SMED30006541

Overview
NameSMED30006541
Smed IDSMED30006541
Length (bp)984
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30006541 (SMED30006541) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30006541 (SMED30006541) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30006541 (SMED30006541) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30006541 (SMED30006541) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30006541

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 25

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30006541SMESG000058954.1 PL06013B2A05ncbi_smed_estsPMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30006541SMESG000058954.1 Contig2808GPL15192PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
pharynxSMED30006541SMESG000012332.1 SMESG000012317.1 SMESG000058954.1 dd_Smed_v4_246_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
protonephridiaSMED30006541SMESG000012332.1 SMESG000012317.1 SMESG000058954.1 dd_Smed_v4_246_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30006541SMESG000012332.1 SMESG000012317.1 SMESG000058954.1 dd_Smed_v4_246_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30006541SMESG000012332.1 SMESG000012317.1 SMESG000058954.1 dd_Smed_v4_246_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30006541SMESG000012332.1 SMESG000012317.1 SMESG000058954.1 dd_Smed_v4_246_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30006541SMESG000012332.1 SMESG000012317.1 SMESG000058954.1 dd_Smed_v4_246_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30006541SMESG000012332.1 SMESG000012317.1 SMESG000058954.1 dd_Smed_v4_246_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		whole organism asexual adult colorimetric in situ hybridization evidence
parapharyngeal regionSMED30006541SMESG000012332.1 SMESG000012317.1 SMESG000058954.1 dd_Smed_v4_246_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30006541SMESG000012332.1 SMESG000012317.1 SMESG000058954.1 dd_Smed_v4_246_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30006541SMESG000012332.1 SMESG000012317.1 SMESG000058954.1 dd_Smed_v4_246_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30006541SMESG000012332.1 SMESG000012317.1 SMESG000058954.1 dd_Smed_v4_246_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30006541SMESG000012332.1 SMESG000012317.1 SMESG000058954.1 dd_Smed_v4_246_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30006541SMESG000012332.1 SMESG000012317.1 SMESG000058954.1 dd_Smed_v4_246_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30006541SMESG000012332.1 SMESG000012317.1 SMESG000058954.1 dd_Smed_v4_246_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neural progenitor cellSMED30006541SMESG000012332.1 SMESG000012317.1 SMESG000058958.1 SMESG000058954.1 dd_Smed_v6_246_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
protonephridiaSMED30006541SMESG000012332.1 SMESG000012317.1 SMESG000058958.1 SMESG000058954.1 dd_Smed_v6_246_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30006541SMESG000012332.1 SMESG000012317.1 SMESG000058958.1 SMESG000058954.1 dd_Smed_v6_246_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30006541SMESG000012332.1 SMESG000012317.1 SMESG000058958.1 SMESG000058954.1 dd_Smed_v6_246_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30006541SMESG000012332.1 SMESG000012317.1 SMESG000058958.1 SMESG000058954.1 dd_Smed_v6_246_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cholinergic neuronSMED30006541SMESG000012332.1 SMESG000012317.1 SMESG000058958.1 SMESG000058954.1 dd_Smed_v6_246_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynx progenitor cellSMED30006541SMESG000012332.1 SMESG000012317.1 SMESG000058958.1 SMESG000058954.1 dd_Smed_v6_246_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
secretory systemSMED30006541SMESG000012332.1 SMESG000012317.1 SMESG000058958.1 SMESG000058954.1 dd_Smed_v6_246_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30006541SMESG000012332.1 SMESG000012317.1 SMESG000058954.1 dd_Smed_v4_246_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30006541 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.001419:74245..77976 +4777
Homology
[Close]
BLAST of SMED30006541 vs. Planmine SMEST
Match: SMESG000058958.1 (SMESG000058958.1)

HSP 1 Score: 393.275 bits (1009), Expect = 5.594e-139
Identity = 201/261 (77.01%), Postives = 218/261 (83.52%), Query Frame = 3 
Query:   99 MSVEILYRNEIFTQEVSTDMSVKMLREKLAEIKSLNIADFSLKIDQLLLLEDKPVHKYLNTEFSLTDNGKYIKIEINDLTFAIKITEKSREISLEATAEISIGDLKNKIMNKLKLTGAQWSMKKNNEIIDDKDSLLNHIDKKRFTIYFQTFVVIVNCVDRNYSVTVTKDMTILEFRKECFKKIGEQINEFLILFNGESLDYEKVITLEDLVVGILFNIDVINIHQTEKVKKDNLTLGFYEVVPNSVLVLVPKVKGGFIYMM 881
            MSVEILYRNEIFTQEVSTDMSVK+L+EKLAEIK LNIADF+LKIDQLLLLEDKPVHKYLNTEFSLTDN KYIK+EINDLTFAIKITEKSREISLEATAEISIGDLKNKIMNKLKLTGAQWSMKKNNEIIDDKDSLLNHIDKK FTIYFQ F+VIV C  R++SVTVTKDMTILEFRKECFKKIGEQIN+ L+LF+GESLDYE                            + +LTLGFYE+ P SV+ L   V+GGFIY++
Sbjct:    1 MSVEILYRNEIFTQEVSTDMSVKVLKEKLAEIKLLNIADFALKIDQLLLLEDKPVHKYLNTEFSLTDNQKYIKLEINDLTFAIKITEKSREISLEATAEISIGDLKNKIMNKLKLTGAQWSMKKNNEIIDDKDSLLNHIDKKMFTIYFQPFIVIVKCAGRSHSVTVTKDMTILEFRKECFKKIGEQINDLLVLFDGESLDYE----------------------------RPDLTLGFYEIGPGSVVELASNVRGGFIYII 233
[Close]
BLAST of SMED30006541 vs. Planmine SMEST
Match: SMESG000058954.1 (SMESG000058954.1)

HSP 1 Score: 374.015 bits (959), Expect = 9.734e-132
Identity = 186/187 (99.47%), Postives = 186/187 (99.47%), Query Frame = 3 
Query:  330 DLTFAIKITEKSREISLEATAEISIGDLKNKIMNKLKLTGAQWSMKKNNEIIDDKDSLLNHIDKKRFTIYFQTFVVIVNCVDRNYSVTVTKDMTILEFRKECFKKIGEQINEFLILFNGESLDYEKVITLEDLVVGILFNIDVINIHQTEKVKKDNLTLGFYEVVPNSVLVLVPKVKGGFIYMMSHE 890
            DLTFAIKITEKSREISLEATAEISIGDLKNKIMNKLKLTGAQWSMKKNNEIIDDKDSLLNHIDKKRFTIYFQTFVVIVNCVDRNYSVTVTKDMTILEFRKECFKKIGEQINEFLILFNGESLDYEKVITLEDL VGILFNIDVINIHQTEKVKKDNLTLGFYEVVPNSVLVLVPKVKGGFIYMMSHE
Sbjct:   23 DLTFAIKITEKSREISLEATAEISIGDLKNKIMNKLKLTGAQWSMKKNNEIIDDKDSLLNHIDKKRFTIYFQTFVVIVNCVDRNYSVTVTKDMTILEFRKECFKKIGEQINEFLILFNGESLDYEKVITLEDLFVGILFNIDVINIHQTEKVKKDNLTLGFYEVVPNSVLVLVPKVKGGFIYMMSHE 209
[Close]
BLAST of SMED30006541 vs. Planmine SMEST
Match: SMESG000058958.1 (SMESG000058958.1)

HSP 1 Score: 355.525 bits (911), Expect = 2.749e-124
Identity = 182/242 (75.21%), Postives = 199/242 (82.23%), Query Frame = 3 
Query:  156 MSVKMLREKLAEIKSLNIADFSLKIDQLLLLEDKPVHKYLNTEFSLTDNGKYIKIEINDLTFAIKITEKSREISLEATAEISIGDLKNKIMNKLKLTGAQWSMKKNNEIIDDKDSLLNHIDKKRFTIYFQTFVVIVNCVDRNYSVTVTKDMTILEFRKECFKKIGEQINEFLILFNGESLDYEKVITLEDLVVGILFNIDVINIHQTEKVKKDNLTLGFYEVVPNSVLVLVPKVKGGFIYMM 881
            MSVK+L+EKLAEIK LNIADF+LKIDQLLLLEDKPVHKYLNTEFSLTDN KYIK+EINDLTFAIKITEKSREISLEATAEISIGDLKNKIMNKLKLTGAQWSMKKNNEIIDDKDSLLNHIDKK FTIYFQ F+VIV C  R++SVTVTKDMTILEFRKECFKKIGEQIN+ L+LF+GESLDYE                            + +LTLGFYE+ P SV+ L   V+GGFIY++
Sbjct:    1 MSVKVLKEKLAEIKLLNIADFALKIDQLLLLEDKPVHKYLNTEFSLTDNQKYIKLEINDLTFAIKITEKSREISLEATAEISIGDLKNKIMNKLKLTGAQWSMKKNNEIIDDKDSLLNHIDKKMFTIYFQPFIVIVKCAGRSHSVTVTKDMTILEFRKECFKKIGEQINDLLVLFDGESLDYE----------------------------RPDLTLGFYEIGPGSVVELASNVRGGFIYII 214
[Close]
BLAST of SMED30006541 vs. Planmine SMEST
Match: SMESG000058973.1 (SMESG000058973.1)

HSP 1 Score: 100.523 bits (249), Expect = 1.478e-24
Identity = 79/262 (30.15%), Postives = 137/262 (52.29%), Query Frame = 3 
Query:   99 MSVEILYRNEIFTQEVSTDMSVKMLREKLAEIKSLNIADFSLKIDQLLLLEDKPVHKYLNTEFSLTDNGKYIKIEINDLT--FAIKITEKSREISLEATAEISIGDLKNKIMNKLKLTGAQWSMKKNNEIIDDKDSLLNHIDKKRF-TIYFQTFVVIVNCVDRNYSVTVTKDMTILEFRKECFKKIGEQINEFLILFNGESLD---YEKVITLEDLVVGILFNIDVINIHQTEKVKKDNLTLGFYEVVPNSVLVLVPKVKGG 866
            MS+ + + N  +++ V+T M+V  L+ +++    +++ DF LK++  L+ E++ V   L T+F LT+N   + I INDLT  F + I     +I L+A +  SI DLK  I   +K+    W MK ++ I+ D   L N I+ K    I  + F V V    RNY V+  +D TI EF+    +KIG  ++ F + FNG+S++   + K      L    LF  ++        V  + + L  +E+  N+++ ++ + +GG
Sbjct:    1 MSINLTFDNFTYSETVTTTMTVSELKLRVSSKIKMDVKDFLLKVNNTLMKEEQLVVSLLFTDFVLTNNTNVLNIRINDLTYDFVMDIPNSEEKIHLKANSNSSILDLKIIISENIKINLKTWKMKISDNILKDIMLLTNCIEVKTIQVIANEEFDVHVINDKRNYKVSTKRDTTITEFKLAVSEKIGLPVDTFYMTFNGQSIENVRHRKFSLKSGLFFKNLFRSNISITKPVVNVVGEQMVLESFEINKNAIIHVIMRTRGG 262
[Close]
BLAST of SMED30006541 vs. Planmine SMEST
Match: SMESG000058973.1 (SMESG000058973.1)

HSP 1 Score: 100.523 bits (249), Expect = 1.614e-24
Identity = 79/262 (30.15%), Postives = 137/262 (52.29%), Query Frame = 3 
Query:   99 MSVEILYRNEIFTQEVSTDMSVKMLREKLAEIKSLNIADFSLKIDQLLLLEDKPVHKYLNTEFSLTDNGKYIKIEINDLT--FAIKITEKSREISLEATAEISIGDLKNKIMNKLKLTGAQWSMKKNNEIIDDKDSLLNHIDKKRF-TIYFQTFVVIVNCVDRNYSVTVTKDMTILEFRKECFKKIGEQINEFLILFNGESLD---YEKVITLEDLVVGILFNIDVINIHQTEKVKKDNLTLGFYEVVPNSVLVLVPKVKGG 866
            MS+ + + N  +++ V+T M+V  L+ +++    +++ DF LK++  L+ E++ V   L T+F LT+N   + I INDLT  F + I     +I L+A +  SI DLK  I   +K+    W MK ++ I+ D   L N I+ K    I  + F V V    RNY V+  +D TI EF+    +KIG  ++ F + FNG+S++   + K      L    LF  ++        V  + + L  +E+  N+++ ++ + +GG
Sbjct:    5 MSINLTFDNFTYSETVTTTMTVSELKLRVSSKIKMDVKDFLLKVNNTLMKEEQLVVSLLFTDFVLTNNTNVLNIRINDLTYDFVMDIPNSEEKIHLKANSNSSILDLKIIISENIKINLKTWKMKISDNILKDIMLLTNCIEVKTIQVIANEEFDVHVINDKRNYKVSTKRDTTITEFKLAVSEKIGLPVDTFYMTFNGQSIENVRHRKFSLKSGLFFKNLFRSNISITKPVVNVVGEQMVLESFEINKNAIIHVIMRTRGG 266
The following BLAST results are available for this feature:
BLAST of SMED30006541 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30006541 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30006541 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30006541 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30006541 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30006541 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30006541 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30006541 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30006541 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30006541 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30006541 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30006541 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30006541 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30006541 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000058958.15.594e-13977.01SMESG000058958.1[more]
SMESG000058954.19.734e-13299.47SMESG000058954.1[more]
SMESG000058958.12.749e-12475.21SMESG000058958.1[more]
SMESG000058973.11.478e-2430.15SMESG000058973.1[more]
SMESG000058973.11.614e-2430.15SMESG000058973.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30006541 ID=SMED30006541|Name=SMED30006541|organism=Schmidtea mediterranea sexual|type=transcript|length=984bp
CTCAAATGTAGGTTAAAAGTGAAAACTCTATAAATCAAATTTGATTGGTC
GACTGGATCCGCATTTTATATTATTGAATTGATTTAAAATTTGTTTAAAT
GTCTGTTGAAATTTTATATAGAAATGAAATATTTACGCAAGAAGTTTCCA
CAGATATGTCGGTGAAAATGTTAAGAGAAAAATTGGCAGAAATTAAGTCA
TTAAATATTGCAGACTTTTCACTGAAAATAGATCAGTTATTGTTGTTGGA
AGATAAGCCGGTCCACAAATATCTTAATACTGAGTTTTCTCTTACTGATA
ATGGAAAATATATAAAAATAGAAATAAATGATTTGACATTCGCCATAAAA
ATTACAGAAAAATCCCGGGAAATCTCCCTTGAAGCAACAGCTGAAATTTC
AATTGGGGATTTGAAAAATAAAATCATGAATAAATTAAAGCTTACCGGAG
CGCAATGGTCAATGAAAAAGAACAACGAGATCATTGATGATAAAGACAGT
TTATTGAATCATATTGATAAGAAAAGGTTTACAATATATTTCCAAACATT
TGTTGTCATAGTTAATTGTGTTGATCGGAACTATTCTGTGACCGTGACCA
AGGACATGACTATTCTCGAATTCAGAAAAGAGTGCTTTAAAAAAATTGGC
GAACAAATAAATGAATTTTTAATTTTATTCAATGGCGAATCTCTAGATTA
TGAGAAAGTAATCACGTTAGAGGATTTGGTTGTTGGAATTTTATTTAACA
TTGATGTTATAAACATTCATCAAACTGAAAAGGTAAAGAAAGATAACTTA
ACATTGGGATTTTATGAAGTTGTACCAAATTCGGTGTTGGTCTTGGTTCC
GAAGGTGAAAGGCGGTTTCATTTATATGATGTCACATGAATAAGAAATTT
ATTTACCAGATTTGTACTGCAATTCAAAATATTCATAAAATAGAACTTTT
CATTTTATTAAATAAATGTTGATTGTTAAAAAAA
back to top

protein sequence of SMED30006541-orf-1

>SMED30006541-orf-1 ID=SMED30006541-orf-1|Name=SMED30006541-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=265bp
MSVEILYRNEIFTQEVSTDMSVKMLREKLAEIKSLNIADFSLKIDQLLLL
EDKPVHKYLNTEFSLTDNGKYIKIEINDLTFAIKITEKSREISLEATAEI
SIGDLKNKIMNKLKLTGAQWSMKKNNEIIDDKDSLLNHIDKKRFTIYFQT
FVVIVNCVDRNYSVTVTKDMTILEFRKECFKKIGEQINEFLILFNGESLD
YEKVITLEDLVVGILFNIDVINIHQTEKVKKDNLTLGFYEVVPNSVLVLV
PKVKGGFIYMMSHE*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000012neural progenitor cell
PLANA:0000016pharynx
PLANA:0000020protonephridia
PLANA:0000034epidermis
PLANA:0000070intestinal phagocyte
PLANA:0000099neuron
PLANA:0000110pharynx progenitor cell
PLANA:0000429neoblast
PLANA:0000463cholinergic neuron
PLANA:0000484secretory system
PLANA:0002032epidermal cell
PLANA:0003117parapharyngeal cell
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-like_domsf
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029071Ubiquitin-like domain superfamilySUPERFAMILYSSF54236Ubiquitin-likecoord: 149..256