TCF15

Overview


Name	TCF15 (AFD29618.1)
Smed ID	SMED30006464
Length (bp)	686

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of TCF15 (SMED30006464) t-SNE clustered cells

Violin plots show distribution of expression levels for TCF15 (SMED30006464) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of TCF15 (SMED30006464) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for TCF15 (SMED30006464) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30006464

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 24

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
zeta neoblast	SMED30006464	h1SMcG0007018	SMED30006464	smed_20140614	PMID:29906446 Zeng et al., 2018
X1 cell	SMED30006464	h1SMcG0007018	SmedASXL_003781	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
Category 2 cell	SMED30006464	h1SMcG0007018	SMED30006464	smed_20140614	PMID:29100657 Cheng et al., 2018
epidermis	SMED30006464	h1SMcG0007018	SMED30006464	smed_20140614	PMID:29100657 Cheng et al., 2018
Category 3 cell	SMED30006464	h1SMcG0007018	SMED30006464	smed_20140614	PMID:29100657 Cheng et al., 2018
neoblast	SMED30006464	h1SMcG0007018	SMED30006464	smed_20140614	PMID:29100657 Cheng et al., 2018
X1 cell	SMED30006464	h1SMcG0007018	SMED30006464	smed_20140614	PMID:29100657 Cheng et al., 2018
nervous system	SMED30006464	h1SMcG0007018	dd_Smed_v4_4998_1_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
gut	SMED30006464	h1SMcG0007018	dd_Smed_v4_4998_1_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30006464	h1SMcG0007018	dd_Smed_v4_4998_1_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30006464	h1SMcG0007018	dd_Smed_v4_4998_1_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30006464	h1SMcG0007018	dd_Smed_v4_4998_1_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30006464	h1SMcG0007018	dd_Smed_v4_4998_1_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30006464	h1SMcG0007018	dd_Smed_v4_4998_1_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
non-ciliated neuron	SMED30006464	h1SMcG0007018	dd_Smed_v4_4998_1_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cilated neuron	SMED30006464	h1SMcG0007018	dd_Smed_v4_4998_1_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
pharynx	SMED30006464	h1SMcG0007018	AFD29618	smed_ncbi_20240424	PMID:24173799 Cowles et al., 2013
progenitor cell	SMED30006464	h1SMcG0007018	AFD29618	smed_ncbi_20240424	PMID:24173799 Cowles et al., 2013
stem cell	SMED30006464	h1SMcG0007018	AFD29618	smed_ncbi_20240424	PMID:24173799 Cowles et al., 2013
parenchyma	SMED30006464	h1SMcG0007018	AFD29618	smed_ncbi_20240424	PMID:24173799 Cowles et al., 2013
neoblast	SMED30006464	h1SMcG0007018	SMED_02941_V2	GPL14150	PMID:22385657 Wagner et al., 2012
neoblast	SMED30006464	h1SMcG0007018	SMED_02941_V2	GPL14150	PMID:22385657 Wagner et al., 2012
neoblast	SMED30006464	h1SMcG0022832	SMED_02941_V2	GPL14150	PMID:22385657 Wagner et al., 2012
neoblast	SMED30006464	h1SMcG0022832	SMED_02941_V2	GPL14150	PMID:22385657 Wagner et al., 2012

Note: Hover over icons to view figure legend

Homology

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BLAST of TCF15 vs. Ensembl Human
Match: TCF15 (transcription factor 15 [Source:HGNC Symbol;Acc:HGNC:11627])

HSP 1 Score: 78.1814 bits (191), Expect = 3.183e-17
Identity = 42/92 (45.65%), Postives = 55/92 (59.78%), Query Frame = -2

Query:  206 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITGSCSID-QPCLKGITEPNLDQSYFKTNPIAVSDLSTDFKSARPVCTFCL 478
            VN AF ALR +IPTEP++RKLSKIET+RLA+SYI HL  +L+ G  + D QPC +             +   AV   +   +  R +CTFCL
Sbjct:   88 VNTAFTALRTLIPTEPVDRKLSKIETVRLASSYIAHLANVLLLGDSADDGQPCFRAAG----------SAKGAVPAAADGGRQPRSICTFCL 169

[Close]

BLAST of TCF15 vs. Ensembl Human
Match: SCX (scleraxis bHLH transcription factor [Source:HGNC Symbol;Acc:HGNC:32322])

HSP 1 Score: 77.411 bits (189), Expect = 7.190e-17
Identity = 46/107 (42.99%), Postives = 62/107 (57.94%), Query Frame = -2

Query:  185 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITG-SCSIDQPCLKGITEPNLDQSYFKTNPIA------VSDLSTDFKSARP--VCTFCLRDFKLLS 478
            VN AF ALR +IPTEP +RKLSKIETLRLA+SYI+HL  +L+ G +C   QPC  G        ++F                + D ++ +P  +CTFCL + + LS
Sbjct:   91 VNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLAGEACGDGQPCHSGP-------AFFHAARAGSPPPPPPPPPARDGENTQPKQICTFCLSNQRKLS 190

[Close]

BLAST of TCF15 vs. Ensembl Human
Match: TAL2 (TAL bHLH transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:11557])

HSP 1 Score: 50.0618 bits (118), Expect = 1.223e-7
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = -2

Query:  329 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITGSCSIDQ 478
            VN AF  LR++IPT P ++KLSK ETLRLA  YIN L  +L  G  S+ Q
Sbjct:   18 VNSAFAKLRKLIPTHPPDKKLSKNETLRLAMRYINFLVKVL--GEQSLQQ 65

[Close]

BLAST of TCF15 vs. Ensembl Human
Match: TWIST1 (twist family bHLH transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:12428])

HSP 1 Score: 50.0618 bits (118), Expect = 2.254e-7
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = -2

Query:  338 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLIT-------GSCS 478
            +NEAF ALR+IIPT P + KLSKI+TL+LAA YI+ L+ +L +        SCS
Sbjct:   57 LNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQSDELDSKMASCS 109

[Close]

BLAST of TCF15 vs. Ensembl Human
Match: TWIST2 (twist family bHLH transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:20670])

HSP 1 Score: 50.0618 bits (118), Expect = 3.174e-7
Identity = 26/41 (63.41%), Postives = 34/41 (82.93%), Query Frame = -2

Query:  356 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLL 478
            +NEAF ALR+IIPT P + KLSKI+TL+LAA YI+ L+ +L
Sbjct:   82 LNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVL 121

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BLAST of TCF15 vs. Ensembl Celegans
Match: hlh-13 (Helix-loop-helix protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q20561])

HSP 1 Score: 45.8246 bits (107), Expect = 2.980e-6
Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = -2

Query:  350 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLIT 478
            +N AF+ LR  IPT P  ++LSKI+TL LA +YIN L  +L T
Sbjct:   57 INVAFIELRNYIPTFPYEKRLSKIDTLNLAIAYINMLDDVLRT 99

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BLAST of TCF15 vs. Ensembl Fly
Match: CG33557 (gene:FBgn0053557 transcript:FBtr0091534)

HSP 1 Score: 67.781 bits (164), Expect = 5.019e-14
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = -2

Query:  320 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITGS-CSIDQPCL 478
            VN A+ ALR +IPTEP+NRKLSKIE +RLA+SYI HL + L TG+ C   QPCL
Sbjct:   77 VNSAYEALRNLIPTEPMNRKLSKIEIIRLASSYITHLSSTLETGTEC---QPCL 127

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BLAST of TCF15 vs. Ensembl Fly
Match: cato (gene:FBgn0024249 transcript:FBtr0087183)

HSP 1 Score: 49.2914 bits (116), Expect = 4.435e-7
Identity = 24/49 (48.98%), Postives = 32/49 (65.31%), Query Frame = -2

Query:  332 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITGSCSID 478
            +N AF  LRE++P   I++KLSK ETL++A SYI  L  LL  G   +D
Sbjct:  119 LNAAFERLREVVPAPSIDQKLSKFETLQMAQSYILALCDLLNNGDVEVD 167

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BLAST of TCF15 vs. Ensembl Zebrafish
Match: scxa (scleraxis bHLH transcription factor a [Source:ZFIN;Acc:ZDB-GENE-060503-414])

HSP 1 Score: 83.1889 bits (204), Expect = 2.652e-19
Identity = 47/101 (46.53%), Postives = 63/101 (62.38%), Query Frame = -2

Query:  185 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITG-SCSIDQPCLKGITEPNLDQSYFKTNPIAVSDLSTDFKSARP--VCTFCLRDFKLLS 478
            VN AF ALR +IPTEP +RKLSKIETLRLA+SYI+HL  +L+ G +C   QPC  G   P+    Y           S D ++++P  +CTFCL + + +S
Sbjct:   95 VNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLVGEACGDGQPCHSG--GPSTSNYYHHHG-----SPSRDSENSQPKQICTFCLSNQRKMS 188

[Close]

BLAST of TCF15 vs. Ensembl Zebrafish
Match: scxb (scleraxis bHLH transcription factor b [Source:ZFIN;Acc:ZDB-GENE-090806-1])

HSP 1 Score: 82.4185 bits (202), Expect = 5.676e-19
Identity = 44/98 (44.90%), Postives = 61/98 (62.24%), Query Frame = -2

Query:  188 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITG-SCSIDQPCLKGITEPNLDQSYFKTNPIAVSDLSTDFKSARPVCTFCLRDFKLL 478
            VN AF ALR +IPTEP +RKLSKIETLRLA+SYI+HL  +L+ G  C   QPCL+  +  +L   +   +  +     ++    R +CTFCL + + L
Sbjct:   93 VNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLVGEECGDGQPCLR--SSGSLFHHHHNVSKSSTPSPDSENSQPRQICTFCLSNQRRL 188

[Close]

BLAST of TCF15 vs. Ensembl Zebrafish
Match: si:ch211-246m6.4 (si:ch211-246m6.4 [Source:ZFIN;Acc:ZDB-GENE-050208-498])

HSP 1 Score: 81.2629 bits (199), Expect = 1.166e-18
Identity = 47/100 (47.00%), Postives = 62/100 (62.00%), Query Frame = -2

Query:  188 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITGS-CSIDQPCLK--GITEPNLDQSYFKTNPIAVSDLSTDFKSARPVCTFCLRDFKLL 478
            VN AF +LR +IPTEP +RKLSKIETLRLA+SYI+HL  +L+ G  C   QPCLK   I + N +    K+ P+            RP+CTFCL + + +
Sbjct:   99 VNTAFTSLRTLIPTEPADRKLSKIETLRLASSYISHLANVLLLGEDCRDGQPCLKYHNILQSNAN---LKSPPV------------RPICTFCLSNQRKM 183

[Close]

BLAST of TCF15 vs. Ensembl Zebrafish
Match: tcf15 (transcription factor 15 [Source:ZFIN;Acc:ZDB-GENE-980605-20])

HSP 1 Score: 81.2629 bits (199), Expect = 1.174e-18
Identity = 43/92 (46.74%), Postives = 54/92 (58.70%), Query Frame = -2

Query:  206 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITGSCSID-QPCLKGITEPNLDQSYFKTNPIAVSDLSTDFKSARPVCTFCL 478
            VN AF ALR +IPTEP++RKLSKIETLRLA+SYI+HL  +L+ G    D QPC+  +     D               +  K  R +CTFCL
Sbjct:   80 VNTAFTALRTLIPTEPVDRKLSKIETLRLASSYISHLANVLLIGDGGEDAQPCVSAVYSAQGD---------------SGGKQPRTICTFCL 156

[Close]

BLAST of TCF15 vs. Ensembl Zebrafish
Match: CR626923.2 (scleraxis bHLH transcription factor b [Source:NCBI gene;Acc:567817])

HSP 1 Score: 80.1073 bits (196), Expect = 3.864e-18
Identity = 46/100 (46.00%), Postives = 62/100 (62.00%), Query Frame = -2

Query:  188 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITG-SCSIDQPCLKGITEPNLDQSYFKTNPIAVSDLSTDFKSARP--VCTFCLRDFKLL 478
            VN AF ALR +IPTEP +RKLSKIETLRLA+SYI+HL  +L+ G  C   QPCL+              +  + S  S D ++++P  +CTFCL + + L
Sbjct:   93 VNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLVGEECGDGQPCLR--------------SSGSFSTPSPDSENSQPRQICTFCLSNQRRL 178

[Close]

BLAST of TCF15 vs. Ensembl Xenopus
Match: mrps15 (mitochondrial ribosomal protein S15 [Source:Xenbase;Acc:XB-GENE-1016472])

HSP 1 Score: 84.3445 bits (207), Expect = 2.843e-19
Identity = 48/102 (47.06%), Postives = 62/102 (60.78%), Query Frame = -2

Query:  188 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITG-SCSIDQPCLKGITEPNLDQSYFKTNPIA--VSDLSTDFKSARP--VCTFCLRDFKLL 478
            VN AF ALR +IPTEP +RKLSKIETLRLA+SYI+HL  +L+ G +C   QPC  G         Y+  +P A   S    D +  +P  +CTFCL + + L
Sbjct:   79 VNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLLGDTCGDGQPCHTG-------GPYYPPHPAAATASPKHRDGEQGQPKQICTFCLSNQRKL 173

[Close]

BLAST of TCF15 vs. Ensembl Xenopus
Match: tcf15 (transcription factor 15 [Source:NCBI gene;Acc:549260])

HSP 1 Score: 79.7221 bits (195), Expect = 2.971e-18
Identity = 43/92 (46.74%), Postives = 53/92 (57.61%), Query Frame = -2

Query:  206 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITG-SCSIDQPCLKGITEPNLDQSYFKTNPIAVSDLSTDFKSARPVCTFCL 478
            VN AF ALR +IPTEP++RKLSKIETLRLA+SYI+HL  +L+ G  C   QPC   +                     +D K  R +CTFCL
Sbjct:   78 VNTAFTALRTLIPTEPVDRKLSKIETLRLASSYISHLANVLLLGEGCQDGQPCFSTVYRAK----------------DSDGKVPRSICTFCL 153

[Close]

BLAST of TCF15 vs. Ensembl Xenopus
Match: hnrnpc (heterogeneous nuclear ribonucleoprotein C (C1/C2) [Source:Xenbase;Acc:XB-GENE-489141])

HSP 1 Score: 79.337 bits (194), Expect = 7.355e-18
Identity = 43/92 (46.74%), Postives = 53/92 (57.61%), Query Frame = -2

Query:  206 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITG-SCSIDQPCLKGITEPNLDQSYFKTNPIAVSDLSTDFKSARPVCTFCL 478
            VN AF ALR +IPTEP++RKLSKIETLRLA+SYI+HL  +L+ G  C   QPC   +                     +D K  R +CTFCL
Sbjct:   78 VNTAFTALRTLIPTEPVDRKLSKIETLRLASSYISHLANVLLLGEGCQDGQPCFSTVYRAK----------------DSDGKVPRSICTFCL 153

[Close]

BLAST of TCF15 vs. Ensembl Xenopus
Match: adra1d (adrenoceptor alpha 1D [Source:Xenbase;Acc:XB-GENE-6050827])

HSP 1 Score: 78.9518 bits (193), Expect = 1.739e-17
Identity = 44/98 (44.90%), Postives = 60/98 (61.22%), Query Frame = -2

Query:  188 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITGS-CSIDQPCLKGITEPNLDQSYFKTNPIAVSDLSTDFKSARPVCTFCLRDFKLL 478
            VN AF ALR +IPTEP +RKLSKIETLRLA+SYI+HL  +L+ G  C   QPCL+           ++++  +         + RP+CTFCL + + L
Sbjct:  118 VNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLANILLLGEDCMDGQPCLQ-----------YRSSMASA--------APRPICTFCLSNQRKL 196

[Close]

BLAST of TCF15 vs. Ensembl Xenopus
Match: gsk3b (glycogen synthase kinase 3 beta [Source:Xenbase;Acc:XB-GENE-487098])

HSP 1 Score: 51.2174 bits (121), Expect = 2.115e-7
Identity = 36/76 (47.37%), Postives = 45/76 (59.21%), Query Frame = -2

Query:  344 SITNFNFNFLLSKMGIXXXXXXXXXXXXXXSVNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITGS 571
            S T      L  K+G  K +  ++ER RT S+N AF  LRE IP  P + KLSKI+TLRLA SYI +L  +L   S
Sbjct:   65 SQTPGRMETLGGKLGRRKGAPPKKERRRTESINSAFAELRECIPNVPADTKLSKIKTLRLATSYIGYLMDVLAKDS 140

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BLAST of TCF15 vs. Ensembl Mouse
Match: Tcf15 (transcription factor 15 [Source:MGI Symbol;Acc:MGI:104664])

HSP 1 Score: 79.7221 bits (195), Expect = 6.248e-18
Identity = 44/92 (47.83%), Postives = 55/92 (59.78%), Query Frame = -2

Query:  206 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITGSCSID-QPCLKGITEPNLDQSYFKTNPIAVSDLSTDFKSARPVCTFCL 478
            VN AF ALR +IPTEP++RKLSKIETLRLA+SYI HL  +L+ G  + D QPC +                 AV   + D +  R +CTFCL
Sbjct:   86 VNTAFTALRTLIPTEPVDRKLSKIETLRLASSYIAHLANVLLLGDAADDGQPCFRAAG----------GGKSAVP--AADGRQPRSICTFCL 165

[Close]

BLAST of TCF15 vs. Ensembl Mouse
Match: Scx (scleraxis [Source:MGI Symbol;Acc:MGI:102934])

HSP 1 Score: 75.8702 bits (185), Expect = 1.984e-16
Identity = 46/103 (44.66%), Postives = 59/103 (57.28%), Query Frame = -2

Query:  185 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITG-SCSIDQPCLKGIT--EPNLDQSYFKTNPIAVSDLSTDFKSARP--VCTFCLRDFKLLS 478
            VN AF ALR +IPTEP +RKLSKIETLRLA+SYI+HL  +L+ G +C   QPC  G          S     P          ++ +P  +CTFCL + + LS
Sbjct:   94 VNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLVGEACGDGQPCHSGPAFFHSGRAGSPLPPPPPPPPLARDGGENTQPKQICTFCLSNQRKLS 196

[Close]

BLAST of TCF15 vs. Ensembl Mouse
Match: Tal2 (T cell acute lymphocytic leukemia 2 [Source:MGI Symbol;Acc:MGI:99540])

HSP 1 Score: 50.0618 bits (118), Expect = 1.007e-7
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = -2

Query:  329 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITGSCSIDQ 478
            VN AF  LR++IPT P ++KLSK ETLRLA  YIN L  +L  G  S+ Q
Sbjct:   18 VNNAFAKLRKLIPTHPPDKKLSKNETLRLAMRYINFLVKVL--GEQSLHQ 65

[Close]

BLAST of TCF15 vs. Ensembl Mouse
Match: Twist2 (twist basic helix-loop-helix transcription factor 2 [Source:MGI Symbol;Acc:MGI:104685])

HSP 1 Score: 50.0618 bits (118), Expect = 2.179e-7
Identity = 26/41 (63.41%), Postives = 34/41 (82.93%), Query Frame = -2

Query:  356 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLL 478
            +NEAF ALR+IIPT P + KLSKI+TL+LAA YI+ L+ +L
Sbjct:   82 LNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVL 121

[Close]

Query:  356 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLL 478
            +NEAF ALR+IIPT P + KLSKI+TL+LAA YI+ L+ +L
Sbjct:   82 LNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVL 121

[Close]

BLAST of TCF15 vs. UniProt/SwissProt
Match: sp|P79782|TCF15_CHICK (Transcription factor 15 OS=Gallus gallus OX=9031 GN=TCF15 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.755e-18
Identity = 46/92 (50.00%), Postives = 54/92 (58.70%), Query Frame = -2

Query:  206 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITG-SCSIDQPCLKGITEPNLDQSYFKTNPIAVSDLSTDFKSARPVCTFCL 478
            VN AF ALR +IPTEP++RKLSKIETLRLA+SYI HL  +L+ G  C   QPC   I               A  DL  D +  R +CTFCL
Sbjct:   77 VNTAFTALRTLIPTEPVDRKLSKIETLRLASSYIAHLANVLLLGEGCEDGQPCFSAIYG-------------AKGDL--DGRQPRSICTFCL 153

[Close]

BLAST of TCF15 vs. UniProt/SwissProt
Match: sp|Q60756|TCF15_MOUSE (Transcription factor 15 OS=Mus musculus OX=10090 GN=Tcf15 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 4.370e-17
Identity = 44/92 (47.83%), Postives = 55/92 (59.78%), Query Frame = -2

Query:  206 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITGSCSID-QPCLKGITEPNLDQSYFKTNPIAVSDLSTDFKSARPVCTFCL 478
            VN AF ALR +IPTEP++RKLSKIETLRLA+SYI HL  +L+ G  + D QPC +                 AV   + D +  R +CTFCL
Sbjct:   86 VNTAFTALRTLIPTEPVDRKLSKIETLRLASSYIAHLANVLLLGDAADDGQPCFRAAG----------GGKSAVP--AADGRQPRSICTFCL 165

[Close]

BLAST of TCF15 vs. UniProt/SwissProt
Match: sp|Q60539|TCF15_MESAU (Transcription factor 15 OS=Mesocricetus auratus OX=10036 GN=TCF15 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.556e-17
Identity = 44/92 (47.83%), Postives = 55/92 (59.78%), Query Frame = -2

Query:  206 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITGSCSID-QPCLKGITEPNLDQSYFKTNPIAVSDLSTDFKSARPVCTFCL 478
            VN AF ALR +IPTEP++RKLSKIETLRLA+SYI HL  +L+ G  + D QPC +                 AV   + D +  R +CTFCL
Sbjct:   86 VNTAFTALRTLIPTEPVDRKLSKIETLRLASSYIAHLANVLMLGDAADDGQPCFRAAG----------GGKSAVP--AADGRQPRSICTFCL 165

[Close]

BLAST of TCF15 vs. UniProt/SwissProt
Match: sp|Q12870|TCF15_HUMAN (Transcription factor 15 OS=Homo sapiens OX=9606 GN=TCF15 PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.528e-16
Identity = 42/92 (45.65%), Postives = 55/92 (59.78%), Query Frame = -2

Query:  206 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITGSCSID-QPCLKGITEPNLDQSYFKTNPIAVSDLSTDFKSARPVCTFCL 478
            VN AF ALR +IPTEP++RKLSKIET+RLA+SYI HL  +L+ G  + D QPC +             +   AV   +   +  R +CTFCL
Sbjct:   88 VNTAFTALRTLIPTEPVDRKLSKIETVRLASSYIAHLANVLLLGDSADDGQPCFRAAG----------SAKGAVPAAADGGRQPRSICTFCL 169

[Close]

BLAST of TCF15 vs. UniProt/SwissProt
Match: sp|P59101|SCX_CHICK (Basic helix-loop-helix transcription factor scleraxis OS=Gallus gallus OX=9031 GN=SCX PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.590e-16
Identity = 48/101 (47.52%), Postives = 64/101 (63.37%), Query Frame = -2

Query:  185 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITG-SCSIDQPCLKGITEPNLDQSYFKTNPIAVSDLSTDFKSARP--VCTFCLRDFKLLS 478
            VN AF ALR +IPTEP +RKLSKIETLRLA+SYI+HL  +L+ G +C   QPC    T P    ++F       S    D ++++P  +CTFCL + + LS
Sbjct:   83 VNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLVGEACGDGQPCH---TSP----AFFHHGGGGGSPPPRDSENSQPKQICTFCLSNQRKLS 176

[Close]

BLAST of TCF15 vs. TrEMBL
Match: H9CXU7 (TCF15 OS=Schmidtea mediterranea OX=79327 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 3.596e-65
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = -2

Query:  185 MGIXXXXXXXXXXXXXXSVNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITGSCSIDQPCLKGITEPNLDQSYFKTNPIAVSDLSTDFKSARPVCTFCLRDFKLLS 532
            MGISKRSAKERERSRTASVNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITGSCSIDQPCLKGITEPNLDQSYFKTNPIAVSDLSTDFKSARPVCTFCLRDFKLLS
Sbjct:    1 MGISKRSAKERERSRTASVNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITGSCSIDQPCLKGITEPNLDQSYFKTNPIAVSDLSTDFKSARPVCTFCLRDFKLLS 116

[Close]

BLAST of TCF15 vs. TrEMBL
Match: A0A3S5BHC2 (BHLH domain-containing protein OS=Protopolystoma xenopodis OX=117903 GN=PXEA_LOCUS17715 PE=4 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.447e-24
Identity = 51/106 (48.11%), Postives = 68/106 (64.15%), Query Frame = -2

Query:  194 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITGSCSIDQPCLKGITEPNLD-----QSYFKTNPIAVSDLSTDF------KSARPVCTFCLRDFK 478
            VN+AFL LR +IPTEP+NRKLSKIETLRLAASYI+HLH +L+TGS  ++QPCL+    P+       Q+      +  + +S          + RPVCTFC+ + K
Sbjct:   83 VNDAFLLLRSLIPTEPVNRKLSKIETLRLAASYISHLHAILVTGSSGLEQPCLRHTMSPSCSTGQCLQAQMTLETVPATAVSAGLGGRQTVATHRPVCTFCMTEVK 188

[Close]

BLAST of TCF15 vs. TrEMBL
Match: A0A4E0RTF3 (Protein boule OS=Fasciola hepatica OX=6192 GN=D915_005126 PE=4 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 6.685e-23
Identity = 55/102 (53.92%), Postives = 69/102 (67.65%), Query Frame = -2

Query:  194 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITGSCSIDQPCLKGIT-EPNLDQ------SYFKTNPIAVSDLSTDFKSARPVCTFCLRDFK 478
            VN+AFL LR +IPTEP+NRKLSKIETLRLA+SYI+HLH +L+TGS   DQPCL+     P + Q      S   T  +  + L  D +S RPVCTFC+ + K
Sbjct:   95 VNDAFLMLRRLIPTEPMNRKLSKIETLRLASSYISHLHAVLVTGSNPADQPCLRHQQLAPAMCQHDRCPTSAITTQNVIRTPLGGD-RSHRPVCTFCVTEMK 195

[Close]

BLAST of TCF15 vs. TrEMBL
Match: A0A2H1CBE8 (Helix-loop-helix DNA-binding domain protein OS=Fasciola hepatica OX=6192 GN=D915_08122 PE=4 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 8.384e-23
Identity = 55/102 (53.92%), Postives = 69/102 (67.65%), Query Frame = -2

Query:  194 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITGSCSIDQPCLKGIT-EPNLDQ------SYFKTNPIAVSDLSTDFKSARPVCTFCLRDFK 478
            VN+AFL LR +IPTEP+NRKLSKIETLRLA+SYI+HLH +L+TGS   DQPCL+     P + Q      S   T  +  + L  D +S RPVCTFC+ + K
Sbjct:   87 VNDAFLMLRRLIPTEPMNRKLSKIETLRLASSYISHLHAVLVTGSNPADQPCLRHQQLAPAMCQHDRCPTSAITTQNVIRTPLGGD-RSHRPVCTFCVTEMK 187

[Close]

BLAST of TCF15 vs. TrEMBL
Match: A0A504YFW7 (Protein boule OS=Fasciola gigantica OX=46835 GN=FGIG_10882 PE=4 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.109e-22
Identity = 55/102 (53.92%), Postives = 69/102 (67.65%), Query Frame = -2

Query:  194 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITGSCSIDQPCLKGIT-EPNLDQ------SYFKTNPIAVSDLSTDFKSARPVCTFCLRDFK 478
            VN+AFL LR +IPTEP+NRKLSKIETLRLA+SYI+HLH +L+TGS   DQPCL+     P + Q      S   T  +  + L  D +S RPVCTFC+ + K
Sbjct:   94 VNDAFLMLRRLIPTEPMNRKLSKIETLRLASSYISHLHAVLVTGSNPADQPCLRHQQLAPVVCQHDRCPTSAITTQKVIRTPLGGD-RSHRPVCTFCVTEMK 194

[Close]

BLAST of TCF15 vs. Ensembl Cavefish
Match: scxa (scleraxis bHLH transcription factor a [Source:ZFIN;Acc:ZDB-GENE-060503-414])

HSP 1 Score: 82.8037 bits (203), Expect = 3.011e-19
Identity = 45/98 (45.92%), Postives = 59/98 (60.20%), Query Frame = -2

Query:  188 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITG-SCSIDQPCLKGITEPNLDQSYFKTNPIAVSDLSTDFKSARPVCTFCLRDFKLL 478
            VN AF ALR +IPTEP +RKLSKIETLRLA+SYI+HL  +L+ G  C   QPC  G        SY+  +     D  T+    + +CTFCL + + +
Sbjct:   94 VNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLVGEGCGDGQPCHSG----GPSASYYHHHGSPGRD--TENSQPKQICTFCLSNQRKM 185

[Close]

BLAST of TCF15 vs. Ensembl Cavefish
Match: scxb (basic helix-loop-helix transcription factor scleraxis-like [Source:NCBI gene;Acc:103029811])

HSP 1 Score: 81.2629 bits (199), Expect = 1.141e-18
Identity = 47/100 (47.00%), Postives = 66/100 (66.00%), Query Frame = -2

Query:  188 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITG-SCSIDQPCLKGITEPNLDQSYFKTNPIAVSDLSTDFKSARP--VCTFCLRDFKLL 478
            VN AF ALR +IPTEP +RKLSKIETLRLA+SYI+HL  +L+ G +C+  QPC +    P    ++  + P   S  S D ++++P  +CTFCL + + L
Sbjct:   94 VNVAFTALRTLIPTEPADRKLSKIETLRLASSYISHLENVLLVGEACADGQPCHRS---PAALHNHLHS-PHKPSAPSPDSENSQPRQICTFCLSNQRRL 189

[Close]

BLAST of TCF15 vs. Ensembl Cavefish
Match: si:ch211-246m6.4 (transcription factor 15-like [Source:NCBI gene;Acc:103034626])

HSP 1 Score: 79.7221 bits (195), Expect = 3.411e-18
Identity = 45/94 (47.87%), Postives = 57/94 (60.64%), Query Frame = -2

Query:  206 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITG-SCSIDQPCL--KGITEPNLDQSYFKTNPIAVSDLSTDFKSARPVCTFCL 478
            VN AF ALR +IPTEP +RKLSKIETLRLA+SYI HL  +L+ G +C   QPCL  +G+ +    ++                 S RP+CTFCL
Sbjct:   93 VNTAFSALRTLIPTEPADRKLSKIETLRLASSYIAHLANVLLLGETCRDGQPCLQYRGVLQGGATRA-----------------SLRPICTFCL 169

[Close]

BLAST of TCF15 vs. Ensembl Cavefish
Match: si:ch211-246m6.4 (transcription factor 15-like [Source:NCBI gene;Acc:103034626])

HSP 1 Score: 79.337 bits (194), Expect = 6.481e-18
Identity = 45/94 (47.87%), Postives = 57/94 (60.64%), Query Frame = -2

Query:  206 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITG-SCSIDQPCL--KGITEPNLDQSYFKTNPIAVSDLSTDFKSARPVCTFCL 478
            VN AF ALR +IPTEP +RKLSKIETLRLA+SYI HL  +L+ G +C   QPCL  +G+ +    ++                 S RP+CTFCL
Sbjct:   93 VNTAFSALRTLIPTEPADRKLSKIETLRLASSYIAHLANVLLLGETCRDGQPCLQYRGVLQGGATRA-----------------SLRPICTFCL 169

[Close]

BLAST of TCF15 vs. Ensembl Cavefish
Match: tcf15 (transcription factor 15 [Source:NCBI gene;Acc:103040145])

HSP 1 Score: 77.0258 bits (188), Expect = 3.328e-17
Identity = 43/92 (46.74%), Postives = 52/92 (56.52%), Query Frame = -2

Query:  206 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITGSCSID-QPCLKGITEPNLDQSYFKTNPIAVSDLSTDFKSARPVCTFCL 478
            VN AF ALR +IPTEP++RKLSKIETLRLA+SYI+HL  +L+TG      QPCL      +                    K  R +CTFCL
Sbjct:   77 VNTAFTALRTLIPTEPVDRKLSKIETLRLASSYISHLANVLLTGDAGEHAQPCLSAHCRGD-----------------GGGKQPRTICTFCL 151

[Close]

BLAST of TCF15 vs. Ensembl Sea Lamprey
Match: scxa (scleraxis bHLH transcription factor a [Source:ZFIN;Acc:ZDB-GENE-060503-414])

HSP 1 Score: 58.5362 bits (140), Expect = 2.631e-11
Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = -2

Query:  353 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLI 478
            VN AF ALR +IPTEP +RKLSK+ETL LA+SYI HL   L+
Sbjct:   52 VNSAFTALRTLIPTEPADRKLSKLETLLLASSYIAHLGNTLL 93

[Close]

BLAST of TCF15 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000011442.1 (pep scaffold:Pmarinus_7.0:GL478554:30221:30385:-1 gene:ENSPMAG00000010415.1 transcript:ENSPMAT00000011442.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 46.595 bits (109), Expect = 6.660e-8
Identity = 24/41 (58.54%), Postives = 33/41 (80.49%), Query Frame = -2

Query:  356 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLL 478
            +NEAF +LR+IIPT P + KLSKI+TL+LA  YI+ L+ +L
Sbjct:    9 LNEAFSSLRQIIPTLP-SDKLSKIQTLKLATRYIDFLYQVL 48

[Close]

BLAST of TCF15 vs. Ensembl Sea Lamprey
Match: TWIST1 (twist family bHLH transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:12428])

HSP 1 Score: 47.3654 bits (111), Expect = 1.185e-7
Identity = 24/41 (58.54%), Postives = 34/41 (82.93%), Query Frame = -2

Query:  356 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLL 478
            +NEAF +LR+IIPT P + KLSKI+TL+LA+ YI+ L+ +L
Sbjct:   24 LNEAFASLRKIIPTLPSD-KLSKIQTLKLASRYIDFLYQVL 63

[Close]

BLAST of TCF15 vs. Ensembl Sea Lamprey
Match: TWIST1 (twist family bHLH transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:12428])

HSP 1 Score: 48.1358 bits (113), Expect = 2.238e-7
Identity = 24/42 (57.14%), Postives = 33/42 (78.57%), Query Frame = -2

Query:  353 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLI 478
            +NEAF +LR+IIPT P + KLSKI+TL+LA  YI+ L+ +L 
Sbjct:  111 LNEAFASLRQIIPTLPSD-KLSKIQTLKLATRYIDFLYQVLA 151

[Close]

BLAST of TCF15 vs. Ensembl Sea Lamprey
Match: TWIST1 (twist family bHLH transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:12428])

HSP 1 Score: 48.1358 bits (113), Expect = 2.990e-7
Identity = 24/41 (58.54%), Postives = 33/41 (80.49%), Query Frame = -2

Query:  356 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLL 478
            +NEAF +LR+IIPT P + KLSKI+TL+LA  YI+ L+ +L
Sbjct:  129 LNEAFASLRQIIPTLPSD-KLSKIQTLKLATRYIDFLYQVL 168

[Close]

BLAST of TCF15 vs. Ensembl Nematostella
Match: EDO42924 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RZZ0])

HSP 1 Score: 67.0106 bits (162), Expect = 3.989e-15
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = -2

Query:  344 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITGS 478
            VN AF ALR +IPTEP +RKLSKIETLRLA+SYI HL T+LI+G+
Sbjct:   17 VNAAFNALRLLIPTEPSDRKLSKIETLRLASSYIAHLSTILISGT 61

[Close]

BLAST of TCF15 vs. Ensembl Nematostella
Match: NVAS-C1 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S6C2])

HSP 1 Score: 53.5286 bits (127), Expect = 5.267e-10
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = -2

Query:  356 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLL 478
            V++ F ALR+ IPT P+N+KLSK+ETLR A  YI HL  +L
Sbjct:   21 VSDGFAALRKHIPTTPVNKKLSKVETLRTAIEYIKHLQRIL 61

[Close]

BLAST of TCF15 vs. Ensembl Nematostella
Match: NVAS-C2 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T1A5])

HSP 1 Score: 51.6026 bits (122), Expect = 2.938e-9
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = -2

Query:  356 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLL 478
            VNE +  LRE +P EP ++++SK+ETLR A  YI HL +LL
Sbjct:   25 VNEGYARLREHLPEEPSDKRMSKVETLRAAIRYIKHLESLL 65

[Close]

BLAST of TCF15 vs. Ensembl Nematostella
Match: EDO43849 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RXI0])

HSP 1 Score: 46.595 bits (109), Expect = 1.479e-7
Identity = 21/41 (51.22%), Postives = 29/41 (70.73%), Query Frame = -2

Query:  356 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLL 478
            +NEAF  LR+ IPT P  ++LSK++TLRLA  YI  L  ++
Sbjct:   18 INEAFEGLRKHIPTLPYEKRLSKVDTLRLAIGYIGFLTEMI 58

[Close]

BLAST of TCF15 vs. Ensembl Nematostella
Match: EDO38292 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SDD5])

HSP 1 Score: 48.521 bits (114), Expect = 2.211e-7
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = -2

Query:  356 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLL 478
            VN+ F +LR+ IP  P  +KLSK+ETLR A +YI HL +L+
Sbjct:   86 VNDGFSSLRQHIPYFPEKKKLSKVETLRCAVAYIKHLQSLI 126

[Close]

BLAST of TCF15 vs. Ensembl Medaka
Match: tcf15 (transcription factor 15 [Source:NCBI gene;Acc:101172734])

HSP 1 Score: 85.5001 bits (210), Expect = 2.013e-20
Identity = 44/92 (47.83%), Postives = 56/92 (60.87%), Query Frame = -2

Query:  206 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITG-SCSIDQPCLKGITEPNLDQSYFKTNPIAVSDLSTDFKSARPVCTFCL 478
            VN AF ALR +IPTEP++RKLSKIETLRLA+SYI+HL  +L+TG  C+  QPCL G  +                   +  +  R +CTFCL
Sbjct:   78 VNTAFTALRTLIPTEPVDRKLSKIETLRLASSYISHLANVLLTGDGCADGQPCLGGHAQGE-----------------SGGRQPRTICTFCL 152

[Close]

BLAST of TCF15 vs. Ensembl Medaka
Match: scxb (scleraxis bHLH transcription factor [Source:NCBI gene;Acc:101167982])

HSP 1 Score: 78.5666 bits (192), Expect = 1.731e-17
Identity = 47/98 (47.96%), Postives = 61/98 (62.24%), Query Frame = -2

Query:  188 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITGSCSID-QPCLKGITEPNLDQSYFKTNPIAVSDLSTDFKSARPVCTFCLRDFKLL 478
            VN AF ALR +IPTEP +RKLSKIETLRLA+SYI+HL  +L+ G    D QPC      P+    +  ++P   SD ST  K    +CTFCL + + +
Sbjct:  112 VNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLLGEGLHDGQPCHA----PSPPFFHVSSSPTRGSDQSTQPKH---ICTFCLSNQRRM 202

[Close]

BLAST of TCF15 vs. Ensembl Medaka
Match: ENSORLT00000017495.2 (pep primary_assembly:ASM223467v1:4:24388791:24389132:-1 gene:ENSORLG00000013953.2 transcript:ENSORLT00000017495.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 49.6766 bits (117), Expect = 8.897e-8
Identity = 31/66 (46.97%), Postives = 37/66 (56.06%), Query Frame = -2

Query:  296 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLL-----ITGSCSIDQPCLKGITEPNL 478
            VN AF  LR +IPT P +RKLSK E LRLA  YI  L  LL       G  + ++  L+G   PNL
Sbjct:   18 VNGAFAELRRLIPTHPPDRKLSKNEILRLALRYIRFLDQLLSEQDPQDGDPAEEEHRLQGELSPNL 83

[Close]

BLAST of TCF15 vs. Ensembl Medaka
Match: ptf1a (pancreas associated transcription factor 1a [Source:NCBI gene;Acc:101160350])

HSP 1 Score: 49.2914 bits (116), Expect = 7.397e-7
Identity = 35/97 (36.08%), Postives = 49/97 (50.52%), Query Frame = -2

Query:  227 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITG-------SCSIDQP-----CLKGITEPNLDQSYFKTNPIAVSDLS-TDFKSAR 478
            +N+AF  LR  IPT P  ++LSK++TLRLA  YIN L  L+ +        S +  QP     C +G   P+     +   P+A   LS +D K  R
Sbjct:  134 INDAFEGLRSHIPTLPYEKRLSKVDTLRLAIGYINFLAELVQSDLPIRNSNSDAHAQPKKVIICHRGTRSPSPSDPDYGLPPLAGHSLSWSDEKQLR 230

[Close]

BLAST of TCF15 vs. Ensembl Medaka
Match: ENSORLT00000005014.2 (twist family bHLH transcription factor 1 [Source:NCBI gene;Acc:101173479])

HSP 1 Score: 48.521 bits (114), Expect = 8.159e-7
Identity = 25/41 (60.98%), Postives = 34/41 (82.93%), Query Frame = -2

Query:  356 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLL 478
            +NEAF +LR+IIPT P + KLSKI+TL+LAA YI+ L+ +L
Sbjct:  106 LNEAFTSLRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVL 145

[Close]

BLAST of TCF15 vs. Planmine SMEST
Match: SMESG000044395.1 (SMESG000044395.1)

HSP 1 Score: 205.297 bits (521), Expect = 4.049e-68
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = -2

Query:  188 MGIXXXXXXXXXXXXXXSVNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITGSCSIDQPCLKGITEPNLDQSYFKTNPIAVSDLSTDFKSARPVCTFCLRDFKLL 532
            MGISKRSAKERERSRTASVNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITGSCSIDQPCLKGITEPNLDQSYFKTNPIAVSDLSTDFKSARPVCTFCLRDFKLL
Sbjct:    1 MGISKRSAKERERSRTASVNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITGSCSIDQPCLKGITEPNLDQSYFKTNPIAVSDLSTDFKSARPVCTFCLRDFKLL 115

[Close]

BLAST of TCF15 vs. Planmine SMEST
Match: SMESG000079648.1 (SMESG000079648.1)

HSP 1 Score: 50.0618 bits (118), Expect = 2.866e-7
Identity = 25/45 (55.56%), Postives = 31/45 (68.89%), Query Frame = -2

Query:  344 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITGS 478
            +NEAF  LR  IPT P  ++LSK++TLRLA  YIN L  L+ T S
Sbjct:  118 INEAFEGLRAHIPTLPYEKRLSKVDTLRLAIGYINFLQDLVKTES 162

[Close]

BLAST of TCF15 vs. Planmine SMEST
Match: SMESG000000956.1 (SMESG000000956.1)

HSP 1 Score: 48.521 bits (114), Expect = 1.026e-6
Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = -2

Query:  332 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLLITGSCSID 478
            +NEAF  LR  IPT P  ++LSK++TLRLA SYI  L  L+ +   S++
Sbjct:  118 INEAFEGLRCHIPTMPYEKRLSKVDTLRLAISYIGFLQELIKSDCGSLE 166

[Close]

BLAST of TCF15 vs. Planmine SMEST
Match: SMESG000045286.1 (SMESG000045286.1)

HSP 1 Score: 45.8246 bits (107), Expect = 9.191e-6
Identity = 22/41 (53.66%), Postives = 29/41 (70.73%), Query Frame = -2

Query:  356 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLL 478
            +N AF  LR  +PT P  R+LSKI+TLRLA +YI+ L  L+
Sbjct:   66 INTAFAELRSRVPTFPYERRLSKIDTLRLAIAYISLLQDLV 106

[Close]

BLAST of TCF15 vs. Planmine SMEST
Match: SMESG000044960.1 (SMESG000044960.1)

HSP 1 Score: 45.0542 bits (105), Expect = 9.557e-6
Identity = 20/41 (48.78%), Postives = 29/41 (70.73%), Query Frame = -2

Query:  356 VNEAFLALREIIPTEPINRKLSKIETLRLAASYINHLHTLL 478
            +N+AF  LR  IPT P  ++LSK++TLR+A  YIN L  ++
Sbjct:   62 INDAFEKLRVHIPTMPYEKRLSKVDTLRMAIGYINFLGGIM 102

The following BLAST results are available for this feature:

BLAST of TCF15 vs. Ensembl Human
BLAST of TCF15 vs. Ensembl Celegans
BLAST of TCF15 vs. Ensembl Fly
BLAST of TCF15 vs. Ensembl Zebrafish
BLAST of TCF15 vs. Ensembl Xenopus
BLAST of TCF15 vs. Ensembl Mouse
BLAST of TCF15 vs. UniProt/SwissProt
BLAST of TCF15 vs. TrEMBL
BLAST of TCF15 vs. Ensembl Cavefish
BLAST of TCF15 vs. Ensembl Sea Lamprey
BLAST of TCF15 vs. Ensembl Yeast
BLAST of TCF15 vs. Ensembl Nematostella
BLAST of TCF15 vs. Ensembl Medaka
BLAST of TCF15 vs. Planmine SMEST

BLAST of TCF15 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
TCF15	3.183e-17	45.65	transcription factor 15 [Source:HGNC Symbol;Acc:HG...	[more]
SCX	7.190e-17	42.99	scleraxis bHLH transcription factor [Source:HGNC S...	[more]
TAL2	1.223e-7	56.00	TAL bHLH transcription factor 2 [Source:HGNC Symbo...	[more]
TWIST1	2.254e-7	53.70	twist family bHLH transcription factor 1 [Source:H...	[more]
TWIST2	3.174e-7	63.41	twist family bHLH transcription factor 2 [Source:H...	[more]

BLAST of TCF15 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1


Match Name	E-value	Identity	Description
hlh-13	2.980e-6	53.49	Helix-loop-helix protein 13 [Source:UniProtKB/Swi...	[more]

BLAST of TCF15 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2


Match Name	E-value	Identity	Description
CG33557	5.019e-14	64.81	gene:FBgn0053557 transcript:FBtr0091534	[more]
cato	4.435e-7	48.98	gene:FBgn0024249 transcript:FBtr0087183	[more]

BLAST of TCF15 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
scxa	2.652e-19	46.53	scleraxis bHLH transcription factor a [Source:ZFIN...	[more]
scxb	5.676e-19	44.90	scleraxis bHLH transcription factor b [Source:ZFIN...	[more]
si:ch211-246m6.4	1.166e-18	47.00	si:ch211-246m6.4 [Source:ZFIN;Acc:ZDB-GENE-050208-...	[more]
tcf15	1.174e-18	46.74	transcription factor 15 [Source:ZFIN;Acc:ZDB-GENE-...	[more]
CR626923.2	3.864e-18	46.00	scleraxis bHLH transcription factor b [Source:NCBI...	[more]

BLAST of TCF15 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
mrps15	2.843e-19	47.06	mitochondrial ribosomal protein S15 [Source:Xenbas...	[more]
tcf15	2.971e-18	46.74	transcription factor 15 [Source:NCBI gene;Acc:5492...	[more]
hnrnpc	7.355e-18	46.74	heterogeneous nuclear ribonucleoprotein C (C1/C2) ...	[more]
adra1d	1.739e-17	44.90	adrenoceptor alpha 1D [Source:Xenbase;Acc:XB-GENE-...	[more]
gsk3b	2.115e-7	47.37	glycogen synthase kinase 3 beta [Source:Xenbase;Ac...	[more]

BLAST of TCF15 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Tcf15	6.248e-18	47.83	transcription factor 15 [Source:MGI Symbol;Acc:MGI...	[more]
Scx	1.984e-16	44.66	scleraxis [Source:MGI Symbol;Acc:MGI:102934]	[more]
Tal2	1.007e-7	56.00	T cell acute lymphocytic leukemia 2 [Source:MGI Sy...	[more]
Twist2	2.179e-7	63.41	twist basic helix-loop-helix transcription factor ...	[more]
Twist2	2.179e-7	63.41	twist basic helix-loop-helix transcription factor ...	[more]

BLAST of TCF15 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|P79782\|TCF15_CHICK	6.755e-18	50.00	Transcription factor 15 OS=Gallus gallus OX=9031 G...	[more]
sp\|Q60756\|TCF15_MOUSE	4.370e-17	47.83	Transcription factor 15 OS=Mus musculus OX=10090 G...	[more]
sp\|Q60539\|TCF15_MESAU	4.556e-17	47.83	Transcription factor 15 OS=Mesocricetus auratus OX...	[more]
sp\|Q12870\|TCF15_HUMAN	1.528e-16	45.65	Transcription factor 15 OS=Homo sapiens OX=9606 GN...	[more]
sp\|P59101\|SCX_CHICK	1.590e-16	47.52	Basic helix-loop-helix transcription factor sclera...	[more]

BLAST of TCF15 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
H9CXU7	3.596e-65	100.00	TCF15 OS=Schmidtea mediterranea OX=79327 PE=2 SV=1	[more]
A0A3S5BHC2	3.447e-24	48.11	BHLH domain-containing protein OS=Protopolystoma x...	[more]
A0A4E0RTF3	6.685e-23	53.92	Protein boule OS=Fasciola hepatica OX=6192 GN=D915...	[more]
A0A2H1CBE8	8.384e-23	53.92	Helix-loop-helix DNA-binding domain protein OS=Fas...	[more]
A0A504YFW7	1.109e-22	53.92	Protein boule OS=Fasciola gigantica OX=46835 GN=FG...	[more]

BLAST of TCF15 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
scxa	3.011e-19	45.92	scleraxis bHLH transcription factor a [Source:ZFIN...	[more]
scxb	1.141e-18	47.00	basic helix-loop-helix transcription factor sclera...	[more]
si:ch211-246m6.4	3.411e-18	47.87	transcription factor 15-like [Source:NCBI gene;Acc...	[more]
si:ch211-246m6.4	6.481e-18	47.87	transcription factor 15-like [Source:NCBI gene;Acc...	[more]
tcf15	3.328e-17	46.74	transcription factor 15 [Source:NCBI gene;Acc:1030...	[more]

BLAST of TCF15 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5


Match Name	E-value	Identity	Description
scxa	2.631e-11	66.67	scleraxis bHLH transcription factor a [Source:ZFIN...	[more]
ENSPMAT00000011442.1	6.660e-8	58.54	pep scaffold:Pmarinus_7.0:GL478554:30221:30385:-1 ...	[more]
TWIST1	1.185e-7	58.54	twist family bHLH transcription factor 1 [Source:H...	[more]
TWIST1	2.238e-7	57.14	twist family bHLH transcription factor 1 [Source:H...	[more]
TWIST1	2.990e-7	58.54	twist family bHLH transcription factor 1 [Source:H...	[more]

BLAST of TCF15 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of TCF15 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5


Match Name	E-value	Identity	Description
EDO42924	3.989e-15	73.33	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
NVAS-C1	5.267e-10	58.54	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
NVAS-C2	2.938e-9	53.66	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO43849	1.479e-7	51.22	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO38292	2.211e-7	53.66	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of TCF15 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
tcf15	2.013e-20	47.83	transcription factor 15 [Source:NCBI gene;Acc:1011...	[more]
scxb	1.731e-17	47.96	scleraxis bHLH transcription factor [Source:NCBI g...	[more]
ENSORLT00000017495.2	8.897e-8	46.97	pep primary_assembly:ASM223467v1:4:24388791:243891...	[more]
ptf1a	7.397e-7	36.08	pancreas associated transcription factor 1a [Sourc...	[more]
ENSORLT00000005014.2	8.159e-7	60.98	twist family bHLH transcription factor 1 [Source:N...	[more]

BLAST of TCF15 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000044395.1	4.049e-68	100.00	SMESG000044395.1	[more]
SMESG000079648.1	2.866e-7	55.56	SMESG000079648.1	[more]
SMESG000000956.1	1.026e-6	48.98	SMESG000000956.1	[more]
SMESG000045286.1	9.191e-6	53.66	SMESG000045286.1	[more]
SMESG000044960.1	9.557e-6	48.78	SMESG000044960.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Cross References

External references for this transcript


Database	Accession
SmedGD GBrowse	SMED30006464
GenBank	AFD29618.1

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30006464 ID=SMED30006464|Name=TCF15|organism=Schmidtea mediterranea sexual|type=transcript|length=686bp
AATGAAATAATCAACAATACAAATCGGCAAGGTAATATAAGATTTTTATA
AAAAGATTTACAATAAGATGTTTATATACAAAAGGCAACGAAATGCCACG
CGATAATCAATAAAAAATCTCTTTAAATTACACAATTCCTATCAAAATAA
TATTAATAATAACAATAACAACTCAGCACTACTAACTCAATAATTTGAAA
TCACGCAAACAAAATGTGCAAACTGGTCGAGCACTCTTGAAATCTGTCGA
TAAATCAGAAACGGCGATTGGATTTGTTTTGAAATAACTTTGATCTAAAT
TCGGTTCGGTAATTCCTTTTAGACATGGCTGATCAATGGAACAAGATCCG
GTAATGAGAAGCGTATGAAGGTGATTGATATAGCTAGCAGCCAATCTCAA
TGTTTCAATTTTTGATAATTTTCTGTTGATCGGTTCCGTTGGAATTATTT
CTCTTAGAGCCAAAAACGCTTCATTGACACTAGCAGTTCTAGACCTTTCG
CGTTCTTTTGCCGATCGTTTACTAATTCCCATCTTTGAAAGTAAAAAATT
AAAATTAAAATTTGTAATCGATTTCCACGATGATTTTCTATTTAAAAGCA
CCCAAAACTTTTTCAACCAATTAAATCCTACGATAATTTTTATCTCATTT
TCTATTGGTTGATGTGAGAAAAATTTTACTGTTCAA

protein sequence of SMED30006464-orf-1

>SMED30006464-orf-1 ID=SMED30006464-orf-1|Name=SMED30006464-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=117bp
MGISKRSAKERERSRTASVNEAFLALREIIPTEPINRKLSKIETLRLAAS
YINHLHTLLITGSCSIDQPCLKGITEPNLDQSYFKTNPIAVSDLSTDFKS
ARPVCTFCLRDFKLLS*

Aliases

The feature 'TCF15' has the following synonyms


Synonym
TCF15

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000014	zeta neoblast
PLANA:0000016	pharynx
PLANA:0000026	gut
PLANA:0000028	Category 2 cell
PLANA:0000034	epidermis
PLANA:0000035	Category 3 cell
PLANA:0000101	muscle cell
PLANA:0000120	progenitor cell
PLANA:0000121	stem cell
PLANA:0000429	neoblast
PLANA:0002109	X1 cell
PLANA:0002142	parenchyma
PLANA:0003116	parenchymal cell

Vocabulary: **INTERPRO**
Term	Definition
IPR036638	HLH_DNA-bd_sf
IPR011598	bHLH_dom
IPR013809	ENTH

Vocabulary: **molecular function**
Term	Definition
GO:0046983	protein dimerization activity

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 9..61 e-value: 9.6E-16 score: 68.3
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 5..56 e-value: 2.6E-16 score: 59.3
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 3..55 score: 16.171
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	CDD	cd00083	HLH	coord: 5..59 e-value: 3.2402E-16 score: 65.3131
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	G3DSA:4.10.280.10		coord: 3..63 e-value: 5.0E-21 score: 76.0
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 5..63
None	No IPR available	PANTHER	PTHR23349:SF4	TRANSCRIPTION FACTOR 15	coord: 6..112
None	No IPR available	PANTHER	PTHR23349	BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST	coord: 6..112

Main menu

TCF15

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 24

Owlery

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