SMED30006290

Overview
NameSMED30006290
Smed IDSMED30006290
Length (bp)1158
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30006290 (SMED30006290) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30006290 (SMED30006290) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30006290 (SMED30006290) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30006290 (SMED30006290) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30006290

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 5

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
protonephridiaSMED30006290SMESG000072418.1 dd_Smed_v4_1561_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
neuronSMED30006290SMESG000072418.1 dd_Smed_v4_1561_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30006290SMESG000072418.1 dd_Smed_v4_1561_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
protonephridiaSMED30006290SMESG000072418.1 dd_Smed_v6_1561_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30006290SMESG000072418.1 dd_Smed_v6_1561_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30006290 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.000935:80265..86277 -3556
Homology
BLAST of SMED30006290 vs. TrEMBL
Match: A0A564XXJ3 (Uncharacterized protein OS=Hymenolepis diminuta OX=6216 GN=WMSIL1_LOCUS496 PE=4 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.168e-20
Identity = 74/258 (28.68%), Postives = 119/258 (46.12%), Query Frame = 1
Query:  298 EKGCVGCMRSSPVASMLGLITILFGIGAFSGGLIIYWKSVNKIINYETYLP-IQYIMYGTVSIVVVYSMLCYLLAALSSGHNRKRFFEGSKKAKIGRCFTIFNIFCLMITSLLWILVSCVAAYCLIVTCFIHNRINMS----SNQSNSI------------------------------------DLSYYTL------------INQTVKIENDAIPEIFLSISCVTGGSLVIVMGFIHLLCCSAMNFVRLSEERYYD 912
            E  C  C+RSSP+AS+L +I +  G  AF  G I   K   +++  +   P + Y +Y  V    +++++ Y++ A+SSG N KR FEG++    GRC     I CL+   L W LVSC+  Y ++ + F+  R +      +N+++S                                     DLSYY L             + + K+ N   P IF+ ++ +  GSL+ ++ +  L C  AMN+ RL E RYY+
Sbjct:   13 ESSCTRCLRSSPLASLLLMILVFLGGTAFGVGTIYGRKFFYELLEVDHLFPYMDYTVYAIVGATGLFAIIVYIICAVSSGWNAKRCFEGTRATSCGRCMNATLIVCLISAVLFWTLVSCLLTYPIMSSAFLLYRNDGPARSVTNEASSTVRTARQIEPRTAPSAGLDVDPSEVIASYFTCDPTKADLSYYGLYGTDGKPLMLDTTDLSTKLRN---PLIFICVAFL--GSLITMLAYFLLTCSVAMNYARLKELRYYE 265          
BLAST of SMED30006290 vs. TrEMBL
Match: A0A4S2LXA4 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_005367 PE=4 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.322e-20
Identity = 48/135 (35.56%), Postives = 82/135 (60.74%), Query Frame = 1
Query:  295 AEKGCVGCMRSSPVASMLGLITILFGIGAFSGGLIIYWKSVNKIINYETYLP-IQYIMYGTVSIVVVYSMLCYLLAALSSGHNRKRFFEGSKKAKIGRCFTIFNIFCLMITSLLWILVSCVAAYCLIVTCFIHNR 696
             E  C+ C+RSSP+AS+LG I +L G GAF G  I   + ++ +++     P ++Y++YG V    +++ L YL+ A+SSG N K+ FE ++K+  GRC  + +I C++   LLW  + C+ +Y +I    + +R
Sbjct:    7 GENSCIRCLRSSPIASLLGFIAVLIGGGAFGGATIFARRFLDDMLSAPHLFPCLEYVIYGLVGATGLFAALAYLVCAISSGRNAKQCFESTRKSACGRCCNMLSIICVVFGVLLWTAIICLMSYSVISFALLMHR 141          
BLAST of SMED30006290 vs. TrEMBL
Match: A0A4S2LYM5 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_005367 PE=4 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.113e-20
Identity = 48/135 (35.56%), Postives = 82/135 (60.74%), Query Frame = 1
Query:  295 AEKGCVGCMRSSPVASMLGLITILFGIGAFSGGLIIYWKSVNKIINYETYLP-IQYIMYGTVSIVVVYSMLCYLLAALSSGHNRKRFFEGSKKAKIGRCFTIFNIFCLMITSLLWILVSCVAAYCLIVTCFIHNR 696
             E  C+ C+RSSP+AS+LG I +L G GAF G  I   + ++ +++     P ++Y++YG V    +++ L YL+ A+SSG N K+ FE ++K+  GRC  + +I C++   LLW  + C+ +Y +I    + +R
Sbjct:    7 GENSCIRCLRSSPIASLLGFIAVLIGGGAFGGATIFARRFLDDMLSAPHLFPCLEYVIYGLVGATGLFAALAYLVCAISSGRNAKQCFESTRKSACGRCCNMLSIICVVFGVLLWTAIICLMSYSVISFALLMHR 141          
BLAST of SMED30006290 vs. TrEMBL
Match: A0A075AJN6 (Uncharacterized protein OS=Opisthorchis viverrini OX=6198 GN=T265_00578 PE=4 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.139e-18
Identity = 46/135 (34.07%), Postives = 81/135 (60.00%), Query Frame = 1
Query:  295 AEKGCVGCMRSSPVASMLGLITILFGIGAFSGGLIIYWKSVNKIINYETYLP-IQYIMYGTVSIVVVYSMLCYLLAALSSGHNRKRFFEGSKKAKIGRCFTIFNIFCLMITSLLWILVSCVAAYCLIVTCFIHNR 696
             E  C+ C+RSSP+AS+LG I +L G GAF G  I   + ++ +++     P ++Y++YG +    +++ L Y + A+SSG N K+ FE ++K+  GRC  + +I C++   LLW  + C+ +Y +I    + +R
Sbjct:    7 GENSCIRCLRSSPIASLLGFIAVLIGGGAFGGATIFARRFLDDMLSAPHLFPCLEYVVYGLMGATGLFAALAYFVCAISSGRNAKQCFESTRKSICGRCCNMLSIICVVFGILLWTAIICLMSYSVISFALLMHR 141          
BLAST of SMED30006290 vs. TrEMBL
Match: A0A1S8WJU6 (Uncharacterized protein (Fragment) OS=Opisthorchis viverrini OX=6198 GN=X801_09492 PE=4 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 4.796e-18
Identity = 46/134 (34.33%), Postives = 81/134 (60.45%), Query Frame = 1
Query:  298 EKGCVGCMRSSPVASMLGLITILFGIGAFSGGLIIYWKSVNKIINYETYLP-IQYIMYGTVSIVVVYSMLCYLLAALSSGHNRKRFFEGSKKAKIGRCFTIFNIFCLMITSLLWILVSCVAAYCLIVTCFIHNR 696
            E  C+ C+RSSP+AS+LG I +L G GAF G  I   + ++ +++     P ++Y++YG +    +++ L Y + A+SSG N K+ FE ++K+  GRC  + +I C++   LLW  + C+ +Y +I    + +R
Sbjct:    1 ENSCIRCLRSSPIASLLGFIAVLIGGGAFGGATIFARRFLDDMLSAPHLFPCLEYVVYGLMGATGLFAALAYFVCAISSGRNAKQCFESTRKSICGRCCNMLSIICVVFGILLWTAIICLMSYSVISFALLMHR 134          
BLAST of SMED30006290 vs. Planmine SMEST
Match: SMESG000072418.1 (SMESG000072418.1)

HSP 1 Score: 459.914 bits (1182), Expect = 2.342e-164
Identity = 226/227 (99.56%), Postives = 227/227 (100.00%), Query Frame = 1
Query:  280 MVEIYAEKGCVGCMRSSPVASMLGLITILFGIGAFSGGLIIYWKSVNKIINYETYLPIQYIMYGTVSIVVVYSMLCYLLAALSSGHNRKRFFEGSKKAKIGRCFTIFNIFCLMITSLLWILVSCVAAYCLIVTCFIHNRINMSSNQSNSIDLSYYTLINQTVKIENDAIPEIFLSISCVTGGSLVIVMGFIHLLCCSAMNFVRLSEERYYDDFSATQIKSEHVLSAF 960
            MVEIYAEKGCVGCMRSSPVASMLGLITILFGIGAFSGGL+IYWKSVNKIINYETYLPIQYIMYGTVSIVVVYSMLCYLLAALSSGHNRKRFFEGSKKAKIGRCFTIFNIFCLMITSLLWILVSCVAAYCLIVTCFIHNRINMSSNQSNSIDLSYYTLINQTVKIENDAIPEIFLSISCVTGGSLVIVMGFIHLLCCSAMNFVRLSEERYYDDFSATQIKSEHVLSAF
Sbjct:    1 MVEIYAEKGCVGCMRSSPVASMLGLITILFGIGAFSGGLVIYWKSVNKIINYETYLPIQYIMYGTVSIVVVYSMLCYLLAALSSGHNRKRFFEGSKKAKIGRCFTIFNIFCLMITSLLWILVSCVAAYCLIVTCFIHNRINMSSNQSNSIDLSYYTLINQTVKIENDAIPEIFLSISCVTGGSLVIVMGFIHLLCCSAMNFVRLSEERYYDDFSATQIKSEHVLSAF 227          
BLAST of SMED30006290 vs. Planmine SMEST
Match: SMESG000072418.1 (SMESG000072418.1)

HSP 1 Score: 446.047 bits (1146), Expect = 2.622e-158
Identity = 219/221 (99.10%), Postives = 221/221 (100.00%), Query Frame = 1
Query:  298 EKGCVGCMRSSPVASMLGLITILFGIGAFSGGLIIYWKSVNKIINYETYLPIQYIMYGTVSIVVVYSMLCYLLAALSSGHNRKRFFEGSKKAKIGRCFTIFNIFCLMITSLLWILVSCVAAYCLIVTCFIHNRINMSSNQSNSIDLSYYTLINQTVKIENDAIPEIFLSISCVTGGSLVIVMGFIHLLCCSAMNFVRLSEERYYDDFSATQIKSEHVLSAF 960
            +KGCVGCMRSSPVASMLGLITILFGIGAFSGGL+IYWKSVNKIINYETYLPIQYIMYGTVSIVVVYSMLCYLLAALSSGHNRKRFFEGSKKAKIGRCFTIFNIFCLMITSLLWILVSCVAAYCLIVTCFIHNRINMSSNQSNSIDLSYYTLINQTVKIENDAIPEIFLSISCVTGGSLVIVMGFIHLLCCSAMNFVRLSEERYYDDFSATQIKSEHVLSAF
Sbjct:   47 KKGCVGCMRSSPVASMLGLITILFGIGAFSGGLVIYWKSVNKIINYETYLPIQYIMYGTVSIVVVYSMLCYLLAALSSGHNRKRFFEGSKKAKIGRCFTIFNIFCLMITSLLWILVSCVAAYCLIVTCFIHNRINMSSNQSNSIDLSYYTLINQTVKIENDAIPEIFLSISCVTGGSLVIVMGFIHLLCCSAMNFVRLSEERYYDDFSATQIKSEHVLSAF 267          
BLAST of SMED30006290 vs. Planmine SMEST
Match: SMESG000072418.1 (SMESG000072418.1)

HSP 1 Score: 433.721 bits (1114), Expect = 3.034e-154
Identity = 213/214 (99.53%), Postives = 214/214 (100.00%), Query Frame = 1
Query:  319 MRSSPVASMLGLITILFGIGAFSGGLIIYWKSVNKIINYETYLPIQYIMYGTVSIVVVYSMLCYLLAALSSGHNRKRFFEGSKKAKIGRCFTIFNIFCLMITSLLWILVSCVAAYCLIVTCFIHNRINMSSNQSNSIDLSYYTLINQTVKIENDAIPEIFLSISCVTGGSLVIVMGFIHLLCCSAMNFVRLSEERYYDDFSATQIKSEHVLSAF 960
            MRSSPVASMLGLITILFGIGAFSGGL+IYWKSVNKIINYETYLPIQYIMYGTVSIVVVYSMLCYLLAALSSGHNRKRFFEGSKKAKIGRCFTIFNIFCLMITSLLWILVSCVAAYCLIVTCFIHNRINMSSNQSNSIDLSYYTLINQTVKIENDAIPEIFLSISCVTGGSLVIVMGFIHLLCCSAMNFVRLSEERYYDDFSATQIKSEHVLSAF
Sbjct:    1 MRSSPVASMLGLITILFGIGAFSGGLVIYWKSVNKIINYETYLPIQYIMYGTVSIVVVYSMLCYLLAALSSGHNRKRFFEGSKKAKIGRCFTIFNIFCLMITSLLWILVSCVAAYCLIVTCFIHNRINMSSNQSNSIDLSYYTLINQTVKIENDAIPEIFLSISCVTGGSLVIVMGFIHLLCCSAMNFVRLSEERYYDDFSATQIKSEHVLSAF 214          
The following BLAST results are available for this feature:
BLAST of SMED30006290 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006290 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006290 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006290 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006290 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006290 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006290 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006290 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A564XXJ34.168e-2028.68Uncharacterized protein OS=Hymenolepis diminuta OX... [more]
A0A4S2LXA45.322e-2035.56Uncharacterized protein OS=Opisthorchis felineus O... [more]
A0A4S2LYM59.113e-2035.56Uncharacterized protein OS=Opisthorchis felineus O... [more]
A0A075AJN63.139e-1834.07Uncharacterized protein OS=Opisthorchis viverrini ... [more]
A0A1S8WJU64.796e-1834.33Uncharacterized protein (Fragment) OS=Opisthorchis... [more]
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BLAST of SMED30006290 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006290 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006290 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006290 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006290 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006290 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000072418.12.342e-16499.56SMESG000072418.1[more]
SMESG000072418.12.622e-15899.10SMESG000072418.1[more]
SMESG000072418.13.034e-15499.53SMESG000072418.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30006290 ID=SMED30006290|Name=SMED30006290|organism=Schmidtea mediterranea sexual|type=transcript|length=1158bp
CACAATCCAATGAGGAAATTAAAATGAATTATTAACAAAATTACTTAACC
GGTAATTTGTCGAATATTAATTAACGATCAGTTTTTCACTACAAATTCAT
ATTCGTTTCGTTGTATCTAATTTGACATTAAATTTACTGCTATTGTTTCA
ATATTACCCGTTGAATCTGTAGAATTGTGTGCAATGAAAAATATTATATT
TGTGTCAAACCTTTGACATTCGATTCAATTTTATTTCTTAAATTATACCA
ACAGAAATATTTGCTAAATTTATTAAAACATGGTCGAAATCTACGCCGAA
AAAGGATGCGTAGGTTGTATGAGAAGCTCTCCTGTTGCATCAATGTTGGG
ACTCATAACGATTTTGTTTGGAATCGGTGCTTTTAGTGGAGGATTGATCA
TTTATTGGAAATCAGTCAACAAGATAATCAATTATGAAACGTATCTCCCA
ATTCAATACATAATGTATGGAACTGTTTCAATTGTTGTGGTCTATTCTAT
GTTATGCTATTTATTAGCAGCCTTGTCTTCAGGTCATAACCGAAAACGGT
TTTTTGAAGGATCTAAAAAAGCAAAAATTGGCCGCTGTTTTACAATATTT
AATATTTTCTGTTTAATGATAACTTCACTACTGTGGATTCTGGTGTCCTG
TGTTGCGGCTTATTGTTTGATAGTAACGTGTTTCATTCATAACCGCATTA
ATATGTCAAGCAACCAATCGAATTCAATAGATCTCTCGTATTATACTCTT
ATAAATCAAACCGTGAAAATTGAAAACGATGCCATCCCGGAAATTTTTCT
TTCAATTTCATGCGTGACGGGAGGCTCACTGGTGATCGTTATGGGATTTA
TACACTTATTGTGCTGTTCAGCAATGAATTTCGTTCGACTCTCGGAAGAG
CGATATTACGACGACTTCTCGGCAACTCAAATTAAATCTGAACATGTTCT
CTCAGCCTTCTAAATCTCCTATCTGGATATTATTCATATTTTATTTGATT
ACAGAATATTGTATATTGTCTGTGATTAAATTTTATTATTGTTTTTGAAA
TCAAGAATAAAACTAATTGAAAACTATTTGTTGCACTGGTAACCTATTTT
TATTCAGTCTGTTTTGGCATTATAAATTGTCATTAAATTTTTTGACCGAA
GATAAAAA
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protein sequence of SMED30006290-orf-1

>SMED30006290-orf-1 ID=SMED30006290-orf-1|Name=SMED30006290-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=228bp
MVEIYAEKGCVGCMRSSPVASMLGLITILFGIGAFSGGLIIYWKSVNKII
NYETYLPIQYIMYGTVSIVVVYSMLCYLLAALSSGHNRKRFFEGSKKAKI
GRCFTIFNIFCLMITSLLWILVSCVAAYCLIVTCFIHNRINMSSNQSNSI
DLSYYTLINQTVKIENDAIPEIFLSISCVTGGSLVIVMGFIHLLCCSAMN
FVRLSEERYYDDFSATQIKSEHVLSAF*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000020protonephridia
PLANA:0000099neuron
PLANA:0003116parenchymal cell
Vocabulary: INTERPRO
TermDefinition
IPR001614Myelin_PLP
Vocabulary: cellular component
TermDefinition
GO:0016021integral component of membrane
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001614Myelin proteolipid protein PLPPANTHERPTHR11683MYELIN PROTEOLIPIDcoord: 8..222
NoneNo IPR availablePANTHERPTHR11683:SF12M6, ISOFORM Fcoord: 8..222
NoneNo IPR availableTMHMMTMhelixcoord: 58..80
NoneNo IPR availableTMHMMTMhelixcoord: 21..43
NoneNo IPR availableTMHMMTMhelixcoord: 172..194
NoneNo IPR availableTMHMMTMhelixcoord: 100..122