SMED30006547

Overview
NameSMED30006547
Smed IDSMED30006547
Length (bp)3687
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30006547 (SMED30006547) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30006547 (SMED30006547) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30006547 (SMED30006547) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30006547 (SMED30006547) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30006547

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 9

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30006547SMESG000016698.1 Contig1777newmark_estsPMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30006547SMESG000016698.1 Contig1777uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30006547SMESG000005775.1 Contig1777newmark_estsPMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30006547SMESG000005775.1 Contig1777uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
head regionSMED30006547SMESG000016698.1 SmedASXL_003489SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
nervous systemSMED30006547SMESG000016698.1 dd_Smed_v4_13460_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30006547SMESG000016698.1 dd_Smed_v4_13460_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30006547SMESG000016698.1 dd_Smed_v4_13460_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30006547SMESG000016698.1 dd_Smed_v6_13460_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SMED30006547 vs. TrEMBL
Match: A0A3R7DBL8 (Uncharacterized protein (Fragment) OS=Clonorchis sinensis OX=79923 GN=CSKR_5664s PE=4 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.890e-32
Identity = 105/383 (27.42%), Postives = 176/383 (45.95%), Query Frame = 3 
Query:  111 KATYLPQDTDKFYCTQNSPILNSIFHEKITEKIELQSFGECQLHRKNCEKCFRPRC----ASHFKSIDSYD-------------------------YENCCQFIAQCLLQPSCIDYYSPTC-YYVDLAEHQHNLCIKGSTYQFTLNPQFSFNNKSFMCHMSLEKEKIIYQVKIKVSI-----------------------------PHWMK-LEFHLSENVTRPNIKGKLTTTPVYTYESTLMKMQHRFRINEYFQDAILHFKS--NKFHLYKLK--ERFSETKPIIKKHHQIKYTKIQASYPFAVNSRNWHKRSCYTNIEDLYENQLLYNESENISIKLLKLEKNNF-QAFNYYVNNIDQSHDINIAF--PEKSSILKSAIC 1058
            KA++LP   + FYCT NSP++N +F+E+ITE+        C   R+ C+ C R  C    A+   S D++D                          + CC     C   PSC++Y+SPTC  Y   ++H   +C++G T +FTLNP+F   N SFMCH++    + +Y +   + +                             P  MK L +  +E+    N++G      V    +  ++++H+   +  ++  IL  K+   +F++Y+LK  E F    P  +KH + KY  +Q + PF  N+ +W   SC  NI  ++++Q +Y+E+  I I L    + N   AF Y +N       I +      + S+L+SA+C
Sbjct:    1 KASFLPPQRNSFYCTTNSPLVNIVFNERITERQSYLKDSHCDTQRRLCQTCLRRSCWRESAALNSSSDTWDQTLGDDLAQKWDLLGDASADFKRAKAKECCS--VDCYSIPSCLEYFSPTCQAYTIHSQHVQEVCLQGKTLKFTLNPEFDLANGSFMCHLTRVPPENLYTINAWLVVNGTWKTDPVSHVVSLRPPNGIRDSRGAHSPQSMKHLRYRRAESSLNRNLRG------VVLLWNDKLRVEHQSSAS-LWEQLILKRKNAPGQFYVYRLKSFEEFGLAPPQYEKHREEKYATVQFTTPFLHNTESWGNESCQLNISHMHKSQPIYDETSEIPIVLASPTRRNANGAFQYTLNEAQLGTKIQVTMEVENQDSLLRSALC 374
[Close]
BLAST of SMED30006547 vs. TrEMBL
Match: A0A074ZJI3 (Uncharacterized protein (Fragment) OS=Opisthorchis viverrini OX=6198 GN=T265_14627 PE=4 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.373e-31
Identity = 110/383 (28.72%), Postives = 177/383 (46.21%), Query Frame = 3 
Query:  111 KATYLPQDTDKFYCTQNSPILNSIFHEKITEKIELQSFGECQLHRKNCEKCFRPRC----ASHFKSIDSYD-------------------------YENCCQFIAQCLLQPSCIDYYSPTC-YYVDLAEHQHNLCIKGSTYQFTLNPQFSFNNKSFMCHMSLEKEKIIYQVK-----------------IKVSIPHWMK--LEFHLSENVTRP-----------NIKGKLTTTPVYTYESTLMKMQHRFRINEYFQDAILHFKS--NKFHLYKLK--ERFSETKPIIKKHHQIKYTKIQASYPFAVNSRNWHKRSCYTNIEDLYENQLLYNESENISIKLLK-LEKNNFQAFNYYVNNIDQSHDINIAFPEKS--SILKSAIC 1058
            KA++LP   + FYCT NSP++N +F+E+ITE+        C   R+ C+ C R  C    A+   S D++D                          + CC     C   PSCI+Y+S TC  Y   ++H   +C++G T +FTLNP+F   N SFMCH++    + +Y +                  + +  P+ ++   E H S+ V              N++G      V  +   L +++H+   N + Q  IL  K+   +F++Y+LK  + F    P  +KH + KY  +Q + PF  N+ +W   SC  NI  ++++Q LY+E+  I I L     KN   AF Y +N       I +    +S  S+L+SA+C
Sbjct:    1 KASFLPPQRNSFYCTTNSPLVNIVFNERITERQSYLRDSHCDTQRRLCQTCLRRSCWRESAAMNSSSDTWDQTLGDELAQKWELLGDASANFKRAKVKECCG--VDCYSIPSCIEYFSATCQAYTIHSQHIQEVCLQGKTLKFTLNPEFDLANGSFMCHLTHVPPENLYTINTWLVVNGTWKTDPVSHVVSLRPPNGIRDTREAHSSKAVKHSRYRRAESSWSRNMRGM-----VLLWNDKL-RVEHQSSANLWGQ-LILKRKNALGQFYVYRLKSFDEFGLALPQYEKHREEKYATVQFTTPFLHNTESWGNESCQLNISHMHKSQPLYDETSEIPIVLASPTRKNANGAFQYTLNGAQLGPKIQVTMEAESKHSLLRSALC 374
[Close]
BLAST of SMED30006547 vs. TrEMBL
Match: A0A5K4F598 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 PE=4 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.235e-26
Identity = 99/390 (25.38%), Postives = 165/390 (42.31%), Query Frame = 3 
Query:  111 KATYLPQDTDKFYCTQNSPILNSIFHEKITEKIELQSFGECQLHRKNCEKCFRPRC---------------------ASHFKSIDSYDY------------------------ENCCQFIAQCLLQPSCIDYYSPTC-YYVDLAEHQHNLCIKGSTYQFTLNPQFSFNNKSFMCHMSLEKEKIIYQV------------KIKVSIPHWMKLEFHLSENVTRPNIKGKLTTTPVYTYESTLMK------------MQHRFRINEYFQDAILHFKSNK-FHLYKLK--ERFSETKPIIKKHHQIKYTKIQASYPFAVNSRNWHKRSCYTNIEDLYENQLLYNESENISIKLLKL-EKNNFQAFNYYVNNIDQSHDINIAFPEKSSILKSAIC 1058
            KA+YLP   + FYCT NSP++N +F E I E         C   R+ C+ C +  C                     ++H +  +++D+                         +CC    +C   PSC+DY+   C  Y     +   +C++G T +FTLNP+F F N ++ CH+     KIIY +            K+  S P  +K    L  N   P  K       + T E   +K            ++H+  +   + DAI+H   +K   L++LK  + F    P +++H + KY  +Q S PF  ++ NW  ++C  NI  ++  Q +Y E+  +S++   + ++    AF Y + N  +   I I      S+L +A C
Sbjct:  314 KASYLPPQLNSFYCTINSPLVNKLFQENIIESQSYLKDMHCDTQRRICQTCLKQSCLKSKTELFSEMNLKKAQHNLLSNHGEIENNHDFNEEIFYGNLLRVNTIEQNIWQANDPDCCGI--KCYSNPSCLDYFGSRCETYTSRHSNATEICLQGKTLKFTLNPEFDFTNGTYTCHVQHRPPKIIYTIETWLTLEIQGLPKLVWSSPR-LKYNIQLMSNGRPPRRKSNKVDYDIQTLEQQFLKHGILLLWNENIYLEHKTGL-PIWDDAIVHRSVDKEISLFQLKFLKDFGTEPPPLQRHKEEKYIVVQFSRPFQYSTSNWGNQTCQINISHIHRAQPIYAENTKVSVETTSIPQRTTSNAFLYTLKNSQKRSTIEIKSHINHSLLYTAAC 699
[Close]
BLAST of SMED30006547 vs. TrEMBL
Match: A0A4Z2DMR9 (Uncharacterized protein OS=Schistosoma japonicum OX=6182 GN=EWB00_010804 PE=4 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 3.277e-26
Identity = 101/389 (25.96%), Postives = 172/389 (44.22%), Query Frame = 3 
Query:  111 KATYLPQDTDKFYCTQNSPILNSIFHEKITEKIELQSFGECQLHRKNCEKCFRPRC---------------------ASHFKSI------DSYDYEN------------------CCQFIAQCLLQPSCIDYYSPTC-YYVDLAEHQHNLCIKGSTYQFTLNPQFSFNNKSFMCHMSLEKEKIIYQVKIKV-----SIPH--W----MKLEFHLSE------------NVTRPNIKGKLTTTPVYTYESTLMKMQHRFRINEYFQDAILHFKSNK-FHLYKLK--ERFSETKPIIKKHHQIKYTKIQASYPFAVNSRNWHKRSCYTNIEDLYENQLLYNESENISIKLL-KLEKNNFQAFNYYVNNIDQSHDINIAFPEKSSILKSAIC 1058
            KA+YLP   + FYCT NSP++N++F E I E         C   R+ C+ C +  C                     ++H ++I      D   YEN                  CC    +C   PSC+DY+S  C  Y     +   +C++G T +FTLNP+F F+N ++ CH+     KI+Y ++  +     S+P   W    +K + +L              N +  N++ +L    V       + ++H+  +   + DAI+H  + K   LY+LK    F    P + +H + KY  +Q + PF  ++ NW  ++C  NI  ++  Q +Y E   + ++++  ++K    AF Y + N  +   I I      S+L +A+C
Sbjct:  327 KASYLPPQLNSFYCTVNSPLVNNLFQENIVESQSYLKDLHCDTQRRICQTCLKQSCLQSKTEMNFEVSMKQTQSSIISNHVETITDSNFDDGIFYENLLRVNAIEQNIWQANDPDCCGI--KCYSTPSCLDYFSFRCEAYTSRHSNATEICLQGKTLKFTLNPEFDFSNGTYTCHVRYSPPKILYTIETWLTLKTQSLPKLIWSSSRLKYDIYLKNSGRYLGSRLSKLNNSSHNLERQLQKHGVLLLWDGSIYLEHQTDL-PIWNDAIVHRSAEKEISLYQLKVLTDFGSEPPTLHRHREEKYVVVQFTKPFQYSTANWGNQTCLINISHIHRAQPIYAEHTKVPMEIISGVQKTTSNAFLYILKNSQKRSTIEIRSHMNHSLLYTAVC 712
[Close]
BLAST of SMED30006547 vs. TrEMBL
Match: A0A5K4F6N1 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 PE=4 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.364e-26
Identity = 99/390 (25.38%), Postives = 165/390 (42.31%), Query Frame = 3 
Query:  111 KATYLPQDTDKFYCTQNSPILNSIFHEKITEKIELQSFGECQLHRKNCEKCFRPRC---------------------ASHFKSIDSYDY------------------------ENCCQFIAQCLLQPSCIDYYSPTC-YYVDLAEHQHNLCIKGSTYQFTLNPQFSFNNKSFMCHMSLEKEKIIYQV------------KIKVSIPHWMKLEFHLSENVTRPNIKGKLTTTPVYTYESTLMK------------MQHRFRINEYFQDAILHFKSNK-FHLYKLK--ERFSETKPIIKKHHQIKYTKIQASYPFAVNSRNWHKRSCYTNIEDLYENQLLYNESENISIKLLKL-EKNNFQAFNYYVNNIDQSHDINIAFPEKSSILKSAIC 1058
            KA+YLP   + FYCT NSP++N +F E I E         C   R+ C+ C +  C                     ++H +  +++D+                         +CC    +C   PSC+DY+   C  Y     +   +C++G T +FTLNP+F F N ++ CH+     KIIY +            K+  S P  +K    L  N   P  K       + T E   +K            ++H+  +   + DAI+H   +K   L++LK  + F    P +++H + KY  +Q S PF  ++ NW  ++C  NI  ++  Q +Y E+  +S++   + ++    AF Y + N  +   I I      S+L +A C
Sbjct:  323 KASYLPPQLNSFYCTINSPLVNKLFQENIIESQSYLKDMHCDTQRRICQTCLKQSCLKSKTELFSEMNLKKAQHNLLSNHGEIENNHDFNEEIFYGNLLRVNTIEQNIWQANDPDCCGI--KCYSNPSCLDYFGSRCETYTSRHSNATEICLQGKTLKFTLNPEFDFTNGTYTCHVQHRPPKIIYTIETWLTLEIQGLPKLVWSSPR-LKYNIQLMSNGRPPRRKSNKVDYDIQTLEQQFLKHGILLLWNENIYLEHKTGL-PIWDDAIVHRSVDKEISLFQLKFLKDFGTEPPPLQRHKEEKYIVVQFSRPFQYSTSNWGNQTCQINISHIHRAQPIYAENTKVSVETTSIPQRTTSNAFLYTLKNSQKRSTIEIKSHINHSLLYTAAC 708
[Close]
BLAST of SMED30006547 vs. Planmine SMEST
Match: SMESG000016698.1 (SMESG000016698.1)

HSP 1 Score: 1984.92 bits (5141), Expect = 0.000e+0
Identity = 1132/1153 (98.18%), Postives = 1132/1153 (98.18%), Query Frame = 3 
Query:  111 KATYLPQDTDKFYCTQNSPILNSIFHEKITEKIELQSFGECQLHRKNCEKCFRPRCASHFKSIDSYDYENCCQFIAQCLLQPSCIDYYSPTCYYVDLAEHQHNLCIKGSTYQFTLNPQFSFNNKSFMCHMSLEKEKIIYQVKIKVSIPHWMKLEFHLSENVTRPNIKGKLTTTPVYTYESTLMKMQHRFRINEYFQDAILHFKSNKFHLYKLKERFSETKPIIKKHHQIKYTKIQASYPFAVNSRNWHKRSCYTNIEDLYENQLLYNESENISIKLLKLEKNNFQAFNYYVNNIDQSHDINIAFPEKSSILKSAICXXXXXXXXXXXXXXKINFALKSQFNWTWFLEIKGEVESSYEYLNVKLLEKSKSKIVFNKDILIVELPVSEKNVFSVNHNLQFFPDSIDYFSKLELILILSDCHQSISYRMYIEQKFNQTFTSFSKNNTKFERLYETMFTNRYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHINKFYNKGCLRVKCQSWSWIVRSDKKRKFIIIVYVTLRIMYXXXXXXXXXXXXXXXXXXXXXXQSKSISLISLPMSTKDNLLKIEIEKNHEKCDLITKLQLKKFLNDLIENRNDTIQFWYQSNVSIPKTSAELFQMNLTXXXXXXXXXXXXXXXXXLKLRLADQIGPMKEIVDETVKLKWLSIISSGTKDKENFNFNILPIFGVSQMQSIILSKLNGTTKGLSKSKNFQRIFKNQINLIKINLVRGRFKRYFNLNEREKQILSKAHRVNRNANNLKFIVGNEMFSIIKIRISXXXXXXXXXXFRCYNIYRDFQIIWFGSERLLPYSYFHQITELQSNSELDQFLMERKNINTRLDSNDSKKSFVISSLDRLKFFKNNYYITLVIFCGLSFVTIFIFVILQSSQLTIWIRSLFNLQIKQFPNENVDRLQKKIFSLFSVYSKRRKHQLEVEFKLSLNNQKIQFXXXXXXXXXXXXXXXXEFCTILRIFSNSKNNGILKMKMQSEFLFIPLQIVEECLKNENVSNNVNRFQQQHCYVTNSSVRIHPDSLTSGRRQNKIELFIILQIRDFLLIFTSAXXXXXXXXXXXXXXXXSKNHLLEKRISGVKILHFQSFLSNEPPTPPCNITSSSYPILRSSNSDDNDLYFNIDSRSPMKYLLIRLNDNRETDI 3569
            KATYLPQDTDKFYCTQNSPILNSIFHEKITEKIELQSFGECQLHRKNCEKCFRPRCASHFKSIDSYDYENCCQFIAQCLLQPSCIDYYSPTCYYVDLAEHQHNLCIKGSTYQFTLNPQFSFNNKSFMCHMSLEKEKIIYQVKIKVSIPHWMKLEFHLSENVTRPNIKGKLTTTPVYTYESTLMKMQHRFRINEYFQDAILHFKSNKFHLYKLKERFSETKPIIKKHHQIKYTKIQASYPFAVNSRNWHKRSCYTNIEDLYENQLLYNESENISIKLLKLEKNNFQAFNYYVNNIDQSHDINIAFPEKSSILKSAICSLHHLNSRSNLSELKINFALKSQFNWTWFLEIKGEVESSYEYLNVKLLEKSKSKIVFNKDILIVELPVSEKNVFSVNHNLQFFPDSIDYFSKLELILILSDCHQSISYRMYIEQKFNQTFTSFSKNNTKFERLYETMFTNRYLFSILRMLFLLFIMISIIILVIVSMKVLLHINKFYNKGCLRVKCQSWSWIVRSDKKRKFIIIVYVTLRIMYTFIFTSTCIISIILTININSITQSKSISLISLPMSTKDNLLKIEIEKNHEKCDLITKLQLKKFLNDLIENRNDTIQFWYQSNVSIPKTSAELFQMNLTKINSKIYKYIQKKIMKNLKLRLADQIGPMKEIVDETVKLKWLSIISSGTKDKENFNFNILPIFGVSQMQSIILSKLNGTTKGLSKSKNFQRIFKNQINLIKINLVRGRFKRYFNLNEREKQILSKAHRVNRNANNLKFIVGNEMFSIIKIRISLLVLDLMLILFRCYNIYRDFQIIWFGSERLLPYSYFHQITELQSNSELDQFLMERKNINTRLDSNDSKKSFVISSLDRLKFFKNNYYITL                     LTIWIRSLFNLQIKQFPNENVDRLQKKIFSLFSVYSKRRKHQLEVEFKLSLNNQKIQFKSYKHYQKYQQNYQSHEFCTILRIFSNSKNNGILKMKMQSEFLFIPLQIVEECLKNENVSNNVNRFQQQHCYVTNSSVRIHPDSLTSGRRQNKIELFIILQIRDFLLIFTSAFLISLLSMNLLQLIFNSKNHLLEKRISGVKILHFQSFLSNEPPTPPCNITSSSYPILRSSNSDDNDLYFNIDSRSPMKYLLIRLNDNRETDI
Sbjct:  223 KATYLPQDTDKFYCTQNSPILNSIFHEKITEKIELQSFGECQLHRKNCEKCFRPRCASHFKSIDSYDYENCCQFIAQCLLQPSCIDYYSPTCYYVDLAEHQHNLCIKGSTYQFTLNPQFSFNNKSFMCHMSLEKEKIIYQVKIKVSIPHWMKLEFHLSENVTRPNIKGKLTTTPVYTYESTLMKMQHRFRINEYFQDAILHFKSNKFHLYKLKERFSETKPIIKKHHQIKYTKIQASYPFAVNSRNWHKRSCYTNIEDLYENQLLYNESENISIKLLKLEKNNFQAFNYYVNNIDQSHDINIAFPEKSSILKSAICSLHHLNSRSNLSELKINFALKSQFNWTWFLEIKGEVESSYEYLNVKLLEKSKSKIVFNKDILIVELPVSEKNVFSVNHNLQFFPDSIDYFSKLELILILSDCHQSISYRMYIEQKFNQTFTSFSKNNTKFERLYETMFTNRYLFSILRMLFLLFIMISIIILVIVSMKVLLHINKFYNKGCLRVKCQSWSWIVRSDKKRKFIIIVYVTLRIMYTFIFTSTCIISIILTININSITQSKSISLISLPMSTKDNLLKIEIEKNHEKCDLITKLQLKKFLNDLIENRNDTIQFWYQSNVSIPKTSAELFQMNLTKINSKIYKYIQKKIMKNLKLRLADQIGPMKEIVDETVKLKWLSIISSGTKDKENFNFNILPIFGVSQMQSIILSKLNGTTKGLSKSKNFQRIFKNQINLIKINLVRGRFKRYFNLNEREKQILSKAHRVNRNANNLKFIVGNEMFSIIKIRISLLVLDLMLILFRCYNIYRDFQIIWFGSERLLPYSYFHQITELQSNSELDQFLMERKNINTRLDSNDSKKSFVISSLDRLKFFKNNYYITL---------------------LTIWIRSLFNLQIKQFPNENVDRLQKKIFSLFSVYSKRRKHQLEVEFKLSLNNQKIQFKSYKHYQKYQQNYQSHEFCTILRIFSNSKNNGILKMKMQSEFLFIPLQIVEECLKNENVSNNVNRFQQQHCYVTNSSVRIHPDSLTSGRRQNKIELFIILQIRDFLLIFTSAFLISLLSMNLLQLIFNSKNHLLEKRISGVKILHFQSFLSNEPPTPPCNITSSSYPILRSSNSDDNDLYFNIDSRSPMKYLLIRLNDNRETDI 1354
[Close]
BLAST of SMED30006547 vs. Planmine SMEST
Match: SMESG000016698.1 (SMESG000016698.1)

HSP 1 Score: 1141.33 bits (2951), Expect = 0.000e+0
Identity = 707/728 (97.12%), Postives = 707/728 (97.12%), Query Frame = 3 
Query: 1386 MYIEQKFNQTFTSFSKNNTKFERLYETMFTNRYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHINKFYNKGCLRVKCQSWSWIVRSDKKRKFIIIVYVTLRIMYXXXXXXXXXXXXXXXXXXXXXXQSKSISLISLPMSTKDNLLKIEIEKNHEKCDLITKLQLKKFLNDLIENRNDTIQFWYQSNVSIPKTSAELFQMNLTXXXXXXXXXXXXXXXXXLKLRLADQIGPMKEIVDETVKLKWLSIISSGTKDKENFNFNILPIFGVSQMQSIILSKLNGTTKGLSKSKNFQRIFKNQINLIKINLVRGRFKRYFNLNEREKQILSKAHRVNRNANNLKFIVGNEMFSIIKIRISXXXXXXXXXXFRCYNIYRDFQIIWFGSERLLPYSYFHQITELQSNSELDQFLMERKNINTRLDSNDSKKSFVISSLDRLKFFKNNYYITLVIFCGLSFVTIFIFVILQSSQLTIWIRSLFNLQIKQFPNENVDRLQKKIFSLFSVYSKRRKHQLEVEFKLSLNNQKIQFXXXXXXXXXXXXXXXXEFCTILRIFSNSKNNGILKMKMQSEFLFIPLQIVEECLKNENVSNNVNRFQQQHCYVTNSSVRIHPDSLTSGRRQNKIELFIILQIRDFLLIFTSAXXXXXXXXXXXXXXXXSKNHLLEKRISGVKILHFQSFLSNEPPTPPCNITSSSYPILRSSNSDDNDLYFNIDSRSPMKYLLIRLNDNRETDI 3569
            MYIEQKFNQTFTSFSKNNTKFERLYETMFTNRYLFSILRMLFLLFIMISIIILVIVSMKVLLHINKFYNKGCLRVKCQSWSWIVRSDKKRKFIIIVYVTLRIMYTFIFTSTCIISIILTININSITQSKSISLISLPMSTKDNLLKIEIEKNHEKCDLITKLQLKKFLNDLIENRNDTIQFWYQSNVSIPKTSAELFQMNLTKINSKIYKYIQKKIMKNLKLRLADQIGPMKEIVDETVKLKWLSIISSGTKDKENFNFNILPIFGVSQMQSIILSKLNGTTKGLSKSKNFQRIFKNQINLIKINLVRGRFKRYFNLNEREKQILSKAHRVNRNANNLKFIVGNEMFSIIKIRISLLVLDLMLILFRCYNIYRDFQIIWFGSERLLPYSYFHQITELQSNSELDQFLMERKNINTRLDSNDSKKSFVISSLDRLKFFKNNYYITL                     LTIWIRSLFNLQIKQFPNENVDRLQKKIFSLFSVYSKRRKHQLEVEFKLSLNNQKIQFKSYKHYQKYQQNYQSHEFCTILRIFSNSKNNGILKMKMQSEFLFIPLQIVEECLKNENVSNNVNRFQQQHCYVTNSSVRIHPDSLTSGRRQNKIELFIILQIRDFLLIFTSAFLISLLSMNLLQLIFNSKNHLLEKRISGVKILHFQSFLSNEPPTPPCNITSSSYPILRSSNSDDNDLYFNIDSRSPMKYLLIRLNDNRETDI
Sbjct:    1 MYIEQKFNQTFTSFSKNNTKFERLYETMFTNRYLFSILRMLFLLFIMISIIILVIVSMKVLLHINKFYNKGCLRVKCQSWSWIVRSDKKRKFIIIVYVTLRIMYTFIFTSTCIISIILTININSITQSKSISLISLPMSTKDNLLKIEIEKNHEKCDLITKLQLKKFLNDLIENRNDTIQFWYQSNVSIPKTSAELFQMNLTKINSKIYKYIQKKIMKNLKLRLADQIGPMKEIVDETVKLKWLSIISSGTKDKENFNFNILPIFGVSQMQSIILSKLNGTTKGLSKSKNFQRIFKNQINLIKINLVRGRFKRYFNLNEREKQILSKAHRVNRNANNLKFIVGNEMFSIIKIRISLLVLDLMLILFRCYNIYRDFQIIWFGSERLLPYSYFHQITELQSNSELDQFLMERKNINTRLDSNDSKKSFVISSLDRLKFFKNNYYITL---------------------LTIWIRSLFNLQIKQFPNENVDRLQKKIFSLFSVYSKRRKHQLEVEFKLSLNNQKIQFKSYKHYQKYQQNYQSHEFCTILRIFSNSKNNGILKMKMQSEFLFIPLQIVEECLKNENVSNNVNRFQQQHCYVTNSSVRIHPDSLTSGRRQNKIELFIILQIRDFLLIFTSAFLISLLSMNLLQLIFNSKNHLLEKRISGVKILHFQSFLSNEPPTPPCNITSSSYPILRSSNSDDNDLYFNIDSRSPMKYLLIRLNDNRETDI 707
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BLAST of SMED30006547 vs. Planmine SMEST
Match: SMESG000016698.1 (SMESG000016698.1)

HSP 1 Score: 637.106 bits (1642), Expect = 0.000e+0
Identity = 306/307 (99.67%), Postives = 306/307 (99.67%), Query Frame = 3 
Query:  111 KATYLPQDTDKFYCTQNSPILNSIFHEKITEKIELQSFGECQLHRKNCEKCFRPRCASHFKSIDSYDYENCCQFIAQCLLQPSCIDYYSPTCYYVDLAEHQHNLCIKGSTYQFTLNPQFSFNNKSFMCHMSLEKEKIIYQVKIKVSIPHWMKLEFHLSENVTRPNIKGKLTTTPVYTYESTLMKMQHRFRINEYFQDAILHFKSNKFHLYKLKERFSETKPIIKKHHQIKYTKIQASYPFAVNSRNWHKRSCYTNIEDLYENQLLYNESENISIKLLKLEKNNFQAFNYYVNNIDQSHDINIAFPEK 1031
            KATYLPQDTDKFYCTQNSPILNSIFHEKITEKIELQSFGECQLHRKNCEKCFRPRCASHFKSIDSYDYENCCQFIAQCLLQPSCIDYYSPTCYYVDLAEHQHNLCIKGSTYQFTLNPQFSFNNKSFMCHMSLEKEKIIYQVKIKVSIPHWMKLEFHLSENVTRPNIKGKLTTTPVYTYESTLMKMQHRFRINEYFQDAILHFKSNKFHLYKLKERFSETKPIIKKHHQIKYTKIQASYPFAVNSRNWHKRSCYTNIEDLYENQLLYNESENISIKLLKLEKNNFQAFNYYVNNIDQSHDINIAFP K
Sbjct:  223 KATYLPQDTDKFYCTQNSPILNSIFHEKITEKIELQSFGECQLHRKNCEKCFRPRCASHFKSIDSYDYENCCQFIAQCLLQPSCIDYYSPTCYYVDLAEHQHNLCIKGSTYQFTLNPQFSFNNKSFMCHMSLEKEKIIYQVKIKVSIPHWMKLEFHLSENVTRPNIKGKLTTTPVYTYESTLMKMQHRFRINEYFQDAILHFKSNKFHLYKLKERFSETKPIIKKHHQIKYTKIQASYPFAVNSRNWHKRSCYTNIEDLYENQLLYNESENISIKLLKLEKNNFQAFNYYVNNIDQSHDINIAFPGK 529
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BLAST of SMED30006547 vs. Planmine SMEST
Match: SMESG000077687.1 (SMESG000077687.1)

HSP 1 Score: 122.094 bits (305), Expect = 1.562e-27
Identity = 122/426 (28.64%), Postives = 195/426 (45.77%), Query Frame = 3 
Query:  111 KATYLPQDTDKFYCTQNSPILNSIFHEKITEKIELQSFGECQLHRKNCEKCFRPRCASHFKSIDSYDYENCCQFIAQCLLQPSCIDYYSPTCY--YVDLAEHQHNLCIKGSTYQFTLNPQFSFNNKSFMCHMSLEKEKIIYQVKIKVSIPHWMKLEFHLSENVTRPNIKGKLTTTPVYTYESTLMKMQ-HRF--------------RINEYFQDAILHF-KSNKFHLYKLKERFSETKPIIK--KHHQIKYTKIQASYPFAVNSRNWHKRSCYTNIEDLYENQLLYNESENISIKLLK----LEKNNFQAFNYYVNNIDQSHDINIAFPEKSSILKSAICXXXXXXXXXXXXXXKINFALKSQFNW--TWFLEIKGEVESSYEYLNVKLLEKSKSKIVFNKDILIVELPVSEKNVFSVNHNLQFFP 1310
            KA+ LP + + FYCTQNS  +N+IF+ +I EKI +     C ++ K C+ C R        S  S   ++CC+   +C    SC+ +Y+  CY   +D + H  N+C+KG T +FTL P+F F N+SF+CH+           KI  S P  M + F+L       N K   T+ P+   E  L K   H+F                  Y +    H  KS  + LYK+K++   TK  +K  KH   KY + Q   PF  NS NW+  SC  + ++ Y  Q LY   +   +K+L      +  +  AF Y +++      + +    K SI++S +CS               +F       W   W +  +G V     ++NVK+++ +   ++F++D  I+     + N F ++ N Q  P
Sbjct:  648 KASLLPFERNGFYCTQNSEFVNNIFNHQIDEKISVSQKSICDVYYKKCKTCLRSSVKVCQNS--SKKSKSCCE--TKCYRNLSCMAFYTSKCYDGKLDKSLHAENICLKGDTLKFTLLPKFDFENESFLCHLK----------KIDDSKPR-MTISFNLH---IIDNDKPLWTSKPI-VQEIMLDKFSGHKFIDFISLNWTNFIDSEKEMYLKGFQEHGTKSISYRLYKMKKKKDFTKGPMKVYKHQNSKYLQFQNWQPFYFNSENWYNFSCRLSTKNFYPIQDLY-LPDYQRVKVLSKNHDSKGESKSAFKYTIDSFHNPSQVKVELLNK-SIIRSFVCSEKSGKLIIPTGNFDSHFLQLISVRWPTVWKIYFEGTVSDIPTFINVKIIDITSQSVLFHQD-QIIHKSYYDTNQFFISENFQEKP 1051
[Close]
BLAST of SMED30006547 vs. Planmine SMEST
Match: SMESG000010387.1 (SMESG000010387.1)

HSP 1 Score: 119.013 bits (297), Expect = 1.036e-26
Identity = 89/321 (27.73%), Postives = 151/321 (47.04%), Query Frame = 3 
Query:  123 LPQDTDKFYCTQNSPILNSIFHEKITEKIELQSFGECQLHRKNCEKCFRPRCASHFKSIDSYDYENCCQFIAQCLLQPSCIDYYSPTCY--YVDLAEHQHNLCIKGSTYQFTLNPQFSFNNKSFMCHMSLEKEKIIYQVKIKVSIPHWMKLEFHLSENVTRPNIKGKLTTTPVYTYESTLMKMQHRFRINEYFQDAILHFKSNKFHLYKLKE--RFSETKPIIKKHHQIKYTKIQASYPFAVNSRNWHKRSCYTNIEDLYENQLLYNESENISIKLLKLEKNNF----QAFNY-YVNNIDQSHDINIAFPEKSSILKSAIC 1058
            L +  +  YC++NSP+L  +F E + E     S  +C+  R  C  C   +C ++           CCQ  + CLLQ SC+ YY+ +CY  Y +   +  + CIKG TY+FTL P+F FN   F C+  L+KE +  +V + +   +  K +  L +   +    G+   + V  + +  +++     + +   + I   K  +  +Y LK   +F ++KP I K     Y K+Q   PF  N+  W    C  NI  +Y+ Q ++  S  + I+L+K +K         F+Y ++    ++  I     EKSS+L    C
Sbjct:  190 LDESLNSLYCSENSPLLTELFGETVEEIETFVSRPKCESARARCTDCQIFKCKTN----------KCCQLKSNCLLQDSCLTYYNTSCYRSYEEALYNNKSRCIKGKTYKFTLIPEFDFNTDKFQCY--LKKENLRPKVSVTLDFIN-RKSKLKLQKRSVK--FGGRFPDSNVLQFNN--LQLVFHPSLIDSMDEVIFGKKGFEHFIYPLKPVLKFDQSKPKIHKLFSKSYIKVQMYRPFLHNTETWSNEKCQVNISGIYKEQEIFEPSSKMPIELVKKQKMAVTKTKTVFSYQFLPKGLETQKILFQISEKSSLLSLYFC 493
The following BLAST results are available for this feature:
BLAST of SMED30006547 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006547 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006547 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006547 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006547 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006547 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006547 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006547 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A3R7DBL82.890e-3227.42Uncharacterized protein (Fragment) OS=Clonorchis s... [more]
A0A074ZJI31.373e-3128.72Uncharacterized protein (Fragment) OS=Opisthorchis... [more]
A0A5K4F5983.235e-2625.38Uncharacterized protein OS=Schistosoma mansoni OX=... [more]
A0A4Z2DMR93.277e-2625.96Uncharacterized protein OS=Schistosoma japonicum O... [more]
A0A5K4F6N13.364e-2625.38Uncharacterized protein OS=Schistosoma mansoni OX=... [more]
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BLAST of SMED30006547 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006547 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006547 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006547 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006547 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006547 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000016698.10.000e+098.18SMESG000016698.1[more]
SMESG000016698.10.000e+097.12SMESG000016698.1[more]
SMESG000016698.10.000e+099.67SMESG000016698.1[more]
SMESG000077687.11.562e-2728.64SMESG000077687.1[more]
SMESG000010387.11.036e-2627.73SMESG000010387.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30006547 ID=SMED30006547|Name=SMED30006547|organism=Schmidtea mediterranea sexual|type=transcript|length=3687bp
ATTCGAGCGAGTAAGCATTCCAATTTAATTTTCTATTTAAAATTTTGATT
TTCCATTATTTTTATATATACCCTTATAAATAATTATCAAAATGTATGTT
TTATATTTAGAAAGCTACCTATCTACCTCAGGACACAGACAAATTTTATT
GTACTCAAAATTCACCGATTTTAAACAGTATTTTCCATGAAAAGATAACG
GAAAAAATAGAATTACAATCGTTTGGAGAATGTCAGTTACACAGAAAAAA
TTGTGAAAAATGTTTCAGGCCAAGATGTGCAAGTCATTTTAAATCTATTG
ATTCCTATGATTATGAAAACTGCTGCCAATTCATTGCACAATGTCTGTTA
CAGCCAAGTTGTATAGATTATTATTCCCCGACATGTTACTATGTAGATTT
GGCAGAACATCAACACAATTTATGTATCAAAGGTTCCACTTATCAATTTA
CTCTAAACCCACAATTCTCCTTCAATAACAAATCATTTATGTGCCACATG
AGCTTGGAAAAGGAAAAAATCATTTATCAAGTGAAAATAAAAGTTTCCAT
TCCACATTGGATGAAGCTTGAGTTCCATCTTTCAGAAAATGTAACTCGAC
CTAACATTAAAGGCAAATTAACCACAACTCCCGTCTATACTTACGAGTCT
ACGTTGATGAAAATGCAGCACCGATTCAGAATCAACGAATATTTTCAGGA
TGCAATTCTTCATTTCAAGTCAAACAAGTTTCATCTGTATAAGTTAAAAG
AAAGGTTTTCAGAAACCAAGCCAATCATAAAAAAACACCATCAAATAAAA
TACACGAAAATTCAAGCATCGTATCCGTTTGCGGTTAACAGTCGAAATTG
GCACAAACGATCCTGTTATACTAATATCGAGGATTTGTACGAAAACCAAT
TACTATATAATGAAAGTGAAAATATTTCCATAAAGTTATTGAAATTGGAG
AAAAACAATTTTCAAGCATTTAATTATTATGTTAATAATATTGACCAATC
ACATGATATCAATATTGCTTTCCCCGAAAAATCAAGCATTTTGAAATCAG
CGATTTGCAGTTTGCACCACCTCAACAGTCGAAGCAATTTATCTGAATTG
AAAATCAACTTTGCATTAAAATCACAATTTAATTGGACTTGGTTTCTAGA
AATTAAAGGTGAAGTAGAAAGTTCCTACGAATATTTAAATGTGAAATTGT
TGGAAAAATCCAAATCGAAAATCGTCTTCAACAAAGATATTCTTATTGTC
GAATTGCCAGTCAGTGAAAAAAACGTTTTCTCCGTAAATCACAACCTCCA
ATTTTTTCCAGATTCAATTGACTATTTTTCTAAATTAGAACTTATCCTAA
TTCTTTCGGATTGTCATCAAAGTATTTCCTATAGAATGTACATAGAACAG
AAATTCAATCAAACTTTCACTTCTTTTTCCAAAAACAACACAAAATTCGA
ACGTTTGTATGAAACAATGTTTACAAATAGATATTTATTTTCTATTTTAC
GGATGCTATTTTTACTTTTTATCATGATTTCAATCATAATTCTGGTAATT
GTTTCAATGAAGGTTTTACTTCATATAAACAAATTCTACAACAAAGGTTG
CCTTCGTGTCAAATGTCAAAGTTGGTCATGGATAGTCAGATCGGATAAGA
AAAGAAAATTCATAATCATTGTTTATGTGACATTGAGAATCATGTATACT
TTTATTTTCACCTCCACCTGCATAATATCCATCATATTAACAATAAATAT
CAACTCCATCACACAGAGCAAATCCATTAGTTTAATTTCCCTTCCCATGA
GCACGAAAGATAATTTATTAAAAATTGAAATTGAGAAAAACCACGAAAAA
TGTGATTTGATTACGAAATTACAGTTGAAAAAGTTTCTGAACGATTTGAT
AGAAAATAGAAACGACACAATTCAATTTTGGTATCAGTCGAACGTTTCTA
TTCCAAAAACATCGGCCGAACTGTTTCAGATGAATTTGACGAAAATCAAC
TCAAAAATTTATAAATATATTCAAAAGAAAATCATGAAAAACCTTAAGCT
GAGACTGGCAGATCAAATTGGGCCGATGAAAGAAATTGTAGATGAGACTG
TAAAGCTGAAATGGTTGAGCATCATATCAAGTGGAACAAAGGATAAAGAA
AATTTCAATTTCAACATTTTGCCAATTTTCGGAGTTTCACAAATGCAATC
AATTATCTTGTCCAAGCTTAATGGTACCACAAAGGGTTTGTCAAAGTCAA
AGAATTTTCAAAGAATTTTCAAGAATCAAATAAATCTAATAAAAATAAAT
CTCGTCCGAGGACGCTTTAAACGTTATTTTAACCTAAATGAAAGAGAAAA
GCAGATATTGTCTAAAGCTCACAGAGTCAATAGAAATGCGAATAATTTGA
AATTCATAGTTGGAAATGAAATGTTTTCAATAATTAAAATTCGAATCAGT
TTATTAGTTTTGGATTTGATGTTGATTCTCTTTCGATGTTATAACATCTA
CAGGGATTTCCAAATAATTTGGTTTGGATCCGAGCGACTCCTGCCATATT
CTTACTTTCACCAAATTACGGAGCTCCAGTCGAATTCGGAGCTTGATCAG
TTTTTGATGGAGAGAAAAAACATTAACACTCGACTCGATTCAAACGATTC
TAAAAAATCTTTCGTCATTTCTTCTTTGGACAGATTAAAATTTTTCAAAA
ACAACTACTACATTACTTTAGTAATATTTTGTGGTTTATCCTTTGTCACA
ATTTTTATATTTGTCATTCTACAATCATCGCAGTTAACAATTTGGATAAG
ATCTTTATTCAACTTACAGATAAAACAATTTCCCAATGAAAATGTCGACC
GTTTGCAAAAGAAAATATTCTCCTTATTTTCAGTTTATAGTAAAAGAAGA
AAACATCAGCTGGAGGTAGAATTTAAGCTCTCCTTAAACAATCAAAAGAT
ACAATTCAAAAGTTACAAACATTATCAAAAATATCAGCAAAACTATCAAA
GTCATGAGTTTTGCACAATTCTCCGAATTTTCAGCAATTCAAAAAATAAT
GGAATTTTAAAAATGAAAATGCAGTCGGAATTTTTATTTATTCCATTACA
AATCGTTGAAGAATGTTTAAAAAATGAAAATGTTTCAAACAATGTAAATA
GATTTCAACAACAGCATTGCTACGTAACGAATTCATCGGTGCGCATTCAT
CCAGATTCCCTAACGAGCGGACGACGACAAAACAAAATCGAATTGTTCAT
CATTCTACAAATCAGAGATTTTCTGCTGATTTTTACTAGTGCGTTTCTAA
TTTCATTATTATCAATGAATCTGTTGCAACTGATTTTCAATTCTAAAAAC
CATTTGTTAGAAAAACGAATTTCAGGAGTGAAAATTTTGCATTTTCAATC
TTTTTTGTCAAACGAACCGCCAACCCCCCCTTGCAATATCACATCCTCCT
CATATCCGATTCTCAGATCAAGCAACAGTGACGATAATGACCTATATTTC
AATATAGATTCAAGATCACCGATGAAATATCTACTAATCAGATTAAATGA
TAACCGGGAGACCGATATTTGATTCTTCGAACGAATATATTTCAATTGTT
TTTGCTATTTTCTTTTCAATTTTTTTAACAAAATTATTGTACATCAAATG
TTTTTAGTAGATGTAAAATTATCTATTTTGCTTCAGG
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protein sequence of SMED30006547-orf-1

>SMED30006547-orf-1 ID=SMED30006547-orf-1|Name=SMED30006547-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1028bp
MCHMSLEKEKIIYQVKIKVSIPHWMKLEFHLSENVTRPNIKGKLTTTPVY
TYESTLMKMQHRFRINEYFQDAILHFKSNKFHLYKLKERFSETKPIIKKH
HQIKYTKIQASYPFAVNSRNWHKRSCYTNIEDLYENQLLYNESENISIKL
LKLEKNNFQAFNYYVNNIDQSHDINIAFPEKSSILKSAICSLHHLNSRSN
LSELKINFALKSQFNWTWFLEIKGEVESSYEYLNVKLLEKSKSKIVFNKD
ILIVELPVSEKNVFSVNHNLQFFPDSIDYFSKLELILILSDCHQSISYRM
YIEQKFNQTFTSFSKNNTKFERLYETMFTNRYLFSILRMLFLLFIMISII
ILVIVSMKVLLHINKFYNKGCLRVKCQSWSWIVRSDKKRKFIIIVYVTLR
IMYTFIFTSTCIISIILTININSITQSKSISLISLPMSTKDNLLKIEIEK
NHEKCDLITKLQLKKFLNDLIENRNDTIQFWYQSNVSIPKTSAELFQMNL
TKINSKIYKYIQKKIMKNLKLRLADQIGPMKEIVDETVKLKWLSIISSGT
KDKENFNFNILPIFGVSQMQSIILSKLNGTTKGLSKSKNFQRIFKNQINL
IKINLVRGRFKRYFNLNEREKQILSKAHRVNRNANNLKFIVGNEMFSIIK
IRISLLVLDLMLILFRCYNIYRDFQIIWFGSERLLPYSYFHQITELQSNS
ELDQFLMERKNINTRLDSNDSKKSFVISSLDRLKFFKNNYYITLVIFCGL
SFVTIFIFVILQSSQLTIWIRSLFNLQIKQFPNENVDRLQKKIFSLFSVY
SKRRKHQLEVEFKLSLNNQKIQFKSYKHYQKYQQNYQSHEFCTILRIFSN
SKNNGILKMKMQSEFLFIPLQIVEECLKNENVSNNVNRFQQQHCYVTNSS
VRIHPDSLTSGRRQNKIELFIILQIRDFLLIFTSAFLISLLSMNLLQLIF
NSKNHLLEKRISGVKILHFQSFLSNEPPTPPCNITSSSYPILRSSNSDDN
DLYFNIDSRSPMKYLLIRLNDNRETDI*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000070intestinal phagocyte
PLANA:0000099neuron
PLANA:0000101muscle cell
PLANA:0000418head
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 397..419
NoneNo IPR availableTMHMMTMhelixcoord: 928..950
NoneNo IPR availableTMHMMTMhelixcoord: 739..761
NoneNo IPR availableTMHMMTMhelixcoord: 341..363