HTH CENPB-type domain-containing protein

Overview
NameHTH CENPB-type domain-containing protein
Smed IDSMED30006437
Length (bp)883
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of HTH CENPB-type domain-containing protein (SMED30006437) t-SNE clustered cells

Violin plots show distribution of expression levels for HTH CENPB-type domain-containing protein (SMED30006437) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of HTH CENPB-type domain-containing protein (SMED30006437) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for HTH CENPB-type domain-containing protein (SMED30006437) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30006437

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 5

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
pharynxSMED30006437h1SMcG0018298 dd_Smed_v4_12660_2_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30006437h1SMcG0018298 dd_Smed_v4_12660_2_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30006437h1SMcG0018298 dd_Smed_v4_12660_2_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30006437h1SMcG0018298 dd_Smed_v4_12660_2_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30006437h1SMcG0018298 dd_Smed_v4_12660_2_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Human
Match: TIGD1 (tigger transposable element derived 1 [Source:HGNC Symbol;Acc:HGNC:14523])

HSP 1 Score: 178.333 bits (451), Expect = 5.568e-51
Identity = 99/221 (44.80%), Postives = 144/221 (65.16%), Query Frame = 2 
Query:  224 MAGTSKTNKSKRSVIDLETKHKIILQFESSKKVKDIAYDLKLSHSTISTILKDKKRILEAVKESTSMNSTIITKKRQGPIHDMEKLLVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSKEG-ESYDQTFTASHGWFQRFKKRANYQNLKISGEAASADHIAAEEFVVKFNEFLEENNYTKEQIFNVDETGLYWKRMSERTYIHKEEKSMPGFKAFKDRIT 883
            MA    + +  R+ + L  K ++I   E      +I   L L   T+S ++  K++ L+ VK +T MN+ +I +KR   I DMEK+LV+W+ED   + IPLS ++IQ KA +LFN +K++ G E+ ++ F AS GWF RFK+R+++ N+K  GEAASAD  AA  +     + ++E  YTK+QIFNVDET  YWK+M  RT+I +EEKS+PGFKA KDR+T
Sbjct:    1 MASKCSSERKSRTSLTLNQKLEMIKLSEEGMSKAEIGRRLGLLRQTVSQVVNAKEKFLKEVKSATPMNTRMI-RKRNSLIADMEKVLVVWIEDQTSRNIPLSQSLIQNKALTLFNSMKAERGVEAAEEKFEASRGWFMRFKERSHFHNIKAQGEAASADVEAAASYPEALAKIIDEGGYTKQQIFNVDETAFYWKKMPSRTFIAREEKSVPGFKASKDRLT 220
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Human
Match: JRKL (JRK like [Source:HGNC Symbol;Acc:HGNC:6200])

HSP 1 Score: 106.686 bits (265), Expect = 2.634e-25
Identity = 65/216 (30.09%), Postives = 107/216 (49.54%), Query Frame = 2 
Query:  242 TNKSKRSVIDLETKHKIILQFESSKKVKDIAYDLKLSHSTISTILKDKKRILEAVKESTSMNSTIITKKRQGP--IHDMEKLLVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSKEGESYDQTFTASHGWFQRFKKRANYQNLKISGEAASADHIAAEEFVVKFNEFLEENNYTKEQIFNVDETGLYWKRMSERTYIHKEEKSMPGFKAFKDRIT 883
            + K KR V+ ++ K  II + E     K +A    +  +T+  I K+K++I+     S S  S +  +K   P    ++++ ++ W      K  P+S  I   +A   F  L        D  F  S GW  RFK+R + + + I  E  + D  A E+F   F +F+E  N   EQI+N DETGL+WK +  R  + K + ++PG K+ ++R+T
Sbjct:    2 SGKRKRVVLTIKDKLDIIKKLEDGGSSKQLAVIYGIGETTVRDIRKNKEKIITYASSSDS-TSLLAKRKSMKPSMYEELDRAMLEWFNQQRAKGNPISGPICAKRAEFFFYAL------GMDGDFNPSAGWLTRFKQRHSIREINIRNERLNGDETAVEDFCNNFRDFIERENLQPEQIYNADETGLFWKCLPSRISVIKGKCTVPGHKSIEERVT 210
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Human
Match: TIGD2 (tigger transposable element derived 2 [Source:HGNC Symbol;Acc:HGNC:18333])

HSP 1 Score: 98.5969 bits (244), Expect = 1.490e-22
Identity = 63/213 (29.58%), Postives = 102/213 (47.89%), Query Frame = 2 
Query:  245 NKSKRSVIDLETKHKIILQFESSKKVKDIAYDLKLSHSTISTILKDKKRILEAVKESTSMNSTIITKKRQGPIHD-MEKLLVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSKEGESYDQTFTASHGWFQRFKKRANYQNLKISGEAASADHIAAEEFVVKFNEFLEENNYTKEQIFNVDETGLYWKRMSERTYIHKEEKSMPGFKAFKDRI 880
             K KR V+ ++ K  II + E     K ++    +  ST+  I K+K+RI+     S   +     K  +   ++ ++++++ W        IP+S  I   +A   F+ L   EG+     F AS GW  RFK+R         G     D  AA EF   F EF+E+ N   EQI+  D+TGL+WK +  RT   + ++S  G ++ ++RI
Sbjct:    3 GKRKRVVLTIKDKLDIIKKLEEGISFKKLSVVYGIGESTVRDIKKNKERIINYANSSDPTSGVSKRKSMKSSTYEELDRVMIEWFNQQKTDGIPVSGTICAKQAKFFFDAL-GMEGD-----FNASSGWLTRFKQRHGIPKAAGKGTKLKGDETAAREFCGSFQEFVEKENLQPEQIYGADQTGLFWKCLPSRTLTLETDQSTSGCRSSRERI 209
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Human
Match: TIGD2 (tigger transposable element derived 2 [Source:HGNC Symbol;Acc:HGNC:18333])

HSP 1 Score: 98.5969 bits (244), Expect = 1.490e-22
Identity = 63/213 (29.58%), Postives = 102/213 (47.89%), Query Frame = 2 
Query:  245 NKSKRSVIDLETKHKIILQFESSKKVKDIAYDLKLSHSTISTILKDKKRILEAVKESTSMNSTIITKKRQGPIHD-MEKLLVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSKEGESYDQTFTASHGWFQRFKKRANYQNLKISGEAASADHIAAEEFVVKFNEFLEENNYTKEQIFNVDETGLYWKRMSERTYIHKEEKSMPGFKAFKDRI 880
             K KR V+ ++ K  II + E     K ++    +  ST+  I K+K+RI+     S   +     K  +   ++ ++++++ W        IP+S  I   +A   F+ L   EG+     F AS GW  RFK+R         G     D  AA EF   F EF+E+ N   EQI+  D+TGL+WK +  RT   + ++S  G ++ ++RI
Sbjct:    3 GKRKRVVLTIKDKLDIIKKLEEGISFKKLSVVYGIGESTVRDIKKNKERIINYANSSDPTSGVSKRKSMKSSTYEELDRVMIEWFNQQKTDGIPVSGTICAKQAKFFFDAL-GMEGD-----FNASSGWLTRFKQRHGIPKAAGKGTKLKGDETAAREFCGSFQEFVEKENLQPEQIYGADQTGLFWKCLPSRTLTLETDQSTSGCRSSRERI 209
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Human
Match: JRK (Jrk helix-turn-helix protein [Source:HGNC Symbol;Acc:HGNC:6199])

HSP 1 Score: 96.6709 bits (239), Expect = 8.079e-22
Identity = 65/220 (29.55%), Postives = 104/220 (47.27%), Query Frame = 2 
Query:  227 AGTSKTNKSKRSVIDLETKHKIILQFESSKKVKDIAYDLKLSHSTISTILKDKKRILEAVKESTSMNSTIITKKRQGP-IHDMEKLLVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSKEGESYDQTFTASHGWFQRFKKRANYQNLKISGEAASADHIAAEEFVVKFNEFLEENNYTKEQIFNVDETGLYWKRMSERTYIHKEEKSMPGFKAFKDRIT 883
            AG S+  K KR V+ L+ K  I  + E  +  K +  +  +  ST+  I   K ++L     S S  +    +    P +  ++++L  W      + +P+S  ++  KA   +  ++  E   +      S GW  RFK R   + L  S E  SADH AAE+F   F     E+  + EQ++N DETGL+W+ +   T    E  ++PG K  KDR+T
Sbjct:    7 AGKSRGEKRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAHKAQLLRFFASSDSNKALEQRRTLHTPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKAKDFYEQMQLTEPCVF------SGGWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFFRSLAAEHGLSAEQVYNADETGLFWRCLPNPT---PEGGAVPGPKQGKDRLT 217
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Xenopus
Match: kif6 (kinesin family member 6 [Source:Xenbase;Acc:XB-GENE-1014042])

HSP 1 Score: 78.1814 bits (191), Expect = 1.501e-15
Identity = 54/220 (24.55%), Postives = 102/220 (46.36%), Query Frame = 2 
Query:  227 AGTSKTNKSKRSVIDLETKHKIILQFESSKKVKDIAYDLKLSHSTISTILKDKKRILEAVKESTSMNSTIITKK-RQGPIHDMEKLLVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSKEGESYDQTFTASHGWFQRFKKRANYQNLKISGEAASADHIAAEEFVVKFNEFLEENNYTKEQIFNVDETGLYWKRMSERTYIHKEEKSMPGFKAFKDRIT 883
             G     K KR  + ++ K  ++   E+   VK +     +  STI  + K K ++L     S + +     K   Q     ++K+L+ W+    ++  PLS ++I  +A     +L       Y      S GW+ +FKKR     L I+GE AS ++  A+ FV K N+ + + + + EQ++N  +  L+W+ + ++     ++    G +  K+R+T
Sbjct:  174 PGIPPDTKRKRVSLSIKDKVTLLQDLENGASVKSLCDKYGIGTSTIYDLKKQKDKLLTFYSNSDAPDLMADRKTLHQAKNVSVDKVLMEWIRQRRRENFPLSRSLIMAQAKKFHVLLNISTPCEY------SSGWYGKFKKRNGLSILSINGEKASEEYNVADNFVKKLNKLVSDEHLSAEQVYNAAKASLFWRHLPQKLVATAQKPPSSGLEDPKERLT 387
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Xenopus
Match: ENSXETT00000046714.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:KV460367.1:582927:585046:-1 gene:ENSXETG00000018570.1 transcript:ENSXETT00000046714.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 71.633 bits (174), Expect = 1.806e-13
Identity = 66/216 (30.56%), Postives = 99/216 (45.83%), Query Frame = 2 
Query:  254 KRSVIDLETKHKIILQFESSKKVK-DIAYDLKLSHSTISTILKDKKRILEAVKESTSMNSTIITKKR----QGPIHDMEKLLVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSKEGESYDQTFTASHGWFQRFKKRANYQNLKISGEAASADHIAAEEF-VVKFNEFLEENNYTKEQIFNVDETGLYWKRMSERTYIHKEEKSMPGFKAFKDRIT 883
            KR  + LE K  I+ + +S    +  +A +L +  ST+ TI+K +     A  E ++       KKR    Q     MEKLL  W   L    +P+S  +++ KA  +   L           FTAS+GW  RFKKR N     + GE+ S D      +   +   +LE   Y  + IFN DETGL++  +  +T+  + E    G K  K R+T
Sbjct:    7 KRKSLSLEEKIAILDRADSYHGTRVALAKELGIPVSTLGTIIKQR-----ASTEGSADKCGPQAKKRKYVTQSKYEQMEKLLQEWFAGLHASNVPISGIMLREKAVHIATRLGI-------DNFTASNGWIDRFKKRYNVVYKAVCGESKSVDIDTVTNWKTNQLPCYLE--GYELKNIFNTDETGLFFNVLPGKTFCFRGEDCHGG-KLSKLRLT 207
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Xenopus
Match: apmapl (adipocyte plasma membrane associated protein LIKE [Source:Xenbase;Acc:XB-GENE-5754317])

HSP 1 Score: 54.299 bits (129), Expect = 9.167e-8
Identity = 39/147 (26.53%), Postives = 72/147 (48.98%), Query Frame = 2 
Query:  251 SKRSVIDLETKHKI--ILQFESSKKVKDIAYDLKLSHSTISTILKDKKRILEAVKESTSMNSTIITKKRQGPIHDMEKLLVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSKEGESYDQTFTASHGWFQRFKKRANYQNLKISGEA 685
            SK+ ++    K K+  I + ++ ++   ++ D  +   T+   LKD++++   + +      T   K R     ++++ +  W   L Q+ IPLS  IIQ +A +    +   E      TF ASHGWF R++KR    + +I GE+
Sbjct:    5 SKKQILTYSIKDKLEAIERVKNGERQASVSRDFGVPGGTLRGWLKDEQKLRWFLDQLGGDVGTHRKKMRLANEEEIDRAVYSWFISLRQQGIPLSGPIIQAQAEAFAKQIYGDEC-----TFKASHGWFWRWQKRHGISSQRIYGES 146
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Mouse
Match: Jrkl (Jrk-like [Source:MGI Symbol;Acc:MGI:1924782])

HSP 1 Score: 107.842 bits (268), Expect = 7.669e-26
Identity = 67/216 (31.02%), Postives = 107/216 (49.54%), Query Frame = 2 
Query:  242 TNKSKRSVIDLETKHKIILQFESSKKVKDIAYDLKLSHSTISTILKDKKRILEAVKESTSMNSTIITKKRQGP--IHDMEKLLVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSKEGESYDQTFTASHGWFQRFKKRANYQNLKISGEAASADHIAAEEFVVKFNEFLEENNYTKEQIFNVDETGLYWKRMSERTYIHKEEKSMPGFKAFKDRIT 883
            + K KR V+ ++ K  II + E     K +A    +  +T+  I K+K++I+     S S  S +  +K   P    +++K ++ W      K  P+S  I   +A   F  L        D  F  S GW  RFK+R + + + I  E  + D  A E+F   F +F+E+ N   EQI+N DETGL+WK +  RT + K + ++PG    ++RIT
Sbjct:    2 SGKRKRVVLTIKDKLDIIKKLEDGGSSKQLAVIYGIGETTVRDIRKNKEKIITYASSSDS-TSLLAKRKSMKPSMYEELDKAMLEWFNQQRAKGNPISGPICAKRAEFFFYAL------GMDGDFNPSAGWLTRFKQRHSIREINIRNERLNGDETAVEDFCNNFRDFIEQENLQPEQIYNADETGLFWKCLPSRTTVIKGKCTVPGHNLGEERIT 210
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Mouse
Match: Tigd2 (tigger transposable element derived 2 [Source:MGI Symbol;Acc:MGI:1915390])

HSP 1 Score: 96.2857 bits (238), Expect = 6.159e-22
Identity = 62/213 (29.11%), Postives = 99/213 (46.48%), Query Frame = 2 
Query:  245 NKSKRSVIDLETKHKIILQFESSKKVKDIAYDLKLSHSTISTILKDKKRILEAVKESTSMNSTIITKKRQGPIHD-MEKLLVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSKEGESYDQTFTASHGWFQRFKKRANYQNLKISGEAASADHIAAEEFVVKFNEFLEENNYTKEQIFNVDETGLYWKRMSERTYIHKEEKSMPGFKAFKDRI 880
             K KR V+ ++ K  II + E     K ++    +  ST+  I K+K+RI+     S   +     K  +   ++ ++++++ W        IP+S  I   +A   F+ L   EG+     F AS GW  RFK+R         G     D  AA EF   F EF+E  N   EQI+  D+TGL+WK +  RT     ++S   ++  ++RI
Sbjct:    3 GKRKRVVLTIKDKLDIIKKLEEGNSFKKLSVLYGIGESTVRDIKKNKERIINYANSSDPTSGVSKRKSMKSSTYEELDRVMIEWFNQQKTDGIPVSGTICAKQARFFFDAL-GMEGD-----FNASSGWLTRFKQRHGIPKAAGKGTKLKGDETAASEFCGNFQEFVERENLLPEQIYGADQTGLFWKCLPTRTLAFDTDQSTCEYRTSRERI 209
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Mouse
Match: Jrk (jerky [Source:MGI Symbol;Acc:MGI:106214])

HSP 1 Score: 85.8853 bits (211), Expect = 2.670e-18
Identity = 61/222 (27.48%), Postives = 102/222 (45.95%), Query Frame = 2 
Query:  221 KMAGTSKTNKSKRSVIDLETKHKIILQFESSKKVKDIAYDLKLSHSTISTILKDKKRILEAVKESTSMNSTIITKKRQGP-IHDMEKLLVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSKEGESYDQTFTASHGWFQRFKKRANYQNLKISGEAASADHIAAEEFVVKFNEFLEENNYTKEQIFNVDETGLYWKRMSERTYIHKEEKSMPGFKAFKDRIT 883
            + A   K  K KR V+ L+ K  I  + E  +  K +  +  +  ST+  I   K ++L     S S  +    +    P +  ++++L  W      + IP+S  ++  KA   +  ++  E   +      S GW  RFK R   + L  S E  +ADH AAE+F   F     E+  + EQ+++ DETGL W+ +        ++ ++P FK  KDR+T
Sbjct:    5 QAAAKGKGEKRKRVVLTLKEKIDICTRLERGESRKALMQEYNVGMSTLYDIKAHKAQLLRFFASSDSRQALEQRRTLHTPKLEHLDRVLYEWFLVKRAEGIPVSGPMLIEKAKDFYKQMRLTEPCVF------SGGWLWRFKARHGIKKLDASSEKQAADHQAAEQFCGFFRSLAAEHGLSPEQVYSADETGLVWRCLPNSA---PDDGTVPHFKQGKDRLT 217
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Mouse
Match: Tigd4 (tigger transposable element derived 4 [Source:MGI Symbol;Acc:MGI:2685264])

HSP 1 Score: 75.485 bits (184), Expect = 7.629e-15
Identity = 65/220 (29.55%), Postives = 103/220 (46.82%), Query Frame = 2 
Query:  230 GTSKTNKSKRSVIDLETKHKIILQFESSKKVKDIAYDLKLSHSTISTILKDKKRILEAVKESTSMNSTIITKKRQGPIHDMEKLLVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSKEGESYDQTFTASHGWFQRFKKRANYQNLKISGEAASADHIAAEEFVVKFNEFLEE--NNYTKEQIFNVDETGLYWKRMSERTYIHKEEKSMPGFKAFKDRIT 883
            GT      K+  + +E K  II   ES KK  +IA +  +  +++S+I+K+K ++LEA  ES   +     + R     D+E+ L+ W        +P++  +++ KA    N    K G +    F  S+GW  RFK R     L    +   A  I+ +   V +   L    N+Y  + +FNV ETGL ++ +   T+  K E    G K  KDRIT
Sbjct:    9 GTQPVTVKKKKSLSIEEKIDIINAVESGKKKAEIAAEYGIKKNSLSSIMKNKDKVLEAF-ESLRFDPKR-KRLRTAFYTDLEEALMRWYRIAQCLNVPVNGPMLRLKA----NDFAQKLGHN---DFKCSNGWLDRFKSR---YGLVFRAQPVEATGISIDPSTVWYQNVLPYYLNDYHPKNVFNVKETGLLYRMLPTNTFAFKGETCSVG-KLCKDRIT 215
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Mouse
Match: Tigd5 (tigger transposable element derived 5 [Source:MGI Symbol;Acc:MGI:2145902])

HSP 1 Score: 72.4034 bits (176), Expect = 9.827e-14
Identity = 53/203 (26.11%), Postives = 87/203 (42.86%), Query Frame = 2 
Query:  257 RSVIDLETKHKIILQFESSKKVKDIAYDLKLSHSTISTILKDKKRILEAVKESTSMNSTIITKKRQGPIHDMEKLLVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSKEGESYDQTFTASHGWFQRFKKRANYQNLKISGEAASADHIAA---EEFVVKFNEFL-----------EENNYTKEQIFNVDETGLYWKRMSERT 823
            R    ++ K + I + +  ++   +  D  +   T+   LKD+ ++   + +      T   K R     ++++ +  W   L Q  +PLS  +IQ +A +    +   E      TF ASHGWF R++KR    + +I GEA S     A   EE        L            E  Y  EQI+N + TGLYW+ + E+ 
Sbjct:   63 RKAYSIKDKLQAIERVKGGERQASVCRDFGVPGGTLRGWLKDEPKLRWFLDQLGGEVGTQRKKMRLANEEEIDRAVYSWFLTLRQHGVPLSGPVIQAQAEAFARQIYGPE-----CTFKASHGWFWRWQKRHGISSQRIYGEAESPVAGPAPVKEEPAQSPGAVLVPDGAPATLPHSEGGYGDEQIYNANVTGLYWRLLPEQA 260
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q96MW7|TIGD1_HUMAN (Tigger transposable element-derived protein 1 OS=Homo sapiens OX=9606 GN=TIGD1 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.674e-50
Identity = 99/221 (44.80%), Postives = 144/221 (65.16%), Query Frame = 2 
Query:  224 MAGTSKTNKSKRSVIDLETKHKIILQFESSKKVKDIAYDLKLSHSTISTILKDKKRILEAVKESTSMNSTIITKKRQGPIHDMEKLLVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSKEG-ESYDQTFTASHGWFQRFKKRANYQNLKISGEAASADHIAAEEFVVKFNEFLEENNYTKEQIFNVDETGLYWKRMSERTYIHKEEKSMPGFKAFKDRIT 883
            MA    + +  R+ + L  K ++I   E      +I   L L   T+S ++  K++ L+ VK +T MN+ +I +KR   I DMEK+LV+W+ED   + IPLS ++IQ KA +LFN +K++ G E+ ++ F AS GWF RFK+R+++ N+K  GEAASAD  AA  +     + ++E  YTK+QIFNVDET  YWK+M  RT+I +EEKS+PGFKA KDR+T
Sbjct:    1 MASKCSSERKSRTSLTLNQKLEMIKLSEEGMSKAEIGRRLGLLRQTVSQVVNAKEKFLKEVKSATPMNTRMI-RKRNSLIADMEKVLVVWIEDQTSRNIPLSQSLIQNKALTLFNSMKAERGVEAAEEKFEASRGWFMRFKERSHFHNIKAQGEAASADVEAAASYPEALAKIIDEGGYTKQQIFNVDETAFYWKKMPSRTFIAREEKSVPGFKASKDRLT 220
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. UniProt/SwissProt
Match: sp|B2RRL2|JERKL_MOUSE (Jerky protein homolog-like OS=Mus musculus OX=10090 GN=Jrkl PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.364e-25
Identity = 67/216 (31.02%), Postives = 107/216 (49.54%), Query Frame = 2 
Query:  242 TNKSKRSVIDLETKHKIILQFESSKKVKDIAYDLKLSHSTISTILKDKKRILEAVKESTSMNSTIITKKRQGP--IHDMEKLLVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSKEGESYDQTFTASHGWFQRFKKRANYQNLKISGEAASADHIAAEEFVVKFNEFLEENNYTKEQIFNVDETGLYWKRMSERTYIHKEEKSMPGFKAFKDRIT 883
            + K KR V+ ++ K  II + E     K +A    +  +T+  I K+K++I+     S S  S +  +K   P    +++K ++ W      K  P+S  I   +A   F  L        D  F  S GW  RFK+R + + + I  E  + D  A E+F   F +F+E+ N   EQI+N DETGL+WK +  RT + K + ++PG    ++RIT
Sbjct:    2 SGKRKRVVLTIKDKLDIIKKLEDGGSSKQLAVIYGIGETTVRDIRKNKEKIITYASSSDS-TSLLAKRKSMKPSMYEELDKAMLEWFNQQRAKGNPISGPICAKRAEFFFYAL------GMDGDFNPSAGWLTRFKQRHSIREINIRNERLNGDETAVEDFCNNFRDFIEQENLQPEQIYNADETGLFWKCLPSRTTVIKGKCTVPGHNLGEERIT 210
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9Y4A0|JERKL_HUMAN (Jerky protein homolog-like OS=Homo sapiens OX=9606 GN=JRKL PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.265e-24
Identity = 65/216 (30.09%), Postives = 107/216 (49.54%), Query Frame = 2 
Query:  242 TNKSKRSVIDLETKHKIILQFESSKKVKDIAYDLKLSHSTISTILKDKKRILEAVKESTSMNSTIITKKRQGP--IHDMEKLLVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSKEGESYDQTFTASHGWFQRFKKRANYQNLKISGEAASADHIAAEEFVVKFNEFLEENNYTKEQIFNVDETGLYWKRMSERTYIHKEEKSMPGFKAFKDRIT 883
            + K KR V+ ++ K  II + E     K +A    +  +T+  I K+K++I+     S S  S +  +K   P    ++++ ++ W      K  P+S  I   +A   F  L        D  F  S GW  RFK+R + + + I  E  + D  A E+F   F +F+E  N   EQI+N DETGL+WK +  R  + K + ++PG K+ ++R+T
Sbjct:    2 SGKRKRVVLTIKDKLDIIKKLEDGGSSKQLAVIYGIGETTVRDIRKNKEKIITYASSSDS-TSLLAKRKSMKPSMYEELDRAMLEWFNQQRAKGNPISGPICAKRAEFFFYAL------GMDGDFNPSAGWLTRFKQRHSIREINIRNERLNGDETAVEDFCNNFRDFIERENLQPEQIYNADETGLFWKCLPSRISVIKGKCTVPGHKSIEERVT 210
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q4W5G0|TIGD2_HUMAN (Tigger transposable element-derived protein 2 OS=Homo sapiens OX=9606 GN=TIGD2 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 7.155e-22
Identity = 63/213 (29.58%), Postives = 102/213 (47.89%), Query Frame = 2 
Query:  245 NKSKRSVIDLETKHKIILQFESSKKVKDIAYDLKLSHSTISTILKDKKRILEAVKESTSMNSTIITKKRQGPIHD-MEKLLVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSKEGESYDQTFTASHGWFQRFKKRANYQNLKISGEAASADHIAAEEFVVKFNEFLEENNYTKEQIFNVDETGLYWKRMSERTYIHKEEKSMPGFKAFKDRI 880
             K KR V+ ++ K  II + E     K ++    +  ST+  I K+K+RI+     S   +     K  +   ++ ++++++ W        IP+S  I   +A   F+ L   EG+     F AS GW  RFK+R         G     D  AA EF   F EF+E+ N   EQI+  D+TGL+WK +  RT   + ++S  G ++ ++RI
Sbjct:    3 GKRKRVVLTIKDKLDIIKKLEEGISFKKLSVVYGIGESTVRDIKKNKERIINYANSSDPTSGVSKRKSMKSSTYEELDRVMIEWFNQQKTDGIPVSGTICAKQAKFFFDAL-GMEGD-----FNASSGWLTRFKQRHGIPKAAGKGTKLKGDETAAREFCGSFQEFVEKENLQPEQIYGADQTGLFWKCLPSRTLTLETDQSTSGCRSSRERI 209
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. UniProt/SwissProt
Match: sp|O75564|JERKY_HUMAN (Jerky protein homolog OS=Homo sapiens OX=9606 GN=JRK PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 3.880e-21
Identity = 65/220 (29.55%), Postives = 104/220 (47.27%), Query Frame = 2 
Query:  227 AGTSKTNKSKRSVIDLETKHKIILQFESSKKVKDIAYDLKLSHSTISTILKDKKRILEAVKESTSMNSTIITKKRQGP-IHDMEKLLVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSKEGESYDQTFTASHGWFQRFKKRANYQNLKISGEAASADHIAAEEFVVKFNEFLEENNYTKEQIFNVDETGLYWKRMSERTYIHKEEKSMPGFKAFKDRIT 883
            AG S+  K KR V+ L+ K  I  + E  +  K +  +  +  ST+  I   K ++L     S S  +    +    P +  ++++L  W      + +P+S  ++  KA   +  ++  E   +      S GW  RFK R   + L  S E  SADH AAE+F   F     E+  + EQ++N DETGL+W+ +   T    E  ++PG K  KDR+T
Sbjct:    7 AGKSRGEKRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAHKAQLLRFFASSDSNKALEQRRTLHTPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKAKDFYEQMQLTEPCVF------SGGWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFFRSLAAEHGLSAEQVYNADETGLFWRCLPNPT---PEGGAVPGPKQGKDRLT 217
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. TrEMBL
Match: A0A1U8D5D7 (tigger transposable element-derived protein 1-like OS=Alligator sinensis OX=38654 GN=LOC102378509 PE=4 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 8.167e-83
Identity = 132/216 (61.11%), Postives = 161/216 (74.54%), Query Frame = 2 
Query:  224 MAGTSKTNKSKRSVIDLETKHKIILQFESSKKVKDIAYDLKLSHSTISTILKDKKRILEAVKESTSMNSTIITKKRQGPIHDMEKLLVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSKEGESYDQTFTASHGWFQRFKKRANYQNLKISGEAASADHIAAEEFVVKFNEFLEENNYTKEQIFNVDETGLYWKRMSERTYIHKEEKSMPGFKAFK 871
            M     + K +R  IDL  K KII  +E+ KKVK IA DL+L+HSTISTILKDK+R+ EAVK ST   + IIT++R+G IH+MEKLL IW +D IQKR+P+SL IIQ KA S+F  LK +EGE   +TFTASHGWFQRF++R N  N  ISGEAASAD  AAE+FV +F+E +E      EQIFNVDE  L+WK+M ER+YIHKE K+MPGFKAFK
Sbjct:    8 MTSPGGSAKKQRKAIDLVMKMKIINDYEAGKKVKAIARDLELAHSTISTILKDKERVKEAVKASTGFKA-IITRQRKGLIHEMEKLLAIWFDDQIQKRMPMSLLIIQAKARSIFETLKVREGEGSTETFTASHGWFQRFRRRFNVHNRSISGEAASADVEAAEKFVDQFDEIIERGGCRPEQIFNVDEIRLFWKKMPERSYIHKEAKTMPGFKAFK 222
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. TrEMBL
Match: K7GEK8 (HTH CENPB-type domain-containing protein OS=Pelodiscus sinensis OX=13735 PE=4 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 1.343e-72
Identity = 125/212 (58.96%), Postives = 150/212 (70.75%), Query Frame = 2 
Query:  248 KSKRSVIDLETKHKIILQFESSKKVKDIAYDLKLSHSTISTILKDKKRILEAVKESTSMNSTIITKKRQGPIHDMEKLLVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSKEGESYDQTFTASHGWFQRFKKRANYQNLKISGEAASADHIAAEEFVVKFNEFLEENNYTKEQIFNVDETGLYWKRMSERTYIHKEEKSMPGFKAFKDRIT 883
            K KR  IDLE K  I  Q+E  + V  ++  L LS ST+STI+KD  RI EAVK S  M S I+TK+R GPI +MEKLLV+WMED I+KR PLSL  IQ KA SLF  L  KEG  YDQTFTASH WF RFK R N  N+K+SGEAASAD  AAE F+ + ++ +      +EQIFNVDETGL+WK+M E TYIH+E K+M G+KAFK R+T
Sbjct:    9 KRKRKTIDLEQKIAIARQYEGGQTVSFMSRKLGLSKSTVSTIIKDSDRIREAVKRSAPMKSKILTKQRAGPILEMEKLLVLWMEDQIEKRTPLSLMTIQAKAHSLFEDLNKKEGYDYDQTFTASHSWFNRFKMRPNLHNVKLSGEAASADSKAAETFIEELDKLI------REQIFNVDETGLFWKKMPEHTYIHREAKTMLGYKAFKYRLT 214
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. TrEMBL
Match: K7FZA2 (HTH CENPB-type domain-containing protein OS=Pelodiscus sinensis OX=13735 PE=4 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 1.362e-72
Identity = 121/212 (57.08%), Postives = 152/212 (71.70%), Query Frame = 2 
Query:  248 KSKRSVIDLETKHKIILQFESSKKVKDIAYDLKLSHSTISTILKDKKRILEAVKESTSMNSTIITKKRQGPIHDMEKLLVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSKEGESYDQTFTASHGWFQRFKKRANYQNLKISGEAASADHIAAEEFVVKFNEFLEENNYTKEQIFNVDETGLYWKRMSERTYIHKEEKSMPGFKAFKDRIT 883
            K KR  IDLE K  I+ Q++  +    +  +L L  STISTI+K+  RI EAVK    M STIITKKR GPIHD+EKLLV+WMED I+  + LSL +IQ KA SLF  LK KEG  YDQTF+ASHGW   FK RAN+ N+K+SGEAASAD  AAE F+ + ++ ++E N   EQIFNVDE  L+WK+M + TYIH+E K++PGFKAF+D +T
Sbjct:    3 KRKRKAIDLEQKIAIVRQYKGGQTALFMVLNLGLLKSTISTIIKNSDRIREAVKGFAPMKSTIITKKRTGPIHDVEKLLVLWMEDQIKNLMLLSLKMIQAKARSLFEDLKKKEGYDYDQTFSASHGW---FKNRANFHNVKVSGEAASADWKAAETFIEELDKLIKEENDLPEQIFNVDERALFWKKMPDHTYIHEEAKTVPGFKAFEDHLT 211
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. TrEMBL
Match: A0A5F9D9H0 (Uncharacterized protein OS=Oryctolagus cuniculus OX=9986 GN=CMC2 PE=4 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.382e-72
Identity = 129/218 (59.17%), Postives = 153/218 (70.18%), Query Frame = 2 
Query:  233 TSKTNKSKRSVIDLETKHKIILQFESSKKVKDIAYDLKLSHSTISTILKDKKRILEAVKESTSMNSTIITKKRQGPIHDMEKLLVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSK-EGESYDQTFTASHGWFQRFKKRANYQNLKISGEAASADHIAAEEFVVKFNEFLEENNYTKEQIFNVDETGLYWKRMSERTYIHKEEKSMPGFKAFKDRIT 883
            ++   K KR  I LE K KII Q E  K V  IA +  LS ST+STILKDKKRI +AVK S S+ ST+ITKKR GPI DMEKLLV WME+  QKRIPLSL  IQ KA SLFNMLK + +  +Y Q FTASHGWFQRFKKR N+  +K+S EAA+AD   AE F  + +  +    Y  EQIFNVDET L+WKRM E TYIH+E K++PG   F+DR+T
Sbjct:   10 SASGGKKKRKAITLEMKLKIIAQHEGGKPVMVIARESGLSQSTVSTILKDKKRISDAVKSSASIKSTVITKKRAGPIDDMEKLLVAWMEEQTQKRIPLSLLTIQAKARSLFNMLKERADDPTYTQMFTASHGWFQRFKKRHNFHTVKVSDEAANADIECAEAFKEELHRIIMAEKYLPEQIFNVDETSLFWKRMLECTYIHQESKTIPG---FRDRVT 224
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. TrEMBL
Match: K7G2I4 (HTH CENPB-type domain-containing protein OS=Pelodiscus sinensis OX=13735 PE=4 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.123e-72
Identity = 125/212 (58.96%), Postives = 154/212 (72.64%), Query Frame = 2 
Query:  248 KSKRSVIDLETKHKIILQFESSKKVKDIAYDLKLSHSTISTILKDKKRILEAVKESTSMNSTIITKKRQGPIHDMEKLLVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSKEGESYDQTFTASHGWFQRFKKRANYQNLKISGEAASADHIAAEEFVVKFNEFLEENNYTKEQIFNVDETGLYWKRMSERTYIHKEEKSMPGFKAFKDRIT 883
            K KR  IDLE K  I+ Q++  + V  +  +L LS STISTI KD   I EAVK S  M STIITKKR GPIHDMEKLLV+W+ED I+KR+ LSL +IQ KA SL   L+ KEG  YDQTF+AS+GWF RF + AN+  +K+S EAASAD  AAE F+ + ++ ++E NY   QIFNVDE GL+WK+M +RTYI KE K+MPGFKAFKD +T
Sbjct:    9 KRKRKAIDLEQKIAIVGQYKRGQAVSFMVRNLGLSKSTISTIKKDSNHIHEAVKGSAPMKSTIITKKRTGPIHDMEKLLVLWIEDQIKKRMTLSLKMIQAKAHSL---LEKKEGYDYDQTFSASYGWFNRF-RCANFYIVKVSEEAASADSKAAETFIKELDKLIKERNYLPNQIFNVDEIGLFWKKMPDRTYIRKEAKTMPGFKAFKDHLT 216
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000005656.1 (pep scaffold:Pmarinus_7.0:GL476578:539135:542172:1 gene:ENSPMAG00000005132.1 transcript:ENSPMAT00000005656.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 170.244 bits (430), Expect = 1.830e-49
Identity = 87/206 (42.23%), Postives = 130/206 (63.11%), Query Frame = 2 
Query:  266 IDLETKHKIILQFESSKKVKDIAYDLKLSHSTISTILKDKKRILEAVKESTSMNSTIITKKRQGPIHDMEKLLVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSKEGESY-DQTFTASHGWFQRFKKRANYQNLKISGEAASADHIAAEEFVVKFNEFLEENNYTKEQIFNVDETGLYWKRMSERTYIHKEEKSMPGFKAFKDRI 880
            + +  K  II ++E  + V+DI+  L L+ ST+  I K  + I    +  T + +  +T+KR   + +ME+ L +W++   + R+PLS A+IQ KA  LFN  K + GES  ++TF AS GW+ +FK R N ++LK++GE A AD  AAE F     E +E   Y+ EQ+FNV+ETGL+WKRM   T++ +EEK+ PGFKA KDR+
Sbjct:   15 LTINMKKYIIRRYEGGETVRDISKSLGLATSTVCGIHKASENIKARAQRMTPLVAAKLTRKRSPLMENMEESLGMWIKHQNEHRMPLSTALIQAKALRLFNDFKKRAGESAANETFGASTGWYAKFKGRYNLRHLKMTGETAGADVEAAEAFKSTLKEIIEGGGYSPEQVFNVNETGLFWKRMPASTFLSREEKTAPGFKASKDRL 220
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000003825.1 (pep scaffold:Pmarinus_7.0:GL476420:1061824:1069341:1 gene:ENSPMAG00000003503.1 transcript:ENSPMAT00000003825.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 160.999 bits (406), Expect = 4.043e-49
Identity = 89/203 (43.84%), Postives = 128/203 (63.05%), Query Frame = 2 
Query:  242 TNKSKRSVIDLETKHKIILQFESSKKVKDIAYDLKLSHSTISTILKDKKRILEAVKESTSMNSTIITKKRQGPIHDMEKLLVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSK----EGESYDQTFTASHGWFQRFKKRANYQNLKISGEAASADHIAAEEFVVKFNE-FLEENNYTKEQIFNVDETGLYWKRMSERTYIHK 835
            + + +R++I +E K  II + E  +    I   L L+ STI TI+KDK+RI+E VK +  + S IITK+  G + +MEK L++W+ED  ++  P+SL  IQ KA SL+  LK K    EG S    F AS GWF RFK RAN +++K+ GEA SAD  A  EF  +  +  +EE  ++ +Q+FN+DE G +WK+M +RTYI K
Sbjct:    7 STRRRRTIITMEMKMDIIRRSEKGETSAAIGRALGLNRSTIGTIIKDKERIVEHVKIAAPVKSIIITKQ-SGVLSEMEKRLLMWIEDRNRRCAPVSLLQIQKKAKSLYEHLKPKVGEGEGASKSDKFVASRGWFHRFKARANLRHVKLMGEATSADVEAGLEFPNRLADVIIEEGGFSAQQVFNMDEMGSFWKKMPDRTYIAK 208
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000003826.1 (pep scaffold:Pmarinus_7.0:GL476420:1061824:1069341:1 gene:ENSPMAG00000003503.1 transcript:ENSPMAT00000003826.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 158.688 bits (400), Expect = 3.302e-48
Identity = 89/203 (43.84%), Postives = 127/203 (62.56%), Query Frame = 2 
Query:  242 TNKSKRSVIDLETKHKIILQFESSKKVKDIAYDLKLSHSTISTILKDKKRILEAVKESTSMNSTIITKKRQGPIHDMEKLLVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSK----EGESYDQTFTASHGWFQRFKKRANYQNLKISGEAASADHIAAEEFVVKFNE-FLEENNYTKEQIFNVDETGLYWKRMSERTYIHK 835
            + + +R++I +E K  II + E  +    I   L L+ STI TI+KDK+RI+E VK +  + S IITK+  G + +MEK L++W+ED  ++  P+SL  IQ KA SL+  LK K    EG S    F AS GWF RFK RAN +++K  GEA SAD  A  EF  +  +  +EE  ++ +Q+FN+DE G +WK+M +RTYI K
Sbjct:    7 STRRRRTIITMEMKMDIIRRSEKGETSAAIGRALGLNRSTIGTIIKDKERIVEHVKIAAPVKSIIITKQ-SGVLSEMEKRLLMWIEDRNRRCAPVSLLQIQKKAKSLYEHLKPKVGEGEGASKSDKFVASRGWFHRFKARANLRHVKSLGEATSADVEAGLEFPNRLADVIIEEGGFSAQQVFNMDEMGSFWKKMPDRTYIAK 208
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000004972.1 (pep scaffold:Pmarinus_7.0:GL476545:74372:75575:-1 gene:ENSPMAG00000004517.1 transcript:ENSPMAT00000004972.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 148.673 bits (374), Expect = 1.600e-42
Identity = 106/212 (50.00%), Postives = 129/212 (60.85%), Query Frame = 2 
Query:  248 KSKRSVIDLETKHKIILQFESSKKVKDIAYDLKLSHSTISTILKDKKRILEAVKESTSMNSTIITKKRQGPIHDMEKLLVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSKEGESYDQTFTASHGWFQRFKKRANYQNLKISGEAASADHIAAEEFVVKFNEFLEENNYTKEQIFNVDETGLYWKRMSERTYIHKEEKSMPGFKAFKDRIT 883
            K KR  I LE K KII Q E+ K V  IA D +LS STIS I+KDKKRI+EA        STII++KR  P+ +ME+LLV WMED IQKR+PLSL  IQ KA  LF  LK +     D T+  + G F   K   N+ ++KISG AASAD   AE F  + ++ + E NY  EQIFNVDETG              + K+M GFKAFKDR+T
Sbjct:    3 KKKRKAITLEQKMKIINQHEAGKAVTVIARDNQLSQSTISAIVKDKKRIMEA--------STIISRKRTEPLEEMEQLLVTWMEDRIQKRMPLSLLTIQAKARMLFYDLKKRYD---DATYNVTAG-FSVSKTCHNFHSIKISGAAASADAEGAERFKGELHKIIVEENYLPEQIFNVDETG-------------TDAKTMAGFKAFKDRLT 189
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000001313.1 (pep scaffold:Pmarinus_7.0:GL487606:277:3092:-1 gene:ENSPMAG00000001181.1 transcript:ENSPMAT00000001313.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 149.058 bits (375), Expect = 2.664e-42
Identity = 79/197 (40.10%), Postives = 118/197 (59.90%), Query Frame = 2 
Query:  290 IILQFESSKKVKDIAYDLKLSHSTISTILKDKKRILEAVKESTSMNSTIITKKRQGPIHDMEKLLVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSKEGESYDQTFTASHGWFQRFKKRANYQNLKISGEAASADHIAAEEFVVKFNEFLEENNYTKEQIFNVDETGLYWKRMSERTYIHKEEKSMPGFKAFKDRI 880
            II Q+E  + V+DI+  L L+ ST+  I K  + I    +  T   +  + +KR   + +ME+ L +W++   + R+PLS A+IQ KA      L+ +E     +TF AS GW+ +FK R N  +LK++GE A AD  AAE F     E +E   Y+ EQ+FNV+ET L+WKRM   T++ +E+K+ PGFKA KDR+
Sbjct:   23 IIRQYEGGETVRDISKSLGLATSTVCGIRKASENIEAKAQRMTPFVAATLMRKRSPLMENMEESLGMWIKHQNEHRMPLSTALIQVKALIQAKALRLEESRQA-ETFGASTGWYAKFKGRYNLHHLKMTGETAGADVEAAEAFKSTLKEIIEGGGYSPEQVFNVNETRLFWKRMPASTFLSREKKTAPGFKASKDRL 218
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Nematostella
Match: EDO40000 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S8J7])

HSP 1 Score: 52.373 bits (124), Expect = 6.051e-8
Identity = 45/166 (27.11%), Postives = 78/166 (46.99%), Query Frame = 2 
Query:  401 AVKESTSMNSTIITKKRQGPI--HDMEKLLVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSKEGESYDQTFTASHGWFQRFKKRANYQNLKISGEAASADHIAAEEFVVKFNEFLEE---NNYTKEQIFNVDETGLYWKRMSERTYIHKEEKSMPGFKAFKDRIT 883
            ++ ++ S+ S  + ++R  P    D+EK L  W   + Q+ +P+S  +++  A    N L S         F  S+GW  R+KKR +     +SGE  S       E    + E       + Y  E +F+ DE GL++K + ++  +H + +S  G K  K R+T
Sbjct:    8 SISDAASLVSAPL-RQRLTPCGNEDLEKALYTWSVRMKQQGVPISGPVLKETAIHFANELIS----IVLSGFVGSNGWIDRWKKRQDVAFKTVSGEILS----CTLEMTASWEESTLPTLLSKYALEDMFDADEFGLFYKALPDK-LMHLKLQSCVGGKQSKVRLT 163
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Nematostella
Match: EDO44738 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RUQ6])

HSP 1 Score: 48.521 bits (114), Expect = 1.528e-6
Identity = 43/182 (23.63%), Postives = 86/182 (47.25%), Query Frame = 2 
Query:  308 SSKKVKDIAYDLKLSHSTISTILKDKKRILEAVKESTSMNSTIITKKRQGPIHDMEKLLVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSKEGESYDQTFTASHGWFQRFKKRANYQNLKISGEAASADHIAAEEFVVKFNEFLEE--NNYTKEQIFNVDETGLYWKRMSERTYIHKEEKS 847
            S +K+ DI    ++  +T+  ILK K  IL+A +++       +  +      D+ +L   W E +  +   +S  ++Q KA +    L  K+       F AS+GW + F++R       IS  A+ + +  +     ++ E + E  + Y    I+N+ ETGLY++ + ++  + + E +
Sbjct:   24 SQRKLADI---YQIGKTTVHEILKKKDDILKAYEQNVDGGRKRVCTR--SAYSDINRLAWQWYERMRAQGNQISGPMLQEKARTFAAELDMKD-------FRASNGWLEGFRRRHG-----ISFGASFSGYETSVNVTTEWTEKIMEVTDGYRSTDIYNLVETGLYYRALPDKNLVPETEST 188
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000031980.1 (pep primary_assembly:ASM223467v1:3:6881985:6888319:-1 gene:ENSORLG00000025652.1 transcript:ENSORLT00000031980.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 89.3521 bits (220), Expect = 6.730e-20
Identity = 56/170 (32.94%), Postives = 80/170 (47.06%), Query Frame = 2 
Query:  374 LKDKKRILEAVKESTSMNSTIITKKRQGPIHDMEKLLVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSKEGESYDQTFTASHGWFQRFKKRANYQNLKISGEAASADHIAAEEFVVKFNEFLEENNYTKEQIFNVDETGLYWKRMSERTYIHKEEKSMPGFKAFKDRIT 883
            + DK ++LE ++E  S  +  I+  +     D +++  +  ED        S + +  + C+                F AS GWF+ FKK+A   N                    KF   +EE  Y  EQIFN+DETGL+WKRM  RT+I +EE   PGFKA KDR+T
Sbjct:   25 IADKVKLLEMLREGKSYAAVAISFNK-----DAKRVATVQEEDAGP-----STSAVHAEPCA----------------FNASKGWFENFKKQAFVNN--------------------KFKAIIEEGGYKPEQIFNIDETGLFWKRMPSRTFIMQEEAKAPGFKAQKDRLT 148
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BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000036785.1 (pep primary_assembly:ASM223467v1:22:11796267:11802170:-1 gene:ENSORLG00000024024.1 transcript:ENSORLT00000036785.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 63.1586 bits (152), Expect = 7.476e-11
Identity = 36/93 (38.71%), Postives = 53/93 (56.99%), Query Frame = 2 
Query:  608 FTASHGWFQRFKKRANYQNLKISGEAASADHIAAEEFV-VKFNEFLEENNYTKEQIFNVDETGLYWKRMSERTYIHKEEKSMPGFKAFKDRIT 883
            F AS GWF +F+KR   +++ + GEA  AD   AE +   KF   ++E  Y  EQ+FN+ ETGL+WK++         +    GF+  KDR+T
Sbjct:  102 FYASKGWFDKFQKRFGLKSVSLQGEATPADAAGAEAYAKTKFKTIIKEGTYKPEQVFNMGETGLFWKQIP-------SQAKASGFRGQKDRVT 187
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BLAST of HTH CENPB-type domain-containing protein vs. Planmine SMEST
Match: SMESG000071434.1 (SMESG000071434.1)

HSP 1 Score: 115.161 bits (287), Expect = 6.460e-29
Identity = 71/196 (36.22%), Postives = 105/196 (53.57%), Query Frame = 2 
Query:  272 LETKHKIILQFESSKKVKDIAYDLKLSHSTISTILKDKKRILEAVKESTSMNSTIITKKRQGPIHDMEKLLVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSKEGESYDQTFTASHGWFQRFKKRANYQNLKISGEAASADHIAAEEFVVKFNEFLEENNYTKEQIFNVDETGLYWKRMSERTYIHKEEKSMPGF 859
            ++ K +I+ +    +K   IA  L L+ +T+ TI K +K I  AV    S++S   ++ R   I  MEK L IW+ D  Q+RI L   II+ KA   +N LK     S +  F AS GW +R KK      +KI GE ASA H AA  +  K  + +E+  YT +Q+FN DE GL W++     ++++E K+ P  
Sbjct:  134 MKMKKQILDRLLKGEKASHIAKTLNLNEATVRTIKKKEKEIRCAVAAGCSLSSKYSSRLRVPIIEKMEKALSIWINDSCQERIRLDSNIIRQKALKTYNYLKQNRESSVNPDFLASKGWLERVKKWFTLHKIKIQGEIASAYHAAAISYPEKILKIIEDQGYTWKQVFNADEIGLRWQKCP-IGHLYQENKTAPDL 328
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. Planmine SMEST
Match: SMESG000032104.1 (SMESG000032104.1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.648e-19
Identity = 48/124 (38.71%), Postives = 71/124 (57.26%), Query Frame = 2 
Query:  470 MEKLLVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSKEG------------ESYDQT-----FTASHGWFQRFKKRANYQNLKISGEAASADHIAAEEFVVKFNEFLEENNYTKEQIFNVDET 790
            MEK L+IW+ED  QKR+PL   +I+ KA  +FN LK                ES++Q      F+ S GWF+ F+KR +  N+K+ GE ASAD  AA+ F  +  + +EE+ YT +Q + + +T
Sbjct:    4 MEKALMIWIEDNTQKRMPLDGNVIRYKAVKIFNHLKETRPAPALPNQPLTSQESFEQQTPIREFSGSKGWFENFEKRFSLHNVKLQGEIASADEAAAKIFPKELAKIIEEHGYTADQAYYIRQT 127
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. Planmine SMEST
Match: SMESG000032685.1 (SMESG000032685.1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.657e-19
Identity = 57/163 (34.97%), Postives = 87/163 (53.37%), Query Frame = 2 
Query:  311 SKKVKDIAYDLKLSHSTISTIL-KDKKRILEAVKESTSMNSTIITKKRQGPIHDMEKLLVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSK---------EGESYDQTFTASHGWFQRFKKRANYQNLKISGEAASADHIAAEEFVVKFNEFLEENNYTKEQ 769
             +K  +IA  + L+ +T+ TI  +D+ +I EA K +TS+++  +T+ R   I  ME L+ IW+E+             QTKA SLF  +KSK            + ++TF A+HGW +RFK RAN  +  + GEAASAD   AE ++ +      E  Y  +Q
Sbjct:  564 GEKAVEIANAVGLAATTVRTIRDRDRDKIREAAKSATSLDAKTMTRTRTALIIKMESLVSIWIEN-------------QTKAKSLFYDIKSKAVSNDNASSSNTNKNETFEATHGWVERFKVRANLHSTALKGEAASADITIAEPYLTELKALFHEGGYDPKQ 713
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. Planmine SMEST
Match: SMESG000013943.1 (SMESG000013943.1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.180e-19
Identity = 71/217 (32.72%), Postives = 105/217 (48.39%), Query Frame = 2 
Query:  278 TKHKIIL--QFESSKKVKDIAYDLKLSHSTI------STILKDKKRILEAVKESTSMNSTIITKKRQGPIHD--MEKLLVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSKEGESYDQTFTASHGWFQRFKKRANYQNLKISGEAASADHIAAEEFVVKFNEFLEENNYTKEQIFNVDETGLYWKRMSERTYI-----HKEEKSMPGFKAFKDRIT 883
            TK K++   Q ++ K+   +A D  +S ST+        +++    ILE        +  I+ +KR     D  ++  L  W+     + +P+S  I++ KA   FN  +   GE  D  F AS+ W  RFKKR     + +SGE  SAD   A  +     +FLEE  YT +Q++N DETGL +K +  RT       HK E    GFK  KDR+T
Sbjct:   13 TKEKLLALDQLKNGKQQTQLARDFGISESTVRGWKTNEIMIRSLPNILE--------DELILQRKRVKSASDNVLDSALYQWLVQARSEGVPISGPILKAKA-EKFN--RRINGE--DSKFKASNIWLDRFKKRHTISQVLVSGEIHSADKEDANSYPFLLKKFLEEGCYTADQVYNCDETGLCYKMLPNRTLATKTDNHKRE----GFKKRKDRLT 212
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. Planmine SMEST
Match: SMESG000027161.1 (SMESG000027161.1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.263e-17
Identity = 53/139 (38.13%), Postives = 72/139 (51.80%), Query Frame = 2 
Query:  482 LVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSKEGESYDQTFTASHGWFQRFKKRANYQNLKISGEAASADHIAAEEFVVKFNEFLEENNYTKEQIFNVDETGLYWKRMSERTYI-----HKEEKSMPGFKAFKDRIT 883
            L  W      +R+P+S  I++ +A   FN   + E    D  F AS+GW  RFKKR     + + GE  SAD  AA  +     +FLEE  YT +Q++N DET L +K +  RT+      HK E    GFK  KDR+T
Sbjct:  276 LYQWFVQARSERVPISGPILKAQA-EKFNRRINGE----DSKFKASNGWLDRFKKRHAISQVLVLGEIRSADKDAANSYPFWLKKFLEEGCYTADQVYNCDETDLCYKILPNRTFTTKTDNHKRE----GFKKRKDRLT 405
The following BLAST results are available for this feature:
BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
TIGD15.568e-5144.80tigger transposable element derived 1 [Source:HGNC... [more]
JRKL2.634e-2530.09JRK like [Source:HGNC Symbol;Acc:HGNC:6200][more]
TIGD21.490e-2229.58tigger transposable element derived 2 [Source:HGNC... [more]
TIGD21.490e-2229.58tigger transposable element derived 2 [Source:HGNC... [more]
JRK8.079e-2229.55Jrk helix-turn-helix protein [Source:HGNC Symbol;A... [more]
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BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 3
Match NameE-valueIdentityDescription
kif61.501e-1524.55kinesin family member 6 [Source:Xenbase;Acc:XB-GEN... [more]
ENSXETT00000046714.11.806e-1330.56pep primary_assembly:Xenopus_tropicalis_v9.1:KV460... [more]
apmapl9.167e-826.53adipocyte plasma membrane associated protein LIKE ... [more]
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BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Jrkl7.669e-2631.02Jrk-like [Source:MGI Symbol;Acc:MGI:1924782][more]
Tigd26.159e-2229.11tigger transposable element derived 2 [Source:MGI ... [more]
Jrk2.670e-1827.48jerky [Source:MGI Symbol;Acc:MGI:106214][more]
Tigd47.629e-1529.55tigger transposable element derived 4 [Source:MGI ... [more]
Tigd59.827e-1426.11tigger transposable element derived 5 [Source:MGI ... [more]
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BLAST of HTH CENPB-type domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q96MW7|TIGD1_HUMAN2.674e-5044.80Tigger transposable element-derived protein 1 OS=H... [more]
sp|B2RRL2|JERKL_MOUSE5.364e-2531.02Jerky protein homolog-like OS=Mus musculus OX=1009... [more]
sp|Q9Y4A0|JERKL_HUMAN1.265e-2430.09Jerky protein homolog-like OS=Homo sapiens OX=9606... [more]
sp|Q4W5G0|TIGD2_HUMAN7.155e-2229.58Tigger transposable element-derived protein 2 OS=H... [more]
sp|O75564|JERKY_HUMAN3.880e-2129.55Jerky protein homolog OS=Homo sapiens OX=9606 GN=J... [more]
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BLAST of HTH CENPB-type domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1U8D5D78.167e-8361.11tigger transposable element-derived protein 1-like... [more]
K7GEK81.343e-7258.96HTH CENPB-type domain-containing protein OS=Pelodi... [more]
K7FZA21.362e-7257.08HTH CENPB-type domain-containing protein OS=Pelodi... [more]
A0A5F9D9H01.382e-7259.17Uncharacterized protein OS=Oryctolagus cuniculus O... [more]
K7G2I46.123e-7258.96HTH CENPB-type domain-containing protein OS=Pelodi... [more]
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BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSPMAT00000005656.11.830e-4942.23pep scaffold:Pmarinus_7.0:GL476578:539135:542172:1... [more]
ENSPMAT00000003825.14.043e-4943.84pep scaffold:Pmarinus_7.0:GL476420:1061824:1069341... [more]
ENSPMAT00000003826.13.302e-4843.84pep scaffold:Pmarinus_7.0:GL476420:1061824:1069341... [more]
ENSPMAT00000004972.11.600e-4250.00pep scaffold:Pmarinus_7.0:GL476545:74372:75575:-1 ... [more]
ENSPMAT00000001313.12.664e-4240.10pep scaffold:Pmarinus_7.0:GL487606:277:3092:-1 gen... [more]
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BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2
Match NameE-valueIdentityDescription
EDO400006.051e-827.11Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO447381.528e-623.63Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2
Match NameE-valueIdentityDescription
ENSORLT00000031980.16.730e-2032.94pep primary_assembly:ASM223467v1:3:6881985:6888319... [more]
ENSORLT00000036785.17.476e-1138.71pep primary_assembly:ASM223467v1:22:11796267:11802... [more]
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BLAST of HTH CENPB-type domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000071434.16.460e-2936.22SMESG000071434.1[more]
SMESG000032104.12.648e-1938.71SMESG000032104.1[more]
SMESG000032685.12.657e-1934.97SMESG000032685.1[more]
SMESG000013943.14.180e-1932.72SMESG000013943.1[more]
SMESG000027161.13.263e-1738.13SMESG000027161.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30006437 ID=SMED30006437|Name=HTH CENPB-type domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=883bp
ATTTAACTTTAAGTCACAGGTAGTCCCCGACTTACGACCATCCGCACTTA
CGACCAATTTTTTTTCAATTTATTAATAGAAAATGATTAAAATAGTTTCG
TAGTCTTCCCTATAATATGTATATGAGAAAAATTTGTTAAAAAAACACCC
AATGTACAAGATTCGATTTATTTAAGCATAAATAATACGTTTGTTTTAGT
GAATAATTTTAATCATCCCAAAAATGGCTGGAACTAGTAAAACTAATAAA
AGCAAAAGAAGTGTTATAGACTTGGAAACTAAACATAAAATAATATTACA
ATTTGAAAGTAGTAAAAAAGTAAAAGATATAGCATATGATCTTAAACTGT
CTCATTCGACAATATCTACAATTTTAAAAGATAAAAAACGAATTTTGGAA
GCTGTCAAAGAATCGACATCTATGAATTCTACAATAATAACAAAAAAAAG
ACAAGGTCCCATACATGATATGGAAAAACTGTTAGTAATTTGGATGGAGG
ATTTGATTCAAAAACGAATTCCTTTAAGTCTCGCAATTATACAAACCAAA
GCATGCAGTCTTTTCAATATGTTAAAATCAAAAGAAGGAGAAAGCTATGA
TCAGACTTTTACTGCAAGCCATGGTTGGTTTCAAAGATTCAAGAAGAGAG
CTAATTATCAAAATCTAAAAATTAGTGGAGAGGCAGCTAGTGCTGATCAT
ATAGCTGCTGAGGAATTTGTTGTTAAATTCAACGAGTTTTTAGAAGAAAA
CAATTATACAAAGGAACAAATATTTAATGTGGATGAGACCGGTCTGTATT
GGAAGAGGATGTCTGAACGTACGTATATTCATAAGGAGGAAAAAAGTATG
CCAGGGTTTAAGGCTTTTAAGGACCGTATAACA
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protein sequence of SMED30006437-orf-1

>SMED30006437-orf-1 ID=SMED30006437-orf-1|Name=SMED30006437-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=220bp
MAGTSKTNKSKRSVIDLETKHKIILQFESSKKVKDIAYDLKLSHSTISTI
LKDKKRILEAVKESTSMNSTIITKKRQGPIHDMEKLLVIWMEDLIQKRIP
LSLAIIQTKACSLFNMLKSKEGESYDQTFTASHGWFQRFKKRANYQNLKI
SGEAASADHIAAEEFVVKFNEFLEENNYTKEQIFNVDETGLYWKRMSERT
YIHKEEKSMPGFKAFKDRIT
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
Vocabulary: INTERPRO
TermDefinition
IPR006600HTH_CenpB_DNA-bd_dom
IPR007889HTH_Psq
IPR009057Homeobox-like_sf
Vocabulary: molecular function
TermDefinition
GO:0003677DNA binding
GO:0003676nucleic acid binding