SMED30006345

Overview
NameSMED30006345
Smed IDSMED30006345
Length (bp)1501
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30006345 (SMED30006345) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30006345 (SMED30006345) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30006345

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
parenchymal cellSMED30006345h1SMcG0005206 dd_Smed_v4_22577_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30006345 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.018014:13351..16269 +6004
v31.022168:969..5122 +5411
Homology
[Close]
BLAST of SMED30006345 vs. Planmine SMEST
Match: SMESG000050291.1 (SMESG000050291.1)

HSP 1 Score: 912.909 bits (2358), Expect = 0.000e+0
Identity = 459/464 (98.92%), Postives = 460/464 (99.14%), Query Frame = 2 
Query:   32 MYIYIYSVYLNIFLWLNASYIYKELAGTIADHLGLEFRIYILNGSGIIFYSFDVENNIFVKIDVHRPKPELIVAHNQKIPNKIATMNEICGCSACFNIFMTFKFHLDLSLIDIECDNKSNIILLKNXXXXXXXXXXPRPKSYKSSEKILYIWMGNIGKYIGYSGMKYLPLKAQIFGCLDYIKVDKKYVKLERQEGVSFLNSCDILYNEKVCYKSNCWQNKNSYKMYDCSVASLNTKYCNITFSRHYEKEFDSRKNSERIKLMRIDWIRDQHFMKNYCLLEILLKNGTILMLHIDRHNHLRMNIKHPKTKLLINTNLNKISNSLLVNLDPSNFSVKVSFGEGRVEYRDEMTSEYVIITVGKWQHSNIYPEFLGNISVSIIHNKVIAPFTISSLHPLKSHFKGLHFILFGALSLFVIILLITFTKFGIGPLLRQRFMNIQSKRVLSNPYITELVTTRSNELEILEN 1423
            MYIYIY VYLNIFLWLNASYIYKELAGTIADHLGLEFRIYILNGSGIIFYSFDVENNIFVKIDVHRPKPELIVAHNQKIPNKIATMNEICGCSACFNIFMTFKFHLDLSLIDIECDNKSNIILLKNTTDKD FKFFPRPKSYKSSEKILYIWMGNIGKYIGYSGMKYLPLKAQIFGCLDYIKV+KKYVKLERQEGVSFLNSCDILYNEKVCYKSNCWQNKNSYKMYDCSVASLNTKYCNITFSRHYEKEFDSRKNSERIKLMRIDWIRDQHFMKNYCLLEILLKNGTILMLHIDRHNHLRMNIKHPKTKLLINTNLNKI NSLLVNLDPSNFSVKVSFGEGRVEYRDEMTSEYVIITVGKWQHSNIYPEFLGNISVSIIHNKVIAPFTISSLHPLKSHFK LHFILFGALSLFVIILLITFTKFGIGPLLRQRFMNIQSKRVLSNPYITELVTTRSNELEILEN
Sbjct:    1 MYIYIYLVYLNIFLWLNASYIYKELAGTIADHLGLEFRIYILNGSGIIFYSFDVENNIFVKIDVHRPKPELIVAHNQKIPNKIATMNEICGCSACFNIFMTFKFHLDLSLIDIECDNKSNIILLKNTTDKDSFKFFPRPKSYKSSEKILYIWMGNIGKYIGYSGMKYLPLKAQIFGCLDYIKVNKKYVKLERQEGVSFLNSCDILYNEKVCYKSNCWQNKNSYKMYDCSVASLNTKYCNITFSRHYEKEFDSRKNSERIKLMRIDWIRDQHFMKNYCLLEILLKNGTILMLHIDRHNHLRMNIKHPKTKLLINTNLNKILNSLLVNLDPSNFSVKVSFGEGRVEYRDEMTSEYVIITVGKWQHSNIYPEFLGNISVSIIHNKVIAPFTISSLHPLKSHFKELHFILFGALSLFVIILLITFTKFGIGPLLRQRFMNIQSKRVLSNPYITELVTTRSNELEILEN 464
[Close]
BLAST of SMED30006345 vs. Planmine SMEST
Match: SMESG000050295.1 (SMESG000050295.1)

HSP 1 Score: 723.005 bits (1865), Expect = 0.000e+0
Identity = 368/417 (88.25%), Postives = 384/417 (92.09%), Query Frame = 2 
Query:   38 IYIYSVYLNIFLWLNASYIYKELAGTIADHLGLEFRIYILNGSGIIFYSFDVENNIFVKIDVHRPKPELIVAHNQKIPNKIATMNEICGCSACFNIFMTFKFHLDLSLIDIECDNKSNIILLKNXXXXXXXXXXPRPKSYKSSEKILYIWMGNIGKYIGYSGMKYLPLKAQIFGCLDYIKVDKKYVKLERQEGVSFLNSCDILYNEKVCYKSNCWQNKNSYKMYDCSVASLNTKYCNITFSRHYEKEFDSRKNSERIKLMRIDWIRDQHFMKNYCLLEILLKNGTILMLHIDRHNHLRMNIKHPKTKLLINTNLNKISNSLLVNLDPSNFSVKVSFGEGRVEYRDEMTSEYVIITVGKWQHSNIYPEFLGNISVSIIHNKVIAPFTISSLHPLKSHFKGLH--FILFGALSLFVIIL 1282
            I ++  YLNIFLWLNASYIYKELAGTIADHLGLEFRIYILNGSGIIFYSFDVEN+IFVKIDV RPKPELIVA+NQKIP+KI+TMNEICGCSACFNIFMTFKFHLDLSLIDIEC NKSNIILLKNTTDKD FKFFPRPKSYKSSEKIL+IWMGNIGKYIGYSGMKYLPLKAQIFGCLDYIKVDKKYVKLERQEGVSFLNSCDILYNEKVCYKSNCWQNKNSYKMYDCSVASLNTKYCNITFSRHYEKEFDSRKNSERIKLMRIDWIRDQH MKNYCLLEI+LKNGTILMLHIDRHNHLRMNIKH KTKLLINTNLNKISNSLLVNLDPSNFSVKVSFGEGRVEYRDEMTSEYVIITVGKWQHSNIYPEFLGNIS+       +     SS +P +     L   FI+F  L+ F+I+L
Sbjct:    7 ILLFITYLNIFLWLNASYIYKELAGTIADHLGLEFRIYILNGSGIIFYSFDVENDIFVKIDVDRPKPELIVAYNQKIPSKISTMNEICGCSACFNIFMTFKFHLDLSLIDIECANKSNIILLKNTTDKDSFKFFPRPKSYKSSEKILFIWMGNIGKYIGYSGMKYLPLKAQIFGCLDYIKVDKKYVKLERQEGVSFLNSCDILYNEKVCYKSNCWQNKNSYKMYDCSVASLNTKYCNITFSRHYEKEFDSRKNSERIKLMRIDWIRDQHIMKNYCLLEIILKNGTILMLHIDRHNHLRMNIKHSKTKLLINTNLNKISNSLLVNLDPSNFSVKVSFGEGRVEYRDEMTSEYVIITVGKWQHSNIYPEFLGNISIR------LEMILFSSQNPSRYSILDLKEIFIIFLVLASFLILL 417
[Close]
BLAST of SMED30006345 vs. Planmine SMEST
Match: SMESG000050295.1 (SMESG000050295.1)

HSP 1 Score: 278.1 bits (710), Expect = 6.702e-89
Identity = 142/179 (79.33%), Postives = 151/179 (84.36%), Query Frame = 2 
Query:  752 TFSRHYEKEFDSRKNSERIKLMRIDWIRDQHFMKNYCLLEILLKNGTILMLHIDRHNHLRMNIKHPKTKLLINTNLNKISNSLLVNLDPSNFSVKVSFGEGRVEYRDEMTSEYVIITVGKWQHSNIYPEFLGNISVSIIHNKVIAPFTISSLHPLKSHFKGLH--FILFGALSLFVIIL 1282
             FSRHYEKEFDSRKNSERIKLMRIDWIRDQH MKNYCLLEI+LKNGTILMLHIDRHNHLRMNIKH KTKLLINTNLNKISNSLLVNLDPSNFSVKVSFGEGRVEYRDEMTSEYVIITVGKWQHSNIYPEFLGNIS+       +     SS +P +     L   FI+F  L+ F+I+L
Sbjct:  135 AFSRHYEKEFDSRKNSERIKLMRIDWIRDQHIMKNYCLLEIILKNGTILMLHIDRHNHLRMNIKHSKTKLLINTNLNKISNSLLVNLDPSNFSVKVSFGEGRVEYRDEMTSEYVIITVGKWQHSNIYPEFLGNISIR------LEMILFSSQNPSRYSILDLKEIFIIFLVLASFLILL 307

HSP 2 Score: 236.113 bits (601), Expect = 9.144e-73
Identity = 123/147 (83.67%), Postives = 134/147 (91.16%), Query Frame = 2 
Query:   38 IYIYSVYLNIFLWLNASYIYKELAGTIADHLGLEFRIYILNGSGIIFYSFDVENNIFVKIDVHRPKPELIVAHNQKIPNKIATMNEICGCSACFNIFMTFKFHLDLSLIDIECDNKSNIILLKNXXXXXXXXXXPRP-KSYKSSEKI 475
            I ++  YLNIFLWLNASYIYKELAGTIADHLGLEFRIYILNGSGIIFYSFDVEN+IFVKIDV RPKPELIVA+NQKIP+KI+TMNEICGCSACFNIFMTFKFHLDLSLIDIEC NKSNIILLKNTTDK F + + +   S K+SE+I
Sbjct:    7 ILLFITYLNIFLWLNASYIYKELAGTIADHLGLEFRIYILNGSGIIFYSFDVENDIFVKIDVDRPKPELIVAYNQKIPSKISTMNEICGCSACFNIFMTFKFHLDLSLIDIECANKSNIILLKNTTDKAFSRHYEKEFDSRKNSERI 153
[Close]
BLAST of SMED30006345 vs. Planmine SMEST
Match: SMESG000050289.1 (SMESG000050289.1)

HSP 1 Score: 177.948 bits (450), Expect = 1.096e-49
Identity = 134/484 (27.69%), Postives = 237/484 (48.97%), Query Frame = 2 
Query:   35 YIYIYSVYLNIFLWLNASYIYKELAGTIADHLGLEFRIYILNGSGIIFYSFDVENNIFVKIDVHRPKPELIVAHNQKIPNKIATMNEICGCSACFNIFMTFKFHLDLSLIDIECDNKSNIILLKNXXXXXXXXXXPRPKSYKSSEKILYIWMGNIGKYIGYSGMKYLPLKAQIFGCLDYIKVDKKYVKLERQEGVSFLNSCDILYNEKVCYKSNCWQNKNSYKMYDCSVASLNTKYCNITFSRH--YEKEFDSRKNSERIKLMRIDW-IRDQHFMKNYCLLEILLKNGTILMLHIDRHNHLRMNIKHPKTKLLINTNLNKISN--------SLLVNLDPSNFSVKVSFGEGRVEYRDEMTSEYVIITVGKWQHSNIYPEFLGNISVSI------IHNKVIAPFTISSLHPLKSHFKGLH-----FILFGALSLFVIILLITFTKFGIGPLLRQRFMNIQSKRVLSNPYITELVTTRSNELEILE 1420
            Y    SV L+ F  + + YIY++  G +    G+ F ++I N  G++FY  D +N + ++I+    +  +    N  + ++  T   +C CS C N+++     L    I I C+ ++N++     TD D F  +P P  Y +++   Y WMGNIG + G     YL L +Q+ GCLD    + K +K  ++ G  F + C++LY EKVC +S C  N+  YKMYDCS  S+N K+C    S +   +K +  ++  + +   R+DW +     +K + L+EI LK+ T+L+ +ID   ++ M+  +    +  NT++   S         +LL+ L  S  ++K++     + Y  +   E+V+I +G  Q    +  F G I+         I N     F  S++ P +     L       I+FG +   +I+L+I   K      ++++    + K + +N Y +E V+T S +  +LE
Sbjct:    7 YFLFLSVLLSKFNGMFSEYIYEKFDGNMVSDKGMNFSVFIKNFKGVLFYCVDSKNRLLIQINKKSTETIITFKFNSYVTSEDMTSKRLCKCSNCSNVYLQLSILLQQLEILINCNKQANVVKFNKETDSDEFSEYPTPPDYNNNQTKTYFWMGNIGPFTGSKNKIYLALTSQLSGCLDKFYFNGKNIKF-KKSGKIFQSFCEVLYKEKVCNESRCSNNETHYKMYDCSPLSMNGKHCETILSDYAIVQKSYIRKQRWKEVIYFRLDWQMEVNSKIKRFSLMEIKLKDETLLLFYIDSTRNIVMSTLN----ISANTDIVDFSMKSDLNHRFTLLIILGESETTIKLNDCSNILTYIKKNIFEFVLINIGTIQSDPSFSLFEGKINFQFNPKYWKISNGNSDFFLTSTIIPNRVQPSNLSKYYLCVIVFGGI---IIMLVIILRKCKFRQKMKRQSQKDKWKDIQNNSYESESVSTPSAKNLVLE 482
[Close]
BLAST of SMED30006345 vs. Planmine SMEST
Match: SMESG000050315.1 (SMESG000050315.1)

HSP 1 Score: 169.474 bits (428), Expect = 1.863e-46
Identity = 107/377 (28.38%), Postives = 194/377 (51.46%), Query Frame = 2 
Query:   41 YIYSVYLNIFLWLN---ASYIYKELAGTIADHLGLEFRIYILNGSGIIFYSFDVENNIFVKIDVHRPKPELIVAHNQKIPNKIATMNEICGCSACFNIFMTFKFHLDLSLIDIECDN-KSNIILLKNXXXXXXXXXXPRPKSYKSSEKILYIWMGNIGKYIGYSGMKYLPLKAQIFGCLDYIKVDKKYVKLERQEGVSFLNSCDILYNEKVCYKSNCWQNKNSYKMYDCSVASLNTKYCNITFSRHYEKEFDSRKNSERIKLMRIDWIRDQHFMKNYCLLEILLKNGTILMLHIDRHNHLRMNIKHPKTKLLINTNLNKI----SNSLLVNLDPSNFSVKVSFGEGRVEYRDEMTSEYVIITVGKWQHSNIYPEFLG 1147
            + Y + L   +++N   A+Y Y+++ G +       F I++   SG++ Y+ D  NN+ ++I+    K  + +  N  I   +A   E+CGCS+C +I+ TF      +++ I+C+   S + + K     + F  +P P  YKS++   ++WMGNIG + G + M Y PLK Q+ GCLD   ++ K ++  +  G  F  +C   YN+ +C  ++C Q+   Y M DCS++SLN +YC+    R    E  S K + ++ L+R++W+ +   + + CL+E+ LKNG I++ H+D+    +M I + + KL   T +  +    +N L  N   +   +K+   E    +   +  E  ++  GK        +F G
Sbjct:    3 FFYEIQLTSIIFINVIYANYTYQDMEGNLIREGSFNFSIFVKQFSGLVLYAIDSFNNLLIEIE----KDTVFIKLNDTI--SLANSQELCGCSSCKHIYATFILKTRDNILTIKCNGYTSTLAVGKIKKKANQFFGYPIPNGYKSNKT--FLWMGNIGLFKGLNDMIYFPLKGQLIGCLDNFFINGKLIQF-KSYGSQFSFTCPKGYNQTICNGNHCSQSTVFYDMNDCSISSLNGRYCSTNL-RSLNTEHSSIKLNHKLSLIRLEWMTNDD-LADPCLMEMKLKNGNIILFHLDKTQRFKMIINNKQAKLFHTTQMKTLPINSTNILAANFTGTEILIKLYSEENINSFVLPLVDEVQLVNFGKSSMKGYCNDFSG 368
The following BLAST results are available for this feature:
BLAST of SMED30006345 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006345 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006345 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006345 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006345 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006345 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006345 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006345 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006345 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006345 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006345 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006345 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006345 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006345 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000050291.10.000e+098.92SMESG000050291.1[more]
SMESG000050295.10.000e+088.25SMESG000050295.1[more]
SMESG000050295.16.702e-8979.33SMESG000050295.1[more]
SMESG000050289.11.096e-4927.69SMESG000050289.1[more]
SMESG000050315.11.863e-4628.38SMESG000050315.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30006345 ID=SMED30006345|Name=SMED30006345|organism=Schmidtea mediterranea sexual|type=transcript|length=1501bp
GATGAAATCAAATGAAAATTTACATTTATAGATGTATATATACATATACT
CAGTTTATTTAAACATTTTTTTGTGGCTGAATGCAAGTTATATCTATAAA
GAATTGGCCGGAACAATTGCTGATCATTTGGGACTCGAATTTAGAATTTA
TATTCTGAATGGATCTGGGATAATCTTCTATAGTTTTGACGTGGAGAACA
ATATTTTTGTAAAAATTGATGTCCACAGGCCGAAACCGGAATTGATAGTT
GCGCATAACCAAAAAATTCCTAACAAAATTGCAACAATGAATGAAATTTG
TGGATGCTCGGCTTGTTTTAATATTTTCATGACTTTTAAATTTCACTTGG
ATTTATCTCTAATTGATATCGAATGCGATAATAAATCAAATATTATTTTA
TTAAAAAATACTACTGACAAAGATTTTTTCAAATTCTTTCCCAGGCCGAA
ATCTTATAAAAGTTCTGAAAAAATATTATATATTTGGATGGGAAATATCG
GGAAATATATTGGTTATAGCGGGATGAAATATCTGCCATTGAAAGCGCAG
ATATTTGGATGTTTGGATTATATAAAAGTTGATAAGAAATATGTGAAATT
GGAACGTCAAGAAGGAGTAAGCTTTCTCAATTCGTGTGACATTCTGTATA
ATGAAAAGGTTTGCTACAAAAGTAATTGCTGGCAAAACAAGAATTCATAT
AAAATGTATGACTGCTCCGTCGCATCATTAAATACTAAATATTGCAATAT
TACCTTCAGTAGACATTATGAAAAAGAGTTTGATAGTAGAAAGAATTCAG
AAAGAATAAAATTGATGCGAATAGATTGGATAAGAGACCAACATTTCATG
AAGAATTATTGTTTATTAGAAATTCTATTAAAGAATGGTACAATTCTGAT
GTTGCACATTGATCGACATAACCATTTAAGGATGAACATTAAACATCCTA
AAACAAAACTTTTAATAAATACCAATTTAAACAAAATATCGAATAGCTTA
TTAGTCAACTTAGATCCATCCAATTTCTCTGTGAAGGTATCCTTTGGAGA
AGGAAGGGTTGAATATCGTGATGAGATGACCTCGGAATATGTAATTATTA
CTGTAGGGAAATGGCAGCACTCAAATATTTATCCAGAATTTCTAGGAAAT
ATTAGTGTCTCAATTATTCATAATAAAGTAATCGCTCCTTTCACTATAAG
CTCACTTCATCCGCTGAAGTCACATTTCAAGGGACTTCATTTCATTCTAT
TTGGAGCGCTTTCACTTTTTGTTATAATCCTATTAATAACTTTTACAAAA
TTTGGAATCGGGCCTCTTTTGAGACAAAGGTTCATGAATATTCAGTCGAA
AAGGGTTTTGTCGAATCCTTATATCACCGAATTGGTTACAACCCGGTCTA
ATGAGTTAGAGATTTTGGAAAATCTCAGAACATTGTAATTGAAAATTCGC
ATTTGACTTCTTCATATTTTATTTTTGAATGAAAATTTACGTTTTGAATT
A
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protein sequence of SMED30006345-orf-1

>SMED30006345-orf-1 ID=SMED30006345-orf-1|Name=SMED30006345-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=469bp
MYIYIYSVYLNIFLWLNASYIYKELAGTIADHLGLEFRIYILNGSGIIFY
SFDVENNIFVKIDVHRPKPELIVAHNQKIPNKIATMNEICGCSACFNIFM
TFKFHLDLSLIDIECDNKSNIILLKNTTDKDFFKFFPRPKSYKSSEKILY
IWMGNIGKYIGYSGMKYLPLKAQIFGCLDYIKVDKKYVKLERQEGVSFLN
SCDILYNEKVCYKSNCWQNKNSYKMYDCSVASLNTKYCNITFSRHYEKEF
DSRKNSERIKLMRIDWIRDQHFMKNYCLLEILLKNGTILMLHIDRHNHLR
MNIKHPKTKLLINTNLNKISNSLLVNLDPSNFSVKVSFGEGRVEYRDEMT
SEYVIITVGKWQHSNIYPEFLGNISVSIIHNKVIAPFTISSLHPLKSHFK
GLHFILFGALSLFVIILLITFTKFGIGPLLRQRFMNIQSKRVLSNPYITE
LVTTRSNELEILENLRTL*
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InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 405..427