SMED30006507

Overview
NameSMED30006507
Smed IDSMED30006507
Length (bp)3442
Neoblast Clusters

Zeng et. al., 2018



 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30006507

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 3

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
reproductive organSMED30006507SMESG000011746.1 Contig27145newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30006507SMESG000011746.1 Contig27145uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
testis primordiumSMED30006507SMESG000011746.1 Contig6098_SE3GPL10652PMID:20844018
Wang et al., 2010		whole organism juvenile cDNA to DNA expression microarray evidence
Note: Hover over icons to view figure legend
Alignments
SMED30006507 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.001699:31910..35343 -17161
Homology
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BLAST of SMED30006507 vs. Planmine SMEST
Match: SMESG000011746.1 (SMESG000011746.1)

HSP 1 Score: 1209.13 bits (3127), Expect = 0.000e+0
Identity = 662/678 (97.64%), Postives = 662/678 (97.64%), Query Frame = 2 
Query: 1319 MNEMQIKDKICLELMIDLMSEEIEKLLPLYGEWRKTSMKSDFSAYFNKYFKNTXXXXXXXXXXXXXXXXGXXXXXXXXXXYETKSVTNQVERVSLSKRNSKINLPKISNSSEDTVNDEIIERVPDIKNTVDNQRSYNDPSIITNSRVKKTMNAISQSAVEQNLTKQSISKESRRQLLPLEIQGEHPILKRNLDVSLIRELNNQTQLWQKPVNAGKDSIRDLIEFIINTIAQDKETSKELYGXXXXXXXXXXXXXXXXXAKNLHDCRVSNDDLSSLCYEILSEIIYDEMAIARYMFQSLDVKGIDNTMLGKLFRSYTNENTGIRQNFKPLPAGEKYAHLTSEVMNYNEGSKSKFKKRMSELDADSTQQKGVPKISPGVPAARRGFSQTSLSEDVKSSLETPIKFPTLIGKQNRSNQDDISYSGGSXXXXXXXXXXXXXTNEINKIKETLQVLSGCVEDKLSGWTCNYINGKPNKTNTEIYDDKNKFNYGKTTNLYNTQEVVEPPVDLMKNIQPSEHLSTSETGLNATRIESKSYIAPISSQTIEQKVKTPQASKKSFSNDEVDFDLLQLIADGAHNFLESKQVFTKIPNKFQRTDSCKSFNTEFDKIFEWICDKYQESLSLMMGNSASRTIVEALNTASLEEKRKIERELINRIIEQNNFSINNWVKDICFQKVLNCLS 3352
            MNEMQIKDKICLELMIDLMSEEIEKLLPLYGEWRKTSMKSDFSAYFNKYFKNTISPDNSIENSSENSIEGTTTTTTTTTTYETKSVTNQVERVSLSKRNSKINLPKISNSSEDTVNDEIIERVPDIKNTVDNQRSYNDPSIITNSRVKKTMNAISQSAVEQNLTKQSISKESRRQLLPLEIQGEHPILKRNLDVSLIRELNNQTQLWQKPVNAGKDSIRDLIEFIINTIAQDKETSKELYGEIISELNRLENELLLSLAKNLHDCRVSNDDLSSLCYEILSEIIYDEMAIARYMFQSLDVKGIDNTMLGKLFRSYTNENTGIRQNFKPLPAG                SKSKFKKRMSELDADSTQQKGVPKISPGVPAARRGFSQTSLSEDVKSSLETPIKFPTLIGKQNRSNQDDISYSGGSNQLLLIINKLNNQTNEINKIKETLQVLSGCVEDKLSGWTCNYINGKPNKTNTEIYDDKNKFNYGKTTNLYNTQEVVEPPVDLMKNIQPSEHLSTSETGLNATRIESKSYIAPISSQTIEQKVKTPQASKKSFSNDEVDFDLLQLIADGAHNFLESKQVFTKIPNKFQRTDSCKSFNTEFDKIFEWICDKYQESLSLMMGNSASRTIVEALNTASLEEKRKIERELINRIIEQNNFSINNWVKDICFQKVLNCLS
Sbjct:    1 MNEMQIKDKICLELMIDLMSEEIEKLLPLYGEWRKTSMKSDFSAYFNKYFKNTISPDNSIENSSENSIEGTTTTTTTTTTYETKSVTNQVERVSLSKRNSKINLPKISNSSEDTVNDEIIERVPDIKNTVDNQRSYNDPSIITNSRVKKTMNAISQSAVEQNLTKQSISKESRRQLLPLEIQGEHPILKRNLDVSLIRELNNQTQLWQKPVNAGKDSIRDLIEFIINTIAQDKETSKELYGEIISELNRLENELLLSLAKNLHDCRVSNDDLSSLCYEILSEIIYDEMAIARYMFQSLDVKGIDNTMLGKLFRSYTNENTGIRQNFKPLPAG----------------SKSKFKKRMSELDADSTQQKGVPKISPGVPAARRGFSQTSLSEDVKSSLETPIKFPTLIGKQNRSNQDDISYSGGSNQLLLIINKLNNQTNEINKIKETLQVLSGCVEDKLSGWTCNYINGKPNKTNTEIYDDKNKFNYGKTTNLYNTQEVVEPPVDLMKNIQPSEHLSTSETGLNATRIESKSYIAPISSQTIEQKVKTPQASKKSFSNDEVDFDLLQLIADGAHNFLESKQVFTKIPNKFQRTDSCKSFNTEFDKIFEWICDKYQESLSLMMGNSASRTIVEALNTASLEEKRKIERELINRIIEQNNFSINNWVKDICFQKVLNCLS 662
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BLAST of SMED30006507 vs. Planmine SMEST
Match: SMESG000011746.1 (SMESG000011746.1)

HSP 1 Score: 1179.08 bits (3049), Expect = 0.000e+0
Identity = 648/664 (97.59%), Postives = 648/664 (97.59%), Query Frame = 2 
Query: 1361 MIDLMSEEIEKLLPLYGEWRKTSMKSDFSAYFNKYFKNTXXXXXXXXXXXXXXXXGXXXXXXXXXXYETKSVTNQVERVSLSKRNSKINLPKISNSSEDTVNDEIIERVPDIKNTVDNQRSYNDPSIITNSRVKKTMNAISQSAVEQNLTKQSISKESRRQLLPLEIQGEHPILKRNLDVSLIRELNNQTQLWQKPVNAGKDSIRDLIEFIINTIAQDKETSKELYGXXXXXXXXXXXXXXXXXAKNLHDCRVSNDDLSSLCYEILSEIIYDEMAIARYMFQSLDVKGIDNTMLGKLFRSYTNENTGIRQNFKPLPAGEKYAHLTSEVMNYNEGSKSKFKKRMSELDADSTQQKGVPKISPGVPAARRGFSQTSLSEDVKSSLETPIKFPTLIGKQNRSNQDDISYSGGSXXXXXXXXXXXXXTNEINKIKETLQVLSGCVEDKLSGWTCNYINGKPNKTNTEIYDDKNKFNYGKTTNLYNTQEVVEPPVDLMKNIQPSEHLSTSETGLNATRIESKSYIAPISSQTIEQKVKTPQASKKSFSNDEVDFDLLQLIADGAHNFLESKQVFTKIPNKFQRTDSCKSFNTEFDKIFEWICDKYQESLSLMMGNSASRTIVEALNTASLEEKRKIERELINRIIEQNNFSINNWVKDICFQKVLNCLS 3352
            MIDLMSEEIEKLLPLYGEWRKTSMKSDFSAYFNKYFKNTISPDNSIENSSENSIEGTTTTTTTTTTYETKSVTNQVERVSLSKRNSKINLPKISNSSEDTVNDEIIERVPDIKNTVDNQRSYNDPSIITNSRVKKTMNAISQSAVEQNLTKQSISKESRRQLLPLEIQGEHPILKRNLDVSLIRELNNQTQLWQKPVNAGKDSIRDLIEFIINTIAQDKETSKELYGEIISELNRLENELLLSLAKNLHDCRVSNDDLSSLCYEILSEIIYDEMAIARYMFQSLDVKGIDNTMLGKLFRSYTNENTGIRQNFKPLPAG                SKSKFKKRMSELDADSTQQKGVPKISPGVPAARRGFSQTSLSEDVKSSLETPIKFPTLIGKQNRSNQDDISYSGGSNQLLLIINKLNNQTNEINKIKETLQVLSGCVEDKLSGWTCNYINGKPNKTNTEIYDDKNKFNYGKTTNLYNTQEVVEPPVDLMKNIQPSEHLSTSETGLNATRIESKSYIAPISSQTIEQKVKTPQASKKSFSNDEVDFDLLQLIADGAHNFLESKQVFTKIPNKFQRTDSCKSFNTEFDKIFEWICDKYQESLSLMMGNSASRTIVEALNTASLEEKRKIERELINRIIEQNNFSINNWVKDICFQKVLNCLS
Sbjct:    1 MIDLMSEEIEKLLPLYGEWRKTSMKSDFSAYFNKYFKNTISPDNSIENSSENSIEGTTTTTTTTTTYETKSVTNQVERVSLSKRNSKINLPKISNSSEDTVNDEIIERVPDIKNTVDNQRSYNDPSIITNSRVKKTMNAISQSAVEQNLTKQSISKESRRQLLPLEIQGEHPILKRNLDVSLIRELNNQTQLWQKPVNAGKDSIRDLIEFIINTIAQDKETSKELYGEIISELNRLENELLLSLAKNLHDCRVSNDDLSSLCYEILSEIIYDEMAIARYMFQSLDVKGIDNTMLGKLFRSYTNENTGIRQNFKPLPAG----------------SKSKFKKRMSELDADSTQQKGVPKISPGVPAARRGFSQTSLSEDVKSSLETPIKFPTLIGKQNRSNQDDISYSGGSNQLLLIINKLNNQTNEINKIKETLQVLSGCVEDKLSGWTCNYINGKPNKTNTEIYDDKNKFNYGKTTNLYNTQEVVEPPVDLMKNIQPSEHLSTSETGLNATRIESKSYIAPISSQTIEQKVKTPQASKKSFSNDEVDFDLLQLIADGAHNFLESKQVFTKIPNKFQRTDSCKSFNTEFDKIFEWICDKYQESLSLMMGNSASRTIVEALNTASLEEKRKIERELINRIIEQNNFSINNWVKDICFQKVLNCLS 648
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BLAST of SMED30006507 vs. Planmine SMEST
Match: SMESG000011746.1 (SMESG000011746.1)

HSP 1 Score: 1172.15 bits (3031), Expect = 0.000e+0
Identity = 644/660 (97.58%), Postives = 644/660 (97.58%), Query Frame = 2 
Query: 1373 MSEEIEKLLPLYGEWRKTSMKSDFSAYFNKYFKNTXXXXXXXXXXXXXXXXGXXXXXXXXXXYETKSVTNQVERVSLSKRNSKINLPKISNSSEDTVNDEIIERVPDIKNTVDNQRSYNDPSIITNSRVKKTMNAISQSAVEQNLTKQSISKESRRQLLPLEIQGEHPILKRNLDVSLIRELNNQTQLWQKPVNAGKDSIRDLIEFIINTIAQDKETSKELYGXXXXXXXXXXXXXXXXXAKNLHDCRVSNDDLSSLCYEILSEIIYDEMAIARYMFQSLDVKGIDNTMLGKLFRSYTNENTGIRQNFKPLPAGEKYAHLTSEVMNYNEGSKSKFKKRMSELDADSTQQKGVPKISPGVPAARRGFSQTSLSEDVKSSLETPIKFPTLIGKQNRSNQDDISYSGGSXXXXXXXXXXXXXTNEINKIKETLQVLSGCVEDKLSGWTCNYINGKPNKTNTEIYDDKNKFNYGKTTNLYNTQEVVEPPVDLMKNIQPSEHLSTSETGLNATRIESKSYIAPISSQTIEQKVKTPQASKKSFSNDEVDFDLLQLIADGAHNFLESKQVFTKIPNKFQRTDSCKSFNTEFDKIFEWICDKYQESLSLMMGNSASRTIVEALNTASLEEKRKIERELINRIIEQNNFSINNWVKDICFQKVLNCLS 3352
            MSEEIEKLLPLYGEWRKTSMKSDFSAYFNKYFKNTISPDNSIENSSENSIEGTTTTTTTTTTYETKSVTNQVERVSLSKRNSKINLPKISNSSEDTVNDEIIERVPDIKNTVDNQRSYNDPSIITNSRVKKTMNAISQSAVEQNLTKQSISKESRRQLLPLEIQGEHPILKRNLDVSLIRELNNQTQLWQKPVNAGKDSIRDLIEFIINTIAQDKETSKELYGEIISELNRLENELLLSLAKNLHDCRVSNDDLSSLCYEILSEIIYDEMAIARYMFQSLDVKGIDNTMLGKLFRSYTNENTGIRQNFKPLPAG                SKSKFKKRMSELDADSTQQKGVPKISPGVPAARRGFSQTSLSEDVKSSLETPIKFPTLIGKQNRSNQDDISYSGGSNQLLLIINKLNNQTNEINKIKETLQVLSGCVEDKLSGWTCNYINGKPNKTNTEIYDDKNKFNYGKTTNLYNTQEVVEPPVDLMKNIQPSEHLSTSETGLNATRIESKSYIAPISSQTIEQKVKTPQASKKSFSNDEVDFDLLQLIADGAHNFLESKQVFTKIPNKFQRTDSCKSFNTEFDKIFEWICDKYQESLSLMMGNSASRTIVEALNTASLEEKRKIERELINRIIEQNNFSINNWVKDICFQKVLNCLS
Sbjct:    1 MSEEIEKLLPLYGEWRKTSMKSDFSAYFNKYFKNTISPDNSIENSSENSIEGTTTTTTTTTTYETKSVTNQVERVSLSKRNSKINLPKISNSSEDTVNDEIIERVPDIKNTVDNQRSYNDPSIITNSRVKKTMNAISQSAVEQNLTKQSISKESRRQLLPLEIQGEHPILKRNLDVSLIRELNNQTQLWQKPVNAGKDSIRDLIEFIINTIAQDKETSKELYGEIISELNRLENELLLSLAKNLHDCRVSNDDLSSLCYEILSEIIYDEMAIARYMFQSLDVKGIDNTMLGKLFRSYTNENTGIRQNFKPLPAG----------------SKSKFKKRMSELDADSTQQKGVPKISPGVPAARRGFSQTSLSEDVKSSLETPIKFPTLIGKQNRSNQDDISYSGGSNQLLLIINKLNNQTNEINKIKETLQVLSGCVEDKLSGWTCNYINGKPNKTNTEIYDDKNKFNYGKTTNLYNTQEVVEPPVDLMKNIQPSEHLSTSETGLNATRIESKSYIAPISSQTIEQKVKTPQASKKSFSNDEVDFDLLQLIADGAHNFLESKQVFTKIPNKFQRTDSCKSFNTEFDKIFEWICDKYQESLSLMMGNSASRTIVEALNTASLEEKRKIERELINRIIEQNNFSINNWVKDICFQKVLNCLS 644
[Close]
BLAST of SMED30006507 vs. Planmine SMEST
Match: SMESG000011748.1 (SMESG000011748.1)

HSP 1 Score: 626.32 bits (1614), Expect = 0.000e+0
Identity = 341/342 (99.71%), Postives = 342/342 (100.00%), Query Frame = 2 
Query:   59 MSNENHQTISSKNGVIYFSNSKDSLPYKTYINMQQEFWRHQLNLSKKHSQFSNNLSNDPRNKGSTKSNTSSLEISNAIDSTANSSATLKFKKLNLPSHDSANQLXXXXXXXXXXXXXXXKLMTTSHAFPMSVDMSTQFNSDMKIIIEQDVKDKNVVNIRXXXXXXXXXXXXXIIPQDTLRSILNETMKDQKPDDRRASVIINQNKESTKVIKTNTMSNKTRNSSGSEESVGYFATENPVEPNVIKASEGPIEKLPKGPDVLSTIFRTDSKVNSVSKFGTTVRKSQIYEPITDGQPGQSLMPSMSNYASNKSASTVPAVLPTCIVRRIVRAMITDLELPKNVV 1084
            MSNENHQTISSKNGVIYFSNSKDSLPYKTYINMQQEFWRHQLNLSKKHSQFSNNLSNDPRNKGSTKSNTSSLEISNAIDSTANSSATLKFKKLNLPSHDSANQLNTSENNDDTNEDFNSKLMTTSHAFPMSVDMSTQFNSDMKIIIEQDVKDKNVVNIRFGGTFTGAMTGTGIIPQDTLRSILNETMKDQKPDDRRASVIINQNKESTKVIKTNTMSNKTRNSSGSEESVGYFATENPVEPNVIKASEGPIEKLPKGPDVLSTIFRTDSKVNSVSKFGTTVRKSQIYEPITDGQPGQSLMPSMSNYASNKSASTVPAVLPTCIVRRIVRAMITDLELPKNV+
Sbjct:    1 MSNENHQTISSKNGVIYFSNSKDSLPYKTYINMQQEFWRHQLNLSKKHSQFSNNLSNDPRNKGSTKSNTSSLEISNAIDSTANSSATLKFKKLNLPSHDSANQLNTSENNDDTNEDFNSKLMTTSHAFPMSVDMSTQFNSDMKIIIEQDVKDKNVVNIRFGGTFTGAMTGTGIIPQDTLRSILNETMKDQKPDDRRASVIINQNKESTKVIKTNTMSNKTRNSSGSEESVGYFATENPVEPNVIKASEGPIEKLPKGPDVLSTIFRTDSKVNSVSKFGTTVRKSQIYEPITDGQPGQSLMPSMSNYASNKSASTVPAVLPTCIVRRIVRAMITDLELPKNVI 342
The following BLAST results are available for this feature:
BLAST of SMED30006507 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006507 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006507 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006507 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006507 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006507 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006507 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006507 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006507 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006507 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006507 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006507 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006507 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006507 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4
Match NameE-valueIdentityDescription
SMESG000011746.10.000e+097.64SMESG000011746.1[more]
SMESG000011746.10.000e+097.59SMESG000011746.1[more]
SMESG000011746.10.000e+097.58SMESG000011746.1[more]
SMESG000011748.10.000e+099.71SMESG000011748.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30006507 ID=SMED30006507|Name=SMED30006507|organism=Schmidtea mediterranea sexual|type=transcript|length=3442bp
TCTATAATTGATATCCATTTAATATTCTATAATAAATTTGCTTTCTCCCA
TCTGCTGTATGTCGAATGAGAACCACCAAACAATAAGTTCCAAGAATGGA
GTCATCTATTTCAGCAATTCCAAAGATTCTTTGCCTTACAAGACTTACAT
TAACATGCAACAAGAATTTTGGCGGCATCAGTTGAACTTATCCAAAAAAC
ATTCTCAATTTAGTAACAACTTGAGTAATGACCCTCGAAATAAAGGTTCG
ACAAAATCTAATACCTCCTCACTAGAGATCTCCAATGCAATTGACAGCAC
TGCCAATTCAAGTGCAACTTTGAAATTCAAAAAGTTAAATCTTCCAAGTC
ATGACTCCGCAAACCAATTAAATACGAGTGAAAACAATGATGATACCAAT
GAAGATTTCAATTCGAAATTGATGACGACGTCTCATGCGTTTCCGATGAG
TGTTGACATGTCGACCCAGTTTAACAGTGACATGAAAATTATAATTGAAC
AAGATGTTAAAGACAAAAATGTTGTTAATATCAGATTTGGAGGAACATTT
ACTGGTGCCATGACCGGCACAGGGATTATTCCACAAGACACTCTGAGGTC
TATATTGAATGAGACAATGAAAGACCAAAAGCCTGACGATAGAAGAGCCT
CGGTAATAATTAATCAGAACAAAGAATCAACAAAAGTAATTAAAACAAAT
ACAATGTCAAATAAAACAAGGAACTCTAGTGGCAGTGAGGAATCTGTCGG
GTATTTTGCAACAGAAAATCCTGTGGAACCTAATGTTATCAAAGCAAGCG
AGGGACCGATAGAAAAGCTTCCTAAAGGTCCCGACGTTTTATCAACTATT
TTTAGAACCGATTCAAAAGTGAATTCGGTTTCCAAATTTGGTACTACAGT
GAGAAAATCACAAATTTATGAGCCAATTACGGATGGTCAACCTGGTCAAT
CTCTGATGCCTTCTATGTCTAATTATGCATCTAACAAATCCGCATCAACC
GTGCCAGCCGTTTTACCCACATGTATTGTTCGAAGGATTGTACGAGCAAT
GATAACGGATCTGGAGCTTCCTAAAAATGTAGTAAGAAGTCCCTTTAAAT
TAGAACTGAAAATAAAATCCTTAACAAATAGATTGGATATATTAAACCTC
AACTGGCATTCGGCAATAAAGCGAGGCAGGATAATGATAGGTGAACTTAT
AGAACTGATATTGTCAGTGAATGTTGATGGCTCTGGCAAGACTCCGAAAG
AAGTTCAGCAAATATTGCAGGATCTGAAGAATGAATTTATAGGATGTTGC
GTATATTTGGCAAAGCCAATGAATGAGATGCAAATTAAGGATAAAATATG
TCTAGAACTGATGATTGACTTGATGTCAGAAGAAATAGAAAAGCTTCTTC
CTCTCTATGGGGAATGGAGGAAAACAAGCATGAAATCTGATTTCAGTGCA
TATTTTAATAAGTATTTTAAGAATACAATATCTCCAGATAATTCTATTGA
AAATTCCAGTGAAAATTCCATTGAAGGGACAACAACTACAACAACGACAA
CGACAACATATGAAACGAAATCTGTCACTAATCAGGTAGAACGAGTCAGT
TTAAGTAAAAGGAATAGCAAAATAAACCTCCCAAAAATTTCAAACTCAAG
TGAAGATACAGTTAACGATGAAATTATTGAAAGAGTTCCTGATATTAAAA
ACACTGTTGACAACCAAAGGTCGTATAATGATCCTTCTATCATTACCAAT
AGTCGAGTTAAAAAAACAATGAATGCAATCTCACAGTCAGCAGTTGAACA
AAACCTCACCAAACAATCTATTTCCAAAGAGTCTCGCAGGCAATTGCTGC
CTTTGGAGATTCAGGGTGAACATCCAATTTTGAAAAGAAATCTAGACGTA
TCCTTAATACGGGAACTGAACAATCAAACGCAATTATGGCAAAAGCCAGT
CAATGCCGGCAAAGATAGCATTCGAGATCTTATAGAGTTTATCATTAATA
CTATCGCTCAAGATAAAGAAACATCGAAAGAGCTTTACGGGGAAATAATA
AGTGAACTCAACCGTTTAGAAAATGAACTGCTTTTATCCCTGGCAAAGAA
TTTGCATGACTGCCGAGTTTCTAACGACGATTTGAGTAGCCTATGTTATG
AAATACTATCTGAGATTATTTACGATGAAATGGCAATAGCAAGGTACATG
TTTCAATCATTAGACGTCAAAGGAATTGATAATACGATGCTGGGAAAGCT
ATTCAGGAGTTACACGAATGAAAATACAGGTATTCGCCAGAATTTCAAAC
CTCTACCCGCAGGTGAGAAGTATGCTCATTTGACCTCTGAAGTAATGAAC
TACAATGAAGGGTCGAAATCAAAATTCAAGAAAAGAATGTCAGAGCTGGA
TGCGGATTCTACCCAACAAAAGGGAGTACCAAAAATAAGCCCAGGGGTTC
CAGCTGCTAGAAGAGGATTTTCACAAACTTCCTTATCAGAAGACGTAAAA
TCAAGCCTTGAAACTCCGATTAAATTCCCAACTCTTATCGGCAAACAAAA
CAGATCCAATCAAGACGATATAAGCTATTCGGGAGGGAGCAATCAGTTGT
TGTTAATAATAAACAAACTTAATAATCAAACGAACGAAATCAACAAAATT
AAAGAAACTCTTCAAGTTTTGTCTGGTTGTGTCGAAGACAAGTTGTCAGG
TTGGACCTGCAATTACATCAATGGAAAGCCTAATAAAACCAATACAGAAA
TCTACGATGATAAAAACAAATTTAATTACGGTAAAACTACAAACCTTTAC
AATACTCAAGAGGTTGTTGAACCACCAGTTGATCTCATGAAAAACATTCA
ACCTTCAGAACATTTGTCGACCTCAGAAACAGGATTAAATGCAACAAGAA
TAGAAAGCAAGTCCTACATTGCTCCGATCTCCAGTCAGACAATTGAACAG
AAAGTTAAAACTCCACAAGCATCGAAAAAATCTTTCAGCAATGACGAAGT
CGATTTTGACTTGTTACAGCTGATTGCCGATGGGGCACATAATTTTTTGG
AATCAAAACAAGTCTTCACAAAGATTCCCAACAAATTCCAAAGAACCGAT
TCTTGTAAATCTTTCAACACGGAATTCGATAAGATCTTTGAATGGATATG
TGATAAATATCAGGAAAGTCTGAGTCTAATGATGGGAAATTCTGCCAGCA
GAACAATTGTGGAGGCGCTGAACACGGCATCGTTGGAAGAAAAAAGAAAA
ATTGAAAGGGAATTAATCAACAGAATTATTGAGCAAAACAATTTTTCAAT
CAACAATTGGGTGAAAGACATTTGTTTTCAGAAGGTTTTGAATTGCTTAT
CTTAGAATCATTTTTTTTGTTTATTTTGTTTATGAACTTTAAATTACAGA
CTTTTTATTTTTAATATATTTATTATTTTCGTTGCAAAAAAA
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protein sequence of SMED30006507-orf-1

>SMED30006507-orf-1 ID=SMED30006507-orf-1|Name=SMED30006507-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1099bp
MSNENHQTISSKNGVIYFSNSKDSLPYKTYINMQQEFWRHQLNLSKKHSQ
FSNNLSNDPRNKGSTKSNTSSLEISNAIDSTANSSATLKFKKLNLPSHDS
ANQLNTSENNDDTNEDFNSKLMTTSHAFPMSVDMSTQFNSDMKIIIEQDV
KDKNVVNIRFGGTFTGAMTGTGIIPQDTLRSILNETMKDQKPDDRRASVI
INQNKESTKVIKTNTMSNKTRNSSGSEESVGYFATENPVEPNVIKASEGP
IEKLPKGPDVLSTIFRTDSKVNSVSKFGTTVRKSQIYEPITDGQPGQSLM
PSMSNYASNKSASTVPAVLPTCIVRRIVRAMITDLELPKNVVRSPFKLEL
KIKSLTNRLDILNLNWHSAIKRGRIMIGELIELILSVNVDGSGKTPKEVQ
QILQDLKNEFIGCCVYLAKPMNEMQIKDKICLELMIDLMSEEIEKLLPLY
GEWRKTSMKSDFSAYFNKYFKNTISPDNSIENSSENSIEGTTTTTTTTTT
YETKSVTNQVERVSLSKRNSKINLPKISNSSEDTVNDEIIERVPDIKNTV
DNQRSYNDPSIITNSRVKKTMNAISQSAVEQNLTKQSISKESRRQLLPLE
IQGEHPILKRNLDVSLIRELNNQTQLWQKPVNAGKDSIRDLIEFIINTIA
QDKETSKELYGEIISELNRLENELLLSLAKNLHDCRVSNDDLSSLCYEIL
SEIIYDEMAIARYMFQSLDVKGIDNTMLGKLFRSYTNENTGIRQNFKPLP
AGEKYAHLTSEVMNYNEGSKSKFKKRMSELDADSTQQKGVPKISPGVPAA
RRGFSQTSLSEDVKSSLETPIKFPTLIGKQNRSNQDDISYSGGSNQLLLI
INKLNNQTNEINKIKETLQVLSGCVEDKLSGWTCNYINGKPNKTNTEIYD
DKNKFNYGKTTNLYNTQEVVEPPVDLMKNIQPSEHLSTSETGLNATRIES
KSYIAPISSQTIEQKVKTPQASKKSFSNDEVDFDLLQLIADGAHNFLESK
QVFTKIPNKFQRTDSCKSFNTEFDKIFEWICDKYQESLSLMMGNSASRTI
VEALNTASLEEKRKIERELINRIIEQNNFSINNWVKDICFQKVLNCLS*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002089reproductive organ
PLANA:0003304testis primordium
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 653..673
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..71