EGF-like domain-containing protein

Overview
NameEGF-like domain-containing protein
Smed IDSMED30006484
Length (bp)777
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of EGF-like domain-containing protein (SMED30006484) t-SNE clustered cells

Violin plots show distribution of expression levels for EGF-like domain-containing protein (SMED30006484) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of EGF-like domain-containing protein (SMED30006484) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for EGF-like domain-containing protein (SMED30006484) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30006484

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 10

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
gutSMED30006484h1SMcG0003293 Contig2869GPL15192PMID:23079596
Forsthoefel et al., 2012		whole organism asexual adult colorimetric in situ hybridization evidence
dorsal ventral margin of the whole animalSMED30006484h1SMcG0003293 Contig2869GPL15192PMID:23079596
Forsthoefel et al., 2012		whole organism asexual adult colorimetric in situ hybridization evidence
intestinal phagocyteSMED30006484h1SMcG0003293 Contig2869GPL15192PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
gutSMED30006484h1SMcG0017295 Contig2869GPL15192PMID:23079596
Forsthoefel et al., 2012		whole organism asexual adult colorimetric in situ hybridization evidence
dorsal ventral margin of the whole animalSMED30006484h1SMcG0017295 Contig2869GPL15192PMID:23079596
Forsthoefel et al., 2012		whole organism asexual adult colorimetric in situ hybridization evidence
intestinal phagocyteSMED30006484h1SMcG0017295 Contig2869GPL15192PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
nervous systemSMED30006484h1SMcG0017295 dd_Smed_v4_6055_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30006484h1SMcG0017295 dd_Smed_v4_6055_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30006484h1SMcG0017295 dd_Smed_v4_6055_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30006484h1SMcG0017295 dd_Smed_v4_6055_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of EGF-like domain-containing protein vs. Ensembl Human
Match: ATRAID (all-trans retinoic acid induced differentiation factor [Source:HGNC Symbol;Acc:HGNC:24090])

HSP 1 Score: 79.337 bits (194), Expect = 1.194e-17
Identity = 53/169 (31.36%), Postives = 78/169 (46.15%), Query Frame = 1 
Query:  169 VVHNFCC-NVGNTTVGLDLHLCQ-RDIFDNLIDNFKRDIKFMIMNGLQVNETTSFCGYHSLDLLEITNEKFCPGDISYWKNIVLQNDSITCQSQLNICGNQSSIT-CPKNSICFPNGPNCLTCNCMENYSGYKCLNKGKFPTNVFLYGWILSSVGAALVFLVIKIYFTR 666
            ++H  CC N   T +GLDL  C   D   N        I  +  N L+ +   +F G+  L  L +     CPG I+ W  I    D+  CQ Q N+C N      CP+N  C P+GP  L C C + + GYKC+ +G F   +F        +GA  + + I ++ T+
Sbjct:    1 MLHARCCLNQKGTILGLDLQNCSLEDPGPNFHQAHTTVIIDLQANPLKGDLANTFRGFTQLQTLILPQHVNCPGGINAWNTITSYIDNQICQGQKNLCNNTGDPEMCPENGSCVPDGPGLLQCVCADGFHGYKCMRQGSFSLLMF-----FGILGATTLSVSILLWATQ 164
[Close]
BLAST of EGF-like domain-containing protein vs. Ensembl Human
Match: ATRAID (all-trans retinoic acid induced differentiation factor [Source:HGNC Symbol;Acc:HGNC:24090])

HSP 1 Score: 79.337 bits (194), Expect = 4.048e-17
Identity = 54/169 (31.95%), Postives = 81/169 (47.93%), Query Frame = 1 
Query:  169 VVHNFCC-NVGNTTVGLDLHLCQ-RDIFDNLIDNFKRDIKFMIMNGLQVNETTSFCGYHSLDLLEITNEKFCPGDISYWKNIVLQNDSITCQSQLNICGNQSSIT-CPKNSICFPNGPNCLTCNCMENYSGYKCLNKGKFPTNVFLYGWILSSVGAALVFLVIKIYFTR 666
            ++H  CC N   T +GLDL  C   D   N        I  +  N L+ +   +F G+  L  L +     CPG I+ W  I    D+  CQ Q N+C N      CP+N  C P+GP  L C C + + GYKC+ +G F  ++ ++  IL   GA  + + I ++ T+
Sbjct:   59 MLHARCCLNQKGTILGLDLQNCSLEDPGPNFHQAHTTVIIDLQANPLKGDLANTFRGFTQLQTLILPQHVNCPGGINAWNTITSYIDNQICQGQKNLCNNTGDPEMCPENGSCVPDGPGLLQCVCADGFHGYKCMRQGSF--SLLMFFGIL---GATTLSVSILLWATQ 222
[Close]
BLAST of EGF-like domain-containing protein vs. Ensembl Human
Match: ATRAID (all-trans retinoic acid induced differentiation factor [Source:HGNC Symbol;Acc:HGNC:24090])

HSP 1 Score: 79.337 bits (194), Expect = 8.777e-17
Identity = 54/169 (31.95%), Postives = 81/169 (47.93%), Query Frame = 1 
Query:  169 VVHNFCC-NVGNTTVGLDLHLCQ-RDIFDNLIDNFKRDIKFMIMNGLQVNETTSFCGYHSLDLLEITNEKFCPGDISYWKNIVLQNDSITCQSQLNICGNQSSIT-CPKNSICFPNGPNCLTCNCMENYSGYKCLNKGKFPTNVFLYGWILSSVGAALVFLVIKIYFTR 666
            ++H  CC N   T +GLDL  C   D   N        I  +  N L+ +   +F G+  L  L +     CPG I+ W  I    D+  CQ Q N+C N      CP+N  C P+GP  L C C + + GYKC+ +G F  ++ ++  IL   GA  + + I ++ T+
Sbjct:  114 MLHARCCLNQKGTILGLDLQNCSLEDPGPNFHQAHTTVIIDLQANPLKGDLANTFRGFTQLQTLILPQHVNCPGGINAWNTITSYIDNQICQGQKNLCNNTGDPEMCPENGSCVPDGPGLLQCVCADGFHGYKCMRQGSF--SLLMFFGIL---GATTLSVSILLWATQ 277
[Close]
BLAST of EGF-like domain-containing protein vs. Ensembl Human
Match: ATRAID (all-trans retinoic acid induced differentiation factor [Source:HGNC Symbol;Acc:HGNC:24090])

HSP 1 Score: 79.337 bits (194), Expect = 8.777e-17
Identity = 54/169 (31.95%), Postives = 81/169 (47.93%), Query Frame = 1 
Query:  169 VVHNFCC-NVGNTTVGLDLHLCQ-RDIFDNLIDNFKRDIKFMIMNGLQVNETTSFCGYHSLDLLEITNEKFCPGDISYWKNIVLQNDSITCQSQLNICGNQSSIT-CPKNSICFPNGPNCLTCNCMENYSGYKCLNKGKFPTNVFLYGWILSSVGAALVFLVIKIYFTR 666
            ++H  CC N   T +GLDL  C   D   N        I  +  N L+ +   +F G+  L  L +     CPG I+ W  I    D+  CQ Q N+C N      CP+N  C P+GP  L C C + + GYKC+ +G F  ++ ++  IL   GA  + + I ++ T+
Sbjct:  114 MLHARCCLNQKGTILGLDLQNCSLEDPGPNFHQAHTTVIIDLQANPLKGDLANTFRGFTQLQTLILPQHVNCPGGINAWNTITSYIDNQICQGQKNLCNNTGDPEMCPENGSCVPDGPGLLQCVCADGFHGYKCMRQGSF--SLLMFFGIL---GATTLSVSILLWATQ 277
[Close]
BLAST of EGF-like domain-containing protein vs. Ensembl Zebrafish
Match: atraid (all-trans retinoic acid-induced differentiation factor [Source:NCBI gene;Acc:553468])

HSP 1 Score: 79.7221 bits (195), Expect = 1.591e-17
Identity = 51/177 (28.81%), Postives = 87/177 (49.15%), Query Frame = 1 
Query:  157 IHSGVVHNFCCNVGNTT-----VGLDLHLCQRDIFDNLIDNFKRDIKFMIMNGLQVNETTSFCGYHSLDLLEITNEKFCPGDISYWKNIVLQNDSITCQSQLNICGN--QSSITCPKNSICFPNGPNCLTCNCMENYSGYKCLNKGKFPTNVFLYGWILSSVGAALVFLVIKIYFTR 666
            I  G V   CC   NT+     +GLDL  C     ++L ++    I  +  N +       F G+  L  L + ++  CPG  + W+ + +++ +  C+ Q N C    Q  + CP+NS+C P GP    C+C+ N+ GYKC+ +G+FP        +L  + A+ V +   ++FT+
Sbjct:   52 ITKGYVKGHCCFKNNTSDVDTIIGLDLSNCSISHVEHLYNSSTALIIDLSNNPISNLSDYVFQGFSQLTQLLLPSKLECPGGRASWEKVEVKSITRICEGQKNACNQTVQMPLVCPENSLCSPYGPGFFECSCLNNFHGYKCMRQGEFP-----LVKVLGILTASTVVVSSVLWFTQ 223
[Close]
BLAST of EGF-like domain-containing protein vs. Ensembl Xenopus
Match: atraid (all-trans retinoic acid induced differentiation factor [Source:NCBI gene;Acc:496775])

HSP 1 Score: 72.7886 bits (177), Expect = 5.605e-15
Identity = 47/143 (32.87%), Postives = 69/143 (48.25%), Query Frame = 1 
Query:  220 LHLCQRDIFDNLIDNFKRDIKFMIMNGLQVNETTSFCGYHSLDLLEITNEKFCPGDISYWKNIVLQNDSITCQSQLNICGNQSS-ITCPKNSICFPNGPNCLTCNCMENYSGYKCLNKGKFPTNVFLYGWILSSVGAALVFLV 645
            LHL Q  +  +L  N  RD+      GL             L  + +  E  CPG  + W+N+ + +    CQ Q + C + S  + CP+NS+C P+GP  + C C   + GYKCL +  FP  +F +G IL  V A L  L+
Sbjct:   58 LHLTQAAVVLDLSSNPLRDLPSEFFRGLL-----------GLQYVALPAELSCPGGNNSWENVNVTSAVRVCQDQRSSCNSTSEWVLCPENSVCAPDGPGYMQCVCAPGFHGYKCLRESTFPILMF-FG-ILGLVTACLSVLL 187
[Close]
BLAST of EGF-like domain-containing protein vs. Ensembl Xenopus
Match: atraid (all-trans retinoic acid induced differentiation factor [Source:NCBI gene;Acc:496775])

HSP 1 Score: 72.7886 bits (177), Expect = 7.539e-15
Identity = 45/143 (31.47%), Postives = 68/143 (47.55%), Query Frame = 1 
Query:  220 LHLCQRDIFDNLIDNFKRDIKFMIMNGLQVNETTSFCGYHSLDLLEITNEKFCPGDISYWKNIVLQNDSITCQSQLNICGNQSS-ITCPKNSICFPNGPNCLTCNCMENYSGYKCLNKGKFPTNVFLYGWILSSVGAALVFLV 645
            LHL Q  +  +L  N  RD+      GL             L  + +  E  CPG  + W+N+ + +    CQ Q + C + S  + CP+NS+C P+GP  + C C   + GYKCL +  FP  + ++  IL  V A L  L+
Sbjct:   78 LHLTQAAVVLDLSSNPLRDLPSEFFRGLL-----------GLQYVALPAELSCPGGNNSWENVNVTSAVRVCQDQRSSCNSTSEWVLCPENSVCAPDGPGYMQCVCAPGFHGYKCLRESTFP--ILMFFGILGLVTACLSVLL 207
[Close]
BLAST of EGF-like domain-containing protein vs. Ensembl Xenopus
Match: atraid (all-trans retinoic acid induced differentiation factor [Source:NCBI gene;Acc:496775])

HSP 1 Score: 66.6254 bits (161), Expect = 2.105e-12
Identity = 37/118 (31.36%), Postives = 56/118 (47.46%), Query Frame = 1 
Query:  220 LHLCQRDIFDNLIDNFKRDIKFMIMNGLQVNETTSFCGYHSLDLLEITNEKFCPGDISYWKNIVLQNDSITCQSQLNICGNQSS-ITCPKNSICFPNGPNCLTCNCMENYSGYKCLNK 570
            LHL Q  +  +L  N  RD+      GL             L  + +  E  CPG  + W+N+ + +    CQ Q + C + S  + CP+NS+C P+GP  + C C   + GYKCL +
Sbjct:   78 LHLTQAAVVLDLSSNPLRDLPSEFFRGLL-----------GLQYVALPAELSCPGGNNSWENVNVTSAVRVCQDQRSSCNSTSEWVLCPENSVCAPDGPGYMQCVCAPGFHGYKCLRE 184
[Close]
BLAST of EGF-like domain-containing protein vs. Ensembl Mouse
Match: Atraid (all-trans retinoic acid induced differentiation factor [Source:MGI Symbol;Acc:MGI:1918918])

HSP 1 Score: 83.9593 bits (206), Expect = 4.620e-19
Identity = 54/194 (27.84%), Postives = 88/194 (45.36%), Query Frame = 1 
Query:  124 EKYLNFTDLCSIHSGVVHNF------------------CCNVGNTTVGLDLHLCQ-RDIFDNLIDNFKRDIKFMIMNGLQVNETTSFCGYHSLDLLEITNEKFCPGDISYWKNIVLQNDSITCQSQLNICGNQSSIT-CPKNSICFPNGPNCLTCNCMENYSGYKCLNKGKFPTNVFLYGWILSSVGAALVFLV 645
            E+ L   ++C++  G +HN                   C N   T +GLDL  C  +D   N +  +   I  +  N L+ +   +F G+  L  L +  +  CPG  + W N+    D   CQ Q ++C +  S   CP+N  C  +GP  L C C + + GYKC+ +G F  ++ ++  IL S   A+  L+
Sbjct:   21 ERALALPEICTLCPGGMHNLSRVAAYCEDTSKLMQARCCLNQKGTILGLDLQNCSLKDPGPNFLQAYTAIIIDLQANPLKDDLANTFRGFTQLQTLILPQDVPCPGGSNAWDNVTSFKDKQICQGQRDLCNSTGSPEMCPENGSCASDGPGLLQCVCADGFHGYKCMRQGSF--SLLMFFGILGSTTLAISILL 212
[Close]
BLAST of EGF-like domain-containing protein vs. Ensembl Mouse
Match: Atraid (all-trans retinoic acid induced differentiation factor [Source:MGI Symbol;Acc:MGI:1918918])

HSP 1 Score: 79.337 bits (194), Expect = 9.171e-18
Identity = 48/156 (30.77%), Postives = 76/156 (48.72%), Query Frame = 1 
Query:  184 CCNVGNTTVGLDLHLCQ-RDIFDNLIDNFKRDIKFMIMNGLQVNETTSFCGYHSLDLLEITNEKFCPGDISYWKNIVLQNDSITCQSQLNICGNQSSIT-CPKNSICFPNGPNCLTCNCMENYSGYKCLNKGKFPTNVFLYGWILSSVGAALVFLV 645
            C N   T +GLDL  C  +D   N +  +   I  +  N L+ +   +F G+  L  L +  +  CPG  + W N+    D   CQ Q ++C +  S   CP+N  C  +GP  L C C + + GYKC+ +G F  ++ ++  IL S   A+  L+
Sbjct:    6 CLNQKGTILGLDLQNCSLKDPGPNFLQAYTAIIIDLQANPLKDDLANTFRGFTQLQTLILPQDVPCPGGSNAWDNVTSFKDKQICQGQRDLCNSTGSPEMCPENGSCASDGPGLLQCVCADGFHGYKCMRQGSF--SLLMFFGILGSTTLAISILL 159
[Close]
BLAST of EGF-like domain-containing protein vs. Ensembl Mouse
Match: Atraid (all-trans retinoic acid induced differentiation factor [Source:MGI Symbol;Acc:MGI:1918918])

HSP 1 Score: 75.8702 bits (185), Expect = 2.236e-16
Identity = 47/169 (27.81%), Postives = 75/169 (44.38%), Query Frame = 1 
Query:  124 EKYLNFTDLCSIHSGVVHNF------------------CCNVGNTTVGLDLHLCQ-RDIFDNLIDNFKRDIKFMIMNGLQVNETTSFCGYHSLDLLEITNEKFCPGDISYWKNIVLQNDSITCQSQLNICGNQSSIT-CPKNSICFPNGPNCLTCNCMENYSGYKCLNK 570
            E+ L   ++C++  G +HN                   C N   T +GLDL  C  +D   N +  +   I  +  N L+ +   +F G+  L  L +  +  CPG  + W N+    D   CQ Q ++C +  S   CP+N  C  +GP  L C C + + GYKC+ +
Sbjct:    5 ERALALPEICTLCPGGMHNLSRVAAYCEDTSKLMQARCCLNQKGTILGLDLQNCSLKDPGPNFLQAYTAIIIDLQANPLKDDLANTFRGFTQLQTLILPQDVPCPGGSNAWDNVTSFKDKQICQGQRDLCNSTGSPEMCPENGSCASDGPGLLQCVCADGFHGYKCMRQ 173
[Close]
BLAST of EGF-like domain-containing protein vs. UniProt/SwissProt
Match: sp|Q6PGD0|ARAID_MOUSE (All-trans retinoic acid-induced differentiation factor OS=Mus musculus OX=10090 GN=Atraid PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 3.231e-18
Identity = 54/194 (27.84%), Postives = 88/194 (45.36%), Query Frame = 1 
Query:  124 EKYLNFTDLCSIHSGVVHNF------------------CCNVGNTTVGLDLHLCQ-RDIFDNLIDNFKRDIKFMIMNGLQVNETTSFCGYHSLDLLEITNEKFCPGDISYWKNIVLQNDSITCQSQLNICGNQSSIT-CPKNSICFPNGPNCLTCNCMENYSGYKCLNKGKFPTNVFLYGWILSSVGAALVFLV 645
            E+ L   ++C++  G +HN                   C N   T +GLDL  C  +D   N +  +   I  +  N L+ +   +F G+  L  L +  +  CPG  + W N+    D   CQ Q ++C +  S   CP+N  C  +GP  L C C + + GYKC+ +G F  ++ ++  IL S   A+  L+
Sbjct:   21 ERALALPEICTLCPGGMHNLSRVAAYCEDTSKLMQARCCLNQKGTILGLDLQNCSLKDPGPNFLQAYTAIIIDLQANPLKDDLANTFRGFTQLQTLILPQDVPCPGGSNAWDNVTSFKDKQICQGQRDLCNSTGSPEMCPENGSCASDGPGLLQCVCADGFHGYKCMRQGSF--SLLMFFGILGSTTLAISILL 212
[Close]
BLAST of EGF-like domain-containing protein vs. UniProt/SwissProt
Match: sp|A3KNS9|ARAID_DANRE (All-trans retinoic acid-induced differentiation factor OS=Danio rerio OX=7955 GN=atraid PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.201e-16
Identity = 51/177 (28.81%), Postives = 87/177 (49.15%), Query Frame = 1 
Query:  157 IHSGVVHNFCCNVGNTT-----VGLDLHLCQRDIFDNLIDNFKRDIKFMIMNGLQVNETTSFCGYHSLDLLEITNEKFCPGDISYWKNIVLQNDSITCQSQLNICGN--QSSITCPKNSICFPNGPNCLTCNCMENYSGYKCLNKGKFPTNVFLYGWILSSVGAALVFLVIKIYFTR 666
            I  G V   CC   NT+     +GLDL  C     ++L ++    I  +  N +       F G+  L  L + ++  CPG  + W+ + +++ +  C+ Q N C    Q  + CP+NS+C P GP    C+C+ N+ GYKC+ +G+FP        +L  + A+ V +   ++FT+
Sbjct:   52 ITKGYVKGHCCFKNNTSDVDTIIGLDLSNCSISHVEHLYNSSTALIIDLSNNPISNLSDYVFQGFSQLTQLLLPSKLECPGGRASWEKVEVKSITRICEGQKNACNQTVQMPLVCPENSLCSPYGPGFFECSCLNNFHGYKCMRQGEFP-----LVKVLGILTASTVVVSSVLWFTQ 223
[Close]
BLAST of EGF-like domain-containing protein vs. UniProt/SwissProt
Match: sp|Q6UW56|ARAID_HUMAN (All-trans retinoic acid-induced differentiation factor OS=Homo sapiens OX=9606 GN=ATRAID PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.944e-16
Identity = 54/169 (31.95%), Postives = 81/169 (47.93%), Query Frame = 1 
Query:  169 VVHNFCC-NVGNTTVGLDLHLCQ-RDIFDNLIDNFKRDIKFMIMNGLQVNETTSFCGYHSLDLLEITNEKFCPGDISYWKNIVLQNDSITCQSQLNICGNQSSIT-CPKNSICFPNGPNCLTCNCMENYSGYKCLNKGKFPTNVFLYGWILSSVGAALVFLVIKIYFTR 666
            ++H  CC N   T +GLDL  C   D   N        I  +  N L+ +   +F G+  L  L +     CPG I+ W  I    D+  CQ Q N+C N      CP+N  C P+GP  L C C + + GYKC+ +G F  ++ ++  IL   GA  + + I ++ T+
Sbjct:   59 MLHARCCLNQKGTILGLDLQNCSLEDPGPNFHQAHTTVIIDLQANPLKGDLANTFRGFTQLQTLILPQHVNCPGGINAWNTITSYIDNQICQGQKNLCNNTGDPEMCPENGSCVPDGPGLLQCVCADGFHGYKCMRQGSF--SLLMFFGIL---GATTLSVSILLWATQ 222
[Close]
BLAST of EGF-like domain-containing protein vs. TrEMBL
Match: A0A437BZS0 (Uncharacterized protein OS=Oryzias javanicus OX=123683 GN=OJAV_G00231650 PE=4 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.785e-20
Identity = 60/205 (29.27%), Postives = 97/205 (47.32%), Query Frame = 1 
Query:   76 TRANVCNLICNNSSQFEKYLNFTDLCSIHSGVVHNFCCNVGNTT------VGLDLHLCQRDIFDNLIDNFKRDIKFMIMNGLQVNETTSFCGYHSLDLLEITNEKFCPGDISYWKNIVLQNDSITCQSQLNICGN--QSSITCPKNSICFPNGPNCLTCNCMENYSGYKCLNKGKFPTNVFLYGWILSSVGAALVFLVIKIYFTR 666
            TR  VC ++C+ S     +      CS  +G +   CC   ++       +GLDL  C     +NL       +  + +N +     T F G+  L+ + +     CPG  + W+ + L+  ++ C+ Q N+C    Q S+ CP+NS+C P GP C  C C E+Y GYKCL +G FP  V     +   + AA V +   ++ T+
Sbjct:   32 TRPQVC-MLCSGS--VRNHTTVDRFCSWSAGRIQGRCCLRNDSISDPERIIGLDLSNCSLTHVENLEGASTVVMIDLSLNPIVNISDTVFQGFGDLNFMILPPHAVCPGGNTSWEKVELKEGNLLCEGQKNMCNQTGQPSVYCPENSLCAPYGPGCYECGCAEDYYGYKCLRQGNFPALV-----VFGPLAAATVVISFLLWVTQ 228
[Close]
BLAST of EGF-like domain-containing protein vs. TrEMBL
Match: A0A3P8XKJ7 (All-trans retinoic acid-induced differentiation factor OS=Esox lucius OX=8010 PE=4 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.702e-20
Identity = 67/230 (29.13%), Postives = 118/230 (51.30%), Query Frame = 1 
Query:   13 SFKMKFYSIIFYLIFMFFN--DLTRANVCNLICNNSSQFEKYLNFTDLCSIHSGVVHNFCCNVG--NTT-----VGLDLHLCQRDIFDNLIDNFKRDIKFMIMNGLQVNETTSFCGYHSLDLLEITNEKFCPGDISYWKNIVLQNDSITCQSQLNICGNQS---SITCPKNSICFPNGPNCLTCNCMENYSGYKCLNKGKFPTNVFLYGWILSSVGAALVFLVIKIYFTR 666
            S +    +++F +    F    LT   +C+L CN + Q          CS   G++   CC  G  NT+     +GLDL  C     +NL +     +  + MN L   + + F G+  L  L + +   CPG  + W+ + ++ +++ C+ Q +IC NQ+   S+TCP+NS+C  +GP    C+C+E++ GYKCL +G+FP  + ++G     +GA+   + I ++ T+
Sbjct:    6 SQQQNAEAVLFIVHLCLFGGYQLTELQICHL-CNGTVQNGTATG--QFCSGSGGLIDGRCCLRGKENTSNVVYVIGLDLSNCSLSHVENLQEASTAAMIDLSMNLLLTLDDSLFEGFIQLGSLILPSNLVCPGGNASWEKVEVKGETVLCEGQKDIC-NQTGHLSLTCPENSLCSADGPGLFQCDCVEDFHGYKCLREGQFPI-IQVFG----PLGASAFLVSILLWVTQ 226
[Close]
BLAST of EGF-like domain-containing protein vs. TrEMBL
Match: A0A3B4UMB7 (All-trans retinoic acid-induced differentiation factor OS=Seriola dumerili OX=41447 PE=4 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 6.429e-20
Identity = 64/218 (29.36%), Postives = 103/218 (47.25%), Query Frame = 1 
Query:   37 IIFYLIFMFFNDLTRANVCNLICNNSSQFEKYLNFTDLCSIHSGVVHNFCC-NVGNTT-----VGLDLHLCQRDIFDNLIDNFKRDIKFMIMNGLQVNETTSFCGYHSLDLLEITNEKFCPGDISYWKNIVLQNDSITCQSQLNICGN--QSSITCPKNSICFPNGPNCLTCNCMENYSGYKCLNKGKFPTNVFLYGWILSSVGAALVFLVIKIYFTR 666
            +IF L F     LT   VC L    S          + CS+ +G +   CC    NTT     +GLDL  C     ++L +     +  +  N       T+F G+  L+ + +  +  CPG  + W  + +++ +  C+ Q N+C    Q S+ CP+NS+C P GP    C+C +NY GYKCL +GKFP        +   +GA+ V + + ++ T+
Sbjct:   17 LIFNLCFNASYHLTELQVCKLC---SGAVINGTTVAEFCSVSAGRIDGRCCFRNDNTTDPEHIIGLDLSNCSLTHLEDLHEASTALMIDLSHNPFVNISDTAFQGFVELNYMILPEDIVCPGGNTSWSKVEVKDGNRICEGQKNVCNQTGQLSMNCPENSLCAPYGPGSFECSCADNYHGYKCLREGKFPAL-----QVFGPLGASTVVISLLLWVTQ 226
[Close]
BLAST of EGF-like domain-containing protein vs. TrEMBL
Match: A0A3P8W1Z9 (All-trans retinoic acid-induced differentiation factor OS=Cynoglossus semilaevis OX=244447 PE=4 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 7.725e-20
Identity = 68/219 (31.05%), Postives = 102/219 (46.58%), Query Frame = 1 
Query:   37 IIFYLIFMFFNDLTRANVCNLICNNSSQFEKYLNFTDLCSIHSGVVHNFCC-------NVGNTTVGLDLHLCQRDIFDNLIDNFKRDIKFMIMNGLQVNETTSFCGYHSLDLLEITNEKFCPGDISYWKNIVLQNDSITCQSQLNICGN--QSSITCPKNSICFPNGPNCLTCNCMENYSGYKCLNKGKFPTNVFLYGWILSSVGAALVFLVIKIYFTR 666
            II +L F    +LTR  VC L C+ S   E  +     C + +G +   CC       N     +GLDL  C     D+L +     +  + +N L     + F G+  L+ + +  + FCPG    W  + L+  S  C+   N+C    Q  I CP+NS+C P GP    CNC +NY GYKCL +G+FP        +   +GA+ V L   ++ T+
Sbjct:   16 IISHLCFYAPCELTRLPVCKL-CSGSVLNETAVGH--FCFVSNGRLEGRCCLKNDSNSNGTERIIGLDLSNCSLKQVDDLHEAATAYMIDLSLNPLVNLSDSVFEGFSDLNYMILPIDIFCPGGNQSWSKVELREGSRLCEDPKNMCNQTGQLVIDCPENSLCTPYGPGFFECNCADNYYGYKCLREGEFPAL-----QVFGPLGASTVVLSFLLWVTQ 226
[Close]
BLAST of EGF-like domain-containing protein vs. TrEMBL
Match: A0A3Q1HKY0 (All-trans retinoic acid-induced differentiation factor OS=Anabas testudineus OX=64144 PE=4 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.176e-19
Identity = 64/217 (29.49%), Postives = 102/217 (47.00%), Query Frame = 1 
Query:   40 IFYLIFMFFNDLTRANVCNLICNNSSQFEKYLNFTDLCSIHSGVVHNFCCNVGNTT------VGLDLHLCQRDIFDNLIDNFKRDIKFMIMNGLQVNETTSFCGYHSLDLLEITNEKFCPGDISYWKNIVLQNDSITCQSQLNICGN--QSSITCPKNSICFPNGPNCLTCNCMENYSGYKCLNKGKFPTNVFLYGWILSSVGAALVFLVIKIYFTR 666
            IF L F     LT   VC L C+ +S           C + +G +   CC   + T      +GLDL  C     ++L D     +  +  N +     T+F G+  ++ + +  +  CPG  + W  + +++ +  C+ Q NIC    Q SI CP+NS+C P GP    C+C +NY GYKCL KG+FP        +   +GA+ V +   ++ T+
Sbjct:   16 IFNLCFYASCQLTGLQVCKL-CSGTS-LNATAAVGKFCFVSAGTIDGRCCLRNDNTTDREHIIGLDLSNCSLTHVEDLQDASTALMIDLSHNPIVNISDTTFEGFIEMNYMILPEDIVCPGGNTSWDKVEVKDGTRFCEGQKNICNQTGQLSINCPENSLCAPYGPGLFECSCADNYHGYKCLRKGEFPAL-----QVFGPLGASTVVIAFLLWVTQ 225
[Close]
BLAST of EGF-like domain-containing protein vs. Ensembl Cavefish
Match: atraid (all-trans retinoic acid induced differentiation factor [Source:NCBI gene;Acc:103029124])

HSP 1 Score: 75.485 bits (184), Expect = 6.614e-16
Identity = 45/158 (28.48%), Postives = 79/158 (50.00%), Query Frame = 1 
Query:  199 NTTVGLDLHLCQRDIFDNLIDNFKRDIKFMIMNGLQVNETTSFCGYHSLDLLEITNEKFCPGDISYWKNIVLQNDSITCQSQLNICGNQSSIT--CPKNSICFPNGPNCLTCNCMENYSGYKCLNKGKFPTNVFLYGWILSSVGAALVFLVIKIYFTR 666
            ++  GLD   C     D+L +     I  +  N L       F G++ L  L +  +  CPG  + W  + ++ ++  C+ Q N C NQ+ ++  CP+NS+C P GP    C C +N+ GYKCL +G+FP        +++ +G + V +   ++ T+
Sbjct:   83 DSIFGLDFSNCSLSRLDDLSEASAAFIIDLSNNPLSNLSDFVFQGFNQLGHLIMPIKLECPGGNTSWDKVEVKGNTRLCEGQKNAC-NQTGMSWDCPENSLCMPYGPGFFECTCAQNFHGYKCLREGQFPMME-----VMAILGGSTVVISALLWVTQ 234
[Close]
BLAST of EGF-like domain-containing protein vs. Ensembl Medaka
Match: atraid (all-trans retinoic acid induced differentiation factor [Source:NCBI gene;Acc:101167839])

HSP 1 Score: 86.6557 bits (213), Expect = 3.999e-20
Identity = 57/182 (31.32%), Postives = 87/182 (47.80%), Query Frame = 1 
Query:  148 LCSIHSGVVHNFCCNVGNTT------VGLDLHLCQRDIFDNLIDNFKRDIKFMIMNGLQVNET-----TSFCGYHSLDLLEITNEKFCPGDISYWKNIVLQNDSITCQSQLNICGNQS---SITCPKNSICFPNGPNCLTCNCMENYSGYKCLNKGKFPTNVFLYGWILSSVGAALVFLVIK 651
             CS  +G +   CC   N+       +GLDL  C     DNL     + +  ++M    +N       T F G+  L+ + +     CPG  + W+ + L+     C+ Q N+C NQ+   S+ CP+NS+C P GP    C+C EN+ GYKCL +G FP  V       S+V  +L+  V +
Sbjct:   52 FCSSSAGRIKGRCCLKNNSISDPERIIGLDLSNCSLTHVDNL-----QGVSTVVMIDFSINPIVNISDTVFEGFGDLNFMILPPHVACPGGNTSWEKVELKEGKRLCEGQKNMC-NQTGHLSVYCPENSLCAPYGPGFSECSCAENFYGYKCLRQGDFPALVVFGPLAASTVVMSLLLWVTQ 227
[Close]
BLAST of EGF-like domain-containing protein vs. Planmine SMEST
Match: SMESG000034231.1 (SMESG000034231.1)

HSP 1 Score: 427.943 bits (1099), Expect = 4.814e-154
Identity = 211/216 (97.69%), Postives = 213/216 (98.61%), Query Frame = 1 
Query:   22 MKFYSIIFYLIFMFFNDLTRANVCNLICNNSSQFEKYLNFTDLCSIHSGVVHNFCCNVGNTTVGLDLHLCQRDIFDNLIDNFKRDIKFMIMNGLQVNETTSFCGYHSLDLLEITNEKFCPGDISYWKNIVLQNDSITCQSQLNICGNQSSITCPKNSICFPNGPNCLTCNCMENYSGYKCLNKGKFPTNVFLYGWILSSVGAALVFLVIKIYFTRF 669
            MKFYSIIFYLIFMFFNDLTRANVCNLICNNSSQFEK  NFTDLCSIH+GVVHNFCCNVGNTTVGLDL LC+RDIFDNLIDNFKRDIKFMIMNGLQVNETTSFCGYHSLDLLEITNEKFCPGDISYWKNIVLQNDSITCQSQLNICGNQSSITCPKNSICFPNGPNCLTCNCMENYSGYKCLNKGKFPTNVFLYGWILSSVGAALVFLVIKIYFTRF
Sbjct:    1 MKFYSIIFYLIFMFFNDLTRANVCNLICNNSSQFEKNFNFTDLCSIHAGVVHNFCCNVGNTTVGLDLRLCKRDIFDNLIDNFKRDIKFMIMNGLQVNETTSFCGYHSLDLLEITNEKFCPGDISYWKNIVLQNDSITCQSQLNICGNQSSITCPKNSICFPNGPNCLTCNCMENYSGYKCLNKGKFPTNVFLYGWILSSVGAALVFLVIKIYFTRF 216
[Close]
BLAST of EGF-like domain-containing protein vs. Planmine SMEST
Match: SMESG000034231.1 (SMESG000034231.1)

HSP 1 Score: 404.831 bits (1039), Expect = 4.907e-145
Identity = 199/204 (97.55%), Postives = 201/204 (98.53%), Query Frame = 1 
Query:   58 MFFNDLTRANVCNLICNNSSQFEKYLNFTDLCSIHSGVVHNFCCNVGNTTVGLDLHLCQRDIFDNLIDNFKRDIKFMIMNGLQVNETTSFCGYHSLDLLEITNEKFCPGDISYWKNIVLQNDSITCQSQLNICGNQSSITCPKNSICFPNGPNCLTCNCMENYSGYKCLNKGKFPTNVFLYGWILSSVGAALVFLVIKIYFTRF 669
            MFFNDLTRANVCNLICNNSSQFEK  NFTDLCSIH+GVVHNFCCNVGNTTVGLDL LC+RDIFDNLIDNFKRDIKFMIMNGLQVNETTSFCGYHSLDLLEITNEKFCPGDISYWKNIVLQNDSITCQSQLNICGNQSSITCPKNSICFPNGPNCLTCNCMENYSGYKCLNKGKFPTNVFLYGWILSSVGAALVFLVIKIYFTRF
Sbjct:    1 MFFNDLTRANVCNLICNNSSQFEKNFNFTDLCSIHAGVVHNFCCNVGNTTVGLDLRLCKRDIFDNLIDNFKRDIKFMIMNGLQVNETTSFCGYHSLDLLEITNEKFCPGDISYWKNIVLQNDSITCQSQLNICGNQSSITCPKNSICFPNGPNCLTCNCMENYSGYKCLNKGKFPTNVFLYGWILSSVGAALVFLVIKIYFTRF 204
The following BLAST results are available for this feature:
BLAST of EGF-like domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 4
Match NameE-valueIdentityDescription
ATRAID1.194e-1731.36all-trans retinoic acid induced differentiation fa... [more]
ATRAID4.048e-1731.95all-trans retinoic acid induced differentiation fa... [more]
ATRAID8.777e-1731.95all-trans retinoic acid induced differentiation fa... [more]
ATRAID8.777e-1731.95all-trans retinoic acid induced differentiation fa... [more]
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BLAST of EGF-like domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EGF-like domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EGF-like domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
atraid1.591e-1728.81all-trans retinoic acid-induced differentiation fa... [more]
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BLAST of EGF-like domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 3
Match NameE-valueIdentityDescription
atraid5.605e-1532.87all-trans retinoic acid induced differentiation fa... [more]
atraid7.539e-1531.47all-trans retinoic acid induced differentiation fa... [more]
atraid2.105e-1231.36all-trans retinoic acid induced differentiation fa... [more]
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BLAST of EGF-like domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 3
Match NameE-valueIdentityDescription
Atraid4.620e-1927.84all-trans retinoic acid induced differentiation fa... [more]
Atraid9.171e-1830.77all-trans retinoic acid induced differentiation fa... [more]
Atraid2.236e-1627.81all-trans retinoic acid induced differentiation fa... [more]
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BLAST of EGF-like domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 3
Match NameE-valueIdentityDescription
sp|Q6PGD0|ARAID_MOUSE3.231e-1827.84All-trans retinoic acid-induced differentiation fa... [more]
sp|A3KNS9|ARAID_DANRE1.201e-1628.81All-trans retinoic acid-induced differentiation fa... [more]
sp|Q6UW56|ARAID_HUMAN1.944e-1631.95All-trans retinoic acid-induced differentiation fa... [more]
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BLAST of EGF-like domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A437BZS01.785e-2029.27Uncharacterized protein OS=Oryzias javanicus OX=12... [more]
A0A3P8XKJ73.702e-2029.13All-trans retinoic acid-induced differentiation fa... [more]
A0A3B4UMB76.429e-2029.36All-trans retinoic acid-induced differentiation fa... [more]
A0A3P8W1Z97.725e-2031.05All-trans retinoic acid-induced differentiation fa... [more]
A0A3Q1HKY01.176e-1929.49All-trans retinoic acid-induced differentiation fa... [more]
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BLAST of EGF-like domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
atraid6.614e-1628.48all-trans retinoic acid induced differentiation fa... [more]
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BLAST of EGF-like domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EGF-like domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EGF-like domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EGF-like domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
atraid3.999e-2031.32all-trans retinoic acid induced differentiation fa... [more]
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BLAST of EGF-like domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000034231.14.814e-15497.69SMESG000034231.1[more]
SMESG000034231.14.907e-14597.55SMESG000034231.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30006484 ID=SMED30006484|Name=EGF-like domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=777bp
TGACCTTGTTAATCTTTCAAAATGAAATTTTATTCCATAATTTTTTATTT
AATTTTTATGTTTTTTAACGATCTAACTCGAGCTAATGTTTGCAATCTAA
TTTGTAATAATTCATCACAATTTGAAAAATACTTGAATTTTACTGATTTA
TGTAGTATACATTCTGGAGTAGTACATAATTTTTGTTGCAACGTTGGCAA
CACTACAGTTGGGCTAGATCTACATCTCTGTCAACGTGATATTTTTGATA
ATCTAATTGATAATTTTAAACGCGATATTAAATTCATGATTATGAATGGA
TTGCAAGTTAATGAAACAACATCATTTTGTGGTTATCACAGTTTAGATTT
ATTGGAAATAACCAATGAGAAATTTTGTCCCGGTGATATTTCTTATTGGA
AAAATATTGTTTTACAAAACGACTCGATAACATGTCAAAGTCAATTGAAT
ATTTGTGGCAATCAATCTTCCATAACATGCCCCAAAAATTCGATTTGTTT
TCCAAATGGGCCAAATTGCTTGACGTGTAATTGCATGGAAAATTATTCCG
GTTACAAATGCTTGAATAAGGGTAAATTTCCTACTAATGTTTTTCTATAT
GGATGGATATTGAGTTCAGTTGGAGCAGCTTTGGTTTTCTTAGTGATTAA
GATTTATTTTACACGATTTTATTATTAATGAATTCATATTCATACTCATT
TCATCTGATCCTGTTCAATTTATTATGACGACCCACTTTCGTTATTTATA
AAATATCTTAATTATACCCATTTTAAA
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protein sequence of SMED30006484-orf-1

>SMED30006484-orf-1 ID=SMED30006484-orf-1|Name=SMED30006484-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=219bp
MKFYSIIFYLIFMFFNDLTRANVCNLICNNSSQFEKYLNFTDLCSIHSGV
VHNFCCNVGNTTVGLDLHLCQRDIFDNLIDNFKRDIKFMIMNGLQVNETT
SFCGYHSLDLLEITNEKFCPGDISYWKNIVLQNDSITCQSQLNICGNQSS
ITCPKNSICFPNGPNCLTCNCMENYSGYKCLNKGKFPTNVFLYGWILSSV
GAALVFLVIKIYFTRFYY*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000043dorsal ventral margin of the whole animal
PLANA:0000070intestinal phagocyte
PLANA:0003116parenchymal cell
Vocabulary: INTERPRO
TermDefinition
IPR042350ATRAID
Vocabulary: cellular component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR042350All-trans retinoic acid-induced differentiation factorPANTHERPTHR15926FAMILY NOT NAMEDcoord: 9..204
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.787
NoneNo IPR availableTMHMMTMhelixcoord: 191..213