U2 small nuclear ribonucleoprotein B

Overview


Name	U2 small nuclear ribonucleoprotein B
Smed ID	SMED30006347
Length (bp)	1389

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of U2 small nuclear ribonucleoprotein B (SMED30006347) t-SNE clustered cells

Violin plots show distribution of expression levels for U2 small nuclear ribonucleoprotein B (SMED30006347) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of U2 small nuclear ribonucleoprotein B (SMED30006347) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for U2 small nuclear ribonucleoprotein B (SMED30006347) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30006347

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 10

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
X1 cell	SMED30006347	h1SMcG0013111	SmedASXL_012094	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
pharynx	SMED30006347	h1SMcG0013111	dd_Smed_v4_2274_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30006347	h1SMcG0013111	dd_Smed_v4_2274_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
gut	SMED30006347	h1SMcG0013111	dd_Smed_v4_2274_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30006347	h1SMcG0013111	dd_Smed_v4_2274_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30006347	h1SMcG0013111	dd_Smed_v4_2274_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30006347	h1SMcG0013111	dd_Smed_v4_2274_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30006347	h1SMcG0013111	dd_Smed_v4_2274_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30006347	h1SMcG0013111	dd_Smed_v4_2274_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
Category 2 cell	SMED30006347	h1SMcG0013111	dd_Smed_v6_2274_0	dd_Smed_v6	PMID:29674432 Plass et al., 2018

Note: Hover over icons to view figure legend

Homology

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BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Human
Match: SNRPB2 (small nuclear ribonucleoprotein polypeptide B2 [Source:HGNC Symbol;Acc:HGNC:11155])

HSP 1 Score: 217.624 bits (553), Expect = 7.454e-68
Identity = 119/225 (52.89%), Postives = 169/225 (75.11%), Query Frame = 3

Query:   21 MEIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVERXXXXXXXXXXXXXXXXXXXXEAKLXXXXXXXXXXNPIDPS-QMPDQPPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            M+I PN+TIY+NN+N+KIKKEEL+++LYA+FSQFG +++I+  K +K++GQAFVIF+ + S+T A+  +Q FPFY KPMRIQY+KTDSDIISK +GT+ ++ KK  ++  K  ++  T  ++        S        P+ Q+PD PPN ILFL NLPE++NE+M+S+LFN+F G+KEVR+VP R DIAFVEF+N+  +G A+  LQ FKI P+H ++IT+AKK
Sbjct:    1 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTNKKPGQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225

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Query:   21 MEIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVERXXXXXXXXXXXXXXXXXXXXEAKLXXXXXXXXXXNPIDPS-QMPDQPPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            M+I PN+TIY+NN+N+KIKKEEL+++LYA+FSQFG +++I+  K +K++GQAFVIF+ + S+T A+  +Q FPFY KPMRIQY+KTDSDIISK +GT+ ++ KK  ++  K  ++  T  ++        S        P+ Q+PD PPN ILFL NLPE++NE+M+S+LFN+F G+KEVR+VP R DIAFVEF+N+  +G A+  LQ FKI P+H ++IT+AKK
Sbjct:    1 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTNKKPGQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225

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BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Human
Match: SNRPA (small nuclear ribonucleoprotein polypeptide A [Source:HGNC Symbol;Acc:HGNC:11151])

HSP 1 Score: 140.584 bits (353), Expect = 1.927e-39
Identity = 73/100 (73.00%), Postives = 91/100 (91.00%), Query Frame = 3

Query:   24 EIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVER 323
            E  PN+TIY+NNLNEKIKK+EL+K+LYA+FSQFG+IL+I+VS+ LK++GQAFVIF+ + SAT A+ SMQ FPFYDKPMRIQY+KTDSDII+K KGT+VER
Sbjct:    5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVER 104

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Human
Match: SNRPA (small nuclear ribonucleoprotein polypeptide A [Source:HGNC Symbol;Acc:HGNC:11151])

HSP 1 Score: 140.584 bits (353), Expect = 2.264e-39
Identity = 73/100 (73.00%), Postives = 91/100 (91.00%), Query Frame = 3

Query:   24 EIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVER 323
            E  PN+TIY+NNLNEKIKK+EL+K+LYA+FSQFG+IL+I+VS+ LK++GQAFVIF+ + SAT A+ SMQ FPFYDKPMRIQY+KTDSDII+K KGT+VER
Sbjct:    5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVER 104

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Human
Match: SNRPA (small nuclear ribonucleoprotein polypeptide A [Source:HGNC Symbol;Acc:HGNC:11151])

HSP 1 Score: 140.198 bits (352), Expect = 1.189e-37
Identity = 73/100 (73.00%), Postives = 91/100 (91.00%), Query Frame = 3

Query:   24 EIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVER 323
            E  PN+TIY+NNLNEKIKK+EL+K+LYA+FSQFG+IL+I+VS+ LK++GQAFVIF+ + SAT A+ SMQ FPFYDKPMRIQY+KTDSDII+K KGT+VER
Sbjct:    5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVER 104

HSP 2 Score: 114.775 bits (286), Expect = 2.365e-28
Identity = 56/91 (61.54%), Postives = 70/91 (76.92%), Query Frame = 3

Query:  438 PSQMP------DQPPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            P QMP      + PPN ILFLTNLPE++NELM+S+LFN+F G+KEVR+VP R DIAFVEFDNE  +G A+  LQ FKI  N+ ++I+FAKK
Sbjct:  192 PGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282

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BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Celegans
Match: rnp-2 (RNP (RRM RNA binding domain) containing [Source:UniProtKB/TrEMBL;Acc:Q21322])

HSP 1 Score: 185.267 bits (469), Expect = 5.037e-56
Identity = 106/225 (47.11%), Postives = 152/225 (67.56%), Query Frame = 3

Query:   18 MMEIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVERXXXXXXXXXXXXXXXXXXXXEAKLXXXXXXXXXXNPIDPSQMPDQPPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            M E+APN+T+Y+NNLNEKIK +ELRK+L AVF QFG I+ +M  + LK++GQA VIF+ + +A+ A  ++  FPFY+KPMRIQ+++ DSD+++++KGTY++R  K   E               K+ K  KS K  N  D       PPNKILF TNLP+ +   M+ ++FN+F G K++RMVP+RP IAFVEFD ++ +  A++ L NFKI   H +R+ +AKK
Sbjct:    1 MAEVAPNSTLYINNLNEKIKIDELRKSLVAVFKQFGEIVSVMCFRTLKMRGQAHVIFKELPAASAAREALNGFPFYEKPMRIQFAREDSDVVAQEKGTYIKREPKYLSE---------------KILKKPKSRKKENGGDGP----APPNKILFCTNLPDSATAEMLEIMFNQFAGLKDIRMVPNRPGIAFVEFDTDSLAIPARTTLNNFKISAEHTMRVDYAKK 206

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BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Celegans
Match: rnp-3 (RNP (RRM RNA binding domain) containing [Source:UniProtKB/TrEMBL;Acc:U4PBX2])

HSP 1 Score: 167.933 bits (424), Expect = 3.334e-49
Identity = 97/231 (41.99%), Postives = 150/231 (64.94%), Query Frame = 3

Query:   18 MMEIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVERXXXXXXXXXXXXXXXXXXXXEAKLXXXXXXXXXXNPIDPSQM----PDQP--PNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            M +I PN+TIYVNNLNEK+KK+EL+++L+ VF+QFG I+++M  ++ K++GQA ++F+ + SA+ A+ ++Q FPFY KPMRIQY++ DSD+IS+ KGT+VE+ +KS +               AK      +  G +  +P+Q      D P  PN ILF +N+PE +    I  +F++F G +EVR +P+  D AF+E+++E+ S  A+  L NF+I P   I + FA K
Sbjct:    1 MADINPNHTIYVNNLNEKVKKDELKRSLHMVFTQFGEIIQLMSFRKEKMRGQAHIVFKEVSSASNALRALQGFPFYGKPMRIQYAREDSDVISRAKGTFVEKRQKSTKI--------------AKKPYEKPAKNGKSAAEPTQKEPQETDGPGLPNNILFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEYESEDLSEPARQALDNFRITPTQQITVKFASK 217

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BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Celegans
Match: rnp-3 (RNP (RRM RNA binding domain) containing [Source:UniProtKB/TrEMBL;Acc:U4PBX2])

HSP 1 Score: 126.716 bits (317), Expect = 3.845e-34
Identity = 78/201 (38.81%), Postives = 123/201 (61.19%), Query Frame = 3

Query:  108 VFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVERXXXXXXXXXXXXXXXXXXXXEAKLXXXXXXXXXXNPIDPSQM----PDQP--PNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            VF+QFG I+++M  ++ K++GQA ++F+ + SA+ A+ ++Q FPFY KPMRIQY++ DSD+IS+ KGT+VE+ +KS +               AK      +  G +  +P+Q      D P  PN ILF +N+PE +    I  +F++F G +EVR +P+  D AF+E+++E+ S  A+  L NF+I P   I + FA K
Sbjct:    2 VFTQFGEIIQLMSFRKEKMRGQAHIVFKEVSSASNALRALQGFPFYGKPMRIQYAREDSDVISRAKGTFVEKRQKSTKI--------------AKKPYEKPAKNGKSAAEPTQKEPQETDGPGLPNNILFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEYESEDLSEPARQALDNFRITPTQQITVKFASK 188

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BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Fly
Match: snf (gene:FBgn0003449 transcript:FBtr0070748)

HSP 1 Score: 198.749 bits (504), Expect = 4.859e-61
Identity = 128/224 (57.14%), Postives = 163/224 (72.77%), Query Frame = 3

Query:   21 MEIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVERXXXXXXXXXXXXXXXXXXXXEAKLXXXXXXXXXXNPIDPSQMPDQPPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            ME+ PN TIY+NNLNEKIKKEEL+K+LYA+FSQFG+IL+I+  K LK++GQAFVIF+ I SA+ A+ +MQ FPFYDKPM+I YSK+DSDI++K KGT+ ERPKK               K +   S            +P+   +QPPN+ILFLTNLPE++NE+M+S+LFN+F G+KEVR+VP+R DIAFVEF  E  S  AK  LQ FKI P H ++ITFAKK
Sbjct:    1 MEMLPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASNALRTMQGFPFYDKPMQIAYSKSDSDIVAKIKGTFKERPKKVKPPKPAPGTDEKKDKKKKPSSAENS--------NPNAQTEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216

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BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Fly
Match: CG44249 (gene:FBgn0265184 transcript:FBtr0339103)

HSP 1 Score: 50.447 bits (119), Expect = 1.914e-6
Identity = 28/82 (34.15%), Postives = 50/82 (60.98%), Query Frame = 3

Query:   33 PNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIF---ENIKSATEAINSMQSFPFYDKPMRIQY 269
            P+N +Y+ NL + + +++LR+ LYA ++   + L+I V  + ++KGQAFV F    N +   +A+N      ++DKPM + Y
Sbjct:  324 PSNKLYIKNLAKSVDEQQLRE-LYAKYTAASK-LDIKVMHQGRMKGQAFVTFLDANNPEIIAQALNETNGLLWHDKPMIVCY 403

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BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Fly
Match: Sf3b6 (gene:FBgn0035692 transcript:FBtr0077015)

HSP 1 Score: 46.595 bits (109), Expect = 3.666e-6
Identity = 25/78 (32.05%), Postives = 42/78 (53.85%), Query Frame = 3

Query:   36 NNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQY 269
            N  +YV NL  KI  +E+    Y +F +FG I +I V    + +G AFV++E+I  A  A + +  F   ++ + + Y
Sbjct:   14 NRLLYVRNLPYKITSDEM----YDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLY 87

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BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Zebrafish
Match: snrpb2 (small nuclear ribonucleoprotein polypeptide B2 [Source:ZFIN;Acc:ZDB-GENE-060616-2])

HSP 1 Score: 205.297 bits (521), Expect = 2.455e-63
Identity = 112/226 (49.56%), Postives = 167/226 (73.89%), Query Frame = 3

Query:   21 MEIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVERXXXXXXXXXXXXXXXXXXXXEAKLXXXXXXXXXXNPIDPS--QMPDQPPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            M+I PN+TIY+NN+N+KIKKEEL+++LYA+FSQFG+I++I+  K ++++GQAFVIF+ + +AT A+  +Q FPFY+KPMRIQY+KTDSD++SK +GTY ++ KK  ++   +++       +            + P  P+  Q+PD PPN ILFL NLPE++NE+M+S+LFN+F G+KEVR+VP + DI+FVEF++E  +G AK  LQ F+I     ++IT+AKK
Sbjct:    1 MDIRPNHTIYINNVNDKIKKEELKRSLYALFSQFGQIMDIVALKTMRMRGQAFVIFKELSAATNALRQLQGFPFYNKPMRIQYAKTDSDLVSKMRGTYGDKEKKKEKKKKAQEQAAANANKKPA------GAVNTQPPPPATVQIPDNPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGKHDISFVEFESEAQAGVAKDALQGFRITATCAMKITYAKK 220

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Query:   21 MEIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVERXXXXXXXXXXXXXXXXXXXXEAKLXXXXXXXXXXNPIDPS--QMPDQPPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            M+I PN+TIY+NN+N+KIKKEEL+++LYA+FSQFG+I++I+  K ++++GQAFVIF+ + +AT A+  +Q FPFY+KPMRIQY+KTDSD++SK +GTY ++ KK  ++   +++       +            + P  P+  Q+PD PPN ILFL NLPE++NE+M+S+LFN+F G+KEVR+VP + DI+FVEF++E  +G AK  LQ F+I     ++IT+AKK
Sbjct:    1 MDIRPNHTIYINNVNDKIKKEELKRSLYALFSQFGQIMDIVALKTMRMRGQAFVIFKELSAATNALRQLQGFPFYNKPMRIQYAKTDSDLVSKMRGTYGDKEKKKEKKKKAQEQAAANANKKPA------GAVNTQPPPPATVQIPDNPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGKHDISFVEFESEAQAGVAKDALQGFRITATCAMKITYAKK 220

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BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Zebrafish
Match: snrpa (small nuclear ribonucleoprotein polypeptide A [Source:ZFIN;Acc:ZDB-GENE-030131-2841])

HSP 1 Score: 136.346 bits (342), Expect = 2.383e-37
Identity = 73/100 (73.00%), Postives = 90/100 (90.00%), Query Frame = 3

Query:   24 EIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVER 323
            E+  N+TIY+NNLNEKIKK+EL+K+LYA+FSQFG+IL+I+VS+ LK+KGQAFVIF+ I SA+ A+ SMQ FPFYDKPMRIQYSK DSDII+K KGT+VER
Sbjct:    5 EMRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRTLKMKGQAFVIFKEINSASNALRSMQGFPFYDKPMRIQYSKQDSDIIAKMKGTFVER 104

[Close]

Query:   24 EIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVER 323
            E+  N+TIY+NNLNEKIKK+EL+K+LYA+FSQFG+IL+I+VS+ LK+KGQAFVIF+ I SA+ A+ SMQ FPFYDKPMRIQYSK DSDII+K KGT+VER
Sbjct:    5 EMRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRTLKMKGQAFVIFKEINSASNALRSMQGFPFYDKPMRIQYSKQDSDIIAKMKGTFVER 104

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Zebrafish
Match: snrpa (small nuclear ribonucleoprotein polypeptide A [Source:ZFIN;Acc:ZDB-GENE-030131-2841])

HSP 1 Score: 136.346 bits (342), Expect = 2.532e-36
Identity = 73/100 (73.00%), Postives = 90/100 (90.00%), Query Frame = 3

Query:   24 EIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVER 323
            E+  N+TIY+NNLNEKIKK+EL+K+LYA+FSQFG+IL+I+VS+ LK+KGQAFVIF+ I SA+ A+ SMQ FPFYDKPMRIQYSK DSDII+K KGT+VER
Sbjct:    5 EMRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRTLKMKGQAFVIFKEINSASNALRSMQGFPFYDKPMRIQYSKQDSDIIAKMKGTFVER 104

HSP 2 Score: 116.316 bits (290), Expect = 4.388e-29
Identity = 56/89 (62.92%), Postives = 70/89 (78.65%), Query Frame = 3

Query:  438 PSQMPDQ----PPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            P QMP Q    PPN ILFLTNLPE++NELM+S+LFN+F G+KEVR+VP R DIAFVEFDNE  +G A+  LQ FKI  ++ ++I+FAKK
Sbjct:  193 PGQMPQQVSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAAREALQGFKITQSNAMKISFAKK 281

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BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Xenopus
Match: slc17a6 (solute carrier family 17 member 6 [Source:Xenbase;Acc:XB-GENE-1011394])

HSP 1 Score: 209.149 bits (531), Expect = 1.280e-64
Identity = 112/224 (50.00%), Postives = 165/224 (73.66%), Query Frame = 3

Query:   21 MEIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVERXXXXXXXXXXXXXXXXXXXXEAKLXXXXXXXXXXNPIDPSQMPDQPPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            M+I PN+T+Y+NNL +K+KK EL+++LYA+FSQFG +++I+  K +K++GQAFVIF+ + SAT A+  +Q FPFY+KPMRIQY+K+DSD+I K KGT+ ++ KK  ++  K +++     ++        +       +  Q+PD PPN ILFL NLPE++NE+M+S+LFN+F G+KEVR+VP R DIAFVEF+NE  +G A+  LQ FKI P+H ++IT+A K
Sbjct:    1 MDIRPNHTVYINNLCDKVKKPELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELSSATNALRQLQGFPFYNKPMRIQYAKSDSDVILKMKGTFADKEKKKEKKKAKAQEQAANAANKKPALASNANNAPGASQN-QQVPDNPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENETEAGAARDALQGFKITPSHAMKITYANK 223

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Xenopus
Match: slc17a6 (solute carrier family 17 member 6 [Source:Xenbase;Acc:XB-GENE-1011394])

HSP 1 Score: 205.297 bits (521), Expect = 4.886e-63
Identity = 114/234 (48.72%), Postives = 167/234 (71.37%), Query Frame = 3

Query:   21 MEIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVERXXXXXXXXXXXXXXXXXXXXEA-------KLXXXXXXXXXXNPIDPS---QMPDQPPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            M+I PN+T+Y+NNL +K+KK EL+++LYA+FSQFG +++I+  K +K++GQAFVIF+ + SAT A+  +Q FPFY+KPMRIQY+K+DSD+I K KGT+ ++ KK  ++  K +++     ++               +   +N    S   Q+PD PPN ILFL NLPE++NE+M+S+LFN+F G+KEVR+VP R DIAFVEF+NE  +G A+  LQ FKI P+H ++IT+A K
Sbjct:    1 MDIRPNHTVYINNLCDKVKKPELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELSSATNALRQLQGFPFYNKPMRIQYAKSDSDVILKMKGTFADKEKKKEKKKAKAQEQAANAANKKIGDLVFFCFFLHYFASNANNAPGASQNQQVPDNPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENETEAGAARDALQGFKITPSHAMKITYANK 234

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Xenopus
Match: tubgcp5 (tubulin gamma complex associated protein 5 [Source:Xenbase;Acc:XB-GENE-494053])

HSP 1 Score: 145.206 bits (365), Expect = 1.461e-39
Identity = 76/100 (76.00%), Postives = 92/100 (92.00%), Query Frame = 3

Query:   24 EIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVER 323
            E+ PNNTIY+NNLNEKIKK+EL+K+LYA+FSQFG+IL+I+VS+ LK++GQAFVIF+ I SAT A+ SMQ FPFYDKPMRIQYSK+DSDII+K KGTYVER
Sbjct:    9 EVRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEISSATNALRSMQGFPFYDKPMRIQYSKSDSDIIAKMKGTYVER 108

HSP 2 Score: 110.923 bits (276), Expect = 5.201e-27
Identity = 51/80 (63.75%), Postives = 66/80 (82.50%), Query Frame = 3

Query:  453 DQPPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            + PPN ILFLTNLPE++NELM+S+LFN+F G+KEVR+VP R DIAFVEFDNE  +G A+  LQ FKI  ++ ++I+FAKK
Sbjct:  201 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARESLQGFKITQSNSMKISFAKK 280

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Xenopus
Match: tubgcp5 (tubulin gamma complex associated protein 5 [Source:Xenbase;Acc:XB-GENE-494053])

HSP 1 Score: 145.206 bits (365), Expect = 1.474e-39
Identity = 76/100 (76.00%), Postives = 92/100 (92.00%), Query Frame = 3

Query:   24 EIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVER 323
            E+ PNNTIY+NNLNEKIKK+EL+K+LYA+FSQFG+IL+I+VS+ LK++GQAFVIF+ I SAT A+ SMQ FPFYDKPMRIQYSK+DSDII+K KGTYVER
Sbjct:    5 EVRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEISSATNALRSMQGFPFYDKPMRIQYSKSDSDIIAKMKGTYVER 104

HSP 2 Score: 111.309 bits (277), Expect = 4.955e-27
Identity = 51/80 (63.75%), Postives = 66/80 (82.50%), Query Frame = 3

Query:  453 DQPPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            + PPN ILFLTNLPE++NELM+S+LFN+F G+KEVR+VP R DIAFVEFDNE  +G A+  LQ FKI  ++ ++I+FAKK
Sbjct:  203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARESLQGFKITQSNSMKISFAKK 282

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Mouse
Match: Snrpb2 (U2 small nuclear ribonucleoprotein B [Source:MGI Symbol;Acc:MGI:104805])

HSP 1 Score: 218.779 bits (556), Expect = 1.788e-68
Identity = 117/225 (52.00%), Postives = 168/225 (74.67%), Query Frame = 3

Query:   21 MEIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVERXXXXXXXXXXXXXXXXXXXXEAKLXXXXXXXXXXNPIDPS-QMPDQPPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            M+I PN+TIY+NN+N+KIKKEEL+++LYA+FSQFG +++I+  K +K++GQAFVIF+ + S+T A+  +Q FPFY KPMRIQY+KTDSDIISK +GT+ ++ KK  ++  K  ++     ++        +        P+ Q+PD PPN ILFL NLPE++NE+M+S+LFN+F G+KEVR+VP R DIAFVEF+N+  +G A+  LQ FKI P+H ++IT+AKK
Sbjct:    1 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTMEQAAAAANKKPGQGTPNAANTQGTAAPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Mouse
Match: Snrpa (small nuclear ribonucleoprotein polypeptide A [Source:MGI Symbol;Acc:MGI:1855690])

HSP 1 Score: 136.732 bits (343), Expect = 7.103e-37
Identity = 71/96 (73.96%), Postives = 89/96 (92.71%), Query Frame = 3

Query:   36 NNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVER 323
            N+TIY+NNLNEKIKK+EL+K+LYA+FSQFG+IL+I+VS+ +K++GQAFVIF+ + SAT A+ SMQ FPFYDKPMRIQY+KTDSDII+K KGTYVER
Sbjct:   15 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVER 110

HSP 2 Score: 68.5514 bits (166), Expect = 1.256e-12
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 3

Query:  438 PSQMP------DQPPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPS 572
            P QMP      + PPN ILFLTNLPE++NELM+S+LFN+F G+KEVR+VP 
Sbjct:  197 PGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG 247

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Mouse
Match: Snrpa (small nuclear ribonucleoprotein polypeptide A [Source:MGI Symbol;Acc:MGI:1855690])

HSP 1 Score: 136.732 bits (343), Expect = 1.815e-36
Identity = 72/100 (72.00%), Postives = 90/100 (90.00%), Query Frame = 3

Query:   24 EIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVER 323
            E   N+TIY+NNLNEKIKK+EL+K+LYA+FSQFG+IL+I+VS+ +K++GQAFVIF+ + SAT A+ SMQ FPFYDKPMRIQY+KTDSDII+K KGTYVER
Sbjct:   11 ETRANHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVER 110

HSP 2 Score: 115.161 bits (287), Expect = 1.433e-28
Identity = 56/91 (61.54%), Postives = 70/91 (76.92%), Query Frame = 3

Query:  438 PSQMP------DQPPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            P QMP      + PPN ILFLTNLPE++NELM+S+LFN+F G+KEVR+VP R DIAFVEFDNE  +G A+  LQ FKI  N+ ++I+FAKK
Sbjct:  197 PGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 287

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Mouse
Match: Snrpa (small nuclear ribonucleoprotein polypeptide A [Source:MGI Symbol;Acc:MGI:1855690])

HSP 1 Score: 136.732 bits (343), Expect = 1.815e-36
Identity = 72/100 (72.00%), Postives = 90/100 (90.00%), Query Frame = 3

Query:   24 EIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVER 323
            E   N+TIY+NNLNEKIKK+EL+K+LYA+FSQFG+IL+I+VS+ +K++GQAFVIF+ + SAT A+ SMQ FPFYDKPMRIQY+KTDSDII+K KGTYVER
Sbjct:   11 ETRANHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVER 110

HSP 2 Score: 115.161 bits (287), Expect = 1.433e-28
Identity = 56/91 (61.54%), Postives = 70/91 (76.92%), Query Frame = 3

Query:  438 PSQMP------DQPPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            P QMP      + PPN ILFLTNLPE++NELM+S+LFN+F G+KEVR+VP R DIAFVEFDNE  +G A+  LQ FKI  N+ ++I+FAKK
Sbjct:  197 PGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 287

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Mouse
Match: Snrpa (small nuclear ribonucleoprotein polypeptide A [Source:MGI Symbol;Acc:MGI:1855690])

HSP 1 Score: 136.732 bits (343), Expect = 1.815e-36
Identity = 72/100 (72.00%), Postives = 90/100 (90.00%), Query Frame = 3

Query:   24 EIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVER 323
            E   N+TIY+NNLNEKIKK+EL+K+LYA+FSQFG+IL+I+VS+ +K++GQAFVIF+ + SAT A+ SMQ FPFYDKPMRIQY+KTDSDII+K KGTYVER
Sbjct:   11 ETRANHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVER 110

HSP 2 Score: 115.161 bits (287), Expect = 1.433e-28
Identity = 56/91 (61.54%), Postives = 70/91 (76.92%), Query Frame = 3

Query:  438 PSQMP------DQPPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            P QMP      + PPN ILFLTNLPE++NELM+S+LFN+F G+KEVR+VP R DIAFVEFDNE  +G A+  LQ FKI  N+ ++I+FAKK
Sbjct:  197 PGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 287

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. UniProt/SwissProt
Match: sp|Q9CQI7|RU2B_MOUSE (U2 small nuclear ribonucleoprotein B'' OS=Mus musculus OX=10090 GN=Snrpb2 PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.251e-67
Identity = 117/225 (52.00%), Postives = 168/225 (74.67%), Query Frame = 3

Query:   21 MEIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVERXXXXXXXXXXXXXXXXXXXXEAKLXXXXXXXXXXNPIDPS-QMPDQPPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            M+I PN+TIY+NN+N+KIKKEEL+++LYA+FSQFG +++I+  K +K++GQAFVIF+ + S+T A+  +Q FPFY KPMRIQY+KTDSDIISK +GT+ ++ KK  ++  K  ++     ++        +        P+ Q+PD PPN ILFL NLPE++NE+M+S+LFN+F G+KEVR+VP R DIAFVEF+N+  +G A+  LQ FKI P+H ++IT+AKK
Sbjct:    1 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTMEQAAAAANKKPGQGTPNAANTQGTAAPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. UniProt/SwissProt
Match: sp|P08579|RU2B_HUMAN (U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens OX=9606 GN=SNRPB2 PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 3.579e-67
Identity = 119/225 (52.89%), Postives = 169/225 (75.11%), Query Frame = 3

Query:   21 MEIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVERXXXXXXXXXXXXXXXXXXXXEAKLXXXXXXXXXXNPIDPS-QMPDQPPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            M+I PN+TIY+NN+N+KIKKEEL+++LYA+FSQFG +++I+  K +K++GQAFVIF+ + S+T A+  +Q FPFY KPMRIQY+KTDSDIISK +GT+ ++ KK  ++  K  ++  T  ++        S        P+ Q+PD PPN ILFL NLPE++NE+M+S+LFN+F G+KEVR+VP R DIAFVEF+N+  +G A+  LQ FKI P+H ++IT+AKK
Sbjct:    1 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTNKKPGQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. UniProt/SwissProt
Match: sp|P43332|SNRPA_DROME (U1 small nuclear ribonucleoprotein A OS=Drosophila melanogaster OX=7227 GN=snf PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 4.871e-60
Identity = 128/224 (57.14%), Postives = 163/224 (72.77%), Query Frame = 3

Query:   21 MEIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVERXXXXXXXXXXXXXXXXXXXXEAKLXXXXXXXXXXNPIDPSQMPDQPPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            ME+ PN TIY+NNLNEKIKKEEL+K+LYA+FSQFG+IL+I+  K LK++GQAFVIF+ I SA+ A+ +MQ FPFYDKPM+I YSK+DSDI++K KGT+ ERPKK               K +   S            +P+   +QPPN+ILFLTNLPE++NE+M+S+LFN+F G+KEVR+VP+R DIAFVEF  E  S  AK  LQ FKI P H ++ITFAKK
Sbjct:    1 MEMLPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASNALRTMQGFPFYDKPMQIAYSKSDSDIVAKIKGTFKERPKKVKPPKPAPGTDEKKDKKKKPSSAENS--------NPNAQTEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. UniProt/SwissProt
Match: sp|Q8H1S6|RU2B2_ARATH (U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g06960 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.350e-53
Identity = 97/225 (43.11%), Postives = 155/225 (68.89%), Query Frame = 3

Query:   24 EIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVERXXXXXXXXXXXXXXXXXXXXEAKL--XXXXXXXXXXNPIDPSQMPDQPPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            +I PN +IY+ ++NEKIKKEEL+++LY +FSQFGR+L+++  K  KL+GQA+V+F  + +A+ A+  MQ+FPFYDKPMRIQY+K+ SD ++K +G++V + KK  +E   ++K+      +  +      ++G    P  PS     PPN ILF+ NLP ++N +M+ +LF ++ G+KE+RM+ ++P IAFVE++++  S  A   LQ FKI P + + ++FAKK
Sbjct:    5 DIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHAEETQQPSMPNGATTQNGMPVPPFQPSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. UniProt/SwissProt
Match: sp|O22922|RU2B1_ARATH (U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 9.717e-52
Identity = 97/228 (42.54%), Postives = 150/228 (65.79%), Query Frame = 3

Query:   24 EIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVERXXXXXXXXXXXXXXXXXXXXEAKLXXXXXXXXXXNPI-----DPSQMPDQPPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            +I PN +IY+ NLNE+IKKEEL+++LY +FSQFGRIL+++  K  KL+GQA+V F  + +A  A+  MQ+FPFYDKPMR+QY+K  SD ++K +GT+V + KK  +E   ++K+  + +              +N +      PS     PPN ILF+ NLP ++  +M+ +LF ++ G+KE+RM+ ++P IAFVE++++  +  A   LQ FKI P + + I+FAKK
Sbjct:    5 DIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKREDSQRPNTANGPSANGPSANNGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. TrEMBL
Match: A0A0N0U768 (U2 small nuclear ribonucleoprotein B OS=Melipona quadrifasciata OX=166423 GN=WN51_11539 PE=4 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 1.264e-73
Identity = 137/231 (59.31%), Postives = 176/231 (76.19%), Query Frame = 3

Query:   21 MEIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVERXXXXXXXXXXXXXXXXXXXXEAKLXXXXXXXXXXN---PIDP----SQMPDQPPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            M+I PNNTIY+NNLNEKIKK+EL+K+LYA+FSQFG+IL+I+  K LK++GQAFVIF+ I SAT A+ SMQ FPFYDKPMRIQY+KTDSDII+K KGTY ERPKK    +    ++    K  AK         G +   P  P    + +P+QPPN+ILFLTNLP++++E+M+S+LFN+F G+KEVR+VP+R DIAFVEF+NE  SG AK  LQ FKI P+H ++I+FAKK
Sbjct:    1 MDIRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYAERPKKPKRVVPAADEEAKRAKKRAKEQAKHSQQIGYHAGVPQHPGLVNTAVPEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEVQSGAAKDALQGFKITPSHAMKISFAKK 231

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. TrEMBL
Match: E2C3U3 (U2 small nuclear ribonucleoprotein B'' OS=Harpegnathos saltator OX=610380 GN=EAI_14459 PE=4 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 6.428e-73
Identity = 135/231 (58.44%), Postives = 176/231 (76.19%), Query Frame = 3

Query:   21 MEIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVERXXXXXXXXXXXXXXXXXXXXEAKLXXXXXXXXXXN---PIDP----SQMPDQPPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            M+I PNNTIY+NNLNEKIKK+EL+K+LYA+FSQFG+IL+I+  K LK++GQAFVIF+ I SAT A+ SMQ FPFYDKPMRIQY+KTDSD+I+K KGT+ ERPKK    +    ++    K  AK         G +   P  P    + +P+QPPN+ILFLTNLP++++E+M+S+LFN+F G+KEVR+VP+R DIAFVEF+NE  SG AK  LQ FKI P+H ++I+FAKK
Sbjct:    1 MDIRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSATNALRSMQGFPFYDKPMRIQYAKTDSDLIAKMKGTFAERPKKPKRVVPAADEEAKRAKKRAKEQAKHSQQIGYHAGVPQHPGLVNTAVPEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEVQSGAAKDALQGFKITPSHAMKISFAKK 231

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. TrEMBL
Match: A0A026VTW3 (U2 small nuclear ribonucleoprotein B OS=Ooceraea biroi OX=2015173 GN=DMN91_001210 PE=4 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 7.160e-73
Identity = 136/231 (58.87%), Postives = 176/231 (76.19%), Query Frame = 3

Query:   21 MEIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVERXXXXXXXXXXXXXXXXXXXXEAKLXXXXXXXXXXN---PIDP----SQMPDQPPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            M+I PNNTIY+NNLNEKIKK+EL+K+LYA+FSQFG+IL+I+  K LK++GQAFVIF+ I SAT A+ SMQ FPFYDKPMRIQY+KTDSDII+K KGT+ ERPKK    +    ++    K  AK         G +   P  P    + +P+QPPN+ILFLTNLP++++E+M+S+LFN+F G+KEVR+VP+R DIAFVEF+NE  SG AK  LQ FKI P+H ++I+FAKK
Sbjct:    1 MDIRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFAERPKKPKRVVPVADEEAKRAKKRAKEQAKHSQQIGYHAGVPQHPGLVNTAVPEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEVQSGAAKDALQGFKITPSHAMKISFAKK 231

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BLAST of U2 small nuclear ribonucleoprotein B vs. TrEMBL
Match: A0A2A3EE87 (U2 small nuclear ribonucleoprotein B OS=Apis cerana cerana OX=94128 GN=APICC_02996 PE=4 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 8.506e-73
Identity = 135/231 (58.44%), Postives = 175/231 (75.76%), Query Frame = 3

Query:   21 MEIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVERXXXXXXXXXXXXXXXXXXXXEAKLXXXXXXXXXXNP-------IDPSQMPDQPPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            M+I PNNTIY+NNLNEKIKK+EL+K+LYA+FSQFG+IL+I+  K LK++GQAFVIF+ I SAT A+ SMQ FPFYDKPMRIQY+KTDSDII+K KGTY ERPKK    +    ++    K  AK         G +        +  + +P+QPPN+ILFLTNLP++++E+M+S+LFN+F G+KEVR+VP+R DIAFVEF+NE  SG AK  LQ FKI P+H ++I+FAKK
Sbjct:    1 MDIRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYAERPKKPKRVVPAADEEAKRAKKRAKEQAKHSQQIGYHTGVQQHPGLVNTAVPEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEVQSGAAKDALQGFKITPSHAMKISFAKK 231

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. TrEMBL
Match: A0A224Z4L3 (U2 small nuclear ribonucleoprotein B OS=Rhipicephalus zambeziensis OX=60191 PE=4 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 5.537e-72
Identity = 130/229 (56.77%), Postives = 169/229 (73.80%), Query Frame = 3

Query:   18 MMEIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVE--RXXXXXXXXXXXXXXXXXXXXEAKLXXXXXXXXXXNPIDPSQ--MPDQPPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            MM+I PNNTIY+NNLNEK+KK+EL+K+LYA+FSQFG+IL+I+  K LK++GQAFV F++I SAT A+ SMQ FPFYDKPMRIQY+KTDSD ++K KGT+VE  R +   +     KK +         +          P+  +   +P+QPPN+ILFLTNLPE++NE+M+S+LFN+F G+KEVR+VP R DIAFVEF+NE  S  AK  LQ FKI P H ++ITFAKK
Sbjct:    1 MMDIRPNNTIYINNLNEKVKKDELKKSLYAIFSQFGQILDIIALKTLKMRGQAFVAFKDINSATNALRSMQGFPFYDKPMRIQYAKTDSDAVAKLKGTFVENSRKRTPADGEPAPKKSKKKKTQPQAQAAPAMMMGVGMPMAAATGALPEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENEIQSSAAKEALQGFKITPTHAMKITFAKK 229

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BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Cavefish
Match: snrpb2 (small nuclear ribonucleoprotein polypeptide B2 [Source:NCBI gene;Acc:103032130])

HSP 1 Score: 209.92 bits (533), Expect = 3.066e-65
Identity = 116/224 (51.79%), Postives = 166/224 (74.11%), Query Frame = 3

Query:   21 MEIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVERXXXXXXXXXXXXXXXXXXXXEAKLXXXXXXXXXXNPIDPSQMPDQPPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            M+I PN+TIY+NN+N+KIKKEEL+++LYA+FSQFG+I+EI+  K +K++GQAFV+F+ + +AT A+  +Q FPFY+KPMRIQY+KTDSD+++K +GTY ++     E+  +KKKK     + A             P    Q+PD PPN ILFL NLPE++NE+M+S+LFN+F G+KEVR+VP + DIAFVEF++E+ +G AK  LQ F+I     ++IT+AKK
Sbjct:    1 MDIRPNHTIYINNVNDKIKKEELKRSLYALFSQFGQIIEIVALKTMKMRGQAFVVFKELAAATNALRQLQGFPFYNKPMRIQYAKTDSDVVAKMRGTYGDK-----EKKKEKKKKAQEQAANAAKKPQNAVNTQPAPPATVQVPDNPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGKHDIAFVEFESESQAGVAKDALQGFRITATCAMKITYAKK 219

[Close]

Query:   21 MEIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVERXXXXXXXXXXXXXXXXXXXXEAKLXXXXXXXXXXNPIDPSQMPDQPPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            M+I PN+TIY+NN+N+KIKKEEL+++LYA+FSQFG+I+EI+  K +K++GQAFV+F+ + +AT A+  +Q FPFY+KPMRIQY+KTDSD+++K +GTY ++     E+  +KKKK     + A             P    Q+PD PPN ILFL NLPE++NE+M+S+LFN+F G+KEVR+VP + DIAFVEF++E+ +G AK  LQ F+I     ++IT+AKK
Sbjct:    1 MDIRPNHTIYINNVNDKIKKEELKRSLYALFSQFGQIIEIVALKTMKMRGQAFVVFKELAAATNALRQLQGFPFYNKPMRIQYAKTDSDVVAKMRGTYGDK-----EKKKEKKKKAQEQAANAAKKPQNAVNTQPAPPATVQVPDNPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGKHDIAFVEFESESQAGVAKDALQGFRITATCAMKITYAKK 219

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Cavefish
Match: snrpb2 (small nuclear ribonucleoprotein polypeptide B2 [Source:NCBI gene;Acc:103032130])

HSP 1 Score: 206.068 bits (523), Expect = 7.967e-64
Identity = 111/224 (49.55%), Postives = 162/224 (72.32%), Query Frame = 3

Query:   21 MEIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVERXXXXXXXXXXXXXXXXXXXXEAKLXXXXXXXXXXNPIDPSQMPDQPPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            M+I PN+TIY+NN+N+KIKKEEL+++LYA+FSQFG+I+EI+  K +K++GQAFV+F+ + +AT A+  +Q FPFY+KPMRIQY+KTDSD+++K +GTY ++                  K + K ++   +     P     +PD PPN ILFL NLPE++NE+M+S+LFN+F G+KEVR+VP + DIAFVEF++E+ +G AK  LQ F+I     ++IT+AKK
Sbjct:    1 MDIRPNHTIYINNVNDKIKKEELKRSLYALFSQFGQIIEIVALKTMKMRGQAFVVFKELAAATNALRQLQGFPFYNKPMRIQYAKTDSDVVAKMRGTYGDK---------------EKKKEKKKKAQEQAANAAKKPQVSPFVPDNPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGKHDIAFVEFESESQAGVAKDALQGFRITATCAMKITYAKK 209

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Cavefish
Match: snrpa (small nuclear ribonucleoprotein polypeptide A [Source:NCBI gene;Acc:103028350])

HSP 1 Score: 136.732 bits (343), Expect = 1.483e-36
Identity = 71/100 (71.00%), Postives = 90/100 (90.00%), Query Frame = 3

Query:   24 EIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVER 323
            E+  N+TIY+NNLNEKIKK+EL+K+LYA+FSQFG+IL+I+VS+ LK++GQAFVIF+ + SA+ A+ SMQ FPFYDKPMRIQY+K DSDII+K KGTYVER
Sbjct:    5 ELRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRTLKMRGQAFVIFKEVNSASNALRSMQGFPFYDKPMRIQYAKQDSDIIAKMKGTYVER 104

HSP 2 Score: 116.701 bits (291), Expect = 3.364e-29
Identity = 56/89 (62.92%), Postives = 69/89 (77.53%), Query Frame = 3

Query:  438 PSQMPDQ----PPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            P QMP Q    PPN ILFLTNLPE++NELM+S+LFN+F G+KEVR+VP R DIAFVEFDNE  +G A+  LQ FKI   + ++I+FAKK
Sbjct:  193 PGQMPQQVSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAAREALQGFKITQTNAMKISFAKK 281

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BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Sea Lamprey
Match: ENSPMAT00000004128.1 (pep scaffold:Pmarinus_7.0:GL493652:2141:4533:1 gene:ENSPMAG00000003771.1 transcript:ENSPMAT00000004128.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 110.153 bits (274), Expect = 1.303e-28
Identity = 63/96 (65.62%), Postives = 79/96 (82.29%), Query Frame = 3

Query:   36 NNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVER 323
            + TIY+N  +E +   EL+K+LYA+FSQFG+IL+I+  K LK++GQAFVIF+ I SAT A+ SMQ FPFYDKPMRIQYSK DSDII+K KGT+VER
Sbjct:    9 DRTIYIN-YSEVLSPVELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEISSATNALRSMQGFPFYDKPMRIQYSKVDSDIIAKMKGTFVER 103

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Sea Lamprey
Match: ENSPMAT00000006657.1 (pep scaffold:Pmarinus_7.0:GL484402:615:2775:1 gene:ENSPMAG00000006008.1 transcript:ENSPMAT00000006657.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 45.0542 bits (105), Expect = 3.187e-6
Identity = 24/78 (30.77%), Postives = 42/78 (53.85%), Query Frame = 3

Query:   36 NNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQY 269
            N  +YV NL  KI  EE    +Y +F ++G I +I V    + +G A+V++E+I  A  A + +  F   ++ + + Y
Sbjct:   18 NRILYVRNLPYKITAEE----MYDIFGKYGAIRQIRVGTTPESRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLY 91

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Yeast
Match: MSL1 (U2B component of U2 snRNP; involved in splicing, binds the U2 snRNA stem-loop IV in vitro but requires association of Lea1p for in vivo binding; does not contain the conserved C-terminal RNA binding domain found in other family members [Source:SGD;Acc:S000001448])

HSP 1 Score: 57.3806 bits (137), Expect = 8.362e-11
Identity = 28/77 (36.36%), Postives = 50/77 (64.94%), Query Frame = 3

Query:   39 NTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQY 269
            NT+YV+ LNEKI  + LR  L+ +F+ FG +L++ ++ + K +GQAF+    I  A+ A  S+    F+ KP+++++
Sbjct:   28 NTLYVSQLNEKINMQRLRVNLFLLFATFGEVLKVSMNFK-KQRGQAFITMRTIDQASLAQISLNGERFFGKPLKVEF 103

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BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Yeast
Match: MUD1 (U1 snRNP A protein; homolog of human U1-A; involved in nuclear mRNA splicing [Source:SGD;Acc:S000000323])

HSP 1 Score: 46.2098 bits (108), Expect = 4.769e-6
Identity = 27/83 (32.53%), Postives = 47/83 (56.63%), Query Frame = 3

Query:  441 SQMPDQPPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAK 689
            S   + PPNK+L + NLP  + E ++S +        E+R+V  R ++AFVE++   ++ + K+QL +     N+ + I FAK
Sbjct:  218 SNTMENPPNKVLLIQNLPSGTTEQLLSQILGN-EALVEIRLVSVR-NLAFVEYETVADATKIKNQLGSTYKLQNNDVTIGFAK 298

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Nematostella
Match: EDO47757 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RKX3])

HSP 1 Score: 193.356 bits (490), Expect = 2.220e-59
Identity = 121/224 (54.02%), Postives = 158/224 (70.54%), Query Frame = 3

Query:   21 MEIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVERXXXXXXXXXXXXXXXXXXXXEAKLXXXXXXXXXXNPIDPSQMPDQPPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            ME  PN TIY+ NLNEKIKKEEL+K+LYA+FSQFG IL+I+  K LK++GQAFV+F++I SAT A+ SMQ FPFYDKPMRIQY+K  SD ++K +GT+V R KK  E+    +     I +   +              P+Q PD  PN ILFLTNLP ++ ELM+S+LFN+F G+KEVR+VP R DI+FVEF+NE  +G AK  LQ F+I P + + I++AKK
Sbjct:    1 MENPPNQTIYIKNLNEKIKKEELKKSLYAIFSQFGPILDIVALKTLKMRGQAFVVFKDIGSATNALRSMQGFPFYDKPMRIQYAKGKSDAVAKAEGTFVPREKKPKEKRKAPENAGAPIAAPMAI--------------PTQQPDL-PNNILFLTNLPMETTELMLSMLFNQFPGFKEVRLVPGRSDISFVEFENEVQAGTAKDALQGFRITPTNAMSISYAKK 209

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Nematostella
Match: EDO26232 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7TCJ0])

HSP 1 Score: 47.3654 bits (111), Expect = 1.312e-6
Identity = 21/77 (27.27%), Postives = 40/77 (51.95%), Query Frame = 3

Query:  459 PPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAK 689
            PP++ L L+N+PE   E  ++ +F       + R +P    +A +       +  A  ++ N+KI   HH+R++FA+
Sbjct:   61 PPSRTLHLSNIPESVTEEELTSMFEDCGDVADFRFLPKDRKMAHLSMATTEEAIDALIKMHNYKISETHHLRVSFAR 137

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Nematostella
Match: EDO43995 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RXA3])

HSP 1 Score: 47.7506 bits (112), Expect = 6.240e-6
Identity = 21/77 (27.27%), Postives = 40/77 (51.95%), Query Frame = 3

Query:  459 PPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAK 689
            PP++ L L+N+PE   E  ++ +F       + R +P    +A +       +  A  ++ N+KI   HH+R++FA+
Sbjct:  391 PPSRTLHLSNIPESVTEEELTSMFEDCGDVADFRFLPKDRKMAHLSMATTEEAIDALIKMHNYKISETHHLRVSFAR 467

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Medaka
Match: snrpa (small nuclear ribonucleoprotein polypeptide A [Source:NCBI gene;Acc:101155621])

HSP 1 Score: 230.335 bits (586), Expect = 4.012e-73
Identity = 133/225 (59.11%), Postives = 169/225 (75.11%), Query Frame = 3

Query:   24 EIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVERXXXXXXXXXXXXXXXXXXXXEAKLXXXXXXXXXXNPIDPSQMP--DQPPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            E+ PN+TIY+NNLNEKIKK+EL+K+LYA+FSQFG+IL+I+V++ LK+KGQAFVIF+ I SA+ A+ SMQ FPFYDKPMRIQYSKTDSDII+K KGTYVER +K  +   K +       + A +              P+ MP  + PPN ILFLTNLPE++NELM+S+LFN+F G+KEVR+VP R DIAFVEFDNE  +G A+  LQ FKI   H ++I+FAKK
Sbjct:    5 EVRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARTLKMKGQAFVIFKEINSASNALRSMQGFPFYDKPMRIQYSKTDSDIIAKMKGTYVERERKKEKRKPKPEGTGAKKAAAAAMMAGV----------PTAMPVAENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDSLQGFKITQTHAMKISFAKK 219

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Medaka
Match: snrpb2 (small nuclear ribonucleoprotein polypeptide B2 [Source:NCBI gene;Acc:101174159])

HSP 1 Score: 209.149 bits (531), Expect = 4.784e-65
Identity = 111/224 (49.55%), Postives = 163/224 (72.77%), Query Frame = 3

Query:   21 MEIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYVERXXXXXXXXXXXXXXXXXXXXEAKLXXXXXXXXXXNPIDPSQMPDQPPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            M+I PN TIY+NN+N+K+KKEEL+++LYA+FSQFG+IL ++  K ++++GQAFV+F+ + +AT A+  +Q FPFY+KPMRIQY+KTDS++I+K KGT+ ++ KK  ++   ++      K  A              +  SQ+PD PPN ILFL NLPE++NE+M+S+LFN+F G+KEVR+VP + DIAFVEF+++  +G AK  LQ F+I     ++ITFAKK
Sbjct:    1 MDIRPNYTIYINNINDKVKKEELKRSLYALFSQFGQILSVVALKTMRMRGQAFVVFKELAAATNALRQLQGFPFYNKPMRIQYAKTDSEVIAKMKGTFGDKEKKKEKKKKAQELAANAAKKPAV------------SLCSSQVPDNPPNHILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGKHDIAFVEFESDTQAGVAKDALQGFRITATCAMKITFAKK 212

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Medaka
Match: snrpa (small nuclear ribonucleoprotein polypeptide A [Source:NCBI gene;Acc:101155621])

HSP 1 Score: 137.502 bits (345), Expect = 4.937e-37
Identity = 73/98 (74.49%), Postives = 90/98 (91.84%), Query Frame = 3

Query:   24 EIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYV 317
            E+ PN+TIY+NNLNEKIKK+EL+K+LYA+FSQFG+IL+I+V++ LK+KGQAFVIF+ I SA+ A+ SMQ FPFYDKPMRIQYSKTDSDII+K KGTYV
Sbjct:    5 EVRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARTLKMKGQAFVIFKEINSASNALRSMQGFPFYDKPMRIQYSKTDSDIIAKMKGTYV 102

HSP 2 Score: 120.168 bits (300), Expect = 1.486e-30
Identity = 57/89 (64.04%), Postives = 69/89 (77.53%), Query Frame = 3

Query:  438 PSQMPDQ----PPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            P QMP Q    PPN ILFLTNLPE++NELM+S+LFN+F G+KEVR+VP R DIAFVEFDNE  +G A+  LQ FKI   H ++I+FAKK
Sbjct:  184 PGQMPQQVAENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDSLQGFKITQTHAMKISFAKK 272

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Medaka
Match: snrpa (small nuclear ribonucleoprotein polypeptide A [Source:NCBI gene;Acc:101155621])

HSP 1 Score: 137.502 bits (345), Expect = 4.937e-37
Identity = 73/98 (74.49%), Postives = 90/98 (91.84%), Query Frame = 3

Query:   24 EIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYXXXXXXXXXXXXGTYV 317
            E+ PN+TIY+NNLNEKIKK+EL+K+LYA+FSQFG+IL+I+V++ LK+KGQAFVIF+ I SA+ A+ SMQ FPFYDKPMRIQYSKTDSDII+K KGTYV
Sbjct:    5 EVRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARTLKMKGQAFVIFKEINSASNALRSMQGFPFYDKPMRIQYSKTDSDIIAKMKGTYV 102

HSP 2 Score: 120.168 bits (300), Expect = 1.486e-30
Identity = 57/89 (64.04%), Postives = 69/89 (77.53%), Query Frame = 3

Query:  438 PSQMPDQ----PPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            P QMP Q    PPN ILFLTNLPE++NELM+S+LFN+F G+KEVR+VP R DIAFVEFDNE  +G A+  LQ FKI   H ++I+FAKK
Sbjct:  184 PGQMPQQVAENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDSLQGFKITQTHAMKISFAKK 272

[Close]

BLAST of U2 small nuclear ribonucleoprotein B vs. Planmine SMEST
Match: SMESG000017078.1 (SMESG000017078.1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.611e-22
Identity = 40/83 (48.19%), Postives = 66/83 (79.52%), Query Frame = 3

Query:   21 MEIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLKGQAFVIFENIKSATEAINSMQSFPFYDKPMRIQY 269
            ME  PN+T+YVNNLN+K+KK +L+K+LY +F Q+G I++I+ S+   ++GQAF+I+++I S+T A  ++Q++  +DKPM+I Y
Sbjct:    1 MENRPNHTLYVNNLNDKVKKPDLKKSLYYLFGQYGGIVDIIASRAPVMRGQAFIIYKDIVSSTTAFRALQNYQLFDKPMKIHY 83

HSP 2 Score: 71.2478 bits (173), Expect = 8.578e-14
Identity = 30/78 (38.46%), Postives = 51/78 (65.38%), Query Frame = 3

Query:  459 PPNKILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNSGRAKSQLQNFKIKPNHHIRITFAKK 692
            P    LF++NLP+++ + M+++LF++F G++EVR    R D+AFVE++ E  +  AK     F+I  NH ++I +A K
Sbjct:  160 PTCNTLFVSNLPQETTKAMLTMLFSQFKGFREVRHSAERYDVAFVEYETERQAKDAKESYDGFQIVLNHRMKIEYANK 237

The following BLAST results are available for this feature:

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Human
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Celegans
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Fly
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Zebrafish
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Xenopus
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Mouse
BLAST of U2 small nuclear ribonucleoprotein B vs. UniProt/SwissProt
BLAST of U2 small nuclear ribonucleoprotein B vs. TrEMBL
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Cavefish
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Sea Lamprey
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Yeast
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Nematostella
BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Medaka
BLAST of U2 small nuclear ribonucleoprotein B vs. Planmine SMEST

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
SNRPB2	7.454e-68	52.89	small nuclear ribonucleoprotein polypeptide B2 [So...	[more]
SNRPB2	7.454e-68	52.89	small nuclear ribonucleoprotein polypeptide B2 [So...	[more]
SNRPA	1.927e-39	73.00	small nuclear ribonucleoprotein polypeptide A [Sou...	[more]
SNRPA	2.264e-39	73.00	small nuclear ribonucleoprotein polypeptide A [Sou...	[more]
SNRPA	1.189e-37	73.00	small nuclear ribonucleoprotein polypeptide A [Sou...	[more]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 3


Match Name	E-value	Identity	Description
rnp-2	5.037e-56	47.11	RNP (RRM RNA binding domain) containing [Source:U...	[more]
rnp-3	3.334e-49	41.99	RNP (RRM RNA binding domain) containing [Source:U...	[more]
rnp-3	3.845e-34	38.81	RNP (RRM RNA binding domain) containing [Source:U...	[more]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 3


Match Name	E-value	Identity	Description
snf	4.859e-61	57.14	gene:FBgn0003449 transcript:FBtr0070748	[more]
CG44249	1.914e-6	34.15	gene:FBgn0265184 transcript:FBtr0339103	[more]
Sf3b6	3.666e-6	32.05	gene:FBgn0035692 transcript:FBtr0077015	[more]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
snrpb2	2.455e-63	49.56	small nuclear ribonucleoprotein polypeptide B2 [So...	[more]
snrpb2	2.455e-63	49.56	small nuclear ribonucleoprotein polypeptide B2 [So...	[more]
snrpa	2.383e-37	73.00	small nuclear ribonucleoprotein polypeptide A [Sou...	[more]
snrpa	2.383e-37	73.00	small nuclear ribonucleoprotein polypeptide A [Sou...	[more]
snrpa	2.532e-36	73.00	small nuclear ribonucleoprotein polypeptide A [Sou...	[more]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 4


Match Name	E-value	Identity	Description
slc17a6	1.280e-64	50.00	solute carrier family 17 member 6 [Source:Xenbase;...	[more]
slc17a6	4.886e-63	48.72	solute carrier family 17 member 6 [Source:Xenbase;...	[more]
tubgcp5	1.461e-39	76.00	tubulin gamma complex associated protein 5 [Source...	[more]
tubgcp5	1.474e-39	76.00	tubulin gamma complex associated protein 5 [Source...	[more]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Snrpb2	1.788e-68	52.00	U2 small nuclear ribonucleoprotein B [Source:MGI S...	[more]
Snrpa	7.103e-37	73.96	small nuclear ribonucleoprotein polypeptide A [Sou...	[more]
Snrpa	1.815e-36	72.00	small nuclear ribonucleoprotein polypeptide A [Sou...	[more]
Snrpa	1.815e-36	72.00	small nuclear ribonucleoprotein polypeptide A [Sou...	[more]
Snrpa	1.815e-36	72.00	small nuclear ribonucleoprotein polypeptide A [Sou...	[more]

BLAST of U2 small nuclear ribonucleoprotein B vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q9CQI7\|RU2B_MOUSE	1.251e-67	52.00	U2 small nuclear ribonucleoprotein B'' OS=Mus musc...	[more]
sp\|P08579\|RU2B_HUMAN	3.579e-67	52.89	U2 small nuclear ribonucleoprotein B'' OS=Homo sap...	[more]
sp\|P43332\|SNRPA_DROME	4.871e-60	57.14	U1 small nuclear ribonucleoprotein A OS=Drosophila...	[more]
sp\|Q8H1S6\|RU2B2_ARATH	5.350e-53	43.11	U2 small nuclear ribonucleoprotein B'' 2 OS=Arabid...	[more]
sp\|O22922\|RU2B1_ARATH	9.717e-52	42.54	U2 small nuclear ribonucleoprotein B'' OS=Arabidop...	[more]

BLAST of U2 small nuclear ribonucleoprotein B vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0N0U768	1.264e-73	59.31	U2 small nuclear ribonucleoprotein B OS=Melipona q...	[more]
E2C3U3	6.428e-73	58.44	U2 small nuclear ribonucleoprotein B'' OS=Harpegna...	[more]
A0A026VTW3	7.160e-73	58.87	U2 small nuclear ribonucleoprotein B OS=Ooceraea b...	[more]
A0A2A3EE87	8.506e-73	58.44	U2 small nuclear ribonucleoprotein B OS=Apis ceran...	[more]
A0A224Z4L3	5.537e-72	56.77	U2 small nuclear ribonucleoprotein B OS=Rhipicepha...	[more]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 4


Match Name	E-value	Identity	Description
snrpb2	3.066e-65	51.79	small nuclear ribonucleoprotein polypeptide B2 [So...	[more]
snrpb2	3.066e-65	51.79	small nuclear ribonucleoprotein polypeptide B2 [So...	[more]
snrpb2	7.967e-64	49.55	small nuclear ribonucleoprotein polypeptide B2 [So...	[more]
snrpa	1.483e-36	71.00	small nuclear ribonucleoprotein polypeptide A [Sou...	[more]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 2


Match Name	E-value	Identity	Description
ENSPMAT00000004128.1	1.303e-28	65.63	pep scaffold:Pmarinus_7.0:GL493652:2141:4533:1 gen...	[more]
ENSPMAT00000006657.1	3.187e-6	30.77	pep scaffold:Pmarinus_7.0:GL484402:615:2775:1 gene...	[more]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2


Match Name	E-value	Identity	Description
MSL1	8.362e-11	36.36	U2B component of U2 snRNP; involved in splicing, b...	[more]
MUD1	4.769e-6	32.53	U1 snRNP A protein; homolog of human U1-A; involve...	[more]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 3


Match Name	E-value	Identity	Description
EDO47757	2.220e-59	54.02	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO26232	1.312e-6	27.27	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO43995	6.240e-6	27.27	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of U2 small nuclear ribonucleoprotein B vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 4


Match Name	E-value	Identity	Description
snrpa	4.012e-73	59.11	small nuclear ribonucleoprotein polypeptide A [Sou...	[more]
snrpb2	4.784e-65	49.55	small nuclear ribonucleoprotein polypeptide B2 [So...	[more]
snrpa	4.937e-37	74.49	small nuclear ribonucleoprotein polypeptide A [Sou...	[more]
snrpa	4.937e-37	74.49	small nuclear ribonucleoprotein polypeptide A [Sou...	[more]

BLAST of U2 small nuclear ribonucleoprotein B vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1


Match Name	E-value	Identity	Description
SMESG000017078.1	4.611e-22	48.19	SMESG000017078.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30006347 ID=SMED30006347|Name=U2 small nuclear ribonucleoprotein B|organism=Schmidtea mediterranea sexual|type=transcript|length=1389bp
GTTTTATATAAAATTGAATGATGGAAATTGCTCCGAATAATACAATATAT
GTCAATAACCTGAATGAAAAAATTAAAAAGGAAGAACTAAGAAAGGCTTT
ATATGCAGTGTTTTCGCAATTTGGTAGGATTTTGGAAATTATGGTTAGTA
AGCGATTAAAATTGAAAGGTCAAGCATTTGTTATTTTTGAAAATATTAAA
AGTGCTACTGAAGCTATCAATTCCATGCAAAGTTTTCCATTTTACGACAA
GCCTATGCGTATACAATATTCTAAAACTGATTCTGATATTATATCAAAGA
AAAAAGGAACGTATGTTGAACGACCTAAAAAGAGTCCAGAAGAGTTAGTT
AAAAAGAAGAAAAAGCGTTTGACCATTAAATCTGAAGCTAAATTAAGTAA
ATTTGGAAAAAGTGGTAAAGGTAGTAACCCGATTGATCCTAGTCAAATGC
CGGATCAACCACCAAACAAAATTTTATTTTTAACCAACTTACCTGAAGAT
TCAAATGAATTAATGATAAGTGTGTTGTTTAATAAATTTAATGGTTACAA
GGAAGTGAGAATGGTTCCCAGTCGACCAGATATAGCATTTGTGGAATTCG
ATAATGAAAATAATTCGGGTAGAGCGAAGTCACAGTTACAAAATTTCAAA
ATTAAGCCAAATCACCATATAAGAATAACATTTGCAAAGAAATAATGTTA
TTGGTGTGATTTTGTATAGTCTCTTGTGTATGATGGATTAATAGTTAATG
AATGCAATAAATATTAAAGCTCTCTTTTCTATCCATTATAAAGTCCAGTG
CCTACCAAATTCAGTTGGTTTCACTACTAAATGTGGCGTACAAATTATTC
ACGTAAACGTGTGATCAAAGGATTGCTCAGATGAGGTCTAATATCGATTT
TTAAATAAAATATTCAAAATTCAAGCGGATCTGCATTTGCAGTATATTAA
ATTCCAGAGCTATAATTTAGAAAGTCAAAGGAATTTCAGTTCTGAACTAA
CATGCTTTAAACGGCCAGAGACAACATTTCACTATTTGATTACTTTGATA
TTGAGGATTTATTTACTGGGAATGTTATTCAAATATCGCGCATGTAGAAA
AATATTTAAAGTTTTGTGCATTTATCTTTAATCCACATTGTAAAATTTTT
CCGTTGACAAAAACTTTAATTCTGAGGCAGTAGTTTAAGTGAATGTTTAT
TTTTGAGTTATTTTTGTATTAAGTAGACTAAGGATTGTTAATTGCACAGA
AAATTATATTTTCAGCTGTTGACTATAAAACTTGTTCGTGGTGAGACGAA
ATGTAGGTTGTTTAATGAATTATATATTTTTGATATGAAAAATTAAATGC
TTGTCTGTATTATTAACATGAAATTAAAAAGCAACACAC

protein sequence of SMED30006347-orf-1

>SMED30006347-orf-1 ID=SMED30006347-orf-1|Name=SMED30006347-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=226bp
MMEIAPNNTIYVNNLNEKIKKEELRKALYAVFSQFGRILEIMVSKRLKLK
GQAFVIFENIKSATEAINSMQSFPFYDKPMRIQYSKTDSDIISKKKGTYV
ERPKKSPEELVKKKKKRLTIKSEAKLSKFGKSGKGSNPIDPSQMPDQPPN
KILFLTNLPEDSNELMISVLFNKFNGYKEVRMVPSRPDIAFVEFDNENNS
GRAKSQLQNFKIKPNHHIRITFAKK*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **molecular function**
Term	Definition
GO:0003723	RNA binding
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000028	Category 2 cell
PLANA:0000099	neuron
PLANA:0000429	neoblast
PLANA:0002109	X1 cell

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **cellular component**
Term	Definition
GO:0019013	viral nucleocapsid
GO:0030529	intracellular ribonucleoprotein complex

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 151..220 e-value: 1.8E-8 score: 44.1 coord: 8..82 e-value: 6.1E-13 score: 59.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 152..212 e-value: 5.0E-11 score: 42.3 coord: 9..79 e-value: 4.3E-12 score: 45.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..86 score: 15.579
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 150..224 score: 12.236
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 1..101 e-value: 3.1E-29 score: 103.2
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 143..224 e-value: 8.6E-19 score: 69.4
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 2..224
None	No IPR available	PANTHER	PTHR10501:SF13	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A	coord: 2..224
None	No IPR available	CDD	cd12246	RRM1_U1A_like	coord: 8..85 e-value: 9.75111E-44 score: 139.586
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 5..214