SMED30006417

Overview


Name	SMED30006417
Smed ID	SMED30006417
Length (bp)	1387

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of SMED30006417 (SMED30006417) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30006417 (SMED30006417) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30006417 (SMED30006417) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30006417 (SMED30006417) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30006417

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 1

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication	Specimen	Lifecycle	Evidence
parenchymal cell	SMED30006417	SMESG000020671.1	dd_Smed_v4_10279_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018

Note: Hover over icons to view figure legend

Homology

[Close]

BLAST of SMED30006417 vs. Ensembl Human
Match: CNBP (CCHC-type zinc finger nucleic acid binding protein [Source:HGNC Symbol;Acc:HGNC:13164])

HSP 1 Score: 96.2857 bits (238), Expect = 9.079e-23
Identity = 62/186 (33.33%), Postives = 89/186 (47.85%), Query Frame = 3

Query:  135 LNMSTCFKCGTIGHIARNCTNSQSYSESINGN----FVTGRVFVRNKRNQNFIDKSI--ICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSK---KVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNCNFN 665
            ++ + CFKCG  GH AR C         +       F + R F        F+  S+  ICY+C + GH+A++C+ +   CY CG+ GH+ K+C    +   + CYNC    HL +DC  +  +E          H  +   +  +CY C + GH+A NC K S  E  CYRC   GHLAR C   
Sbjct:    1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGF-------QFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC--DHADEQKCYSCGEFGHIQKDCTKV-KCYRCGETGHVAINCSKTS--EVNCYRCGESGHLARECTIE 174

HSP 2 Score: 56.225 bits (134), Expect = 9.355e-9
Identity = 34/114 (29.82%), Postives = 52/114 (45.61%), Query Frame = 3

Query:  135 LNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCPVNET 476
            L    C+ CG  GHIA++C   +   E    N        R+  + +       CY C + GHI ++C      CY CG+ GH+   C  +S+  CY C  + HL ++C +  T
Sbjct:   69 LQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHAD----EQKCYSCGEFGHIQKDCTK--VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEAT 176

[Close]

BLAST of SMED30006417 vs. Ensembl Human
Match: CNBP (CCHC-type zinc finger nucleic acid binding protein [Source:HGNC Symbol;Acc:HGNC:13164])

HSP 1 Score: 94.3597 bits (233), Expect = 5.538e-22
Identity = 63/187 (33.69%), Postives = 89/187 (47.59%), Query Frame = 3

Query:  135 LNMSTCFKCGTIGHIARNCTNSQSYSESINGN----FVTGRVFVRNKRNQNFIDKSI--ICYKCNKVGHIARNCE-SESAVCYGCGKEGHLFKECVSSSK---KVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNCNFN 665
            ++ + CFKCG  GH AR C         +       F + R F        F+  S+  ICY+C + GH+A++C+  E   CY CG+ GH+ K+C    +   + CYNC    HL +DC  +  +E          H  +   +  +CY C + GH+A NC K S  E  CYRC   GHLAR C   
Sbjct:    1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGF-------QFVSSSLPDICYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC--DHADEQKCYSCGEFGHIQKDCTKV-KCYRCGETGHVAINCSKTS--EVNCYRCGESGHLARECTIE 175

HSP 2 Score: 54.6842 bits (130), Expect = 3.124e-8
Identity = 33/110 (30.00%), Postives = 51/110 (46.36%), Query Frame = 3

Query:  147 TCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCPVNET 476
             C+ CG  GHIA++C   +   E    N        R+  + +       CY C + GHI ++C      CY CG+ GH+   C  +S+  CY C  + HL ++C +  T
Sbjct:   74 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHAD----EQKCYSCGEFGHIQKDCTK--VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEAT 177

[Close]

BLAST of SMED30006417 vs. Ensembl Human
Match: CNBP (CCHC-type zinc finger nucleic acid binding protein [Source:HGNC Symbol;Acc:HGNC:13164])

HSP 1 Score: 93.2041 bits (230), Expect = 1.555e-21
Identity = 63/188 (33.51%), Postives = 90/188 (47.87%), Query Frame = 3

Query:  135 LNMSTCFKCGTIGHIARNCTNSQSYSESINGN----FVTGRVFVRNKRNQNFIDKSI--ICYKCNKVGHIARNCESESAV--CYGCGKEGHLFKECVSSSK---KVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNCNFN 665
            ++ + CFKCG  GH AR C         +       F + R F        F+  S+  ICY+C + GH+A++C+ +  V  CY CG+ GH+ K+C    +   + CYNC    HL +DC  +  +E          H  +   +  +CY C + GH+A NC K S  E  CYRC   GHLAR C   
Sbjct:    1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGF-------QFVSSSLPDICYRCGESGHLAKDCDLQEDVEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC--DHADEQKCYSCGEFGHIQKDCTKV-KCYRCGETGHVAINCSKTS--EVNCYRCGESGHLARECTIE 176

HSP 2 Score: 56.6102 bits (135), Expect = 7.346e-9
Identity = 34/116 (29.31%), Postives = 54/116 (46.55%), Query Frame = 3

Query:  129 LILNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCPVNET 476
            L  ++  C+ CG  GHIA++C   +   E    N        R+  + +       CY C + GHI ++C      CY CG+ GH+   C  +S+  CY C  + HL ++C +  T
Sbjct:   69 LQEDVEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHAD----EQKCYSCGEFGHIQKDCTK--VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEAT 178

[Close]

BLAST of SMED30006417 vs. Ensembl Human
Match: CNBP (CCHC-type zinc finger nucleic acid binding protein [Source:HGNC Symbol;Acc:HGNC:13164])

HSP 1 Score: 92.8189 bits (229), Expect = 1.565e-21
Identity = 58/179 (32.40%), Postives = 84/179 (46.93%), Query Frame = 3

Query:  135 LNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSK---KVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNCNF 662
            ++ + CFKCG  GH AR C         +            ++    F     ICY+C + GH+A++C+ +   CY CG+ GH+ K+C    +   + CYNC    HL +DC  +  +E          H  +   +  +CY C + GH+A NC K S  E  CYRC   GHLAR C  
Sbjct:    1 MSSNECFKCGRSGHWARECPTGGGRGRGMR-----------SRGRGGFTSDRDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC--DHADEQKCYSCGEFGHIQKDCTKV-KCYRCGETGHVAINCSKTS--EVNCYRCGESGHLARECTI 163

HSP 2 Score: 56.6102 bits (135), Expect = 6.533e-9
Identity = 34/114 (29.82%), Postives = 52/114 (45.61%), Query Frame = 3

Query:  135 LNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCPVNET 476
            L    C+ CG  GHIA++C   +   E    N        R+  + +       CY C + GHI ++C      CY CG+ GH+   C  +S+  CY C  + HL ++C +  T
Sbjct:   59 LQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHAD----EQKCYSCGEFGHIQKDCTK--VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEAT 166

[Close]

BLAST of SMED30006417 vs. Ensembl Human
Match: CNBP (CCHC-type zinc finger nucleic acid binding protein [Source:HGNC Symbol;Acc:HGNC:13164])

HSP 1 Score: 92.0485 bits (227), Expect = 2.482e-21
Identity = 60/182 (32.97%), Postives = 86/182 (47.25%), Query Frame = 3

Query:  135 LNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSI--ICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSK---KVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNCNFN 665
            ++ + CFKCG  GH AR C         +              R   F+  S+  ICY+C + GH+A++C+ +   CY CG+ GH+ K+C    +   + CYNC    HL +DC  +  +E          H  +   +  +CY C + GH+A NC K S  E  CYRC   GHLAR C   
Sbjct:    1 MSSNECFKCGRSGHWARECPTGGGRGRGMR----------SRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC--DHADEQKCYSCGEFGHIQKDCTKV-KCYRCGETGHVAINCSKTS--EVNCYRCGESGHLARECTIE 167

HSP 2 Score: 56.6102 bits (135), Expect = 7.886e-9
Identity = 34/114 (29.82%), Postives = 52/114 (45.61%), Query Frame = 3

Query:  135 LNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCPVNET 476
            L    C+ CG  GHIA++C   +   E    N        R+  + +       CY C + GHI ++C      CY CG+ GH+   C  +S+  CY C  + HL ++C +  T
Sbjct:   62 LQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHAD----EQKCYSCGEFGHIQKDCTK--VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEAT 169

[Close]

BLAST of SMED30006417 vs. Ensembl Celegans
Match: K08D12.3 (pep chromosome:WBcel235:IV:1710265:1711127:1 gene:WBGene00019537.1 transcript:K08D12.3a.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:K08D12.3)

HSP 1 Score: 51.6026 bits (122), Expect = 9.020e-8
Identity = 42/143 (29.37%), Postives = 60/143 (41.96%), Query Frame = 3

Query:  297 CYKCNKVGHIARNC---ESES--------AVCYGCGKEGHLFKECVSSSKKVCYNCNSTE-----------HLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKK-SNKESVCYRCNRPGHLARNC 656
            CYKC + GHI+RNC   ES+         + CY C + GH  ++C                          H  +DCP         +        +  SF   +CYNC   GHI+R C +  S +E  CY+C   GH++R+C
Sbjct:    6 CYKCQQPGHISRNCPNGESDGGRRGGGGGSTCYNCQETGHFSRDCPKGGSGGGQRGGGGGGGSCYNCGGRGHYSRDCPS--ARSEGGSGGYGGRGGEGRSFGGQKCYNCGRSGHISRECTESGSAEEKRCYQCQETGHISRDC 146

HSP 2 Score: 46.9802 bits (110), Expect = 3.629e-6
Identity = 45/187 (24.06%), Postives = 70/187 (37.43%), Query Frame = 3

Query:  135 LNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCE------------SESAVCYGCGKEGHLFKECVSS-------------------SKKVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSN 602
            ++   C+KC   GHI+RNC N +S      G   +                   CY C + GH +R+C                  CY CG  GH  ++C S+                     + CYNC  + H+ ++C                  T+  S    +CY C++ GHI+R+CP ++N
Sbjct:    1 MSDRNCYKCQQPGHISRNCPNGESDGGRRGGGGGS------------------TCYNCQETGHFSRDCPKGGSGGGQRGGGGGGGSCYNCGGRGHYSRDCPSARSEGGSGGYGGRGGEGRSFGGQKCYNCGRSGHISREC------------------TESGSAEEKRCYQCQETGHISRDCPSQTN 151

[Close]

BLAST of SMED30006417 vs. Ensembl Celegans
Match: F40F12.9 (pep chromosome:WBcel235:III:9913021:9913625:1 gene:WBGene00043995.1 transcript:F40F12.9b.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:F40F12.9)

HSP 1 Score: 46.9802 bits (110), Expect = 1.097e-6
Identity = 20/44 (45.45%), Postives = 30/44 (68.18%), Query Frame = 3

Query:  294 ICYKCNKVGHIARNC-ESESAVCYGCGKEGHLFKECVSSSKKVC 422
            ICY C+K+GH++R+C E +   C+ CG  GH ++EC S  +K C
Sbjct:   28 ICYNCHKLGHMSRDCPEEQPKACFKCGFRGHYYRECPSQIEKKC 71

[Close]

BLAST of SMED30006417 vs. Ensembl Celegans
Match: F40F12.9 (pep chromosome:WBcel235:III:9913021:9913730:1 gene:WBGene00043995.1 transcript:F40F12.9a.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:F40F12.9)

HSP 1 Score: 46.2098 bits (108), Expect = 3.130e-6
Identity = 19/42 (45.24%), Postives = 29/42 (69.05%), Query Frame = 3

Query:  294 ICYKCNKVGHIARNC-ESESAVCYGCGKEGHLFKECVSSSKK 416
            ICY C+K+GH++R+C E +   C+ CG  GH ++EC S  +K
Sbjct:   28 ICYNCHKLGHMSRDCPEEQPKACFKCGFRGHYYRECPSQIEK 69

[Close]

BLAST of SMED30006417 vs. Ensembl Celegans
Match: F40F12.9 (pep chromosome:WBcel235:III:9913021:9914075:1 gene:WBGene00043995.1 transcript:F40F12.9a.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:F40F12.9)

HSP 1 Score: 46.2098 bits (108), Expect = 3.130e-6
Identity = 19/42 (45.24%), Postives = 29/42 (69.05%), Query Frame = 3

Query:  294 ICYKCNKVGHIARNC-ESESAVCYGCGKEGHLFKECVSSSKK 416
            ICY C+K+GH++R+C E +   C+ CG  GH ++EC S  +K
Sbjct:   28 ICYNCHKLGHMSRDCPEEQPKACFKCGFRGHYYRECPSQIEK 69

[Close]

BLAST of SMED30006417 vs. Ensembl Fly
Match: CNBP (gene:FBgn0034802 transcript:FBtr0303464)

HSP 1 Score: 92.0485 bits (227), Expect = 1.410e-21
Identity = 60/177 (33.90%), Postives = 82/177 (46.33%), Query Frame = 3

Query:  135 LNMS-TCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSI-ICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNCN 659
            ++MS TC+KC   GH AR+C+          G    G        +   + ++   CYKCN+ GH AR C  E+  CY C   GH+ K+C  +    CY CN T H V++CP    E   +N                 CY C   GHI++NCP+ S     CY C + GHL R C+
Sbjct:    1 MSMSATCYKCNRPGHFARDCSLGGGGGPGGVGGGGGGGGGGMRGNDGGGMRRNREKCYKCNQFGHFARACPEEAERCYRCNGIGHISKDCTQADNPTCYRCNKTGHWVRNCPEAVNERGPTNV---------------SCYKCNRTGHISKNCPETS---KTCYGCGKSGHLRRECD 159

[Close]

BLAST of SMED30006417 vs. Ensembl Fly
Match: CNBP (gene:FBgn0034802 transcript:FBtr0071994)

HSP 1 Score: 92.0485 bits (227), Expect = 1.410e-21
Identity = 60/177 (33.90%), Postives = 82/177 (46.33%), Query Frame = 3

Query:  135 LNMS-TCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSI-ICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNCN 659
            ++MS TC+KC   GH AR+C+          G    G        +   + ++   CYKCN+ GH AR C  E+  CY C   GH+ K+C  +    CY CN T H V++CP    E   +N                 CY C   GHI++NCP+ S     CY C + GHL R C+
Sbjct:    1 MSMSATCYKCNRPGHFARDCSLGGGGGPGGVGGGGGGGGGGMRGNDGGGMRRNREKCYKCNQFGHFARACPEEAERCYRCNGIGHISKDCTQADNPTCYRCNKTGHWVRNCPEAVNERGPTNV---------------SCYKCNRTGHISKNCPETS---KTCYGCGKSGHLRRECD 159

[Close]

BLAST of SMED30006417 vs. Ensembl Zebrafish
Match: cnbpa (CCHC-type zinc finger, nucleic acid binding protein a [Source:ZFIN;Acc:ZDB-GENE-030131-5045])

HSP 1 Score: 88.9669 bits (219), Expect = 1.823e-20
Identity = 55/181 (30.39%), Postives = 82/181 (45.30%), Query Frame = 3

Query:  129 LILNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSK---KVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNCNF 662
            + ++ S CF CG  GH  +NC N+                            K + CY+C + GHIAR+CE     CY C + GH+ ++C    K   + CYNC    H+ +DC  +   E          H  ++  +  +CY C + GH+A  C K +  E  CY C + GHLAR+C+ 
Sbjct:    1 MDMSTSECFGCGRSGHWIKNCPNAGRGRGR-----------------GRGRGKDLFCYRCGEQGHIARDCEQTEDACYNCHRSGHISRDCKEPKKEREQCCYNCGKAGHVARDC--DHANEQKCYSCGGFGHIQKLCDKV-KCYRCGEIGHVAVQCSKAT--EVNCYNCGKTGHLARDCSI 159

[Close]

Query:  129 LILNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSK---KVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNCNF 662
            + ++ S CF CG  GH  +NC N+                            K + CY+C + GHIAR+CE     CY C + GH+ ++C    K   + CYNC    H+ +DC  +   E          H  ++  +  +CY C + GH+A  C K +  E  CY C + GHLAR+C+ 
Sbjct:    1 MDMSTSECFGCGRSGHWIKNCPNAGRGRGR-----------------GRGRGKDLFCYRCGEQGHIARDCEQTEDACYNCHRSGHISRDCKEPKKEREQCCYNCGKAGHVARDC--DHANEQKCYSCGGFGHIQKLCDKV-KCYRCGEIGHVAVQCSKAT--EVNCYNCGKTGHLARDCSI 159

[Close]

Query:  129 LILNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSK---KVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNCNF 662
            + ++ S CF CG  GH  +NC N+                            K + CY+C + GHIAR+CE     CY C + GH+ ++C    K   + CYNC    H+ +DC  +   E          H  ++  +  +CY C + GH+A  C K +  E  CY C + GHLAR+C+ 
Sbjct:    1 MDMSTSECFGCGRSGHWIKNCPNAGRGRGR-----------------GRGRGKDLFCYRCGEQGHIARDCEQTEDACYNCHRSGHISRDCKEPKKEREQCCYNCGKAGHVARDC--DHANEQKCYSCGGFGHIQKLCDKV-KCYRCGEIGHVAVQCSKAT--EVNCYNCGKTGHLARDCSI 159

[Close]

BLAST of SMED30006417 vs. Ensembl Zebrafish
Match: cnbpb (CCHC-type zinc finger, nucleic acid binding protein b [Source:ZFIN;Acc:ZDB-GENE-030131-7782])

HSP 1 Score: 86.6557 bits (213), Expect = 1.101e-19
Identity = 54/179 (30.17%), Postives = 79/179 (44.13%), Query Frame = 3

Query:  135 LNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSK---KVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNCNF 662
            ++ + CF CG  GH  +NC N+                            K + CY+C + GH+AR+CE     CY CG+ GH+ ++C    K   +VCYNC    H+ +DC  +   E          H  +      +CY C + GH+A  C K S  E  CY C + GH+A+ C  
Sbjct:    1 MSSNECFGCGRTGHWIKNCPNAGRGRGK-----------------GRGRGKDLFCYRCGEPGHVARDCERTEDACYNCGRGGHISRDCKEPKKEREQVCYNCGKAGHMARDC--DHANEQKCYSCGGFGHIQK-GCEKVKCYRCGEIGHVAVQCSKAS--EVNCYNCGKSGHVAKECTI 157

HSP 2 Score: 60.8474 bits (146), Expect = 1.334e-10
Identity = 36/110 (32.73%), Postives = 53/110 (48.18%), Query Frame = 3

Query:  147 TCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCPVNET 476
             C+ CG  GHI+R+C   +   E +  N        R+  + N       CY C   GHI + CE     CY CG+ GH+  +C  +S+  CYNC  + H+ K+C +  T
Sbjct:   57 ACYNCGRGGHISRDCKEPKKEREQVCYNCGKAGHMARDCDHAN----EQKCYSCGGFGHIQKGCEK--VKCYRCGEIGHVAVQCSKASEVNCYNCGKSGHVAKECTIEAT 160

[Close]

Query:  135 LNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSK---KVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNCNF 662
            ++ + CF CG  GH  +NC N+                            K + CY+C + GH+AR+CE     CY CG+ GH+ ++C    K   +VCYNC    H+ +DC  +   E          H  +      +CY C + GH+A  C K S  E  CY C + GH+A+ C  
Sbjct:    1 MSSNECFGCGRTGHWIKNCPNAGRGRGK-----------------GRGRGKDLFCYRCGEPGHVARDCERTEDACYNCGRGGHISRDCKEPKKEREQVCYNCGKAGHMARDC--DHANEQKCYSCGGFGHIQK-GCEKVKCYRCGEIGHVAVQCSKAS--EVNCYNCGKSGHVAKECTI 157

HSP 2 Score: 60.8474 bits (146), Expect = 1.334e-10
Identity = 36/110 (32.73%), Postives = 53/110 (48.18%), Query Frame = 3

Query:  147 TCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCPVNET 476
             C+ CG  GHI+R+C   +   E +  N        R+  + N       CY C   GHI + CE     CY CG+ GH+  +C  +S+  CYNC  + H+ K+C +  T
Sbjct:   57 ACYNCGRGGHISRDCKEPKKEREQVCYNCGKAGHMARDCDHAN----EQKCYSCGGFGHIQKGCEK--VKCYRCGEIGHVAVQCSKASEVNCYNCGKSGHVAKECTIEAT 160

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BLAST of SMED30006417 vs. Ensembl Xenopus
Match: stk25 (serine/threonine kinase 25 [Source:Xenbase;Acc:XB-GENE-5860335])

HSP 1 Score: 55.4546 bits (132), Expect = 1.355e-7
Identity = 40/158 (25.32%), Postives = 64/158 (40.51%), Query Frame = 3

Query:  171 GHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAV--------------------CYGCGKEGHLFKECVSSS--KKVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCY--NCKDFGH 572
            G      + S+  SE+  GN+   R     + N+ + DK ++C  C+K GH+++NC     +                    C  C   GH FKEC+  +  +K C+ C+ T H    CP    + H++N           + + D  Y  NC   GH
Sbjct:  228 GERGAEWSISEKDSEAHIGNYTPLR-----RSNRYYTDKDVVCRNCDKRGHLSKNCPVPKKLPACCLCGERGHLQNSCPARYCLNCFLPGHFFKECIERAYWRKTCHRCSMTGHYADACPEIWRQYHLTNKAGPIKKPKSYTGQKDIVYCCNCAKKGH 380

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BLAST of SMED30006417 vs. Ensembl Xenopus
Match: ENSXETT00000025799.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:8:97559869:97663223:-1 gene:ENSXETG00000014121.1 transcript:ENSXETT00000025799.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 49.2914 bits (116), Expect = 1.659e-6
Identity = 33/132 (25.00%), Postives = 51/132 (38.64%), Query Frame = 3

Query:  246 VFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGH 641
            +  +++    + D    C +C +  HI ++C+     C  CG+ GH    C  S  K C  C + +HL KDCP                           C  C +FGHI ++C    +   +C  C   GH
Sbjct:    4 LIGKDREYLFYPDMPRFCRRCGRYDHIQQDCKDPRPQCKNCGEWGHTTVSCPKS--KTCSTCGAVDHLFKDCPY--------------------------CQRCNEFGHILQDC---ESGLRICANCLEFGH 104

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BLAST of SMED30006417 vs. Ensembl Mouse
Match: Cnbp (cellular nucleic acid binding protein [Source:MGI Symbol;Acc:MGI:88431])

HSP 1 Score: 96.2857 bits (238), Expect = 6.233e-23
Identity = 62/186 (33.33%), Postives = 89/186 (47.85%), Query Frame = 3

Query:  135 LNMSTCFKCGTIGHIARNCTNSQSYSESINGN----FVTGRVFVRNKRNQNFIDKSI--ICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSK---KVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNCNFN 665
            ++ + CFKCG  GH AR C         +       F + R F        F+  S+  ICY+C + GH+A++C+ +   CY CG+ GH+ K+C    +   + CYNC    HL +DC  +  +E          H  +   +  +CY C + GH+A NC K S  E  CYRC   GHLAR C   
Sbjct:    1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGF-------QFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC--DHADEQKCYSCGEFGHIQKDCTKV-KCYRCGETGHVAINCSKTS--EVNCYRCGESGHLARECTIE 174

HSP 2 Score: 56.225 bits (134), Expect = 6.422e-9
Identity = 34/114 (29.82%), Postives = 52/114 (45.61%), Query Frame = 3

Query:  135 LNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCPVNET 476
            L    C+ CG  GHIA++C   +   E    N        R+  + +       CY C + GHI ++C      CY CG+ GH+   C  +S+  CY C  + HL ++C +  T
Sbjct:   69 LQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHAD----EQKCYSCGEFGHIQKDCTK--VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEAT 176

[Close]

Query:  135 LNMSTCFKCGTIGHIARNCTNSQSYSESINGN----FVTGRVFVRNKRNQNFIDKSI--ICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSK---KVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNCNFN 665
            ++ + CFKCG  GH AR C         +       F + R F        F+  S+  ICY+C + GH+A++C+ +   CY CG+ GH+ K+C    +   + CYNC    HL +DC  +  +E          H  +   +  +CY C + GH+A NC K S  E  CYRC   GHLAR C   
Sbjct:    1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGF-------QFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC--DHADEQKCYSCGEFGHIQKDCTKV-KCYRCGETGHVAINCSKTS--EVNCYRCGESGHLARECTIE 174

HSP 2 Score: 56.225 bits (134), Expect = 6.422e-9
Identity = 34/114 (29.82%), Postives = 52/114 (45.61%), Query Frame = 3

Query:  135 LNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCPVNET 476
            L    C+ CG  GHIA++C   +   E    N        R+  + +       CY C + GHI ++C      CY CG+ GH+   C  +S+  CY C  + HL ++C +  T
Sbjct:   69 LQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHAD----EQKCYSCGEFGHIQKDCTK--VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEAT 176

[Close]

BLAST of SMED30006417 vs. Ensembl Mouse
Match: Cnbp (cellular nucleic acid binding protein [Source:MGI Symbol;Acc:MGI:88431])

HSP 1 Score: 94.3597 bits (233), Expect = 3.802e-22
Identity = 63/187 (33.69%), Postives = 89/187 (47.59%), Query Frame = 3

Query:  135 LNMSTCFKCGTIGHIARNCTNSQSYSESINGN----FVTGRVFVRNKRNQNFIDKSI--ICYKCNKVGHIARNCE-SESAVCYGCGKEGHLFKECVSSSK---KVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNCNFN 665
            ++ + CFKCG  GH AR C         +       F + R F        F+  S+  ICY+C + GH+A++C+  E   CY CG+ GH+ K+C    +   + CYNC    HL +DC  +  +E          H  +   +  +CY C + GH+A NC K S  E  CYRC   GHLAR C   
Sbjct:    1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGF-------QFVSSSLPDICYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC--DHADEQKCYSCGEFGHIQKDCTKV-KCYRCGETGHVAINCSKTS--EVNCYRCGESGHLARECTIE 175

HSP 2 Score: 54.6842 bits (130), Expect = 2.145e-8
Identity = 33/110 (30.00%), Postives = 51/110 (46.36%), Query Frame = 3

Query:  147 TCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCPVNET 476
             C+ CG  GHIA++C   +   E    N        R+  + +       CY C + GHI ++C      CY CG+ GH+   C  +S+  CY C  + HL ++C +  T
Sbjct:   74 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHAD----EQKCYSCGEFGHIQKDCTK--VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEAT 177

[Close]

BLAST of SMED30006417 vs. Ensembl Mouse
Match: Cnbp (cellular nucleic acid binding protein [Source:MGI Symbol;Acc:MGI:88431])

HSP 1 Score: 93.9745 bits (232), Expect = 3.927e-22
Identity = 61/180 (33.89%), Postives = 87/180 (48.33%), Query Frame = 3

Query:  135 LNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSK---KVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNCNFN 665
            ++ + CFKCG  GH AR C         +      G  FV    + +  D   ICY+C + GH+A++C+ +   CY CG+ GH+ K+C    +   + CYNC    HL +DC  +  +E          H  +   +  +CY C + GH+A NC K S  E  CYRC   GHLAR C   
Sbjct:    1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFQFV----SSSLPD---ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC--DHADEQKCYSCGEFGHIQKDCTKV-KCYRCGETGHVAINCSKTS--EVNCYRCGESGHLARECTIE 168

HSP 2 Score: 56.6102 bits (135), Expect = 5.512e-9
Identity = 34/114 (29.82%), Postives = 52/114 (45.61%), Query Frame = 3

Query:  135 LNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCPVNET 476
            L    C+ CG  GHIA++C   +   E    N        R+  + +       CY C + GHI ++C      CY CG+ GH+   C  +S+  CY C  + HL ++C +  T
Sbjct:   63 LQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHAD----EQKCYSCGEFGHIQKDCTK--VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEAT 170

[Close]

BLAST of SMED30006417 vs. Ensembl Mouse
Match: Zcchc13 (zinc finger, CCHC domain containing 13 [Source:MGI Symbol;Acc:MGI:1922314])

HSP 1 Score: 93.2041 bits (230), Expect = 7.806e-22
Identity = 60/180 (33.33%), Postives = 85/180 (47.22%), Query Frame = 3

Query:  135 LNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSK---KVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNCNFN 665
            ++  +CFKCG  GH AR C    +   +  G     +    N+        S +CY+C + GH A++C+     CY CG+ GH+ K+C  + +   + CY C+   HL +DC  N  EE          H  +      +CY C + GH+A NC K S  E  CYRC   GHLAR C   
Sbjct:    1 MSSKSCFKCGHSGHWARECPKGGTRGRTARGRTRGPQCSTANQ--------SDVCYRCGETGHYAKDCDLLQDTCYNCGRRGHIAKDCTQAKREREQCCYICSQPGHLARDC--NRQEEQKCYTCGEFGHIQK-DCTQIKCYRCGENGHMAVNCSKTS--EVSCYRCGESGHLARECPIE 167

HSP 2 Score: 64.3142 bits (155), Expect = 1.047e-11
Identity = 37/114 (32.46%), Postives = 55/114 (48.25%), Query Frame = 3

Query:  135 LNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCPVNET 476
            L   TC+ CG  GHIA++CT ++   E             R+   Q    +   CY C + GHI ++C      CY CG+ GH+   C  +S+  CY C  + HL ++CP+  T
Sbjct:   62 LLQDTCYNCGRRGHIAKDCTQAKREREQCCYICSQPGHLARDCNRQ----EEQKCYTCGEFGHIQKDCTQ--IKCYRCGENGHMAVNCSKTSEVSCYRCGESGHLARECPIEAT 169

[Close]

BLAST of SMED30006417 vs. UniProt/SwissProt
Match: sp|P62634|CNBP_RAT (Cellular nucleic acid-binding protein OS=Rattus norvegicus OX=10116 GN=Cnbp PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 4.360e-22
Identity = 62/186 (33.33%), Postives = 89/186 (47.85%), Query Frame = 3

Query:  135 LNMSTCFKCGTIGHIARNCTNSQSYSESINGN----FVTGRVFVRNKRNQNFIDKSI--ICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSK---KVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNCNFN 665
            ++ + CFKCG  GH AR C         +       F + R F        F+  S+  ICY+C + GH+A++C+ +   CY CG+ GH+ K+C    +   + CYNC    HL +DC  +  +E          H  +   +  +CY C + GH+A NC K S  E  CYRC   GHLAR C   
Sbjct:    1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGF-------QFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC--DHADEQKCYSCGEFGHIQKDCTKV-KCYRCGETGHVAINCSKTS--EVNCYRCGESGHLARECTIE 174

HSP 2 Score: 56.225 bits (134), Expect = 4.492e-8
Identity = 34/114 (29.82%), Postives = 52/114 (45.61%), Query Frame = 3

Query:  135 LNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCPVNET 476
            L    C+ CG  GHIA++C   +   E    N        R+  + +       CY C + GHI ++C      CY CG+ GH+   C  +S+  CY C  + HL ++C +  T
Sbjct:   69 LQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHAD----EQKCYSCGEFGHIQKDCTK--VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEAT 176

[Close]

BLAST of SMED30006417 vs. UniProt/SwissProt
Match: sp|Q5R5R5|CNBP_PONAB (Cellular nucleic acid-binding protein OS=Pongo abelii OX=9601 GN=CNBP PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 4.360e-22
Identity = 62/186 (33.33%), Postives = 89/186 (47.85%), Query Frame = 3

Query:  135 LNMSTCFKCGTIGHIARNCTNSQSYSESINGN----FVTGRVFVRNKRNQNFIDKSI--ICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSK---KVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNCNFN 665
            ++ + CFKCG  GH AR C         +       F + R F        F+  S+  ICY+C + GH+A++C+ +   CY CG+ GH+ K+C    +   + CYNC    HL +DC  +  +E          H  +   +  +CY C + GH+A NC K S  E  CYRC   GHLAR C   
Sbjct:    1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGF-------QFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC--DHADEQKCYSCGEFGHIQKDCTKV-KCYRCGETGHVAINCSKTS--EVNCYRCGESGHLARECTIE 174

HSP 2 Score: 56.225 bits (134), Expect = 4.492e-8
Identity = 34/114 (29.82%), Postives = 52/114 (45.61%), Query Frame = 3

Query:  135 LNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCPVNET 476
            L    C+ CG  GHIA++C   +   E    N        R+  + +       CY C + GHI ++C      CY CG+ GH+   C  +S+  CY C  + HL ++C +  T
Sbjct:   69 LQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHAD----EQKCYSCGEFGHIQKDCTK--VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEAT 176

[Close]

BLAST of SMED30006417 vs. UniProt/SwissProt
Match: sp|P62633|CNBP_HUMAN (Cellular nucleic acid-binding protein OS=Homo sapiens OX=9606 GN=CNBP PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 4.360e-22
Identity = 62/186 (33.33%), Postives = 89/186 (47.85%), Query Frame = 3

Query:  135 LNMSTCFKCGTIGHIARNCTNSQSYSESINGN----FVTGRVFVRNKRNQNFIDKSI--ICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSK---KVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNCNFN 665
            ++ + CFKCG  GH AR C         +       F + R F        F+  S+  ICY+C + GH+A++C+ +   CY CG+ GH+ K+C    +   + CYNC    HL +DC  +  +E          H  +   +  +CY C + GH+A NC K S  E  CYRC   GHLAR C   
Sbjct:    1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGF-------QFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC--DHADEQKCYSCGEFGHIQKDCTKV-KCYRCGETGHVAINCSKTS--EVNCYRCGESGHLARECTIE 174

HSP 2 Score: 56.225 bits (134), Expect = 4.492e-8
Identity = 34/114 (29.82%), Postives = 52/114 (45.61%), Query Frame = 3

Query:  135 LNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCPVNET 476
            L    C+ CG  GHIA++C   +   E    N        R+  + +       CY C + GHI ++C      CY CG+ GH+   C  +S+  CY C  + HL ++C +  T
Sbjct:   69 LQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHAD----EQKCYSCGEFGHIQKDCTK--VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEAT 176

[Close]

BLAST of SMED30006417 vs. UniProt/SwissProt
Match: sp|P53996|CNBP_MOUSE (Cellular nucleic acid-binding protein OS=Mus musculus OX=10090 GN=Cnbp PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 2.659e-21
Identity = 63/187 (33.69%), Postives = 89/187 (47.59%), Query Frame = 3

Query:  135 LNMSTCFKCGTIGHIARNCTNSQSYSESINGN----FVTGRVFVRNKRNQNFIDKSI--ICYKCNKVGHIARNCE-SESAVCYGCGKEGHLFKECVSSSK---KVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNCNFN 665
            ++ + CFKCG  GH AR C         +       F + R F        F+  S+  ICY+C + GH+A++C+  E   CY CG+ GH+ K+C    +   + CYNC    HL +DC  +  +E          H  +   +  +CY C + GH+A NC K S  E  CYRC   GHLAR C   
Sbjct:    1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGF-------QFVSSSLPDICYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC--DHADEQKCYSCGEFGHIQKDCTKV-KCYRCGETGHVAINCSKTS--EVNCYRCGESGHLARECTIE 175

HSP 2 Score: 54.6842 bits (130), Expect = 1.500e-7
Identity = 33/110 (30.00%), Postives = 51/110 (46.36%), Query Frame = 3

Query:  147 TCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCPVNET 476
             C+ CG  GHIA++C   +   E    N        R+  + +       CY C + GHI ++C      CY CG+ GH+   C  +S+  CY C  + HL ++C +  T
Sbjct:   74 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHAD----EQKCYSCGEFGHIQKDCTK--VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEAT 177

[Close]

BLAST of SMED30006417 vs. UniProt/SwissProt
Match: sp|Q3T0Q6|CNBP_BOVIN (Cellular nucleic acid-binding protein OS=Bos taurus OX=9913 GN=CNBP PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.192e-20
Identity = 60/182 (32.97%), Postives = 86/182 (47.25%), Query Frame = 3

Query:  135 LNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSI--ICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSK---KVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNCNFN 665
            ++ + CFKCG  GH AR C         +              R   F+  S+  ICY+C + GH+A++C+ +   CY CG+ GH+ K+C    +   + CYNC    HL +DC  +  +E          H  +   +  +CY C + GH+A NC K S  E  CYRC   GHLAR C   
Sbjct:    1 MSSNECFKCGRSGHWARECPTGGGRGRGMR----------SRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC--DHADEQKCYSCGEFGHIQKDCTKV-KCYRCGETGHVAINCSKTS--EVNCYRCGESGHLARECTIE 167

HSP 2 Score: 56.6102 bits (135), Expect = 3.787e-8
Identity = 34/114 (29.82%), Postives = 52/114 (45.61%), Query Frame = 3

Query:  135 LNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCPVNET 476
            L    C+ CG  GHIA++C   +   E    N        R+  + +       CY C + GHI ++C      CY CG+ GH+   C  +S+  CY C  + HL ++C +  T
Sbjct:   62 LQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHAD----EQKCYSCGEFGHIQKDCTK--VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEAT 169

[Close]

BLAST of SMED30006417 vs. TrEMBL
Match: A0A482WHT1 (Uncharacterized protein OS=Laodelphax striatellus OX=195883 GN=LSTR_LSTR005934 PE=4 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.284e-25
Identity = 65/175 (37.14%), Postives = 89/175 (50.86%), Query Frame = 3

Query:  135 LNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNCN 659
            ++ STC++C  IGH AR+C          N     G          +  DK   CYKCN+ GH AR C+ +   CY C   GH+ ++C  S +  CYNC+ + H+ +DCP                     SF N  CYNCK  GHIAR+CP+   K  VCY CN+PGH++R+C+
Sbjct:    1 MSSSTCYRCNRIGHFARDCRGGGGGPAGGNFRSGGGGGGGGPVSRYSGRDK---CYKCNRSGHFARECKEDHERCYRCNGVGHIARDCDMSDEPACYNCHKSGHIARDCPDFNQ-----------------SFNNTNCYNCKKSGHIARDCPEGQTK--VCYICNKPGHVSRDCD 153

[Close]

BLAST of SMED30006417 vs. TrEMBL
Match: A0A2A4K6G8 (Uncharacterized protein OS=Heliothis virescens OX=7102 GN=B5V51_1023 PE=4 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.659e-24
Identity = 63/179 (35.20%), Postives = 87/179 (48.60%), Query Frame = 3

Query:  126 FLILNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSKKV-CYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNCN 659
            FL ++ S C+KC   GH AR CT               G V  R+     F  +   C+KCN+ GH AR+C+ E+  CY C   GH+ +EC  S  +  CYNCN T H+ ++CP    +                   N  CYNC   GHI+RNCP  +     CY C +PGH++R+C+
Sbjct:    3 FLTMSSSVCYKCNRTGHFARECTQ--------------GGVAARD---SGFNRQREKCFKCNRAGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDSS-----------------NQTCYNCNKSGHISRNCPDGT---KTCYVCGKPGHISRDCD 144

[Close]

BLAST of SMED30006417 vs. TrEMBL
Match: A0A087T1Y2 (Cellular nucleic acid-binding protein (Fragment) OS=Stegodyphus mimosarum OX=407821 GN=X975_03205 PE=4 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.678e-24
Identity = 66/180 (36.67%), Postives = 90/180 (50.00%), Query Frame = 3

Query:  135 LNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSKKV-CYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRND-QCYNCKDFGHIARNCPKKSN----KESVCYRCNRPGHLARNC 656
            +N S C+KC   GH AR+CT S   S    G    G  +   + + +       CY C + GH AR C      CY CGK GH+ +EC +  +K+ CY C    H+ +DCP  + E                  R+D +CY C D GHI+R+CP+  N     ++VCYRCN  GH+ARNC
Sbjct:    1 MNSSECYKCHKTGHFARDCTLSDGRSGGYRGGRGGGGGYRGGRGSDSRSSPRASCYNCGRSGHFARECRESDKTCYTCGKSGHISRECDNEDRKITCYQCGKPGHVSRDCPGADRE------------------RDDRKCYTCGDTGHISRDCPEGGNSAEVDDTVCYRCNERGHIARNC 162

HSP 2 Score: 57.7658 bits (138), Expect = 4.495e-6
Identity = 36/118 (30.51%), Postives = 51/118 (43.22%), Query Frame = 3

Query:  147 TCFKCGTIGHIARNCTNSQS----YSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNC-------ESESAVCYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCPV 467
            TC+ CG  GHI+R C N       Y     G+          +R+         CY C   GHI+R+C       E +  VCY C + GH+ + C SS    CY C    H+ ++C +
Sbjct:   74 TCYTCGKSGHISRECDNEDRKITCYQCGKPGHVSRDCPGADRERDDR------KCYTCGDTGHISRDCPEGGNSAEVDDTVCYRCNERGHIARNCRSSRPSKCYQCGEVGHIARECEM 185

[Close]

BLAST of SMED30006417 vs. TrEMBL
Match: A0A1E1WT25 (Uncharacterized protein OS=Pectinophora gossypiella OX=13191 GN=g.3180 PE=4 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.272e-23
Identity = 59/176 (33.52%), Postives = 85/176 (48.30%), Query Frame = 3

Query:  135 LNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSKKV-CYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNCN 659
            ++ S C+KC   GH AR CT       ++              R+  F  +   C+KCN+ GH AR+C+ E+  CY C   GH+ +EC  S  +  CYNCN T H+ ++CP    +                   N  CYNC   GHI+RNCP  +     CY C +PGH++R+C+
Sbjct:    1 MSSSVCYKCNRTGHFARECTQGGGGGGAV--------------RDSGFGRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDSA-----------------NQTCYNCNKAGHISRNCPDGT---KTCYVCGKPGHISRDCD 142

HSP 2 Score: 63.5438 bits (153), Expect = 2.402e-8
Identity = 40/113 (35.40%), Postives = 51/113 (45.13%), Query Frame = 3

Query:  150 CFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNC-----ESESAVCYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCPVNE 473
            CFKC   GH AR+C          NG     R   ++            CY CNK GHIARNC     +S +  CY C K GH+ + C   +K  CY C    H+ +DC  +E
Sbjct:   41 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCPEGGRDSANQTCYNCNKAGHISRNCPDGTK-TCYVCGKPGHISRDCDESE 145

HSP 3 Score: 61.6178 bits (148), Expect = 1.135e-7
Identity = 35/88 (39.77%), Postives = 45/88 (51.14%), Query Frame = 3

Query:  150 CFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSK 413
            C++C   GHIAR C  S       N N  TG +  RN         +  CY CNK GHI+RNC   +  CY CGK GH+ ++C  S +
Sbjct:   61 CYRCNGTGHIARECAQSPDEPSCYNCN-KTGHI-ARNCPEGGRDSANQTCYNCNKAGHISRNCPDGTKTCYVCGKPGHISRDCDESER 146

[Close]

BLAST of SMED30006417 vs. TrEMBL
Match: A0A5E4R3L5 (Uncharacterized protein OS=Leptidea sinapis OX=189913 GN=LSINAPIS_LOCUS10045 PE=4 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.771e-23
Identity = 62/175 (35.43%), Postives = 83/175 (47.43%), Query Frame = 3

Query:  135 LNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSKKV-CYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNC 656
            ++ S C+KC   GH AR CT     S                 RN  F  +   C+KCN+ GH AR+C+ E+  CY C   GH+ +EC  S  +  CYNCN T H+ ++CP    E                   N  CYNC   GHI+RNCP  +     CY C +PGH++R+C
Sbjct:    1 MSSSVCYKCNRTGHFARECTQGGVAS-----------------RNPEFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESS-----------------NQTCYNCNKSGHISRNCPDGT---KTCYVCGKPGHISRDC 138

HSP 2 Score: 60.077 bits (144), Expect = 3.383e-7
Identity = 34/88 (38.64%), Postives = 45/88 (51.14%), Query Frame = 3

Query:  150 CFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSK 413
            C++C   GHIAR C  S       N N  TG +  RN         +  CY CNK GHI+RNC   +  CY CGK GH+ ++C  + +
Sbjct:   58 CYRCNGTGHIARECAQSPDEPSCYNCN-KTGHI-ARNCPEGGRESSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDCEEAER 143

[Close]

BLAST of SMED30006417 vs. Ensembl Cavefish
Match: ENSAMXT00000005562.2 (cellular nucleic acid-binding protein [Source:NCBI gene;Acc:103027392])

HSP 1 Score: 87.4261 bits (215), Expect = 5.329e-20
Identity = 55/179 (30.73%), Postives = 79/179 (44.13%), Query Frame = 3

Query:  135 LNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSK---KVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNCNF 662
            ++ + CF CG  GH  +NC N+                            K + CY+C + GH+AR+CE     CY CG+ GH+ ++C    K   +VCYNC    H+ +DC  +   E          H  +      +CY C + GH+A  C K S  E  CY C + GHLA+ C  
Sbjct:    1 MSSNECFGCGRTGHWIKNCPNAGRGRGK-----------------GRGRGKDLFCYRCGEPGHVARDCERTEDACYNCGRGGHISRDCKEPKKEREQVCYNCGKAGHVARDC--DHANEQKCYSCGGFGHIQK-GCEKVKCYRCGEIGHVAVQCSKAS--EVNCYNCGKSGHLAKECTI 157

HSP 2 Score: 62.7734 bits (151), Expect = 2.651e-11
Identity = 40/130 (30.77%), Postives = 60/130 (46.15%), Query Frame = 3

Query:  150 CFKCGTIGHIARNC--TNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCES-------------------ESAVCYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCPVNET 476
            C++CG  GH+AR+C  T    Y+    G+        + +R Q       +CY C K GH+AR+C+                    E   CY CG+ GH+  +C  +S+  CYNC  + HL K+C +  T
Sbjct:   38 CYRCGEPGHVARDCERTEDACYNCGRGGHISRDCKEPKKEREQ-------VCYNCGKAGHVARDCDHANEQKCYSCGGFGHIQKGCEKVKCYRCGEIGHVAVQCSKASEVNCYNCGKSGHLAKECTIEAT 160

[Close]

BLAST of SMED30006417 vs. Ensembl Cavefish
Match: cnbpa (cellular nucleic acid-binding protein-like [Source:NCBI gene;Acc:103024401])

HSP 1 Score: 83.5741 bits (205), Expect = 1.832e-18
Identity = 57/190 (30.00%), Postives = 81/190 (42.63%), Query Frame = 3

Query:  129 LILNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESE---------SAVCYGCGKEGHLFKECVSSSK---KVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNCNF 662
            + ++ S CF CG  GH  +NC N+                            K + CY+C + GHIAR+CE           S  CY C + GH+ ++C    K   + CYNC    H+ +DC  +   E          H  ++  +  +CY C + GH+A  C K S  E  CY C + GHLAR C  
Sbjct:    1 MDMSSSECFGCGRSGHWVKNCPNAGRGRGR-----------------GRGRGKDLFCYRCGEQGHIARDCEQTEDGEALSPFSQTCYNCHRSGHISRDCKEPKKEREQCCYNCGKAGHVARDC--DHANEQKCYSCGGFGHIQKLCDKV-KCYRCGEIGHVAVQCSKAS--EVNCYNCGKTGHLARECTI 168

[Close]

BLAST of SMED30006417 vs. Ensembl Cavefish
Match: ENSAMXT00000049641.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02002305.1:133096:141172:1 gene:ENSAMXG00000031265.1 transcript:ENSAMXT00000049641.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 53.9138 bits (128), Expect = 2.350e-8
Identity = 39/117 (33.33%), Postives = 57/117 (48.72%), Query Frame = 3

Query:  291 IICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGH 641
            I C+KC ++GH  + C++ + VC  CG +GH + +C S +++ CY C+STEH VKDC V                         +C+ C + GH  + C    N E VC  C   GH
Sbjct:   47 IKCWKCGELGHRGKECQN-TEVCNLCGTQGHSYFKCPSQTQR-CYVCHSTEHQVKDCDV------------------------IKCWKCGELGHRGKEC---QNTE-VCNLCGTQGH 133

[Close]

BLAST of SMED30006417 vs. Ensembl Cavefish
Match: ENSAMXT00000047897.1 (pep primary_assembly:Astyanax_mexicanus-2.0:15:10959414:10969971:-1 gene:ENSAMXG00000029509.1 transcript:ENSAMXT00000047897.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 48.521 bits (114), Expect = 2.041e-6
Identity = 35/95 (36.84%), Postives = 42/95 (44.21%), Query Frame = 3

Query:  132 ILNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNC-ESESAVCYGCGKEGHLFKECVSSSK 413
              + S C+KCG  GHI R            N N V+GR   R+K       +S  CYKC   GHI R C  S++  C  CGK GH    C    K
Sbjct:   39 APSQSGCYKCGAQGHIGRE----------SNTNHVSGR--ARSKPKPKAPSQS-GCYKCGAQGHIGRECIRSKNHKCSHCGKRGHFDDLCFHKDK 120

[Close]

BLAST of SMED30006417 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000003739.1 (pep scaffold:Pmarinus_7.0:GL499243:411:1384:-1 gene:ENSPMAG00000003418.1 transcript:ENSPMAT00000003739.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 67.781 bits (164), Expect = 4.344e-14
Identity = 43/160 (26.88%), Postives = 62/160 (38.75%), Query Frame = 3

Query:  135 LNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSK-----KVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKS 599
            ++ + CF+CG  GH AR C N                        +    +   CY+C + GHIAR C      CY CGK GH+ +EC    +       CY C    HL ++C                  +      +++CY C   GH+ R+C K S
Sbjct:    1 MSSNECFRCGGSGHWARECPNGAGGGRGPG-----------GPVGRGGRGRGDGCYRCGEGGHIARECPLPQDTCYNCGKGGHIARECPEGRQDRGGGPSCYTCGKQGHLAREC-----------------SSGGGGPGDNKCYGCGQRGHMQRDCTKAS 132

HSP 2 Score: 57.3806 bits (137), Expect = 2.033e-10
Identity = 37/140 (26.43%), Postives = 53/140 (37.86%), Query Frame = 3

Query:  297 CYKCNKVGHIARNCE------------------SESAVCYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNK--ESVCYRCNRPGHLARNC 656
            C++C   GH AR C                        CY CG+ GH+ +EC    +  CYNC    H+ ++CP    +                      CY C   GH+AR C        ++ CY C + GH+ R+C
Sbjct:    6 CFRCGGSGHWARECPNGAGGGRGPGGPVGRGGRGRGDGCYRCGEGGHIAREC-PLPQDTCYNCGKGGHIARECPEGRQDRGG----------------GPSCYTCGKQGHLARECSSGGGGPGDNKCYGCGQRGHMQRDC 128

HSP 3 Score: 54.6842 bits (130), Expect = 1.532e-9
Identity = 30/93 (32.26%), Postives = 44/93 (47.31%), Query Frame = 3

Query:  150 CFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAV-----CYGCGKEGHLFKECVSSSK 413
            C++CG  GHIAR C   Q    +        R     ++++        CY C K GH+AR C S         CYGCG+ GH+ ++C  +S+
Sbjct:   44 CYRCGEGGHIARECPLPQDTCYNCGKGGHIARECPEGRQDRG---GGPSCYTCGKQGHLARECSSGGGGPGDNKCYGCGQRGHMQRDCTKASR 133

HSP 4 Score: 52.7582 bits (125), Expect = 6.978e-9
Identity = 34/121 (28.10%), Postives = 44/121 (36.36%), Query Frame = 3

Query:  357 CYGCGKEGHLFKECV-----------------SSSKKVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKES---VCYRCNRPGHLARNCN 659
            C+ CG  GH  +EC                        CY C    H+ ++CP+ +                      D CYNC   GHIAR CP+          CY C + GHLAR C+
Sbjct:    6 CFRCGGSGHWARECPNGAGGGRGPGGPVGRGGRGRGDGCYRCGEGGHIARECPLPQ----------------------DTCYNCGKGGHIARECPEGRQDRGGGPSCYTCGKQGHLARECS 104

[Close]

BLAST of SMED30006417 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000010393.1 (pep scaffold:Pmarinus_7.0:GL485791:8073:10868:-1 gene:ENSPMAG00000009411.1 transcript:ENSPMAT00000010393.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 59.6918 bits (143), Expect = 1.803e-11
Identity = 37/134 (27.61%), Postives = 55/134 (41.04%), Query Frame = 3

Query:  261 KRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSN--KESVCYRCNRPGHLARNC 656
            +  ++F D    CY+C + GHIAR C               L ++ VSS+   CYNC    H+ ++CP    +                      CY C   GH+AR C        ++ CY C + GH+ R+C
Sbjct:    1 RGGKSFTDG---CYRCGEGGHIARECP--------------LPQDSVSSNTAACYNCGKGGHIARECPEGRQDRGG----------------GPSCYTCGKQGHLARECSSGGGGPGDNKCYGCGQRGHMQRDC 101

HSP 2 Score: 54.6842 bits (130), Expect = 9.096e-10
Identity = 32/100 (32.00%), Postives = 46/100 (46.00%), Query Frame = 3

Query:  150 CFKCGTIGHIARNCTNSQSYSESINGNFVT-------GRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAV-----CYGCGKEGHLFKECVSSSK 413
            C++CG  GHIAR C   Q   +S++ N          G +       +        CY C K GH+AR C S         CYGCG+ GH+ ++C  +S+
Sbjct:   10 CYRCGEGGHIARECPLPQ---DSVSSNTAACYNCGKGGHIARECPEGRQDRGGGPSCYTCGKQGHLARECSSGGGGPGDNKCYGCGQRGHMQRDCTKASR 106

HSP 3 Score: 54.6842 bits (130), Expect = 9.096e-10
Identity = 29/83 (34.94%), Postives = 37/83 (44.58%), Query Frame = 3

Query:  420 CYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKES---VCYRCNRPGHLARNCN 659
            CY C    H+ ++CP+ +               D VS     CYNC   GHIAR CP+          CY C + GHLAR C+
Sbjct:   10 CYRCGEGGHIARECPLPQ---------------DSVSSNTAACYNCGKGGHIARECPEGRQDRGGGPSCYTCGKQGHLARECS 77

[Close]

BLAST of SMED30006417 vs. Ensembl Yeast
Match: GIS2 (Translational activator for mRNAs with internal ribosome entry sites; associates with polysomes and binds to a specific subset of mRNAs; localizes to RNA processing bodies (P bodies) and to stress granules; may have a role in translation regulation under stress conditions; ortholog of human ZNF9/CNBP, a gene involved in myotonic dystrophy type 2 [Source:SGD;Acc:S000005199])

HSP 1 Score: 77.411 bits (189), Expect = 1.906e-17
Identity = 51/187 (27.27%), Postives = 80/187 (42.78%), Query Frame = 3

Query:  135 LNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAV----CYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCPVNETEEHISNY----VDATSHTDEVSFRND-----QCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNC 656
            ++   C+ CG IGH+A +C                              D   +CY CNK GH+  +C     V    CY CG+ GH+  EC     + C+NCN T H+ ++CP  +     S          +H  +   + D     +CY C   GH++R+C      + +CY CN  GH++++C
Sbjct:    1 MSQKACYVCGKIGHLAEDC------------------------------DSERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECTV---QRCFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMKEDGISGLKCYTCGQAGHMSRDC----QNDRLCYNCNETGHISKDC 150

HSP 2 Score: 67.0106 bits (162), Expect = 8.606e-14
Identity = 37/115 (32.17%), Postives = 59/115 (51.30%), Query Frame = 3

Query:  132 ILNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAV----CYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCP 464
             +    C+ CG  GH+   CT  + ++ +  G+    R     K+   F    + CYKC    H+A++C  E  +    CY CG+ GH+ ++C   + ++CYNCN T H+ KDCP
Sbjct:   43 TVEFKQCYNCGETGHVRSECTVQRCFNCNQTGHI--SRECPEPKKTSRF--SKVSCYKCGGPNHMAKDCMKEDGISGLKCYTCGQAGHMSRDC--QNDRLCYNCNETGHISKDCP 151

[Close]

BLAST of SMED30006417 vs. Ensembl Nematostella
Match: EDO27708 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T8H9])

HSP 1 Score: 65.4698 bits (158), Expect = 2.089e-11
Identity = 42/137 (30.66%), Postives = 59/137 (43.07%), Query Frame = 3

Query:  297 CYKCNKVGHIARNCE----SESAVCYGCGKEGHLFKEC--VSSSKKVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCP-----------KKSNKESVCYRCNRPGHLARNC 656
            C KC + GH AR+C       S  C+ C +EGH  +EC    S    C+ CN + H  ++CP N           ++  T         CY C + GH AR CP              + +S C++C + GH AR C
Sbjct:   36 CRKCGESGHFARDCPQGGGGGSRTCHKCNEEGHFARECPNADSGGNKCFKCNESGHFARECP-NSGGGGGGFGGGSSGST---------CYKCNETGHFARECPNAESNGGGFGGGGGSSDSTCFKCQQTGHFAREC 162

HSP 2 Score: 60.4622 bits (145), Expect = 8.928e-10
Identity = 48/164 (29.27%), Postives = 63/164 (38.41%), Query Frame = 3

Query:  150 CFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNC---ESESAVCYGCGKEGHLFKEC-----------VSSSKKVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKS 599
            C KCG  GH AR+C                          Q     S  C+KCN+ GH AR C   +S    C+ C + GH  +EC             SS   CY CN T H  ++CP  E+          +S        +  C+ C+  GH AR CP +S
Sbjct:   36 CRKCGESGHFARDCP-------------------------QGGGGGSRTCHKCNEEGHFARECPNADSGGNKCFKCNESGHFARECPNSGGGGGGFGGGSSGSTCYKCNETGHFARECPNAESNGGGFGGGGGSS--------DSTCFKCQQTGHFARECPNES 166

[Close]

BLAST of SMED30006417 vs. Ensembl Nematostella
Match: EDO36176 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SJG4])

HSP 1 Score: 55.0694 bits (131), Expect = 2.138e-9
Identity = 37/148 (25.00%), Postives = 56/148 (37.84%), Query Frame = 3

Query:   93 FTADYLREIL*FLILNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAV-------------------CYGCGKEGHLFKEC----VSSSKKVCYNCNSTEHLVKDCPV 467
            F  ++L  +L         C +CG  GH +R C N  +  E I             KR    +     C+KC K GH +R C ++ +                    C+ CG+EGH  +EC    +      C+ C  T H  ++CP 
Sbjct:    3 FVPEFLPYVLPGGGGGGGDCHQCGEAGHFSRECPNKGNQGEPI-------------KR----MGGGGACHKCGKEGHFSRECPNQDSQRMNIQYLCQTHFSISGGRNCHKCGQEGHFSRECPNQAIQGQSDTCHKCGETGHYSRECPT 133

HSP 2 Score: 50.0618 bits (118), Expect = 1.365e-7
Identity = 32/122 (26.23%), Postives = 54/122 (44.26%), Query Frame = 3

Query:  297 CYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKS--NKESVCYRCNRPGHLARNC 656
            C++C + GH +R C ++       G +G   K         C+ C    H  ++CP  +++     Y+  T H      RN  C+ C   GH +R CP ++   +   C++C   GH +R C
Sbjct:   22 CHQCGEAGHFSRECPNK-------GNQGEPIKR--MGGGGACHKCGKEGHFSRECPNQDSQRMNIQYLCQT-HFSISGGRN--CHKCGQEGHFSRECPNQAIQGQSDTCHKCGETGHYSREC 131

[Close]

BLAST of SMED30006417 vs. Ensembl Nematostella
Match: EDO28813 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T5E8])

HSP 1 Score: 49.6766 bits (117), Expect = 9.285e-8
Identity = 36/122 (29.51%), Postives = 51/122 (41.80%), Query Frame = 3

Query:  150 CFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCE----SES----AVCYGCGKEGHLFKECVSSSKKV------CYNCNSTEHLVKDCPVNE 473
            CF C  +GH A +C  ++  S  +                        +CYKC    HI ++C+    +ES    A C+ CG+ GHL   C  + K +      C  C S EHL +DCP  E
Sbjct:    1 CFHCRELGHRAADCPQTKKTSAGVG-----------------------VCYKCRATSHITKHCKVTTTTESPFPFAKCFICGETGHLSSSCPDNPKGLYPEGGGCKECGSVEHLRRDCPELE 99

[Close]

BLAST of SMED30006417 vs. Ensembl Nematostella
Match: EDO45618 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RSD8])

HSP 1 Score: 48.521 bits (114), Expect = 2.227e-7
Identity = 36/121 (29.75%), Postives = 50/121 (41.32%), Query Frame = 3

Query:  153 FKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCE----SES----AVCYGCGKEGHLFKECVSSSKKV------CYNCNSTEHLVKDCPVNE 473
            F C  +GH A +C  ++  S  +                        +CYKC    HI ++C+    SES    A C+ CG+ GHL   C  + K +      C  C S EHL +DCP  E
Sbjct:    2 FHCRELGHRAADCPQTKKTSAGVG-----------------------VCYKCGATSHITKHCKVTTTSESPFPFAKCFICGETGHLSSSCPDNPKGLYPEGGGCKECGSVEHLRRDCPELE 99

[Close]

BLAST of SMED30006417 vs. Ensembl Medaka
Match: cnbpa (CCHC-type zinc finger nucleic acid binding protein [Source:NCBI gene;Acc:101173222])

HSP 1 Score: 84.3445 bits (207), Expect = 8.361e-19
Identity = 52/176 (29.55%), Postives = 80/176 (45.45%), Query Frame = 3

Query:  144 STCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSK---KVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNCNF 662
            S CF CG  GH  ++C N+                  R +       K + CY+C   GH+AR+C+     CY C + GH+ ++C    K   ++CY C    H+ +DC  +   E          H  ++  +  +CY C + GH+A +C K S  E+ CY C + GHLA+ C  
Sbjct:    7 SECFGCGRPGHWVKHCPNASG---------------TRGRGRGRGRGKELFCYRCGDQGHMARDCDQTEDACYNCHRSGHISRDCKEPKKEREQLCYTCGKAGHMARDC--DHANEQKCYSCGGFGHIQKLCDKV-KCYRCGEIGHVAVHCSKAS--ETNCYNCGKAGHLAKECTI 162

HSP 2 Score: 62.3882 bits (150), Expect = 3.851e-11
Identity = 39/121 (32.23%), Postives = 56/121 (46.28%), Query Frame = 3

Query:  342 SESAVCYGCGKEGHLFKECVSSS-------------KKVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNC--PKKSNKESVCYRCNRPGHLARNCN 659
            S ++ C+GCG+ GH  K C ++S             +  CY C    H+ +DC   E                      D CYNC   GHI+R+C  PKK  +E +CY C + GH+AR+C+
Sbjct:    4 SSNSECFGCGRPGHWVKHCPNASGTRGRGRGRGRGKELFCYRCGDQGHMARDCDQTE----------------------DACYNCHRSGHISRDCKEPKK-EREQLCYTCGKAGHMARDCD 101

HSP 3 Score: 60.077 bits (144), Expect = 2.183e-10
Identity = 36/128 (28.12%), Postives = 59/128 (46.09%), Query Frame = 3

Query:  150 CFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCES-------------------ESAVCYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCPVNET 476
            C++CG  GH+AR+C  ++    + + +    R     K+     ++  +CY C K GH+AR+C+                    +   CY CG+ GH+   C  +S+  CYNC    HL K+C +  T
Sbjct:   43 CYRCGDQGHMARDCDQTEDACYNCHRSGHISRDCKEPKK-----EREQLCYTCGKAGHMARDCDHANEQKCYSCGGFGHIQKLCDKVKCYRCGEIGHVAVHCSKASETNCYNCGKAGHLAKECTIEAT 165

[Close]

BLAST of SMED30006417 vs. Ensembl Medaka
Match: cnbpa (CCHC-type zinc finger nucleic acid binding protein [Source:NCBI gene;Acc:101173222])

HSP 1 Score: 73.559 bits (179), Expect = 2.346e-15
Identity = 56/177 (31.64%), Postives = 83/177 (46.89%), Query Frame = 3

Query:  144 STCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCES----ESAVCYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNCNF 662
            S CF CG  GH  ++C N+       +G    GR   R K           CY C++ GHI+R+C+        +CY CGK GH+ ++C  ++++ CY+C    H+ K C                   D+V     +CY C + GH+A +C K S  E+ CY C + GHLA+ C  
Sbjct:    7 SECFGCGRPGHWVKHCPNA-------SGTRGRGRGRGRGK----------ACYNCHRSGHISRDCKEPKKEREQLCYTCGKAGHMARDCDHANEQKCYSCGGFGHIQKLC-------------------DKV-----KCYRCGEIGHVAVHCSKAS--ETNCYNCGKAGHLAKECTI 140

HSP 2 Score: 60.8474 bits (146), Expect = 6.483e-11
Identity = 41/120 (34.17%), Postives = 59/120 (49.17%), Query Frame = 3

Query:  342 SESAVCYGCGKEGHLFKECVSSS-----------KKVCYNCNSTEHLVKDC--PVNETEEHISNYVDATSHTDEVSFRNDQ-CYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNCN 659
            S ++ C+GCG+ GH  K C ++S            K CYNC+ + H+ +DC  P  E E+       A     +    N+Q CY+C  FGHI + C K       CYRC   GH+A +C+
Sbjct:    4 SSNSECFGCGRPGHWVKHCPNASGTRGRGRGRGRGKACYNCHRSGHISRDCKEPKKEREQLCYTCGKAGHMARDCDHANEQKCYSCGGFGHIQKLCDKVK-----CYRCGEIGHVAVHCS 118

[Close]

BLAST of SMED30006417 vs. Ensembl Medaka
Match: ENSORLT00000032413.1 (zinc finger CCHC-type containing 7 [Source:NCBI gene;Acc:101170154])

HSP 1 Score: 53.5286 bits (127), Expect = 2.786e-7
Identity = 38/120 (31.67%), Postives = 52/120 (43.33%), Query Frame = 3

Query:  237 TGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNC-ESESAVCYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPK 593
            T R F++N+    +  K+I C  CNK GH+++NC E +   C+ CG  GHL  EC +   K C NC    HL   C                    E  +   QC+ C   GH    CP+
Sbjct:  209 TTRQFLQNRY---YTGKNIHCKNCNKTGHLSKNCPEPKLVPCFLCGAPGHLVIECPN---KHCNNCGHPGHLFNSC-------------------SEKPYWYKQCHRCSMKGHFLDACPE 303

[Close]

BLAST of SMED30006417 vs. Planmine SMEST
Match: SMESG000020671.1 (SMESG000020671.1)

HSP 1 Score: 353.984 bits (907), Expect = 3.151e-122
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 3

Query:  141 MSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNCNFN 665
            MSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNCNFN
Sbjct:    1 MSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNCNFN 175

[Close]

BLAST of SMED30006417 vs. Planmine SMEST
Match: SMESG000008610.1 (SMESG000008610.1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.524e-19
Identity = 62/191 (32.46%), Postives = 89/191 (46.60%), Query Frame = 3

Query:  141 MSTCFKCGTIGHIARNCTNSQ----SYSESINGNFVTG---RVFVRNKRNQNFIDKSIICYKCNKVGHIARNCES--ESAVCYGCGKEGHLFKECVSSSKKVCYNCNSTEHLVKDCPVNETEE----------HISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNC 656
            M+ C+KCG +G   R+C+N       Y  S  G +  G   R   R +   N       CY+C + GHIA++C S      CY CG   HL K+C     K CY CN   HL ++C     ++          H++   +  S+ +  S R+  CY C + GH AR+CP   N   +C+ C   GH+AR C
Sbjct:    1 MTECYKCGEVGCYGRDCSNGDERGYGYRNSNRGIYSRGGRPRSTQRGRGRGNVRLGRKSCYQCGREGHIAKDCGSGDNQNGCYNCGGTDHLQKDCPEVIVKTCYRCNCKGHLARNCTSTIEDDRSCYKCNKKGHLARDCN-NSYGNGSSNRHFVCYKCNEPGHYARDCP---NDSIICHNCQEVGHMAREC 187

HSP 2 Score: 70.0922 bits (170), Expect = 8.196e-14
Identity = 53/163 (32.52%), Postives = 77/163 (47.24%), Query Frame = 3

Query:  129 LILNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCES---ESAVCYGCGKEGHLFKECVSSSKK-------VCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNC 587
            + L   +C++CG  GHIA++C +     ++ NG +  G      K     I K+  CY+CN  GH+ARNC S   +   CY C K+GHL ++C +S          VCY CN   H  +DCP                  D +      C+NC++ GH+AR C
Sbjct:   53 VRLGRKSCYQCGREGHIAKDCGS----GDNQNGCYNCGGTDHLQKDCPEVIVKT--CYRCNCKGHLARNCTSTIEDDRSCYKCNKKGHLARDCNNSYGNGSSNRHFVCYKCNEPGHYARDCP-----------------NDSII-----CHNCQEVGHMAREC 187

HSP 3 Score: 56.6102 bits (135), Expect = 3.530e-9
Identity = 33/90 (36.67%), Postives = 49/90 (54.44%), Query Frame = 3

Query:  132 ILNMSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECV 401
            I +  +C+KC   GH+AR+C NS        GN  + R FV              CYKCN+ GH AR+C ++S +C+ C + GH+ +EC+
Sbjct:  120 IEDDRSCYKCNKKGHLARDCNNSY-------GNGSSNRHFV--------------CYKCNEPGHYARDCPNDSIICHNCQEVGHMARECL 188

[Close]

BLAST of SMED30006417 vs. Planmine SMEST
Match: SMESG000059266.1 (SMESG000059266.1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.393e-18
Identity = 58/192 (30.21%), Postives = 89/192 (46.35%), Query Frame = 3

Query:  150 CFKCGTIGHIARNCTNSQSYSESINGNF-----VTGRV------FVRNKRNQNFIDKSIICYKCNKVGHIARNCESESA--------VCYGCGKEGHLFKECV---SSSKKV-CYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNC 656
            C+ CG  GH+AR+CT  +    +   N      + G +        R   N+     S+ CY C + GH++++C  +           CY CG+ GH+ + C    S  +++ CY CN   H+ +DC                 + D  + R  +CYNC   GH++R CP   + E  CY+CN PGHLAR+C
Sbjct:   10 CYNCGKDGHMARDCTEYKKSGSNQRTNACFNCGLNGHISKECPDNRRGGGNRRGGRSSVTCYNCGEAGHVSKDCSDQGYRDNAPRGNTCYKCGEAGHISRNCTQNWSGDRQMKCYKCNQLGHMSRDC-----------------NEDGGNDRQIKCYNCHQNGHMSRECPNGPS-EKKCYKCNNPGHLARDC 183

HSP 2 Score: 72.7886 bits (177), Expect = 8.332e-15
Identity = 47/149 (31.54%), Postives = 69/149 (46.31%), Query Frame = 3

Query:  276 FIDKSIICYKCNKVGHIARNC--------ESESAVCYGCGKEGHLFKECVSS-----------SKKVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPK--KSNKESVCYRCNRPGHLARNCN 659
            +  + + CY C K GH+AR+C           +  C+ CG  GH+ KEC  +           S   CYNC    H+ KDC           Y D          R + CY C + GHI+RNC +    +++  CY+CN+ GH++R+CN
Sbjct:    3 YNQRKLDCYNCGKDGHMARDCTEYKKSGSNQRTNACFNCGLNGHISKECPDNRRGGGNRRGGRSSVTCYNCGEAGHVSKDCS-------DQGYRDNAP-------RGNTCYKCGEAGHISRNCTQNWSGDRQMKCYKCNQLGHMSRDCN 137

HSP 3 Score: 71.2478 bits (173), Expect = 2.904e-14
Identity = 40/111 (36.04%), Postives = 58/111 (52.25%), Query Frame = 3

Query:  147 TCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESA-----VCYGCGKEGHLFKECVSS-SKKVCYNCNSTEHLVKDC 461
            TC+KCG  GHI+RNCT + S                         D+ + CYKCN++GH++R+C  +        CY C + GH+ +EC +  S+K CY CN+  HL +DC
Sbjct:   97 TCYKCGEAGHISRNCTQNWS------------------------GDRQMKCYKCNQLGHMSRDCNEDGGNDRQIKCYNCHQNGHMSRECPNGPSEKKCYKCNNPGHLARDC 183

HSP 4 Score: 56.6102 bits (135), Expect = 3.697e-9
Identity = 33/115 (28.70%), Postives = 54/115 (46.96%), Query Frame = 3

Query:  357 CYGCGKEGHLFKECVSSSKK-------VCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESV-----CYRCNRPGHLARNCNFN 665
            CY CGK+GH+ ++C    K         C+NC    H+ K+CP N           ++            CYNC + GH++++C  +  +++      CY+C   GH++RNC  N
Sbjct:   10 CYNCGKDGHMARDCTEYKKSGSNQRTNACFNCGLNGHISKECPDNRRGGGNRRGGRSSV----------TCYNCGEAGHVSKDCSDQGYRDNAPRGNTCYKCGEAGHISRNCTQN 114

[Close]

BLAST of SMED30006417 vs. Planmine SMEST
Match: SMESG000059254.1 (SMESG000059254.1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.393e-18
Identity = 58/192 (30.21%), Postives = 89/192 (46.35%), Query Frame = 3

Query:  150 CFKCGTIGHIARNCTNSQSYSESINGNF-----VTGRV------FVRNKRNQNFIDKSIICYKCNKVGHIARNCESESA--------VCYGCGKEGHLFKECV---SSSKKV-CYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNC 656
            C+ CG  GH+AR+CT  +    +   N      + G +        R   N+     S+ CY C + GH++++C  +           CY CG+ GH+ + C    S  +++ CY CN   H+ +DC                 + D  + R  +CYNC   GH++R CP   + E  CY+CN PGHLAR+C
Sbjct:   10 CYNCGKDGHMARDCTEYKKSGSNQRTNACFNCGLNGHISKECPDNRRGGGNRRGGRSSVTCYNCGEAGHVSKDCSDQGYRDNAPRGNTCYKCGEAGHISRNCTQNWSGDRQMKCYKCNQLGHMSRDC-----------------NEDGGNDRQIKCYNCHQNGHMSRECPNGPS-EKKCYKCNNPGHLARDC 183

HSP 2 Score: 72.7886 bits (177), Expect = 8.332e-15
Identity = 47/149 (31.54%), Postives = 69/149 (46.31%), Query Frame = 3

Query:  276 FIDKSIICYKCNKVGHIARNC--------ESESAVCYGCGKEGHLFKECVSS-----------SKKVCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPK--KSNKESVCYRCNRPGHLARNCN 659
            +  + + CY C K GH+AR+C           +  C+ CG  GH+ KEC  +           S   CYNC    H+ KDC           Y D          R + CY C + GHI+RNC +    +++  CY+CN+ GH++R+CN
Sbjct:    3 YNQRKLDCYNCGKDGHMARDCTEYKKSGSNQRTNACFNCGLNGHISKECPDNRRGGGNRRGGRSSVTCYNCGEAGHVSKDCS-------DQGYRDNAP-------RGNTCYKCGEAGHISRNCTQNWSGDRQMKCYKCNQLGHMSRDCN 137

HSP 3 Score: 71.2478 bits (173), Expect = 2.904e-14
Identity = 40/111 (36.04%), Postives = 58/111 (52.25%), Query Frame = 3

Query:  147 TCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESESA-----VCYGCGKEGHLFKECVSS-SKKVCYNCNSTEHLVKDC 461
            TC+KCG  GHI+RNCT + S                         D+ + CYKCN++GH++R+C  +        CY C + GH+ +EC +  S+K CY CN+  HL +DC
Sbjct:   97 TCYKCGEAGHISRNCTQNWS------------------------GDRQMKCYKCNQLGHMSRDCNEDGGNDRQIKCYNCHQNGHMSRECPNGPSEKKCYKCNNPGHLARDC 183

HSP 4 Score: 56.6102 bits (135), Expect = 3.697e-9
Identity = 33/115 (28.70%), Postives = 54/115 (46.96%), Query Frame = 3

Query:  357 CYGCGKEGHLFKECVSSSKK-------VCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCPKKSNKESV-----CYRCNRPGHLARNCNFN 665
            CY CGK+GH+ ++C    K         C+NC    H+ K+CP N           ++            CYNC + GH++++C  +  +++      CY+C   GH++RNC  N
Sbjct:   10 CYNCGKDGHMARDCTEYKKSGSNQRTNACFNCGLNGHISKECPDNRRGGGNRRGGRSSV----------TCYNCGEAGHVSKDCSDQGYRDNAPRGNTCYKCGEAGHISRNCTQN 114

[Close]

BLAST of SMED30006417 vs. Planmine SMEST
Match: SMESG000059283.1 (SMESG000059283.1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.003e-15
Identity = 39/117 (33.33%), Postives = 60/117 (51.28%), Query Frame = 3

Query:  342 SESAVCYGCGKEGHLFKECVSSSKK-------VCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVS-FRNDQCYNCKDFGHIARNCPKKSN---KESVCYRCNRPGHLARNCN 659
            S    CY CGK+GH+ ++C  S K         C+NC  + H+ ++CP N +              D     R  +CYNC + GH++R CPK+ +   + + CY+C   GH+AR+CN
Sbjct:    3 SRRMECYNCGKDGHMSRDCTESKKSGSGPRSGACFNCGESGHMSRECPQNGSRGGDRRGGYERRGDDRRGNQRGTECYNCHESGHMSRECPKQRSNGPRSNGCYKCGESGHMARDCN 119

HSP 2 Score: 72.4034 bits (176), Expect = 8.000e-15
Identity = 47/170 (27.65%), Postives = 73/170 (42.94%), Query Frame = 3

Query:  276 FIDKSIICYKCNKVGHIARNCE--------SESAVCYGCGKEGHLFKECVSSSKKV----------------------CYNCNSTEHLVKDCPVNETEEHISN---YVDATSH---------TDEVSFRNDQCYNCKDFGHIARNCPKKSNKESVCYRCNRPGHLARNCN 659
               + + CY C K GH++R+C           S  C+ CG+ GH+ +EC  +  +                       CYNC+ + H+ ++CP   +    SN       + H         +D    R  +CYNC   GH++R CP     E  CY+CN+ GH++R CN
Sbjct:    1 MSSRRMECYNCGKDGHMSRDCTESKKSGSGPRSGACFNCGESGHMSRECPQNGSRGGDRRGGYERRGDDRRGNQRGTECYNCHESGHMSRECPKQRSNGPRSNGCYKCGESGHMARDCNQEGSDNRQERQVKCYNCNQNGHMSRECPN-GQSEKKCYKCNKIGHMSRECN 169

HSP 3 Score: 60.8474 bits (146), Expect = 9.624e-11
Identity = 42/161 (26.09%), Postives = 66/161 (40.99%), Query Frame = 3

Query:  144 STCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKSIICYKCNKVGHIARNCESE------SAVCYGCGKEGHLFKECVSSSKK-------VCYNCNSTEHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNC 587
              CF CG  GH++R C  + S      G +       R  +      +   CY C++ GH++R C  +      S  CY CG+ GH+ ++C              CYNCN   H+ ++CP  ++E+                    +CY C   GH++R C
Sbjct:   34 GACFNCGESGHMSRECPQNGSRGGDRRGGYERRGDDRRGNQ------RGTECYNCHESGHMSRECPKQRSNGPRSNGCYKCGESGHMARDCNQEGSDNRQERQVKCYNCNQNGHMSRECPNGQSEK--------------------KCYKCNKIGHMSREC 168

The following BLAST results are available for this feature:

BLAST of SMED30006417 vs. Ensembl Human
BLAST of SMED30006417 vs. Ensembl Celegans
BLAST of SMED30006417 vs. Ensembl Fly
BLAST of SMED30006417 vs. Ensembl Zebrafish
BLAST of SMED30006417 vs. Ensembl Xenopus
BLAST of SMED30006417 vs. Ensembl Mouse
BLAST of SMED30006417 vs. UniProt/SwissProt
BLAST of SMED30006417 vs. TrEMBL
BLAST of SMED30006417 vs. Ensembl Cavefish
BLAST of SMED30006417 vs. Ensembl Sea Lamprey
BLAST of SMED30006417 vs. Ensembl Yeast
BLAST of SMED30006417 vs. Ensembl Nematostella
BLAST of SMED30006417 vs. Ensembl Medaka
BLAST of SMED30006417 vs. Planmine SMEST

BLAST of SMED30006417 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
CNBP	9.079e-23	33.33	CCHC-type zinc finger nucleic acid binding protein...	[more]
CNBP	5.538e-22	33.69	CCHC-type zinc finger nucleic acid binding protein...	[more]
CNBP	1.555e-21	33.51	CCHC-type zinc finger nucleic acid binding protein...	[more]
CNBP	1.565e-21	32.40	CCHC-type zinc finger nucleic acid binding protein...	[more]
CNBP	2.482e-21	32.97	CCHC-type zinc finger nucleic acid binding protein...	[more]

BLAST of SMED30006417 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 4


Match Name	E-value	Identity	Description
K08D12.3	9.020e-8	29.37	pep chromosome:WBcel235:IV:1710265:1711127:1 gene:...	[more]
F40F12.9	1.097e-6	45.45	pep chromosome:WBcel235:III:9913021:9913625:1 gene...	[more]
F40F12.9	3.130e-6	45.24	pep chromosome:WBcel235:III:9913021:9913730:1 gene...	[more]
F40F12.9	3.130e-6	45.24	pep chromosome:WBcel235:III:9913021:9914075:1 gene...	[more]

BLAST of SMED30006417 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2


Match Name	E-value	Identity	Description
CNBP	1.410e-21	33.90	gene:FBgn0034802 transcript:FBtr0303464	[more]
CNBP	1.410e-21	33.90	gene:FBgn0034802 transcript:FBtr0071994	[more]

BLAST of SMED30006417 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
cnbpa	1.823e-20	30.39	CCHC-type zinc finger, nucleic acid binding protei...	[more]
cnbpa	1.823e-20	30.39	CCHC-type zinc finger, nucleic acid binding protei...	[more]
cnbpa	1.823e-20	30.39	CCHC-type zinc finger, nucleic acid binding protei...	[more]
cnbpb	1.101e-19	30.17	CCHC-type zinc finger, nucleic acid binding protei...	[more]
cnbpb	1.101e-19	30.17	CCHC-type zinc finger, nucleic acid binding protei...	[more]

BLAST of SMED30006417 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2


Match Name	E-value	Identity	Description
stk25	1.355e-7	25.32	serine/threonine kinase 25 [Source:Xenbase;Acc:XB-...	[more]
ENSXETT00000025799.1	1.659e-6	25.00	pep primary_assembly:Xenopus_tropicalis_v9.1:8:975...	[more]

BLAST of SMED30006417 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Cnbp	6.233e-23	33.33	cellular nucleic acid binding protein [Source:MGI ...	[more]
Cnbp	6.233e-23	33.33	cellular nucleic acid binding protein [Source:MGI ...	[more]
Cnbp	3.802e-22	33.69	cellular nucleic acid binding protein [Source:MGI ...	[more]
Cnbp	3.927e-22	33.89	cellular nucleic acid binding protein [Source:MGI ...	[more]
Zcchc13	7.806e-22	33.33	zinc finger, CCHC domain containing 13 [Source:MGI...	[more]

BLAST of SMED30006417 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|P62634\|CNBP_RAT	4.360e-22	33.33	Cellular nucleic acid-binding protein OS=Rattus no...	[more]
sp\|Q5R5R5\|CNBP_PONAB	4.360e-22	33.33	Cellular nucleic acid-binding protein OS=Pongo abe...	[more]
sp\|P62633\|CNBP_HUMAN	4.360e-22	33.33	Cellular nucleic acid-binding protein OS=Homo sapi...	[more]
sp\|P53996\|CNBP_MOUSE	2.659e-21	33.69	Cellular nucleic acid-binding protein OS=Mus muscu...	[more]
sp\|Q3T0Q6\|CNBP_BOVIN	1.192e-20	32.97	Cellular nucleic acid-binding protein OS=Bos tauru...	[more]

BLAST of SMED30006417 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A482WHT1	9.284e-25	37.14	Uncharacterized protein OS=Laodelphax striatellus ...	[more]
A0A2A4K6G8	2.659e-24	35.20	Uncharacterized protein OS=Heliothis virescens OX=...	[more]
A0A087T1Y2	4.678e-24	36.67	Cellular nucleic acid-binding protein (Fragment) O...	[more]
A0A1E1WT25	2.272e-23	33.52	Uncharacterized protein OS=Pectinophora gossypiell...	[more]
A0A5E4R3L5	2.771e-23	35.43	Uncharacterized protein OS=Leptidea sinapis OX=189...	[more]

BLAST of SMED30006417 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 4


Match Name	E-value	Identity	Description
ENSAMXT00000005562.2	5.329e-20	30.73	cellular nucleic acid-binding protein [Source:NCBI...	[more]
cnbpa	1.832e-18	30.00	cellular nucleic acid-binding protein-like [Source...	[more]
ENSAMXT00000049641.1	2.350e-8	33.33	pep primary_assembly:Astyanax_mexicanus-2.0:APWO02...	[more]
ENSAMXT00000047897.1	2.041e-6	36.84	pep primary_assembly:Astyanax_mexicanus-2.0:15:109...	[more]

BLAST of SMED30006417 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 2


Match Name	E-value	Identity	Description
ENSPMAT00000003739.1	4.344e-14	26.88	pep scaffold:Pmarinus_7.0:GL499243:411:1384:-1 gen...	[more]
ENSPMAT00000010393.1	1.803e-11	27.61	pep scaffold:Pmarinus_7.0:GL485791:8073:10868:-1 g...	[more]

BLAST of SMED30006417 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1


Match Name	E-value	Identity	Description
GIS2	1.906e-17	27.27	Translational activator for mRNAs with internal ri...	[more]

BLAST of SMED30006417 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 4


Match Name	E-value	Identity	Description
EDO27708	2.089e-11	30.66	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO36176	2.138e-9	25.00	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO28813	9.285e-8	29.51	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO45618	2.227e-7	29.75	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of SMED30006417 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 3


Match Name	E-value	Identity	Description
cnbpa	8.361e-19	29.55	CCHC-type zinc finger nucleic acid binding protein...	[more]
cnbpa	2.346e-15	31.64	CCHC-type zinc finger nucleic acid binding protein...	[more]
ENSORLT00000032413.1	2.786e-7	31.67	zinc finger CCHC-type containing 7 [Source:NCBI ge...	[more]

BLAST of SMED30006417 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000020671.1	3.151e-122	100.00	SMESG000020671.1	[more]
SMESG000008610.1	2.524e-19	32.46	SMESG000008610.1	[more]
SMESG000059266.1	2.393e-18	30.21	SMESG000059266.1	[more]
SMESG000059254.1	2.393e-18	30.21	SMESG000059254.1	[more]
SMESG000059283.1	1.003e-15	33.33	SMESG000059283.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30006417 ID=SMED30006417|Name=SMED30006417|organism=Schmidtea mediterranea sexual|type=transcript|length=1387bp
AGAGTTAAAATAATAACTCATAGTTTAAAAATTTTCATTTGTAGAAAATA
TGAACCATTGTTTCATAGACTCCTGATTTTCTATTGTCTATTTTCACTGC
AGATTATTTAAGAGAAATTCTATAATTTTTGATTTTAAACATGAGCACTT
GTTTCAAATGTGGAACTATAGGTCACATTGCCAGAAATTGCACAAATAGT
CAATCTTATTCAGAATCAATTAATGGTAATTTTGTCACCGGACGCGTTTT
CGTAAGAAATAAAAGGAACCAAAACTTTATAGATAAAAGTATTATTTGTT
ATAAATGCAATAAAGTTGGGCATATTGCTAGAAATTGTGAATCTGAAAGT
GCAGTTTGTTACGGTTGTGGGAAAGAAGGTCATTTGTTTAAGGAATGTGT
TTCATCATCTAAAAAAGTGTGTTATAATTGTAATAGTACAGAACACTTAG
TAAAAGATTGTCCAGTAAATGAAACAGAAGAGCATATTTCAAATTACGTT
GATGCAACTTCTCACACTGATGAGGTTTCTTTTCGCAATGATCAGTGCTA
CAACTGTAAAGATTTCGGTCATATTGCTCGAAACTGTCCAAAGAAATCAA
ATAAGGAATCAGTTTGTTACCGTTGCAATAGACCGGGACATCTAGCACGG
AATTGCAACTTCAACTAATTATTATTCTAGAGCTCTCCATAATAATATTA
GGAACCGTTTCTCGATTCGTGTCACTCAAATCTTCATCATTACCACGTGT
TTCATATTTATACATCTATTTATTTGATCCATTTTCTTTTCTTTTTTTCT
CCAATAGGCTTTATGCGATTTTCTCAGAGATGGATCTTATATCAATTGAT
CCGTTTTAGTTATTTGCACTTATTCAGTTCAATTCGATCAAACAATTACT
ATTTTATTACCATTGATTTTTAATGACATTTTAGTATTTTTTGATAAAAC
ATTGATTTTTTTGTTTGATTTTTGATAGATTTTGTGATTTTAAAAAACGT
TTCAGTGATTATTATTGCTTACTGGTGGCTTCTCTATTATTGAAACGTAA
CTTTCTGTTTTCTTTACAGCAATATGGTCAATAGACACTTTCACTTTTAT
TATTACAGTTGGCAAGGACAAATGGGAAAATTGCAAGGACGAATTGTTGC
AGTTTGCGAAACGAACATTTTTTAAATTTCATTATTCGTGTCGTCTAATT
TAAGTGAAAATTGTTCTTAGCGATTTTGGACTGTGTGTTCATTTAACGTG
TTTATAACATTAATTTTTATCAAAATTTAATCATAGAATATTGAACAATT
AGTGGCGAAGAAAAGATTTTGGAATACTGTTTTATATCGATGCCAATTTT
CCAATTTCCTGCAAGAAATAAAATTGTAATGTCTCTG

protein sequence of SMED30006417-orf-1

>SMED30006417-orf-1 ID=SMED30006417-orf-1|Name=SMED30006417-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=176bp
MSTCFKCGTIGHIARNCTNSQSYSESINGNFVTGRVFVRNKRNQNFIDKS
IICYKCNKVGHIARNCESESAVCYGCGKEGHLFKECVSSSKKVCYNCNST
EHLVKDCPVNETEEHISNYVDATSHTDEVSFRNDQCYNCKDFGHIARNCP
KKSNKESVCYRCNRPGHLARNCNFN*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0003116	parenchymal cell

Vocabulary: **INTERPRO**
Term	Definition
IPR036875	Znf_CCHC_sf
IPR001878	Znf_CCHC
IPR025836	Zn_knuckle_CX2CX4HX4C

Vocabulary: **molecular function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 3..19 e-value: 1.0E-4 score: 31.7 coord: 135..151 e-value: 4.5E-5 score: 32.9 coord: 52..68 e-value: 3.6E-4 score: 29.9 coord: 93..109 e-value: 0.0033 score: 26.5 coord: 72..88 e-value: 0.012 score: 23.0 coord: 158..174 e-value: 0.0053 score: 25.3
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 3..19 e-value: 6.5E-7 score: 29.1 coord: 52..66 e-value: 3.3E-6 score: 26.9 coord: 93..108 e-value: 3.7E-6 score: 26.7 coord: 135..151 e-value: 1.9E-6 score: 27.7 coord: 158..172 e-value: 7.9E-6 score: 25.7
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 4..19 score: 10.213
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 159..172 score: 10.345
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 136..151 score: 10.131
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 53..68 score: 10.197
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 94..108 score: 9.026
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 73..86 score: 10.015
None	No IPR available	GENE3D	G3DSA:4.10.60.10		coord: 123..154 e-value: 3.0E-9 score: 38.6
None	No IPR available	GENE3D	G3DSA:4.10.60.10		coord: 155..175 e-value: 2.3E-5 score: 26.5
None	No IPR available	GENE3D	G3DSA:4.10.60.10		coord: 70..122 e-value: 1.6E-13 score: 52.1
None	No IPR available	GENE3D	G3DSA:4.10.60.10		coord: 2..26 e-value: 3.6E-6 score: 28.5 coord: 41..69 e-value: 6.0E-6 score: 27.8
None	No IPR available	PANTHER	PTHR23002:SF89	CELLULAR NUCLEIC ACID-BINDING PROTEIN	coord: 4..89
None	No IPR available	PANTHER	PTHR23002	ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN	coord: 4..89
None	No IPR available	PANTHER	PTHR23002:SF89	CELLULAR NUCLEIC ACID-BINDING PROTEIN	coord: 91..172
None	No IPR available	PANTHER	PTHR23002	ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN	coord: 91..172
IPR025836	Zinc knuckle CX2CX4HX4C	PFAM	PF14392	zf-CCHC_4	coord: 72..86 e-value: 4.2 score: 7.2
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	coord: 70..110
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	coord: 131..173
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	coord: 3..23
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	coord: 42..67