N + QN++ +I + L + I +N ++ GK + +P + ++ H+ LCH G K Y+++ + ++ + + I C+ C K +TKE E+I +DI ET KKY+ IID +SK +SL QDE TI +LN WI +FG P+ + D + FE ++ + GI+ FSSPY H +NG Sbjct: 283 RKWSIMEINGFHVEMLWNSGASISVMSEKCWRLIGSPILMDSRILLSEVFSNEDKKPLGSVKIVAKWNKKFRELNVIIVRKIHPNFIGGVDTMKIFGMELK---EVNNIESSLV---NKRF----TDSDRLKNTLLTLKLDKNSELGTLISQFSNIFMASRFDLGHTKVITHELKTSGPPILQNPRGQPMHLEAKVEELVQNLLEAGVVRKCQSPWNTPLVIVGKPDG-SVRICLDFRLLNSVTEKFSFPMPDMQLLLDCLGKSKIFYSIDLGQAYYLVELNENSQIKTAFSTKEGQFCFNRLPFGLSTAPATFQKLMHQILEGLVFKGVVVYLDDILIYGENQETHDKLLFEVFTRIRDSGLKVNPEKCAFNKSVLNFIGHTVSEKGIQTNKRKISEIENATEPKSTTELRSFLGLTTYYRRFIKNYSMIAAPLYAATTGCDKMIVWTEECRKRFINLKKLLCEAPILEYPRADRLFIIDTDDSFEAIG--------------------HLTKHEIGYCVTRKELLVLHEFIVHFRQYLYGRRFVARTDHKALTFMNTTKKPISPQFQTWMANFSEYDFALQYRKGNEHGNAGGWSRLNNTICSHYQMEHKDAKKAKCRTRCIN-SLQGSSNIMKIIKQKQNEDKVTSQIISHLNGNEAHISYKTISSSIFKYLKILQIQDNVLMINTDGKLAVVVPDSYVKSLVNYFHIELCHLGINKTLFYLKDFFFLPSMNQIITECINKCKICASRKIDQGRTKEILLPRTGERFLEQIVVDI--DYMETKESKKYMIVIIDCFSKLVSLP----QDEATILNVILNNWIYRFGRPESILTDRERIFEGSMFRDWMEKFGIKQEFSSPYQHQSNG 1114
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Planmine SMEST
Match: SMESG000016546.1 (SMESG000016546.1) HSP 1 Score: 529.635 bits (1363), Expect = 4.109e-172 Identity = 266/462 (57.58%), Postives = 327/462 (70.78%), Query Frame = 1 Query: 1945 ICEIEARFGRIITDEERLRHAIDVLKVTGNKRLLEIFQANKNVFMADKWDIGCTNLIKHKIITKGEPIMIKPRRQPINLEDKIEEAIKNLENNGIIRKCNSPWNTPLVCVWKKEKKDIRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESICGKNNEKIRWTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEKGHEHVIAYGSHAMSSHEKGYCITRKELLAIYYFCKHFNHYLYGKRFVLRTDHKAITFMVTTKKPITAQFQTWINYL 3330 +C I+A+FG++IT ER A LKV L EI + N+NVFMA+KW+IGCT L+KHKI+T+G I IKPRRQPI+LE KIEEAI+NL NGII+ LN +T+RQA+PM N+ EILD G ++F+SIDLGNAYYQV+L+++S+EKTAFST GQ+CFNRMPFGIA PGT QELM KVL ++ +G +VYL+DILIFT T+E +Y + V+ +I + EAI+SFQKP+C+KNL+SF GICNYYRRFIKDYAKK R LE +CGK N K+ W E CEKAF +MK+AL +PVL +PDF ++FI+DTD+SFDTIG VLSQKD G+E VIAYGSHAMS+HEKGYCI RKELLAIYYFC+HFNH+LYGKRF LRTD KAITFM++TKKPITAQF+TWIN+L Sbjct: 113 MCNIDAKFGKLITGTERFDRARKELKVNYT-VLAEIIKNNQNVFMANKWEIGCTALLKHKIVTRGSLINIKPRRQPIHLEPKIEEAIQNLFKNGIIK----------------------------NLNLVTDRQAYPMQNIAEILDRFEGEKHFNSIDLGNAYYQVELEEKSKEKTAFSTTTGQYCFNRMPFGIATGPGTSQELMRKVLGNI--NGTVVYLNDILIFTATKEQYYAVLNDVIERIG-----------------------------------RPEAIKSFQKPECIKNLKSFPGICNYYRRFIKDYAKKTRTLEELCGKYNVKLIWAENCEKAFEDMKKALTESPVLGYPDFTRDFIIDTDSSFDTIGDVLSQKDNNGYEKVIAYGSHAMSTHEKGYCIKRKELLAIYYFCQHFNHHLYGKRFTLRTDLKAITFMLSTKKPITAQFKTWINHL 508
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Planmine SMEST
Match: SMESG000038955.1 (SMESG000038955.1) HSP 1 Score: 429.098 bits (1102), Expect = 1.210e-129 Identity = 223/509 (43.81%), Postives = 310/509 (60.90%), Query Frame = 1 Query: 1978 ITDEERLRHAIDVLKVTGNKRLLEIFQANKNVFMADKWDIGCTNLIKHKIITKGEPIMIKPRRQPINLEDKIEEAIKNLENNGIIRKCNSPWNTPLVCVWKKEKKDIRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESICGKNNEKIRWTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEKGHEHVIAYGSHAMSSHEKGYCITRKELLAIYYFCKHFNHYLYGKRFVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLSRKTCGTCVQCMMEHEDAKTGKIKTRILTVTAEGGYN 3504 TD +RL+ + LK+ N +L + N+FMA ++D+G T +I H+I +++P++LE K+EE ++NL G++RK SPWNTPLV V K + IR+CLDFR LN +TE+ +F P++ +LD L S+ FSSIDLG AYYQV+L++ SQ KTAFSTKEGQFCFNR+PFG++ AP TFQ+LM ++L+ L GV+VYLD+ILI+ + +E H + +V +I +GL++NPEKC + + F+GH +Y+ A + N++ I WTE C +F +K+ L AP+L +P + F++DTDASF IGAVLSQ E E VIAYGS ++ HE G+C+T KELLA++ F HF YLYG+RFV RTDHKA+TFM TTKKPI+ QFQTW+ LS D ++YRKG H NAD SR C C+ME++DAK K +TR + + +G N Sbjct: 97 FTDSDRLKITLSTLKLDKNSKLGTLISKFSNIFMASRFDLGHTKVITHEI-----------KKKPMHLEGKVEELVQNLLEAGVVRKSISPWNTPLVIVGKLDG-SIRMCLDFRLLNSVTEKFSFYSPDMKLLLDCLGNSKIFSSIDLGQAYYQVELNENSQIKTAFSTKEGQFCFNRLPFGLSTAPATFQKLMHQILEGLVFKGVVVYLDEILIYGENQEIHDKLLFEVFTRIRDSGLKVNPEKCAFNKSVLNFIGHT-------------------------------------------NYSIIAAPMYVATTGNDKMIVWTEECRNSFINLKKLLCEAPILEYPRADRLFVIDTDASFGAIGAVLSQIKEDCTEVVIAYGSRHLTKHEMGHCVTIKELLALHEFIVHFRQYLYGRRFVARTDHKALTFMNTTKKPISPQFQTWMANLSEHDFALQYRKGEEHGNADGKSRLNNTKCSHCLMENKDAKEAKCRTRYIN-SLQGSSN 549 HSP 2 Score: 89.3521 bits (220), Expect = 1.690e-17 Identity = 52/162 (32.10%), Postives = 91/162 (56.17%), Query Frame = 1 Query: 4018 APKELHVDCGKNFEARSIKELAKTAGIELIFSSPYHHNTNGIIERQFRTIREYINASLNE-GGRKNWADIVPEIEYTLNATVQKTTGVSPAEIIFGRKIDRMKWYSNKEINREDMEKRIEDKTLKPKISKTVRNFEMEDVVLIKQEIRNKDDARWEGPYKVI 4500 +P+ + D G FE ++ + GI+ FSSPY H +N + ER RT+R+ + SL E + NW ++P IE++ NAT+Q +T SP EI++GRKI+ + + RE++E E KT K + T++N +++++ + R + + PY+ + Sbjct: 615 SPESILTDRGIIFEGSMFRDWMEKFGIKQEFSSPYQHQSNILAERIIRTVRDMLATSLAEIKTKNNWCRLLPRIEFSFNATIQNSTKFSPFEIVYGRKINLYSGVEHIQKFREEIED--ETKTNLVKAATTMQNRDIDNLGTRSLKNRAYQEGIKQTPYEAL 774
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Planmine SMEST
Match: SMESG000035021.1 (SMESG000035021.1) HSP 1 Score: 372.474 bits (955), Expect = 1.298e-114 Identity = 220/569 (38.66%), Postives = 314/569 (55.18%), Query Frame = 1 Query: 1606 GRPSTTLDIQGRKVDCLLDTGARINVMAKSVIDRLENIEILETRESLRCANNSRLETMGKLNINVKMGSMERNVTFIIVKNLIPEIIGGVELQRLFGIELKYILEEHEKRSDFICEIEARFGRIITDEERLRHAIDVLKVTGNKRLLEIFQANKNVFMADKWDIGCTNLIKHKIITKGEPIMIKPRRQPINLEDKIEEAIKNLENNGIIRKCNSPWNTPLVCVWKKEKKDIRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESICGKNNEKIRWTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEKGHEHVIAYGSHAMSSHEKGYCITRKELLAIYYFCKHFNHYLYGKRFVLRTDHKAITFMVTTKKPITAQFQ 3312 GR + + + G V+ L D+GA I+V+++ + + ++++R L E + I K R + IIV+ + P+ IGGV+ ++FG+ELK E + + RF TD E L+ + LK N +L + N+FMA ++D G +I H+I T PI+ RRQ ++LE K+EE ++NL G++RK SPWNTPLV V K + D + SR+ AYYQV+L++ SQ KTAFSTKEGQ CFNR+P G++ AP TFQ+ + + LK L G ++YLDDILI+ + +E + + +V +I +GL+ NPEKC + + F+GH +++ GIQT+ KI I++ +PK LRSFLG+ N+Y+RFIK+Y+ A L + TAP+L +P + FI+DTD SF IGAVLSQ E G E VIAYGS ++ HE YC+TRKEL A++ F HF YLYGKRFV R DHKA+TFM TTKKPI++QF Sbjct: 5 GRKWSMMRLNGFHVEMLWDSGASISVISEKCWRLIGSPILMDSRIRLSGVFPKEDEKLLGSKIVAKWNKKFRKLNVIIVRKIYPDFIGGVDTIKIFGMELK------EVNNIESLLVNKRF----TDSELLKITLLTLKFDKNTKLGTLIFQFSNIFMASRFDFGHIKVIAHEIKTSDSPILQNSRRQLMHLEGKVEELVQNLLEAGVLRKSQSPWNTPLVIVGKPD-------------------------------DSKNVSRF-------QAYYQVELNENSQIKTAFSTKEGQLCFNRLPIGLSTAPATFQKHINQTLKGLVFKGEVLYLDDILIYAENQETYDKLLFEVFIRIRDSGLKANPEKCAFNKSVLNFIGHTVSEKGIQTNKRKISEIENATEPKSTTELRSFLGLTNFYQRFIKNYSMIAEPLYTAT-------------------------TAPILEYPRADRLFIIDTDDSFGAIGAVLSQIKEDGTEGVIAYGSRHLTEHEMEYCMTRKELFALHEFIVHFRQYLYGKRFVARMDHKALTFMNTTKKPISSQFH 500 The following BLAST results are available for this feature:
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 4
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 1
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 4
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30006762 ID=SMED30006762|Name=Transposon Ty3-I Gag-Pol polyprotein|organism=Schmidtea mediterranea sexual|type=transcript|length=4786bpback to top protein sequence of SMED30006762-orf-1 >SMED30006762-orf-1 ID=SMED30006762-orf-1|Name=SMED30006762-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=373bp MTEELNVIASNMATIPTDLLIGRLLPEKFHRGDDLELFIKECQRFFEITKback to top protein sequence of SMED30006762-orf-2 >SMED30006762-orf-2 ID=SMED30006762-orf-2|Name=SMED30006762-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1115bp MNANGMCNLSMDDDCMIDKDCSVFERDINNNSSVEIKKSNDKESQKKFKEback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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