BZIP domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30006454 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 7
Homology
BLAST of BZIP domain-containing protein vs. TrEMBL
Match: A0A095AHR1 (BZIP domain-containing protein (Fragment) OS=Schistosoma haematobium OX=6185 GN=MS3_01691 PE=4 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 4.400e-8 Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = 1 Query: 778 PLDLSL--KIKSESKTID--ISNSLPKSHPRSNSETSNLDQRYWDRRRRNNEAVRKCRQNKRAKML 963 PLDLSL +IKSES + +S+S NS TS LD+RY DRRRRNNEAVR+CR+NKRA++L Sbjct: 375 PLDLSLCLQIKSESHNSEHFLSDS--------NSGTSTLDKRYQDRRRRNNEAVRRCRENKRARLL 432
BLAST of BZIP domain-containing protein vs. TrEMBL
Match: A0A183QJB5 (BZIP domain-containing protein OS=Schistosoma rodhaini OX=6188 PE=4 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.453e-8 Identity = 39/64 (60.94%), Postives = 46/64 (71.88%), Query Frame = 1 Query: 778 PLDLSL--KIKSESKTIDISNSLPKSHPRSNSETSNLDQRYWDRRRRNNEAVRKCRQNKRAKML 963 PLDLSL +IKSES + S SNS TS LD+RY DRRRRNNEAVR+CR+NKRA++L Sbjct: 824 PLDLSLCLQIKSESHNSEHFLS------DSNSGTSTLDKRYQDRRRRNNEAVRRCRENKRARLL 881
BLAST of BZIP domain-containing protein vs. TrEMBL
Match: A0A183LDT8 (Uncharacterized protein OS=Schistosoma margrebowiei OX=48269 GN=SMRZ_LOCUS1963 PE=4 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.441e-8 Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = 1 Query: 778 PLDLSL--KIKSESKTID--ISNSLPKSHPRSNSETSNLDQRYWDRRRRNNEAVRKCRQNKRAKML 963 PLDLSL +IKSES + +S+S NS TS LD+RY DRRRRNNEAVR+CR+NKRA++L Sbjct: 823 PLDLSLCLQIKSESHNSEHFLSDS--------NSGTSTLDKRYQDRRRRNNEAVRRCRENKRARLL 880
BLAST of BZIP domain-containing protein vs. TrEMBL
Match: A0A3Q0KTM9 (Putative transcriptional factor nfil3/e4bp4 OS=Schistosoma mansoni OX=6183 PE=4 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.008e-8 Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = 1 Query: 778 PLDLSL--KIKSESKTID--ISNSLPKSHPRSNSETSNLDQRYWDRRRRNNEAVRKCRQNKRAKML 963 PLDLSL +IKSES + +S+S NS TS LD+RY DRRRRNNEAVR+CR+NKRA++L Sbjct: 813 PLDLSLCLQIKSESHNSEHFLSDS--------NSGTSTLDKRYQDRRRRNNEAVRRCRENKRARLL 870
BLAST of BZIP domain-containing protein vs. TrEMBL
Match: G4VLQ0 (Putative transcriptional factor nfil3/e4bp4 OS=Schistosoma mansoni OX=6183 GN=Smp_176710 PE=4 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.060e-8 Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = 1 Query: 778 PLDLSL--KIKSESKTID--ISNSLPKSHPRSNSETSNLDQRYWDRRRRNNEAVRKCRQNKRAKML 963 PLDLSL +IKSES + +S+S NS TS LD+RY DRRRRNNEAVR+CR+NKRA++L Sbjct: 813 PLDLSLCLQIKSESHNSEHFLSDS--------NSGTSTLDKRYQDRRRRNNEAVRRCRENKRARLL 870
BLAST of BZIP domain-containing protein vs. Planmine SMEST
Match: SMESG000012495.1 (SMESG000012495.1) HSP 1 Score: 620.928 bits (1600), Expect = 0.000e+0 Identity = 349/350 (99.71%), Postives = 350/350 (100.00%), Query Frame = 1 Query: 247 GTDSKDVSMCFGESKLYQTQNSLECDYPNLNVSDVSEKDERYWXXXXXXXXXXXXXXXXXXQHDIAMEQQIQNLKLSNAILRKELFVLKQRLSQSVATIENSEVTSQLIPKHNFFQFDDISSLLSESALKLISPSYLGIANSAEPIXXXXXXXXXXXNFVEQFCQSENSDPSNFCINPLDLSLKIKSESKTIDISNSLPKSHPRSNSETSNLDQRYWDRRRRNNEAVRKCRQNKRAKMLCNSANNVNKNHIVTNGTVIXXXXXXXXXXVDKIQIKTKIESITNELEKLKSQLKNSENILDVRCQGNIKTEETFPNLSQRIRFNETNTGKKTMKWKNKLIEADQAERDIIE 1296 GTDSKDVSMCFGESKLYQTQNSLECDYPNLNVSDVSEKDERYWERRRKNNAAAKRSRERRRQHDIAMEQQIQNLKLSNAILRKELFVLKQRLSQSVATIENSEVTSQLIPKHNFFQFDDISSLLSE+ALKLISPSYLGIANSAEPISISGSLSHSSSNFVEQFCQSENSDPSNFCINPLDLSLKIKSESKTIDISNSLPKSHPRSNSETSNLDQRYWDRRRRNNEAVRKCRQNKRAKMLCNSANNVNKNHIVTNGTVINGHNNDNSNNVDKIQIKTKIESITNELEKLKSQLKNSENILDVRCQGNIKTEETFPNLSQRIRFNETNTGKKTMKWKNKLIEADQAERDIIE Sbjct: 25 GTDSKDVSMCFGESKLYQTQNSLECDYPNLNVSDVSEKDERYWERRRKNNAAAKRSRERRRQHDIAMEQQIQNLKLSNAILRKELFVLKQRLSQSVATIENSEVTSQLIPKHNFFQFDDISSLLSENALKLISPSYLGIANSAEPISISGSLSHSSSNFVEQFCQSENSDPSNFCINPLDLSLKIKSESKTIDISNSLPKSHPRSNSETSNLDQRYWDRRRRNNEAVRKCRQNKRAKMLCNSANNVNKNHIVTNGTVINGHNNDNSNNVDKIQIKTKIESITNELEKLKSQLKNSENILDVRCQGNIKTEETFPNLSQRIRFNETNTGKKTMKWKNKLIEADQAERDIIE 374
BLAST of BZIP domain-containing protein vs. Planmine SMEST
Match: SMESG000012495.1 (SMESG000012495.1) HSP 1 Score: 619.772 bits (1597), Expect = 0.000e+0 Identity = 349/350 (99.71%), Postives = 350/350 (100.00%), Query Frame = 1 Query: 247 GTDSKDVSMCFGESKLYQTQNSLECDYPNLNVSDVSEKDERYWXXXXXXXXXXXXXXXXXXQHDIAMEQQIQNLKLSNAILRKELFVLKQRLSQSVATIENSEVTSQLIPKHNFFQFDDISSLLSESALKLISPSYLGIANSAEPIXXXXXXXXXXXNFVEQFCQSENSDPSNFCINPLDLSLKIKSESKTIDISNSLPKSHPRSNSETSNLDQRYWDRRRRNNEAVRKCRQNKRAKMLCNSANNVNKNHIVTNGTVIXXXXXXXXXXVDKIQIKTKIESITNELEKLKSQLKNSENILDVRCQGNIKTEETFPNLSQRIRFNETNTGKKTMKWKNKLIEADQAERDIIE 1296 GTDSKDVSMCFGESKLYQTQNSLECDYPNLNVSDVSEKDERYWERRRKNNAAAKRSRERRRQHDIAMEQQIQNLKLSNAILRKELFVLKQRLSQSVATIENSEVTSQLIPKHNFFQFDDISSLLSE+ALKLISPSYLGIANSAEPISISGSLSHSSSNFVEQFCQSENSDPSNFCINPLDLSLKIKSESKTIDISNSLPKSHPRSNSETSNLDQRYWDRRRRNNEAVRKCRQNKRAKMLCNSANNVNKNHIVTNGTVINGHNNDNSNNVDKIQIKTKIESITNELEKLKSQLKNSENILDVRCQGNIKTEETFPNLSQRIRFNETNTGKKTMKWKNKLIEADQAERDIIE Sbjct: 19 GTDSKDVSMCFGESKLYQTQNSLECDYPNLNVSDVSEKDERYWERRRKNNAAAKRSRERRRQHDIAMEQQIQNLKLSNAILRKELFVLKQRLSQSVATIENSEVTSQLIPKHNFFQFDDISSLLSENALKLISPSYLGIANSAEPISISGSLSHSSSNFVEQFCQSENSDPSNFCINPLDLSLKIKSESKTIDISNSLPKSHPRSNSETSNLDQRYWDRRRRNNEAVRKCRQNKRAKMLCNSANNVNKNHIVTNGTVINGHNNDNSNNVDKIQIKTKIESITNELEKLKSQLKNSENILDVRCQGNIKTEETFPNLSQRIRFNETNTGKKTMKWKNKLIEADQAERDIIE 368 The following BLAST results are available for this feature:
BLAST of BZIP domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of BZIP domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of BZIP domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of BZIP domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of BZIP domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of BZIP domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of BZIP domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of BZIP domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of BZIP domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of BZIP domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of BZIP domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of BZIP domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of BZIP domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of BZIP domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 2
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30006454 ID=SMED30006454|Name=BZIP domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1630bpback to top protein sequence of SMED30006454-orf-1 >SMED30006454-orf-1 ID=SMED30006454-orf-1|Name=SMED30006454-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=394bp MSQHACKHQVRVTIISSICVNIAVIMNSNNSFSSSSATSSISSGTDSKDVback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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