GCR138

Overview
NameGCR138
Smed IDSMED30006584
Length (bp)2004
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of GCR138 (SMED30006584) t-SNE clustered cells

Violin plots show distribution of expression levels for GCR138 (SMED30006584) in cells (dots) of each of the 12 neoblast clusters.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30006584

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
testisSMED30006584h1SMcG0012748 GCR138smed_ncbi_20240424PMID:27163480
Saberi et al., 2016
whole organism adult hermaphrodite colorimetric in situ hybridization evidence
Note: Hover over icons to view figure legend
Homology
BLAST of GCR138 vs. TrEMBL
Match: A0A193KUQ0 (GCR138 OS=Schmidtea mediterranea OX=79327 GN=gcr138 PE=2 SV=1)

HSP 1 Score: 1224.92 bits (3168), Expect = 0.000e+0
Identity = 642/642 (100.00%), Postives = 642/642 (100.00%), Query Frame = 1
Query:    1 MKWIFFIISLIHLFANSVKGNETNNIVYIFDIGFCSLEFLGFQGKIRIPLLDIQIFYDRLLDKFICTVENRVYHDQLNIISFGNSNSFLCQHRSGPMKIEKLFIINYATVLCNGNYSKXXXXXXXXXXXXXXXRIESFSGFNLPIINMIINITKSYKLISTMYSDQFLSSILSALDDLKDFEATQFDSYDHLNVEVHQMKGNSKIVTIFDQSLYIRLVENMPVVFHTLLVPNVTKDVSYLLISIRNSSQPILFEVIIKRKSSDEIIECDIWYKKGKDPSEIECLVTNVADQWVSCQCNRTGVLIIKKSDFISMSQRDKFNFDLFPPNLTGVPRTINYEFRSLIEDVYRYERVTNMLNLAVMVLAMFNXXXXXXXXXYYRIHWPSVSYSNRQYVVXXXXXXXXXXXXPAFVMRIIRTFVLLPAPNTEYLATGLIMIHSAFAYTLMLGGIQIVLFVFVTNLRIWTYRFFDTFHCLIIACCIGIPFPIMFFSFVTIIVSIHKINFIPIAYGTFTFVIAPSLLVLIISFILTGISIFFPGRGGGTVVMLATYPLIILQLVNFYHVMKVKNIFAFEHEKLFYHTCGMFIQVTYQSLWFIIMVILPVKNITLFGKRDAPFRHEYIYLIRFQNQKEFVIPSSSSASWDI 1926
            MKWIFFIISLIHLFANSVKGNETNNIVYIFDIGFCSLEFLGFQGKIRIPLLDIQIFYDRLLDKFICTVENRVYHDQLNIISFGNSNSFLCQHRSGPMKIEKLFIINYATVLCNGNYSKNIVTNTTNLLFTTINRIESFSGFNLPIINMIINITKSYKLISTMYSDQFLSSILSALDDLKDFEATQFDSYDHLNVEVHQMKGNSKIVTIFDQSLYIRLVENMPVVFHTLLVPNVTKDVSYLLISIRNSSQPILFEVIIKRKSSDEIIECDIWYKKGKDPSEIECLVTNVADQWVSCQCNRTGVLIIKKSDFISMSQRDKFNFDLFPPNLTGVPRTINYEFRSLIEDVYRYERVTNMLNLAVMVLAMFNIILILIMMLYYRIHWPSVSYSNRQYVVLLLLLWLNFLILPAFVMRIIRTFVLLPAPNTEYLATGLIMIHSAFAYTLMLGGIQIVLFVFVTNLRIWTYRFFDTFHCLIIACCIGIPFPIMFFSFVTIIVSIHKINFIPIAYGTFTFVIAPSLLVLIISFILTGISIFFPGRGGGTVVMLATYPLIILQLVNFYHVMKVKNIFAFEHEKLFYHTCGMFIQVTYQSLWFIIMVILPVKNITLFGKRDAPFRHEYIYLIRFQNQKEFVIPSSSSASWDI
Sbjct:    1 MKWIFFIISLIHLFANSVKGNETNNIVYIFDIGFCSLEFLGFQGKIRIPLLDIQIFYDRLLDKFICTVENRVYHDQLNIISFGNSNSFLCQHRSGPMKIEKLFIINYATVLCNGNYSKNIVTNTTNLLFTTINRIESFSGFNLPIINMIINITKSYKLISTMYSDQFLSSILSALDDLKDFEATQFDSYDHLNVEVHQMKGNSKIVTIFDQSLYIRLVENMPVVFHTLLVPNVTKDVSYLLISIRNSSQPILFEVIIKRKSSDEIIECDIWYKKGKDPSEIECLVTNVADQWVSCQCNRTGVLIIKKSDFISMSQRDKFNFDLFPPNLTGVPRTINYEFRSLIEDVYRYERVTNMLNLAVMVLAMFNIILILIMMLYYRIHWPSVSYSNRQYVVLLLLLWLNFLILPAFVMRIIRTFVLLPAPNTEYLATGLIMIHSAFAYTLMLGGIQIVLFVFVTNLRIWTYRFFDTFHCLIIACCIGIPFPIMFFSFVTIIVSIHKINFIPIAYGTFTFVIAPSLLVLIISFILTGISIFFPGRGGGTVVMLATYPLIILQLVNFYHVMKVKNIFAFEHEKLFYHTCGMFIQVTYQSLWFIIMVILPVKNITLFGKRDAPFRHEYIYLIRFQNQKEFVIPSSSSASWDI 642          
BLAST of GCR138 vs. Planmine SMEST
Match: SMESG000080214.1 (SMESG000080214.1)

HSP 1 Score: 896.345 bits (2315), Expect = 0.000e+0
Identity = 479/480 (99.79%), Postives = 479/480 (99.79%), Query Frame = 1
Query:    1 MKWIFFIISLIHLFANSVKGNETNNIVYIFDIGFCSLEFLGFQGKIRIPLLDIQIFYDRLLDKFICTVENRVYHDQLNIISFGNSNSFLCQHRSGPMKIEKLFIINYATVLCNGNYSKXXXXXXXXXXXXXXXRIESFSGFNLPIINMIINITKSYKLISTMYSDQFLSSILSALDDLKDFEATQFDSYDHLNVEVHQMKGNSKIVTIFDQSLYIRLVENMPVVFHTLLVPNVTKDVSYLLISIRNSSQPILFEVIIKRKSSDEIIECDIWYKKGKDPSEIECLVTNVADQWVSCQCNRTGVLIIKKSDFISMSQRDKFNFDLFPPNLTGVPRTINYEFRSLIEDVYRYERVTNMLNLAVMVLAMFNXXXXXXXXXYYRIHWPSVSYSNRQYVVXXXXXXXXXXXXPAFVMRIIRTFVLLPAPNTEYLATGLIMIHSAFAYTLMLGGIQIVLFVFVTNLRIWTYRFFDTFHCLIIACCIG 1440
            MKWIFFIISLIHLFANSVKGNETNNIVYIFDIGFCSLEFLGFQGKIRIPLLDIQIFYDRLLDKFICTVENRVYHDQLNIISFGNSNSFLCQHRSGPMKIEKLFIINYATVLCNGNYSKNIVTNTTNLLFTTINRIESFSGFNLPIINMIINITKSYKLISTMYSDQFLSSILSALDDLKDFEATQFDSYDHLNVEVHQMKGNSKIVTIFDQSLYIRLVENMPVVFHTLLVPNVTKDVSYLLISIRNSSQPILFEVIIKRKSSDEIIECDIWYKKGKDPSEIECLVTNVADQWVSCQCNRTGVLIIKKSDFISMSQRDKFNFDLFPPNLTGVPRTINYEFRSLIEDVYRYERVTNMLNLAVMVLAMFNIILILIMMLYYRIHWPSVSYSNRQYVVLLLLLWLNFLILPAFVMRIIRTFVLLPAPNTEYLATGLIMIHSAFAYTLMLGGIQIVLFVFVTNLRIWTY FFDTFHCLIIACCIG
Sbjct:    1 MKWIFFIISLIHLFANSVKGNETNNIVYIFDIGFCSLEFLGFQGKIRIPLLDIQIFYDRLLDKFICTVENRVYHDQLNIISFGNSNSFLCQHRSGPMKIEKLFIINYATVLCNGNYSKNIVTNTTNLLFTTINRIESFSGFNLPIINMIINITKSYKLISTMYSDQFLSSILSALDDLKDFEATQFDSYDHLNVEVHQMKGNSKIVTIFDQSLYIRLVENMPVVFHTLLVPNVTKDVSYLLISIRNSSQPILFEVIIKRKSSDEIIECDIWYKKGKDPSEIECLVTNVADQWVSCQCNRTGVLIIKKSDFISMSQRDKFNFDLFPPNLTGVPRTINYEFRSLIEDVYRYERVTNMLNLAVMVLAMFNIILILIMMLYYRIHWPSVSYSNRQYVVLLLLLWLNFLILPAFVMRIIRTFVLLPAPNTEYLATGLIMIHSAFAYTLMLGGIQIVLFVFVTNLRIWTYMFFDTFHCLIIACCIG 480          
BLAST of GCR138 vs. Planmine SMEST
Match: SMESG000080214.1 (SMESG000080214.1)

HSP 1 Score: 739.569 bits (1908), Expect = 0.000e+0
Identity = 390/392 (99.49%), Postives = 391/392 (99.74%), Query Frame = 1
Query:    1 MKWIFFIISLIHLFANSVKGNETNNIVYIFDIGFCSLEFLGFQGKIRIPLLDIQIFYDRLLDKFICTVENRVYHDQLNIISFGNSNSFLCQHRSGPMKIEKLFIINYATVLCNGNYSKXXXXXXXXXXXXXXXRIESFSGFNLPIINMIINITKSYKLISTMYSDQFLSSILSALDDLKDFEATQFDSYDHLNVEVHQMKGNSKIVTIFDQSLYIRLVENMPVVFHTLLVPNVTKDVSYLLISIRNSSQPILFEVIIKRKSSDEIIECDIWYKKGKDPSEIECLVTNVADQWVSCQCNRTGVLIIKKSDFISMSQRDKFNFDLFPPNLTGVPRTINYEFRSLIEDVYRYERVTNMLNLAVMVLAMFNXXXXXXXXXYYRIHWPSVSYSNRQY 1176
            MKWIFFIISLIHLFANSVKGNETNNIVYIFDIGFCSLEFLGFQGKIRIPLLDIQIFYDRLLDKFICTVENRVYHDQLNIISFGNSNSFLCQHRSGPMKIEKLFIINYATVLCNGNYSKNIVTNTTNLLFTTINRIESFSGFNLPIINMIINITKSYKLISTMYSDQFLSSILSALDDLKDFEATQFDSYDHLNVEVHQMKGNSKIVTIFDQSLYIRLVENMPVVFHTLLVPNVTKDVSYLLISIRNSSQPILFEVIIKRKSSDEIIECDIWYKKGKDPSEIECLVTNVADQWVSCQCNRTGVLIIKKSDFISMSQRDKFNFDLFPPNLTGVPRTINYEFRSLIEDVYRYERVTNMLNLAVMVLAMFNIILILIMMLYYRIHWPSVSYSN +Y
Sbjct:    1 MKWIFFIISLIHLFANSVKGNETNNIVYIFDIGFCSLEFLGFQGKIRIPLLDIQIFYDRLLDKFICTVENRVYHDQLNIISFGNSNSFLCQHRSGPMKIEKLFIINYATVLCNGNYSKNIVTNTTNLLFTTINRIESFSGFNLPIINMIINITKSYKLISTMYSDQFLSSILSALDDLKDFEATQFDSYDHLNVEVHQMKGNSKIVTIFDQSLYIRLVENMPVVFHTLLVPNVTKDVSYLLISIRNSSQPILFEVIIKRKSSDEIIECDIWYKKGKDPSEIECLVTNVADQWVSCQCNRTGVLIIKKSDFISMSQRDKFNFDLFPPNLTGVPRTINYEFRSLIEDVYRYERVTNMLNLAVMVLAMFNIILILIMMLYYRIHWPSVSYSNIRY 392          
BLAST of GCR138 vs. Planmine SMEST
Match: SMESG000080228.1 (SMESG000080228.1)

HSP 1 Score: 315.464 bits (807), Expect = 8.437e-105
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1
Query: 1456 MFFSFVTIIVSIHKINFIPIAYGTFTFVIAPSLLVLIISFILTGISIFFPGRGGGTVVMLATYPLIILQLVNFYHVMKVKNIFAFEHEKLFYHTCGMFIQVTYQSLWFIIMVILPVKNITLFGKRDAPFRHEYIYLIRFQNQKEFVIPSSSSASWDI 1926
            MFFSFVTIIVSIHKINFIPIAYGTFTFVIAPSLLVLIISFILTGISIFFPGRGGGTVVMLATYPLIILQLVNFYHVMKVKNIFAFEHEKLFYHTCGMFIQVTYQSLWFIIMVILPVKNITLFGKRDAPFRHEYIYLIRFQNQKEFVIPSSSSASWDI
Sbjct:    1 MFFSFVTIIVSIHKINFIPIAYGTFTFVIAPSLLVLIISFILTGISIFFPGRGGGTVVMLATYPLIILQLVNFYHVMKVKNIFAFEHEKLFYHTCGMFIQVTYQSLWFIIMVILPVKNITLFGKRDAPFRHEYIYLIRFQNQKEFVIPSSSSASWDI 157          
The following BLAST results are available for this feature:
BLAST of GCR138 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of GCR138 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of GCR138 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of GCR138 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of GCR138 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of GCR138 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of GCR138 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of GCR138 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A193KUQ00.000e+0100.00GCR138 OS=Schmidtea mediterranea OX=79327 GN=gcr13... [more]
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BLAST of GCR138 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of GCR138 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of GCR138 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of GCR138 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of GCR138 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of GCR138 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000080214.10.000e+099.79SMESG000080214.1[more]
SMESG000080214.10.000e+099.49SMESG000080214.1[more]
SMESG000080228.18.437e-105100.00SMESG000080228.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30006584 ID=SMED30006584|Name=GCR138|organism=Schmidtea mediterranea sexual|type=transcript|length=2004bp
ATGAAATGGATATTTTTTATTATTTCTCTGATTCATTTATTTGCCAACTC
TGTGAAAGGAAATGAAACAAATAATATTGTGTATATTTTTGATATTGGAT
TTTGCTCGTTGGAATTTCTTGGTTTCCAAGGAAAGATTAGAATACCGTTG
TTGGATATTCAGATATTCTATGATAGGCTGCTGGATAAATTCATCTGCAC
TGTAGAAAACAGAGTTTATCATGACCAATTAAACATTATATCCTTTGGAA
ATTCCAATTCCTTTCTTTGTCAACATAGAAGCGGTCCAATGAAAATAGAG
AAATTGTTTATAATTAATTATGCGACCGTTTTGTGTAACGGGAATTATTC
CAAGAATATAGTTACTAATACAACTAATTTACTGTTCACAACAATAAATA
GGATAGAATCATTCTCCGGTTTTAATCTCCCAATAATAAATATGATTATA
AATATAACGAAGAGTTATAAATTGATAAGTACAATGTATAGTGATCAGTT
TCTTTCAAGTATTTTAAGTGCTCTTGATGATTTGAAAGACTTCGAGGCAA
CCCAATTTGATAGTTACGACCATTTGAATGTTGAGGTCCATCAAATGAAA
GGCAACAGCAAAATAGTTACGATTTTCGACCAAAGTTTGTACATAAGGCT
TGTGGAAAACATGCCCGTCGTCTTCCATACTCTGTTAGTTCCCAACGTCA
CAAAGGATGTTTCCTATTTATTGATATCTATCCGTAACAGTTCACAGCCA
ATTCTCTTTGAAGTAATAATCAAAAGGAAGTCATCGGATGAAATAATTGA
ATGCGATATATGGTATAAGAAAGGAAAAGACCCTAGTGAAATCGAATGTC
TGGTCACCAATGTGGCCGATCAGTGGGTAAGTTGTCAATGCAACAGAACT
GGAGTTTTGATAATCAAAAAAAGCGATTTCATTTCAATGTCGCAGCGAGA
TAAATTTAATTTTGATTTGTTTCCTCCAAATCTAACCGGGGTCCCCAGAA
CGATAAATTACGAATTTCGATCACTAATAGAAGATGTTTATCGGTATGAA
AGGGTTACAAATATGCTCAATTTGGCTGTGATGGTTTTGGCCATGTTTAA
CATTATTCTCATTTTGATAATGATGTTATATTACCGGATCCACTGGCCAT
CGGTTTCCTATTCTAACCGTCAATATGTCGTATTACTTTTACTTTTATGG
TTAAATTTTCTTATATTGCCAGCATTCGTTATGAGGATAATACGAACCTT
TGTCCTTTTGCCGGCCCCTAATACTGAATACTTAGCAACAGGGTTGATTA
TGATACATTCCGCTTTCGCCTACACGCTAATGTTGGGCGGAATTCAAATT
GTCTTATTTGTGTTCGTGACTAATTTGAGAATATGGACCTACAGGTTCTT
TGATACGTTCCATTGCTTGATAATCGCATGTTGCATTGGTATTCCATTTC
CAATAATGTTCTTTTCATTCGTAACGATTATAGTTTCAATCCACAAAATA
AATTTTATACCCATAGCATATGGAACGTTTACATTTGTGATAGCCCCTTC
ATTGCTTGTGTTGATAATTTCATTTATACTAACAGGCATTTCAATATTTT
TCCCCGGTCGGGGAGGAGGGACGGTTGTAATGCTGGCCACGTACCCTTTA
ATAATTTTACAACTGGTCAACTTTTATCATGTAATGAAAGTGAAAAATAT
TTTTGCTTTTGAACACGAAAAGTTATTTTATCATACTTGTGGAATGTTTA
TTCAGGTGACTTATCAATCTTTGTGGTTCATCATCATGGTCATTCTCCCG
GTTAAAAATATCACATTGTTTGGCAAAAGGGATGCTCCATTCAGACATGA
ATATATTTATTTAATAAGATTTCAGAATCAAAAAGAGTTCGTCATTCCTT
CATCATCATCCGCCTCTTGGGACATTTAATACTTAAAATAATAAGACTTT
TGTTTTAGTATTCATTATATTAAAAATAAATATTTTGTTTAAAAAATAAA
AAGA
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protein sequence of SMED30006584-orf-1

>SMED30006584-orf-1 ID=SMED30006584-orf-1|Name=SMED30006584-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=643bp
MKWIFFIISLIHLFANSVKGNETNNIVYIFDIGFCSLEFLGFQGKIRIPL
LDIQIFYDRLLDKFICTVENRVYHDQLNIISFGNSNSFLCQHRSGPMKIE
KLFIINYATVLCNGNYSKNIVTNTTNLLFTTINRIESFSGFNLPIINMII
NITKSYKLISTMYSDQFLSSILSALDDLKDFEATQFDSYDHLNVEVHQMK
GNSKIVTIFDQSLYIRLVENMPVVFHTLLVPNVTKDVSYLLISIRNSSQP
ILFEVIIKRKSSDEIIECDIWYKKGKDPSEIECLVTNVADQWVSCQCNRT
GVLIIKKSDFISMSQRDKFNFDLFPPNLTGVPRTINYEFRSLIEDVYRYE
RVTNMLNLAVMVLAMFNIILILIMMLYYRIHWPSVSYSNRQYVVLLLLLW
LNFLILPAFVMRIIRTFVLLPAPNTEYLATGLIMIHSAFAYTLMLGGIQI
VLFVFVTNLRIWTYRFFDTFHCLIIACCIGIPFPIMFFSFVTIIVSIHKI
NFIPIAYGTFTFVIAPSLLVLIISFILTGISIFFPGRGGGTVVMLATYPL
IILQLVNFYHVMKVKNIFAFEHEKLFYHTCGMFIQVTYQSLWFIIMVILP
VKNITLFGKRDAPFRHEYIYLIRFQNQKEFVIPSSSSASWDI*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000208testis
Vocabulary: cellular component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.832
NoneNo IPR availableTMHMMTMhelixcoord: 540..562
NoneNo IPR availableTMHMMTMhelixcoord: 434..456
NoneNo IPR availableTMHMMTMhelixcoord: 392..414
NoneNo IPR availableTMHMMTMhelixcoord: 582..601
NoneNo IPR availableTMHMMTMhelixcoord: 358..380
NoneNo IPR availableTMHMMTMhelixcoord: 505..527
NoneNo IPR availableTMHMMTMhelixcoord: 473..495