Acyl-CoA-binding domain-containing protein 5

Overview
NameAcyl-CoA-binding domain-containing protein 5
Smed IDSMED30006466
Length (bp)828
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Acyl-CoA-binding domain-containing protein 5 (SMED30006466) t-SNE clustered cells

Violin plots show distribution of expression levels for Acyl-CoA-binding domain-containing protein 5 (SMED30006466) in cells (dots) of each of the 12 neoblast clusters.

 

back to top


 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Acyl-CoA-binding domain-containing protein 5 (SMED30006466) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Acyl-CoA-binding domain-containing protein 5 (SMED30006466) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top


 

Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020




SMED30006466

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 7

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
headSMED30006466SMESG000041447.1 SmedASXL_008459SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016
whole organism asexual adult RNA-sequencing evidence
neuronSMED30006466SMESG000041447.1 dd_Smed_v4_4625_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
neuronSMED30006466SMESG000041447.1 dd_Smed_v4_4625_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult colorimetric in situ hybridization evidence
parenchymal cellSMED30006466SMESG000041447.1 dd_Smed_v4_4625_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
epidermal cellSMED30006466SMESG000041447.1 dd_Smed_v4_4625_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
headSMED30006466SMESG000041447.1 dd_Smed_v6_4625_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017
whole organism asexual adult RNA-sequencing evidence
epidermisSMED30006466SMESG000041447.1 dd_Smed_v4_4625_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of Acyl-CoA-binding domain-containing protein 5 vs. Ensembl Xenopus
Match: acbd5 (acyl-CoA binding domain containing 5 [Source:Xenbase;Acc:XB-GENE-982910])

HSP 1 Score: 80.8777 bits (198), Expect = 9.280e-18
Identity = 60/161 (37.27%), Postives = 89/161 (55.28%), Query Frame = 2
Query:  314 RINVLRPIPPERRTVFLETEDQHAINYQSKTEKERQMRERFHNAYSRYYYGNSVNREIYRKYLRESLKQQMSEKNSLM--SINYKMRQNESVEAVRRDQADLEKDMLTCRQRTEFMRQFRDGNXXXXXXXXXXXXXXXXXXXXXXXQLLQYNPINWSATLK 790
            R+N L P   +RRTV LET   H  N Q     +++   R+H  + R +YG    +E YR  +R+ LK+QMSEK +L    ++ + R+ E +  V  D+  L +D+   R    F+ ++RD NK +ME      +     E L E++LLQ+NPINWS TLK
Sbjct:   57 RLNPLHPPGIKRRTVSLETVAAHHHNQQRSLTMQQREYNRYHQGWRRPFYGTPTEKEDYRNDIRQLLKKQMSEKWALQREVLSSQSRELEVLMEV--DRTALMQDVEQQRTHAVFLTKYRDENKRLMETKWHENRLTRSLETLKERELLQFNPINWSGTLK 215          
BLAST of Acyl-CoA-binding domain-containing protein 5 vs. TrEMBL
Match: A0A267F5V4 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig007885g1 PE=4 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.885e-27
Identity = 69/160 (43.12%), Postives = 99/160 (61.88%), Query Frame = 2
Query:  311 KRINVLRPIPPERRTVFLETEDQHAINYQSKTEKERQMRERFHNAYSRYYYGNSVNREIYRKYLRESLKQQMSEKNSLMSINYKMRQNESVEAVRRDQADLEKDMLTCRQRTEFMRQFRDGNXXXXXXXXXXXXXXXXXXXXXXXQLLQYNPINWSATLK 790
            KR+N LRP PPER T   ET D H  N Q     ER+   RFHNA+SRYYYG+   +E++ +Y RE LKQQM + +      ++ +  ES  A  RD+ D+E + +    + +F+ Q+RD NK++MEE  +R + E  RE   +++ L+YNPINWS +LK
Sbjct:   59 KRVNPLRPQPPERMTCVTETGDPHYQNQQRLAMLERKQFHRFHNAWSRYYYGSVAEKELHNRYFREGLKQQMRDSDEKNRRVFREKAQESSVAFSRDRQDIESEQVQRASKHQFLTQYRDANKMMMEEKAQRLRAERQRELQFDREQLKYNPINWSCSLK 218          
BLAST of Acyl-CoA-binding domain-containing protein 5 vs. TrEMBL
Match: A0A1I8I5N0 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.650e-26
Identity = 69/160 (43.12%), Postives = 99/160 (61.88%), Query Frame = 2
Query:  311 KRINVLRPIPPERRTVFLETEDQHAINYQSKTEKERQMRERFHNAYSRYYYGNSVNREIYRKYLRESLKQQMSEKNSLMSINYKMRQNESVEAVRRDQADLEKDMLTCRQRTEFMRQFRDGNXXXXXXXXXXXXXXXXXXXXXXXQLLQYNPINWSATLK 790
            KR+N LRP PPER T   ET D H  N Q     ER+   RFHNA+SRYYYG+   +E++ +Y RE LKQQM + +      ++ +  ES  A  RD+ D+E + +    + +F+ Q+RD NK++MEE  +R + E  RE   +++ L+YNPINWS +LK
Sbjct:   83 KRVNPLRPQPPERMTCVTETGDPHYQNQQRLAMLERKQFHRFHNAWSRYYYGSVAEKELHNRYFREGLKQQMRDSDEKNRRVFREKAQESSVAFSRDRQDIESEQVQRASKHQFLTQYRDANKMMMEEKAQRLRAERQRELQFDREQLKYNPINWSCSLK 242          
BLAST of Acyl-CoA-binding domain-containing protein 5 vs. TrEMBL
Match: A0A1I8I9T9 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.757e-26
Identity = 69/160 (43.12%), Postives = 99/160 (61.88%), Query Frame = 2
Query:  311 KRINVLRPIPPERRTVFLETEDQHAINYQSKTEKERQMRERFHNAYSRYYYGNSVNREIYRKYLRESLKQQMSEKNSLMSINYKMRQNESVEAVRRDQADLEKDMLTCRQRTEFMRQFRDGNXXXXXXXXXXXXXXXXXXXXXXXQLLQYNPINWSATLK 790
            KR+N LRP PPER T   ET D H  N Q     ER+   RFHNA+SRYYYG+   +E++ +Y RE LKQQM + +      ++ +  ES  A  RD+ D+E + +    + +F+ Q+RD NK++MEE  +R + E  RE   +++ L+YNPINWS +LK
Sbjct:  101 KRVNPLRPQPPERMTCVTETGDPHYQNQQRLAMLERKQFHRFHNAWSRYYYGSVAEKELHNRYFREGLKQQMRDSDEKNRRVFREKAQESSVAFSRDRQDIESEQVQRASKHQFLTQYRDANKMMMEEKAQRLRAERQRELQFDREQLKYNPINWSCSLK 260          
BLAST of Acyl-CoA-binding domain-containing protein 5 vs. TrEMBL
Match: R7VIY8 (Uncharacterized protein OS=Capitella teleta OX=283909 GN=CAPTEDRAFT_228779 PE=4 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.607e-23
Identity = 70/198 (35.35%), Postives = 110/198 (55.56%), Query Frame = 2
Query:  197 SNTALQPVPLRR-SYEIKIPSTNAFDPYPAPTAFSENLCKRINVLRPIPPERRTVFLETEDQHAINYQSKTEKERQMRERFHNAYSRYYYGNSVNREIYRKYLRESLKQQMSEKNSLMSINYKMRQNESVEAVRRDQADLEKDMLTCRQRTEFMRQFRDGNXXXXXXXXXXXXXXXXXXXXXXXQLLQYNPINWSATL 787
            S +AL  +P ++ S  I   ++  +D YP     +  + K++N L+P PP+RRTV LET D H  N Q     +++   R+H+A+S+YYYG+   +E YR Y R  LKQQM +  S    +   R  ES  A+  D+ D  +DM    Q+  +++ FRD NK +ME S +  ++        +++ + YNPINWS +L
Sbjct:   11 SVSALPRIPHQQASMSISNFTSTVYDTYPGRLPATAVIPKKVNPLQPTPPKRRTVALETIDPHWQNEQRTMRMKQREHHRYHDAWSKYYYGSQPEQEQYRAYTRSVLKQQMRDLWSRKRQDRTDRSKESQAALLHDRQDRMQDMNNAMQKVVYLKTFRDENKKLMENSWQNIRDTKTSSDRFDREQMLYNPINWSHSL 208          
BLAST of Acyl-CoA-binding domain-containing protein 5 vs. TrEMBL
Match: A0A2T7NVT6 (Uncharacterized protein OS=Pomacea canaliculata OX=400727 GN=C0Q70_15779 PE=4 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.326e-22
Identity = 68/180 (37.78%), Postives = 111/180 (61.67%), Query Frame = 2
Query:  266 FDPYPAP--TAFSENL--CKRINVLRPIPPERR-TVFLETEDQHAINYQSKTEKERQMRERFHNAYSRYYYGNSVNREIYRKYLRESLKQQMSEKNSLMSINYKMRQNESVEAVRRDQADLEKDMLTCRQRTEFMRQFRDGNXXXXXXXXXXXXXXXXXXXXXXXQLLQYNPINWSATLK 790
            + PYP P  T+  +++   +RIN L P  P+RR     ET DQH  N + +   +++   RFH+A+S+ +YG+  ++E YRK+ RE LKQQMS++++L     K +  ES  AV  D+  L +D     ++ ++++Q+RD NK  ME   ++++ E M E   ++++L+YNPINWS TLK
Sbjct:   33 YGPYPPPELTSIWDHMKIPQRINPLAPPIPKRRINASWETVDQHWHNDKRRIIMQQREHSRFHSAWSKPFYGSPADQEAYRKHFREVLKQQMSDQDALKRQQLKDKVRESEAAVEYDRQCLVQDYEAFSKKNDYLKQYRDENKRFMESQWQQRRIERMLENHYDREVLRYNPINWSGTLK 212          
BLAST of Acyl-CoA-binding domain-containing protein 5 vs. Ensembl Nematostella
Match: EDO34885 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SN42])

HSP 1 Score: 51.6026 bits (122), Expect = 3.799e-8
Identity = 52/161 (32.30%), Postives = 83/161 (51.55%), Query Frame = 2
Query:  314 RINVLRPIPPERRTVFLETEDQHAINYQSKTEKERQMRERF---HNAYSRYYYGNSVNREIYRKYLRESLKQQMSEKNSLMSINYKMRQNESVEAVRRDQADLEKDMLTCRQRTEFMRQFRDGNXXXXXXXXXXXXXXXXXXXXXXXQLLQYNPINWSATL 787
            + N LRP    +RTV LET    A   Q +  K R  RE +   H  Y +  YGN + +E  R+  R  L++Q++E+++        R  ES  A+  D+A   +D      R  ++++FRD NK +ME   ++ + E   +   E++LL  +PINW+ TL
Sbjct:   20 KANPLRPGEG-KRTVSLETV---ASQQQVEEHKLRGKREAYMKRHELYVKSMYGNVIEKEQVRQKQRALLQEQIAEQDNKHRQYLDDRYKESNFAIHYDEACRRQDAEDRNNRKAYLQKFRDENKRLMETRAEQLRREREAQHQRERELLALSPINWTKTL 176          
BLAST of Acyl-CoA-binding domain-containing protein 5 vs. Planmine SMEST
Match: SMESG000041447.1 (SMESG000041447.1)

HSP 1 Score: 406.757 bits (1044), Expect = 2.224e-145
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 2
Query:  125 MKVTESSKLPRMACPSDSIMMTVRSNTALQPVPLRRSYEIKIPSTNAFDPYPAPTAFSENLCKRINVLRPIPPERRTVFLETEDQHAINYQSKTEKERQMRERFHNAYSRYYYGNSVNREIYRKYLRESLKQQMSEKNSLMSINYKMRQNESVEAVRRDQADLEKDMLTCRQRTEFMRQFRDGNXXXXXXXXXXXXXXXXXXXXXXXQLLQYNPINWSATLK 790
            MKVTESSKLPRMACPSDSIMMTVRSNTALQPVPLRRSYEIKIPSTNAFDPYPAPTAFSENLCKRINVLRPIPPERRTVFLETEDQHAINYQSKTEKERQMRERFHNAYSRYYYGNSVNREIYRKYLRESLKQQMSEKNSLMSINYKMRQNESVEAVRRDQADLEKDMLTCRQRTEFMRQFRDGNKIIMEESMKRKKEELMREKLIEKQLLQYNPINWSATLK
Sbjct:    1 MKVTESSKLPRMACPSDSIMMTVRSNTALQPVPLRRSYEIKIPSTNAFDPYPAPTAFSENLCKRINVLRPIPPERRTVFLETEDQHAINYQSKTEKERQMRERFHNAYSRYYYGNSVNREIYRKYLRESLKQQMSEKNSLMSINYKMRQNESVEAVRRDQADLEKDMLTCRQRTEFMRQFRDGNKIIMEESMKRKKEELMREKLIEKQLLQYNPINWSATLK 222          
BLAST of Acyl-CoA-binding domain-containing protein 5 vs. Planmine SMEST
Match: SMESG000041447.1 (SMESG000041447.1)

HSP 1 Score: 385.185 bits (988), Expect = 6.748e-137
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 2
Query:  158 MACPSDSIMMTVRSNTALQPVPLRRSYEIKIPSTNAFDPYPAPTAFSENLCKRINVLRPIPPERRTVFLETEDQHAINYQSKTEKERQMRERFHNAYSRYYYGNSVNREIYRKYLRESLKQQMSEKNSLMSINYKMRQNESVEAVRRDQADLEKDMLTCRQRTEFMRQFRDGNXXXXXXXXXXXXXXXXXXXXXXXQLLQYNPINWSATLK 790
            MACPSDSIMMTVRSNTALQPVPLRRSYEIKIPSTNAFDPYPAPTAFSENLCKRINVLRPIPPERRTVFLETEDQHAINYQSKTEKERQMRERFHNAYSRYYYGNSVNREIYRKYLRESLKQQMSEKNSLMSINYKMRQNESVEAVRRDQADLEKDMLTCRQRTEFMRQFRDGNKIIMEESMKRKKEELMREKLIEKQLLQYNPINWSATLK
Sbjct:    1 MACPSDSIMMTVRSNTALQPVPLRRSYEIKIPSTNAFDPYPAPTAFSENLCKRINVLRPIPPERRTVFLETEDQHAINYQSKTEKERQMRERFHNAYSRYYYGNSVNREIYRKYLRESLKQQMSEKNSLMSINYKMRQNESVEAVRRDQADLEKDMLTCRQRTEFMRQFRDGNKIIMEESMKRKKEELMREKLIEKQLLQYNPINWSATLK 211          
The following BLAST results are available for this feature:
BLAST of Acyl-CoA-binding domain-containing protein 5 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Acyl-CoA-binding domain-containing protein 5 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Acyl-CoA-binding domain-containing protein 5 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Acyl-CoA-binding domain-containing protein 5 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Acyl-CoA-binding domain-containing protein 5 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1
Match NameE-valueIdentityDescription
acbd59.280e-1837.27acyl-CoA binding domain containing 5 [Source:Xenba... [more]
back to top
BLAST of Acyl-CoA-binding domain-containing protein 5 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Acyl-CoA-binding domain-containing protein 5 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Acyl-CoA-binding domain-containing protein 5 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A267F5V49.885e-2743.13Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A1I8I5N01.650e-2643.13Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A1I8I9T92.757e-2643.13Uncharacterized protein OS=Macrostomum lignano OX=... [more]
R7VIY81.607e-2335.35Uncharacterized protein OS=Capitella teleta OX=283... [more]
A0A2T7NVT64.326e-2237.78Uncharacterized protein OS=Pomacea canaliculata OX... [more]
back to top
BLAST of Acyl-CoA-binding domain-containing protein 5 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Acyl-CoA-binding domain-containing protein 5 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Acyl-CoA-binding domain-containing protein 5 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Acyl-CoA-binding domain-containing protein 5 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO348853.799e-832.30Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
back to top
BLAST of Acyl-CoA-binding domain-containing protein 5 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Acyl-CoA-binding domain-containing protein 5 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000041447.12.224e-145100.00SMESG000041447.1[more]
SMESG000041447.16.748e-137100.00SMESG000041447.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30006466 ID=SMED30006466|Name=Acyl-CoA-binding domain-containing protein 5|organism=Schmidtea mediterranea sexual|type=transcript|length=828bp
TGACGCTTAATTATAGTGGTAAATCCGGTACGCTAGTGTACTGAAAGATG
TCATAAGCAACATCAGTAGTTATTGTCATACTACATAATTTTACCAGTTG
AGATTCATTCATTAACTCCATAGTATGAAAGTTACGGAATCTAGCAAGTT
ACCACGAATGGCTTGTCCTAGTGATTCTATAATGATGACAGTTAGGTCAA
ATACTGCTTTGCAACCTGTTCCTTTGAGAAGAAGTTATGAAATTAAAATT
CCTTCAACTAATGCTTTTGATCCATATCCTGCACCAACTGCATTTTCCGA
AAACCTATGCAAAAGGATAAATGTTTTACGACCTATTCCTCCTGAACGGA
GAACAGTTTTTCTTGAAACTGAAGATCAGCATGCTATTAATTACCAATCC
AAAACTGAAAAAGAAAGACAAATGAGAGAAAGATTTCATAATGCTTATTC
AAGATATTATTATGGAAACTCCGTTAATCGGGAAATATACAGAAAGTATT
TGCGAGAAAGCCTCAAGCAGCAAATGTCAGAAAAGAATTCGTTGATGTCC
ATAAATTACAAAATGAGACAAAACGAAAGCGTTGAGGCAGTTCGACGAGA
TCAAGCCGATTTGGAAAAGGATATGTTAACTTGTCGTCAAAGAACAGAAT
TTATGCGACAATTTAGAGATGGAAACAAAATAATAATGGAAGAGTCAATG
AAAAGAAAGAAAGAAGAATTGATGAGAGAAAAATTGATAGAAAAACAGCT
TTTACAATACAATCCAATAAACTGGAGTGCAACATTGAAATGAAATTTAT
TACATCTAAAATATAAATGTTCTTTCTG
back to top

protein sequence of SMED30006466-orf-1

>SMED30006466-orf-1 ID=SMED30006466-orf-1|Name=SMED30006466-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=223bp
MKVTESSKLPRMACPSDSIMMTVRSNTALQPVPLRRSYEIKIPSTNAFDP
YPAPTAFSENLCKRINVLRPIPPERRTVFLETEDQHAINYQSKTEKERQM
RERFHNAYSRYYYGNSVNREIYRKYLRESLKQQMSEKNSLMSINYKMRQN
ESVEAVRRDQADLEKDMLTCRQRTEFMRQFRDGNKIIMEESMKRKKEELM
REKLIEKQLLQYNPINWSATLK*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000034epidermis
PLANA:0000099neuron
PLANA:0000418head
PLANA:0002032epidermal cell
PLANA:0003116parenchymal cell