40S ribosomal protein S8

Overview
Name40S ribosomal protein S8
Smed IDSMED30006216
Length (bp)728
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of 40S ribosomal protein S8 (SMED30006216) t-SNE clustered cells

Violin plots show distribution of expression levels for 40S ribosomal protein S8 (SMED30006216) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of 40S ribosomal protein S8 (SMED30006216) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for 40S ribosomal protein S8 (SMED30006216) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30006216

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 14

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30006216h1SMcG0011633 SmedASXL_006821SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
pharynxSMED30006216h1SMcG0011633 dd_Smed_v4_156_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
protonephridiaSMED30006216h1SMcG0011633 dd_Smed_v4_156_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30006216h1SMcG0011633 dd_Smed_v4_156_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30006216h1SMcG0011633 dd_Smed_v4_156_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30006216h1SMcG0011633 dd_Smed_v4_156_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30006216h1SMcG0011633 dd_Smed_v4_156_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30006216h1SMcG0011633 dd_Smed_v4_156_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30006216h1SMcG0011633 dd_Smed_v4_156_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30006216h1SMcG0011633 dd_Smed_v4_156_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30006216h1SMcG0011633 dd_Smed_v4_156_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30006216h1SMcG0011633 dd_Smed_v4_156_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gamma neoblastSMED30006216h1SMcG0011633 dd_Smed_v6_156_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30006216h1SMcG0011633 dd_Smed_v6_156_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of 40S ribosomal protein S8 vs. Ensembl Human
Match: RPS8 (ribosomal protein S8 [Source:HGNC Symbol;Acc:HGNC:10441])

HSP 1 Score: 243.432 bits (620), Expect = 3.182e-81
Identity = 133/206 (64.56%), Postives = 156/206 (75.73%), Query Frame = 2 
Query:   68 MGINQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLEPKRIHDVRVRGGNIKKRALRLDHGNFSWSSQAISRKARIIDTVYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLXXXXXXXXXXXXXXXXXXXXXXNIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY 685
            MGI++D+WHKRRKTGG+R   HKKRKYELGRPAANTK+ P+RIH VRVRGGN K RALRLD GNFSW S+  +RK RIID VYNASNNELVRTKTLVKN IV ID+ P +QWYESHY         + + +GA+ T EE  I N+KRS     KY+ R+K    ++   L+EQF  G L+ACI+SRPGQ GRADGY+LEGKELEFY
Sbjct:    1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHY------ALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKK--NAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFY 198
[Close]
BLAST of 40S ribosomal protein S8 vs. Ensembl Human
Match: AC270156.1 (pep chromosome:GRCh38:CHR_HG2365_PATCH:21156147:21156770:-1 gene:ENSG00000288164.1 transcript:ENST00000672092.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AC270156.1)

HSP 1 Score: 205.297 bits (521), Expect = 3.898e-66
Identity = 121/206 (58.74%), Postives = 139/206 (67.48%), Query Frame = 2 
Query:   68 MGINQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLEPKRIHDVRVRGGNIKKRALRLDHGNFSWSSQAISRKARIIDTVYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLXXXXXXXXXXXXXXXXXXXXXXNIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY 685
            M I+ D+WHKR KT  +R   HKKRKYELG PAANTK  P+RIH VRV GGN K  ALRLD  NFSW S+  + K  IID VYNASNNELVR KTLVKN IV ID+   +QWYESHY         +   +GA+ T EE  I N+KRS     KY  R+K    ++   L EQF  G L+ACI+SRPGQ GRADGY+LEGKELEFY
Sbjct:    1 MDISWDNWHKRHKTRDKRKPYHKKRKYELGHPAANTKTGPRRIHTVRVWGGNKKYCALRLDVRNFSWGSECCAHKTTIIDVVYNASNNELVRPKTLVKNCIVLIDSTLYRQWYESHY------APPLGCKKGAKLTPEEEEILNKKRSKKIQKKYHERKK--NAKISSLLGEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFY 198
[Close]
BLAST of 40S ribosomal protein S8 vs. Ensembl Human
Match: AC270156.1 (pep chromosome:GRCh38:CHR_HG2365_PATCH:21156147:21156770:-1 gene:ENSG00000288164.1 transcript:ENST00000671913.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AC270156.1)

HSP 1 Score: 205.297 bits (521), Expect = 3.898e-66
Identity = 121/206 (58.74%), Postives = 139/206 (67.48%), Query Frame = 2 
Query:   68 MGINQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLEPKRIHDVRVRGGNIKKRALRLDHGNFSWSSQAISRKARIIDTVYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLXXXXXXXXXXXXXXXXXXXXXXNIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY 685
            M I+ D+WHKR KT  +R   HKKRKYELG PAANTK  P+RIH VRV GGN K  ALRLD  NFSW S+  + K  IID VYNASNNELVR KTLVKN IV ID+   +QWYESHY         +   +GA+ T EE  I N+KRS     KY  R+K    ++   L EQF  G L+ACI+SRPGQ GRADGY+LEGKELEFY
Sbjct:    1 MDISWDNWHKRHKTRDKRKPYHKKRKYELGHPAANTKTGPRRIHTVRVWGGNKKYCALRLDVRNFSWGSECCAHKTTIIDVVYNASNNELVRPKTLVKNCIVLIDSTLYRQWYESHY------APPLGCKKGAKLTPEEEEILNKKRSKKIQKKYHERKK--NAKISSLLGEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFY 198
[Close]
BLAST of 40S ribosomal protein S8 vs. Ensembl Human
Match: RPS8 (ribosomal protein S8 [Source:HGNC Symbol;Acc:HGNC:10441])

HSP 1 Score: 204.142 bits (518), Expect = 4.492e-66
Identity = 119/206 (57.77%), Postives = 141/206 (68.45%), Query Frame = 2 
Query:   68 MGINQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLEPKRIHDVRVRGGNIKKRALRLDHGNFSWSSQAISRKARIIDTVYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLXXXXXXXXXXXXXXXXXXXXXXNIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY 685
            MGI++D+WHKRRKTGG+R   HKKRKYELGRPAANTK+ P+RIH VRVRGG                     +RK RIID VYNASNNELVRTKTLVKN IV ID+ P +QWYESHY         + + +GA+ T EE  I N+KRS     KY+ R+K    ++   L+EQF  G L+ACI+SRPGQ GRADGY+LEGKELEFY
Sbjct:    1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG--------------------CTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHY------ALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKK--NAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFY 178
[Close]
BLAST of 40S ribosomal protein S8 vs. Ensembl Celegans
Match: rps-8 (40S ribosomal protein S8 [Source:UniProtKB/Swiss-Prot;Acc:P48156])

HSP 1 Score: 239.965 bits (611), Expect = 3.547e-80
Identity = 124/206 (60.19%), Postives = 150/206 (72.82%), Query Frame = 2 
Query:   68 MGINQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLEPKRIHDVRVRGGNIKKRALRLDHGNFSWSSQAISRKARIIDTVYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLXXXXXXXXXXXXXXXXXXXXXXNIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY 685
            MGI++DSWHKR KTG  +P PHKKRK+ELGRPAANTK+   R+  VR RGGN K RALRLD GNFSW+S+  +RK RI+DT+YNA+NNELVRTKTLVK  I+ +DAAP +QWYE+HY   + +KK  K  E          I N+KRS   M KY  RQK  A  ++  L EQF +G L+A ISS PGQVG+A+GYILEGKEL+FY
Sbjct:    1 MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRLDSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPLARKKNAKLSEEDNA------ILNKKRSHHTMKKYTERQKTAA--VDALLIEQFNTGRLLARISSSPGQVGQANGYILEGKELDFY 198
[Close]
BLAST of 40S ribosomal protein S8 vs. Ensembl Celegans
Match: rps-8 (40S ribosomal protein S8 [Source:UniProtKB/Swiss-Prot;Acc:P48156])

HSP 1 Score: 124.02 bits (310), Expect = 7.182e-36
Identity = 69/125 (55.20%), Postives = 85/125 (68.00%), Query Frame = 2 
Query:  311 VYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLXXXXXXXXXXXXXXXXXXXXXXNIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY 685
            +YNA+NNELVRTKTLVK  I+ +DAAP +QWYE+HY   + +KK  K  E          I N+KRS   M KY  RQK  A  ++  L EQF +G L+A ISS PGQVG+A+GYILEGKEL+FY
Sbjct:    1 MYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPLARKKNAKLSEEDNA------ILNKKRSHHTMKKYTERQKTAA--VDALLIEQFNTGRLLARISSSPGQVGQANGYILEGKELDFY 117
[Close]
BLAST of 40S ribosomal protein S8 vs. Ensembl Celegans
Match: rps-8 (40S ribosomal protein S8 [Source:UniProtKB/Swiss-Prot;Acc:P48156])

HSP 1 Score: 124.02 bits (310), Expect = 7.182e-36
Identity = 69/125 (55.20%), Postives = 85/125 (68.00%), Query Frame = 2 
Query:  311 VYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLXXXXXXXXXXXXXXXXXXXXXXNIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY 685
            +YNA+NNELVRTKTLVK  I+ +DAAP +QWYE+HY   + +KK  K  E          I N+KRS   M KY  RQK  A  ++  L EQF +G L+A ISS PGQVG+A+GYILEGKEL+FY
Sbjct:    1 MYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPLARKKNAKLSEEDNA------ILNKKRSHHTMKKYTERQKTAA--VDALLIEQFNTGRLLARISSSPGQVGQANGYILEGKELDFY 117
[Close]
BLAST of 40S ribosomal protein S8 vs. Ensembl Celegans
Match: rps-8 (40S ribosomal protein S8 [Source:UniProtKB/Swiss-Prot;Acc:P48156])

HSP 1 Score: 124.02 bits (310), Expect = 7.182e-36
Identity = 69/125 (55.20%), Postives = 85/125 (68.00%), Query Frame = 2 
Query:  311 VYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLXXXXXXXXXXXXXXXXXXXXXXNIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY 685
            +YNA+NNELVRTKTLVK  I+ +DAAP +QWYE+HY   + +KK  K  E          I N+KRS   M KY  RQK  A  ++  L EQF +G L+A ISS PGQVG+A+GYILEGKEL+FY
Sbjct:    1 MYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPLARKKNAKLSEEDNA------ILNKKRSHHTMKKYTERQKTAA--VDALLIEQFNTGRLLARISSSPGQVGQANGYILEGKELDFY 117
[Close]
BLAST of 40S ribosomal protein S8 vs. Ensembl Celegans
Match: rps-8 (40S ribosomal protein S8 [Source:UniProtKB/Swiss-Prot;Acc:P48156])

HSP 1 Score: 124.02 bits (310), Expect = 7.182e-36
Identity = 69/125 (55.20%), Postives = 85/125 (68.00%), Query Frame = 2 
Query:  311 VYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLXXXXXXXXXXXXXXXXXXXXXXNIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY 685
            +YNA+NNELVRTKTLVK  I+ +DAAP +QWYE+HY   + +KK  K  E          I N+KRS   M KY  RQK  A  ++  L EQF +G L+A ISS PGQVG+A+GYILEGKEL+FY
Sbjct:    1 MYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPLARKKNAKLSEEDNA------ILNKKRSHHTMKKYTERQKTAA--VDALLIEQFNTGRLLARISSSPGQVGQANGYILEGKELDFY 117
[Close]
BLAST of 40S ribosomal protein S8 vs. Ensembl Fly
Match: RpS8 (gene:FBgn0039713 transcript:FBtr0346159)

HSP 1 Score: 236.113 bits (601), Expect = 1.115e-78
Identity = 125/206 (60.68%), Postives = 153/206 (74.27%), Query Frame = 2 
Query:   68 MGINQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLEPKRIHDVRVRGGNIKKRALRLDHGNFSWSSQAISRKARIIDTVYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLXXXXXXXXXXXXXXXXXXXXXXNIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY 685
            MGI++DS HKRR TGG+R    KKRK+ELGRPAANTKL   R+H VR RGGN K RALRL+ GNF+W+S+ ++RK RI D VYNASNNELVRTKTLVKN+IV IDA P +QWYE+HY+         K+     +  +E ++  +KRS   M KY  RQK    ++EQAL++QF SG ++ACISSRPGQ GR+DGYILEGKELEFY
Sbjct:    1 MGISRDSAHKRRATGGKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRGGNTKLRALRLETGNFAWASEGVARKTRIADVVYNASNNELVRTKTLVKNSIVVIDATPFRQWYEAHYV----LPLGRKRNPKHAQKEDENDVLTKKRSEKVMKKYLERQKYG--KVEQALEDQFTSGRILACISSRPGQCGRSDGYILEGKELEFY 200
[Close]
BLAST of 40S ribosomal protein S8 vs. Ensembl Fly
Match: RpS8 (gene:FBgn0039713 transcript:FBtr0310274)

HSP 1 Score: 236.113 bits (601), Expect = 1.115e-78
Identity = 125/206 (60.68%), Postives = 153/206 (74.27%), Query Frame = 2 
Query:   68 MGINQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLEPKRIHDVRVRGGNIKKRALRLDHGNFSWSSQAISRKARIIDTVYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLXXXXXXXXXXXXXXXXXXXXXXNIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY 685
            MGI++DS HKRR TGG+R    KKRK+ELGRPAANTKL   R+H VR RGGN K RALRL+ GNF+W+S+ ++RK RI D VYNASNNELVRTKTLVKN+IV IDA P +QWYE+HY+         K+     +  +E ++  +KRS   M KY  RQK    ++EQAL++QF SG ++ACISSRPGQ GR+DGYILEGKELEFY
Sbjct:    1 MGISRDSAHKRRATGGKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRGGNTKLRALRLETGNFAWASEGVARKTRIADVVYNASNNELVRTKTLVKNSIVVIDATPFRQWYEAHYV----LPLGRKRNPKHAQKEDENDVLTKKRSEKVMKKYLERQKYG--KVEQALEDQFTSGRILACISSRPGQCGRSDGYILEGKELEFY 200
[Close]
BLAST of 40S ribosomal protein S8 vs. Ensembl Fly
Match: RpS8 (gene:FBgn0039713 transcript:FBtr0085489)

HSP 1 Score: 236.113 bits (601), Expect = 1.115e-78
Identity = 125/206 (60.68%), Postives = 153/206 (74.27%), Query Frame = 2 
Query:   68 MGINQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLEPKRIHDVRVRGGNIKKRALRLDHGNFSWSSQAISRKARIIDTVYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLXXXXXXXXXXXXXXXXXXXXXXNIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY 685
            MGI++DS HKRR TGG+R    KKRK+ELGRPAANTKL   R+H VR RGGN K RALRL+ GNF+W+S+ ++RK RI D VYNASNNELVRTKTLVKN+IV IDA P +QWYE+HY+         K+     +  +E ++  +KRS   M KY  RQK    ++EQAL++QF SG ++ACISSRPGQ GR+DGYILEGKELEFY
Sbjct:    1 MGISRDSAHKRRATGGKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRGGNTKLRALRLETGNFAWASEGVARKTRIADVVYNASNNELVRTKTLVKNSIVVIDATPFRQWYEAHYV----LPLGRKRNPKHAQKEDENDVLTKKRSEKVMKKYLERQKYG--KVEQALEDQFTSGRILACISSRPGQCGRSDGYILEGKELEFY 200
[Close]
BLAST of 40S ribosomal protein S8 vs. Ensembl Fly
Match: RpS8 (gene:FBgn0039713 transcript:FBtr0346158)

HSP 1 Score: 236.113 bits (601), Expect = 1.115e-78
Identity = 125/206 (60.68%), Postives = 153/206 (74.27%), Query Frame = 2 
Query:   68 MGINQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLEPKRIHDVRVRGGNIKKRALRLDHGNFSWSSQAISRKARIIDTVYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLXXXXXXXXXXXXXXXXXXXXXXNIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY 685
            MGI++DS HKRR TGG+R    KKRK+ELGRPAANTKL   R+H VR RGGN K RALRL+ GNF+W+S+ ++RK RI D VYNASNNELVRTKTLVKN+IV IDA P +QWYE+HY+         K+     +  +E ++  +KRS   M KY  RQK    ++EQAL++QF SG ++ACISSRPGQ GR+DGYILEGKELEFY
Sbjct:    1 MGISRDSAHKRRATGGKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRGGNTKLRALRLETGNFAWASEGVARKTRIADVVYNASNNELVRTKTLVKNSIVVIDATPFRQWYEAHYV----LPLGRKRNPKHAQKEDENDVLTKKRSEKVMKKYLERQKYG--KVEQALEDQFTSGRILACISSRPGQCGRSDGYILEGKELEFY 200
[Close]
BLAST of 40S ribosomal protein S8 vs. Ensembl Zebrafish
Match: rps8b (ribosomal protein S8b [Source:ZFIN;Acc:ZDB-GENE-050522-202])

HSP 1 Score: 243.432 bits (620), Expect = 2.161e-81
Identity = 133/206 (64.56%), Postives = 155/206 (75.24%), Query Frame = 2 
Query:   68 MGINQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLEPKRIHDVRVRGGNIKKRALRLDHGNFSWSSQAISRKARIIDTVYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLXXXXXXXXXXXXXXXXXXXXXXNIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY 685
            MGI++D WHKRRKTGG+R   HKKRKYELGRP ANTK+ P+RIH VRVRGGN K RALRLD GNFSW S+  +RK RIID VYNASNNELVRTKTLVKN IV +D+AP +QWYE+HY         + + +GA+ T EE  I N+KRS     K E R+K    ++   L+EQFL G L+ACI+SRPGQ GRADGYILEGKELEFY
Sbjct:    1 MGISRDHWHKRRKTGGKRKPYHKKRKYELGRPPANTKIGPRRIHTVRVRGGNKKYRALRLDSGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLVDSAPYRQWYEAHY------AIPLGRKKGAKLTPEEEEILNKKRSKKVQKKIEGRRK--KSKISSLLEEQFLQGKLLACIASRPGQCGRADGYILEGKELEFY 198
[Close]
BLAST of 40S ribosomal protein S8 vs. Ensembl Zebrafish
Match: rps8a (ribosomal protein S8a [Source:NCBI gene;Acc:407690])

HSP 1 Score: 243.047 bits (619), Expect = 3.099e-81
Identity = 130/206 (63.11%), Postives = 156/206 (75.73%), Query Frame = 2 
Query:   68 MGINQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLEPKRIHDVRVRGGNIKKRALRLDHGNFSWSSQAISRKARIIDTVYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLXXXXXXXXXXXXXXXXXXXXXXNIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY 685
            MGI++D+WHKRR+TGG+R   HKKRKYELGRPAANTK+ P+RIH +RVRGGN K RALRLD GNFSW S+  +RK RIID VYNASNNELVRTKTLVKN +V +D+ P +QWYESHY         + + +GA+ T EE  I N+KRS     K+  R+K    ++   L+EQFL G L+ACISSRPGQ GRADGY+LEGKELEFY
Sbjct:    1 MGISRDNWHKRRRTGGKRKPVHKKRKYELGRPAANTKIGPRRIHTIRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCVVLVDSTPYRQWYESHY------ALPLGRKKGAKLTPEEEEILNKKRSKKVQKKFTLRRK--TAKISPLLEEQFLQGKLLACISSRPGQCGRADGYVLEGKELEFY 198
[Close]
BLAST of 40S ribosomal protein S8 vs. Ensembl Xenopus
Match: rps8 (ribosomal protein S8 [Source:NCBI gene;Acc:549320])

HSP 1 Score: 243.047 bits (619), Expect = 4.563e-81
Identity = 131/206 (63.59%), Postives = 156/206 (75.73%), Query Frame = 2 
Query:   68 MGINQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLEPKRIHDVRVRGGNIKKRALRLDHGNFSWSSQAISRKARIIDTVYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLXXXXXXXXXXXXXXXXXXXXXXNIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY 685
            MGI++D+WHKRRKTGG+R   HKKRKYELGRPAANTK+ P+RIH VRVRGGN K RALRLD GNFSW S+  +RK RIID VYNASNNELVRTKTLVKN IV +D+ P +QW+E+HY         + + +GA+ T EE  I N+KRS     KYE R+K    ++   L+EQF  G L+ACI+SRPGQ GRADGY+LEGKELEFY
Sbjct:    1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDAGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLVDSTPYRQWFEAHY------ALPLGRKKGAKLTPEEEEILNKKRSKKTQKKYEERKK--TAKISPLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFY 198
[Close]
BLAST of 40S ribosomal protein S8 vs. Ensembl Xenopus
Match: rps8 (ribosomal protein S8 [Source:NCBI gene;Acc:549320])

HSP 1 Score: 239.965 bits (611), Expect = 8.348e-80
Identity = 130/205 (63.41%), Postives = 155/205 (75.61%), Query Frame = 2 
Query:   71 GINQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLEPKRIHDVRVRGGNIKKRALRLDHGNFSWSSQAISRKARIIDTVYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLXXXXXXXXXXXXXXXXXXXXXXNIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY 685
            GI++D+WHKRRKTGG+R   HKKRKYELGRPAANTK+ P+RIH VRVRGGN K RALRLD GNFSW S+  +RK RIID VYNASNNELVRTKTLVKN IV +D+ P +QW+E+HY         + + +GA+ T EE  I N+KRS     KYE R+K    ++   L+EQF  G L+ACI+SRPGQ GRADGY+LEGKELEFY
Sbjct:    8 GISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDAGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLVDSTPYRQWFEAHY------ALPLGRKKGAKLTPEEEEILNKKRSKKTQKKYEERKK--TAKISPLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFY 204
[Close]
BLAST of 40S ribosomal protein S8 vs. Ensembl Mouse
Match: Rps8 (ribosomal protein S8 [Source:MGI Symbol;Acc:MGI:98166])

HSP 1 Score: 243.432 bits (620), Expect = 2.184e-81
Identity = 133/206 (64.56%), Postives = 156/206 (75.73%), Query Frame = 2 
Query:   68 MGINQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLEPKRIHDVRVRGGNIKKRALRLDHGNFSWSSQAISRKARIIDTVYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLXXXXXXXXXXXXXXXXXXXXXXNIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY 685
            MGI++D+WHKRRKTGG+R   HKKRKYELGRPAANTK+ P+RIH VRVRGGN K RALRLD GNFSW S+  +RK RIID VYNASNNELVRTKTLVKN IV ID+ P +QWYESHY         + + +GA+ T EE  I N+KRS     KY+ R+K    ++   L+EQF  G L+ACI+SRPGQ GRADGY+LEGKELEFY
Sbjct:    1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHY------ALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKK--NAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFY 198
[Close]
BLAST of 40S ribosomal protein S8 vs. UniProt/SwissProt
Match: sp|Q8WQI5|RS8_SPOFR (40S ribosomal protein S8 OS=Spodoptera frugiperda OX=7108 GN=RpS8 PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 1.912e-86
Identity = 136/206 (66.02%), Postives = 157/206 (76.21%), Query Frame = 2 
Query:   68 MGINQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLEPKRIHDVRVRGGNIKKRALRLDHGNFSWSSQAISRKARIIDTVYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLXXXXXXXXXXXXXXXXXXXXXXNIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY 685
            MGI++D WHKRR TGG+R    KKRKYELGRPAANTKL P+RIH VR RGGN K RALRLD GNFSW S+  +RK+RIID VYNASNNELVRTKTLVKN IV +DA P +QWYESHYL  +G+KK  K  E  +       I N+KRS     KY ARQ+L   ++E AL+EQF +G L+AC++SRPGQ GRADGYILEGKELEFY
Sbjct:    1 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFSWGSECSTRKSRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEAEDA------IINKKRSQKTAKKYLARQRL--SKVESALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFY 198
[Close]
BLAST of 40S ribosomal protein S8 vs. UniProt/SwissProt
Match: sp|O76756|RS8_APIME (40S ribosomal protein S8 OS=Apis mellifera OX=7460 GN=RpS8 PE=2 SV=2)

HSP 1 Score: 243.817 bits (621), Expect = 1.176e-80
Identity = 131/206 (63.59%), Postives = 153/206 (74.27%), Query Frame = 2 
Query:   68 MGINQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLEPKRIHDVRVRGGNIKKRALRLDHGNFSWSSQAISRKARIIDTVYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLXXXXXXXXXXXXXXXXXXXXXXNIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY 685
            MGI++D WHKRR TGG+R    KKRK+ELGRPAANTKL P+RIH VR RGGN K RALRLD GNFSW S+  +RK RIID VYNASNNELVRTKTLVKN IV IDA P +QWYE HY+        + +  GA+ T  E  + N+KRS     KY+ARQ+    ++E AL+EQF +G ++ACISSRPGQ GR DGYILEGKELEFY
Sbjct:    1 MGISRDHWHKRRATGGKRKPIRKKRKFELGRPAANTKLGPQRIHTVRTRGGNKKYRALRLDTGNFSWGSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEGHYV------LPLGRKRGAKLTEAEEEVLNKKRSKKAEAKYKARQRF--AKVEPALEEQFATGRVLACISSRPGQCGREDGYILEGKELEFY 198
[Close]
BLAST of 40S ribosomal protein S8 vs. UniProt/SwissProt
Match: sp|P62243|RS8_RAT (40S ribosomal protein S8 OS=Rattus norvegicus OX=10116 GN=Rps8 PE=1 SV=2)

HSP 1 Score: 243.432 bits (620), Expect = 1.528e-80
Identity = 133/206 (64.56%), Postives = 156/206 (75.73%), Query Frame = 2 
Query:   68 MGINQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLEPKRIHDVRVRGGNIKKRALRLDHGNFSWSSQAISRKARIIDTVYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLXXXXXXXXXXXXXXXXXXXXXXNIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY 685
            MGI++D+WHKRRKTGG+R   HKKRKYELGRPAANTK+ P+RIH VRVRGGN K RALRLD GNFSW S+  +RK RIID VYNASNNELVRTKTLVKN IV ID+ P +QWYESHY         + + +GA+ T EE  I N+KRS     KY+ R+K    ++   L+EQF  G L+ACI+SRPGQ GRADGY+LEGKELEFY
Sbjct:    1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHY------ALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKK--NAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFY 198
[Close]
BLAST of 40S ribosomal protein S8 vs. UniProt/SwissProt
Match: sp|P62242|RS8_MOUSE (40S ribosomal protein S8 OS=Mus musculus OX=10090 GN=Rps8 PE=1 SV=2)

HSP 1 Score: 243.432 bits (620), Expect = 1.528e-80
Identity = 133/206 (64.56%), Postives = 156/206 (75.73%), Query Frame = 2 
Query:   68 MGINQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLEPKRIHDVRVRGGNIKKRALRLDHGNFSWSSQAISRKARIIDTVYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLXXXXXXXXXXXXXXXXXXXXXXNIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY 685
            MGI++D+WHKRRKTGG+R   HKKRKYELGRPAANTK+ P+RIH VRVRGGN K RALRLD GNFSW S+  +RK RIID VYNASNNELVRTKTLVKN IV ID+ P +QWYESHY         + + +GA+ T EE  I N+KRS     KY+ R+K    ++   L+EQF  G L+ACI+SRPGQ GRADGY+LEGKELEFY
Sbjct:    1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHY------ALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKK--NAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFY 198
[Close]
BLAST of 40S ribosomal protein S8 vs. UniProt/SwissProt
Match: sp|Q4R6P8|RS8_MACFA (40S ribosomal protein S8 OS=Macaca fascicularis OX=9541 GN=RPS8 PE=2 SV=3)

HSP 1 Score: 243.432 bits (620), Expect = 1.528e-80
Identity = 133/206 (64.56%), Postives = 156/206 (75.73%), Query Frame = 2 
Query:   68 MGINQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLEPKRIHDVRVRGGNIKKRALRLDHGNFSWSSQAISRKARIIDTVYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLXXXXXXXXXXXXXXXXXXXXXXNIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY 685
            MGI++D+WHKRRKTGG+R   HKKRKYELGRPAANTK+ P+RIH VRVRGGN K RALRLD GNFSW S+  +RK RIID VYNASNNELVRTKTLVKN IV ID+ P +QWYESHY         + + +GA+ T EE  I N+KRS     KY+ R+K    ++   L+EQF  G L+ACI+SRPGQ GRADGY+LEGKELEFY
Sbjct:    1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHY------ALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKK--NAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFY 198
[Close]
BLAST of 40S ribosomal protein S8 vs. TrEMBL
Match: A0A0R3TNP4 (40S ribosomal protein S8 OS=Rodentolepis nana OX=102285 GN=HNAJ_LOCUS9017 PE=3 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 5.819e-90
Identity = 144/206 (69.90%), Postives = 164/206 (79.61%), Query Frame = 2 
Query:   68 MGINQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLEPKRIHDVRVRGGNIKKRALRLDHGNFSWSSQAISRKARIIDTVYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLXXXXXXXXXXXXXXXXXXXXXXNIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY 685
            MGI +D  HKR KTGGRR +  KKRK+ELGRPAA TKL PKRIH VRVRGGNIK RA+RLD GNFSW SQAISRK+RIID VYNASNNELVRTKTLVKN IVQID+AP +QWYE+HYLKE+G+ +     +       E ++  +KRS+S M K+EARQKLP   L   LKEQF+SG L+AC+SSRPGQVGR DGYILEGKELEFY
Sbjct:    1 MGIARDRIHKRSKTGGRRERNRKKRKFELGRPAAMTKLGPKRIHSVRVRGGNIKLRAMRLDQGNFSWPSQAISRKSRIIDVVYNASNNELVRTKTLVKNAIVQIDSAPFRQWYEAHYLKELGRHQAKGGKKVEPVENAEEDVLLKKRSASAMKKFEARQKLPQANLSDHLKEQFMSGRLLACVSSRPGQVGRCDGYILEGKELEFY 206
[Close]
BLAST of 40S ribosomal protein S8 vs. TrEMBL
Match: A0A0R3STW7 (40S ribosomal protein S8 OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS8886 PE=3 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 3.080e-88
Identity = 142/206 (68.93%), Postives = 163/206 (79.13%), Query Frame = 2 
Query:   68 MGINQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLEPKRIHDVRVRGGNIKKRALRLDHGNFSWSSQAISRKARIIDTVYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLXXXXXXXXXXXXXXXXXXXXXXNIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY 685
            MGI +D  HKR KTGGRR +  KKRK+ELGRPAA TKL PKRIH VRVRGGNIK RA+RLD GNFSW SQA+SRK+RIID VYNASNNELVRTKTLVKN IVQID+AP +QWYE+HYLKE+G+       +       E ++  +KRS+S M K+EARQKLP   L   LKEQF+SG L+AC+SSRPGQVGR DGYILEGKEL+FY
Sbjct:    1 MGIARDRIHKRSKTGGRRERNRKKRKFELGRPAAMTKLGPKRIHSVRVRGGNIKLRAMRLDQGNFSWPSQAVSRKSRIIDVVYNASNNELVRTKTLVKNAIVQIDSAPFRQWYEAHYLKELGRHHAKGGKKIEPVENPEEDVLLKKRSASAMKKFEARQKLPQANLSDHLKEQFMSGRLLACVSSRPGQVGRCDGYILEGKELDFY 206
[Close]
BLAST of 40S ribosomal protein S8 vs. TrEMBL
Match: A0A068XZQ3 (40S ribosomal protein S8 OS=Echinococcus multilocularis OX=6211 GN=EmuJ_000331100 PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 4.765e-88
Identity = 141/206 (68.45%), Postives = 162/206 (78.64%), Query Frame = 2 
Query:   68 MGINQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLEPKRIHDVRVRGGNIKKRALRLDHGNFSWSSQAISRKARIIDTVYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLXXXXXXXXXXXXXXXXXXXXXXNIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY 685
            MGI +D  HKR KTGGRR +  KKRK+ELGRPAA TKL P+RIH VRVRGGNIK RA+RLD GNFSW +QAISRK+RIID VYNASNNELVRTKTLVKN IVQ+D+AP +QWYE+HYL +   +   K  +       E ++  +KRS+S M KYEARQKLP   L + LKEQF+SG L+ACISSRPGQVGR DGYILEGKELEFY
Sbjct:    1 MGIARDRIHKRSKTGGRRERNRKKRKFELGRPAAMTKLGPRRIHTVRVRGGNIKLRAMRLDQGNFSWPTQAISRKSRIIDVVYNASNNELVRTKTLVKNAIVQVDSAPFRQWYEAHYL-KELGRHHAKGKKVETTENPEDDVLLKKRSASVMKKYEARQKLPQATLSENLKEQFMSGRLLACISSRPGQVGRCDGYILEGKELEFY 205
[Close]
BLAST of 40S ribosomal protein S8 vs. TrEMBL
Match: A0A068WXA1 (40S ribosomal protein S8 OS=Echinococcus granulosus OX=6210 GN=EgrG_000331100 PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 4.765e-88
Identity = 141/206 (68.45%), Postives = 162/206 (78.64%), Query Frame = 2 
Query:   68 MGINQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLEPKRIHDVRVRGGNIKKRALRLDHGNFSWSSQAISRKARIIDTVYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLXXXXXXXXXXXXXXXXXXXXXXNIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY 685
            MGI +D  HKR KTGGRR +  KKRK+ELGRPAA TKL P+RIH VRVRGGNIK RA+RLD GNFSW +QAISRK+RIID VYNASNNELVRTKTLVKN IVQ+D+AP +QWYE+HYL +   +   K  +       E ++  +KRS+S M KYEARQKLP   L + LKEQF+SG L+ACISSRPGQVGR DGYILEGKELEFY
Sbjct:    1 MGIARDRIHKRSKTGGRRERNRKKRKFELGRPAAMTKLGPRRIHTVRVRGGNIKLRAMRLDQGNFSWPTQAISRKSRIIDVVYNASNNELVRTKTLVKNAIVQVDSAPFRQWYEAHYL-KELGRHHAKGKKVETTENPEDDVLLKKRSASVMKKYEARQKLPQATLSENLKEQFMSGRLLACISSRPGQVGRCDGYILEGKELEFY 205
[Close]
BLAST of 40S ribosomal protein S8 vs. TrEMBL
Match: A0A5K3FKN8 (Uncharacterized protein OS=Mesocestoides corti OX=53468 PE=4 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 9.804e-88
Identity = 142/206 (68.93%), Postives = 162/206 (78.64%), Query Frame = 2 
Query:   68 MGINQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLEPKRIHDVRVRGGNIKKRALRLDHGNFSWSSQAISRKARIIDTVYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLXXXXXXXXXXXXXXXXXXXXXXNIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY 685
            MGI +D  HKR KTGGRR +  KKRK+ELGRPAA TKL P+RIH VRVRGGNIK RA+RLD GNFSW SQAISRK+RIID VYNASNNELVRTKTLVKN IVQID+AP +QWYE+HYL +   +  VK          E ++  +KRS+S + KYEARQKLPA  L   LKEQF+SG L+AC+SSRPGQVGR DGYILEGKEL+FY
Sbjct:    1 MGIARDRIHKRSKTGGRRERNRKKRKFELGRPAAMTKLGPRRIHTVRVRGGNIKLRAMRLDQGNFSWPSQAISRKSRIIDVVYNASNNELVRTKTLVKNAIVQIDSAPFRQWYEAHYL-KELGRHHVKGKHAQTTENPEDDVLLKKRSASVLKKYEARQKLPAASLSDNLKEQFMSGRLLACVSSRPGQVGRCDGYILEGKELDFY 205
[Close]
BLAST of 40S ribosomal protein S8 vs. Ensembl Cavefish
Match: rps8a (ribosomal protein S8 [Source:NCBI gene;Acc:103045837])

HSP 1 Score: 241.891 bits (616), Expect = 6.866e-81
Identity = 128/206 (62.14%), Postives = 155/206 (75.24%), Query Frame = 2 
Query:   68 MGINQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLEPKRIHDVRVRGGNIKKRALRLDHGNFSWSSQAISRKARIIDTVYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLXXXXXXXXXXXXXXXXXXXXXXNIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY 685
            MGI++D+WHKRRKTGG+R   HKKRKYELGRPA+NTKL PKRIH +RVRGGN K RAL+LD GNFSW S+  +RK RIID VYNASNNELVRTKTLVKN +V +D+ P + WYE+HY         + + +GA+ + E+  I N+KRS     K +AR+K   C++   L EQF  G L+AC+SSRPGQ GRADGYILEGKELEFY
Sbjct:    1 MGISRDNWHKRRKTGGKRKPVHKKRKYELGRPASNTKLGPKRIHTIRVRGGNKKFRALKLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCVVLVDSGPFRHWYEAHY------ALPLGRKKGAKLSPEDDEILNKKRSKKVQKKLDARRK--NCKVSSILDEQFQQGKLLACLSSRPGQCGRADGYILEGKELEFY 198
[Close]
BLAST of 40S ribosomal protein S8 vs. Ensembl Cavefish
Match: rps8a (ribosomal protein S8 [Source:NCBI gene;Acc:103045837])

HSP 1 Score: 234.958 bits (598), Expect = 3.735e-78
Identity = 125/201 (62.19%), Postives = 150/201 (74.63%), Query Frame = 2 
Query:   83 DSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLEPKRIHDVRVRGGNIKKRALRLDHGNFSWSSQAISRKARIIDTVYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLXXXXXXXXXXXXXXXXXXXXXXNIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY 685
            D+WHKRRKTGG+R   HKKRKYELGRPA+NTKL PKRIH +RVRGGN K RAL+LD GNFSW S+  +RK RIID VYNASNNELVRTKTLVKN +V +D+ P + WYE+HY         + + +GA+ + E+  I N+KRS     K +AR+K   C++   L EQF  G L+AC+SSRPGQ GRADGYILEGKELEFY
Sbjct:    2 DNWHKRRKTGGKRKPVHKKRKYELGRPASNTKLGPKRIHTIRVRGGNKKFRALKLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCVVLVDSGPFRHWYEAHY------ALPLGRKKGAKLSPEDDEILNKKRSKKVQKKLDARRK--NCKVSSILDEQFQQGKLLACLSSRPGQCGRADGYILEGKELEFY 194
[Close]
BLAST of 40S ribosomal protein S8 vs. Ensembl Yeast
Match: RPS8A (Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S8, no bacterial homolog; RPS8A has a paralog, RPS8B, that arose from the whole genome duplication [Source:SGD;Acc:S000000168])

HSP 1 Score: 204.912 bits (520), Expect = 2.378e-67
Identity = 113/206 (54.85%), Postives = 141/206 (68.45%), Query Frame = 2 
Query:   68 MGINQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLEPKRIHDVRVRGGNIKKRALRLDHGNFSWSSQAISRKARIIDTVYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLXXXXXXXXXXXXXXXXXXXXXXNIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY 685
            MGI++DS HKR  TG +R Q  KKRK+ELGR  ANTK+  KRIH VR RGGN K RALR++ GNFSW+S+ IS+K RI   VY+ SNNELVRT TL K  IVQIDA P +QW+E+HY + +GKKK VK+ E               +S +   K+ AR    + ++E +++ QF +G L ACISSRPGQ GR DGYILEG+EL FY
Sbjct:    1 MGISRDSRHKRSATGAKRAQFRKKRKFELGRQPANTKIGAKRIHSVRTRGGNKKYRALRIETGNFSWASEGISKKTRIAGVVYHPSNNELVRTNTLTKAAIVQIDATPFRQWFEAHYGQTLGKKKNVKEEETVA------------KSKNAERKWAAR--AASAKIESSVESQFSAGRLYACISSRPGQSGRCDGYILEGEELAFY 192
[Close]
BLAST of 40S ribosomal protein S8 vs. Ensembl Yeast
Match: RPS8B (Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S8, no bacterial homolog; RPS8B has a paralog, RPS8A, that arose from the whole genome duplication [Source:SGD;Acc:S000000904])

HSP 1 Score: 204.912 bits (520), Expect = 2.378e-67
Identity = 113/206 (54.85%), Postives = 141/206 (68.45%), Query Frame = 2 
Query:   68 MGINQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLEPKRIHDVRVRGGNIKKRALRLDHGNFSWSSQAISRKARIIDTVYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLXXXXXXXXXXXXXXXXXXXXXXNIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY 685
            MGI++DS HKR  TG +R Q  KKRK+ELGR  ANTK+  KRIH VR RGGN K RALR++ GNFSW+S+ IS+K RI   VY+ SNNELVRT TL K  IVQIDA P +QW+E+HY + +GKKK VK+ E               +S +   K+ AR    + ++E +++ QF +G L ACISSRPGQ GR DGYILEG+EL FY
Sbjct:    1 MGISRDSRHKRSATGAKRAQFRKKRKFELGRQPANTKIGAKRIHSVRTRGGNKKYRALRIETGNFSWASEGISKKTRIAGVVYHPSNNELVRTNTLTKAAIVQIDATPFRQWFEAHYGQTLGKKKNVKEEETVA------------KSKNAERKWAAR--AASAKIESSVESQFSAGRLYACISSRPGQSGRCDGYILEGEELAFY 192
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BLAST of 40S ribosomal protein S8 vs. Ensembl Nematostella
Match: EDO30596 (40S ribosomal protein S8 [Source:UniProtKB/TrEMBL;Acc:A7T0C1])

HSP 1 Score: 243.817 bits (621), Expect = 4.664e-82
Identity = 125/206 (60.68%), Postives = 152/206 (73.79%), Query Frame = 2 
Query:   68 MGINQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLEPKRIHDVRVRGGNIKKRALRLDHGNFSWSSQAISRKARIIDTVYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLXXXXXXXXXXXXXXXXXXXXXXNIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY 685
            MGI++DSWHK R TGG+     KKRK+ELGRP ANTK+  KRIH+VR RGGN K RALRLD GNFSW S++ +RKARIID VYNASNNELVRTKTLVKN IVQ+D+ P +QWYE+HY         + + +  + T EE  I N+KRS+ C  K EAR+     ++   ++EQF++G L AC+SSRPGQ GR DGYILEGKELEFY
Sbjct:    1 MGISRDSWHKHRATGGKMKPLRKKRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRALRLDTGNFSWGSESCTRKARIIDVVYNASNNELVRTKTLVKNCIVQVDSTPFRQWYEAHY------AIPIGRKKTKQPTEEEQEILNKKRSNHCTRKLEARK--ANAKVAPGMEEQFVTGRLYACVSSRPGQSGRCDGYILEGKELEFY 198
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BLAST of 40S ribosomal protein S8 vs. Ensembl Medaka
Match: rps8a (ribosomal protein S8 [Source:NCBI gene;Acc:101168488])

HSP 1 Score: 228.024 bits (580), Expect = 2.131e-75
Identity = 125/204 (61.27%), Postives = 154/204 (75.49%), Query Frame = 2 
Query:   74 INQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLEPKRIHDVRVRGGNIKKRALRLDHGNFSWSSQAISRKARIIDTVYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLXXXXXXXXXXXXXXXXXXXXXXNIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY 685
            I++D+WHKRRKTGG+R   HKKRKYELGRP ANTK+ P+RIH VRVRGGN K RALRLD GNFSW S+  +RK RIID VYNASNNELVRTKTLVKN +V +D+ P +QWYE+HY         + + +GA+ T +E  + N+KRS     KY+ R+K+   ++   L+EQFL G L+ CI+SRPGQ GRADGY+LEGKELEFY
Sbjct:    2 ISRDNWHKRRKTGGKRKPYHKKRKYELGRPPANTKIGPRRIHTVRVRGGNKKYRALRLDSGNFSWGSEC-TRKTRIIDVVYNASNNELVRTKTLVKNCVVLVDSLPFRQWYEAHY------ATPLGRKKGAKLTPDEEEVLNKKRSKKTQKKYDERKKV--AKISPLLEEQFLQGKLL-CIASRPGQCGRADGYVLEGKELEFY 195
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BLAST of 40S ribosomal protein S8 vs. Planmine SMEST
Match: SMESG000047167.1 (SMESG000047167.1)

HSP 1 Score: 379.022 bits (972), Expect = 5.851e-135
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 2 
Query:   68 MGINQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLEPKRIHDVRVRGGNIKKRALRLDHGNFSWSSQAISRKARIIDTVYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLXXXXXXXXXXXXXXXXXXXXXXNIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY 685
            MGINQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLEPKRIHDVRVRGGNIKKRALRLDHGNFSWSSQAISRKARIIDTVYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLKEIGKKKVVKKVEGAEETAEEINIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY
Sbjct:    1 MGINQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLEPKRIHDVRVRGGNIKKRALRLDHGNFSWSSQAISRKARIIDTVYNASNNELVRTKTLVKNTIVQIDAAPLKQWYESHYLKEIGKKKVVKKVEGAEETAEEINIFNQKRSSSCMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEGKELEFY 206
The following BLAST results are available for this feature:
BLAST of 40S ribosomal protein S8 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 4
Match NameE-valueIdentityDescription
RPS83.182e-8164.56ribosomal protein S8 [Source:HGNC Symbol;Acc:HGNC:... [more]
AC270156.13.898e-6658.74pep chromosome:GRCh38:CHR_HG2365_PATCH:21156147:21... [more]
AC270156.13.898e-6658.74pep chromosome:GRCh38:CHR_HG2365_PATCH:21156147:21... [more]
RPS84.492e-6657.77ribosomal protein S8 [Source:HGNC Symbol;Acc:HGNC:... [more]
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BLAST of 40S ribosomal protein S8 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rps-83.547e-8060.1940S ribosomal protein S8 [Source:UniProtKB/Swiss-... [more]
rps-87.182e-3655.2040S ribosomal protein S8 [Source:UniProtKB/Swiss-... [more]
rps-87.182e-3655.2040S ribosomal protein S8 [Source:UniProtKB/Swiss-... [more]
rps-87.182e-3655.2040S ribosomal protein S8 [Source:UniProtKB/Swiss-... [more]
rps-87.182e-3655.2040S ribosomal protein S8 [Source:UniProtKB/Swiss-... [more]
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BLAST of 40S ribosomal protein S8 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 4
Match NameE-valueIdentityDescription
RpS81.115e-7860.68gene:FBgn0039713 transcript:FBtr0346159[more]
RpS81.115e-7860.68gene:FBgn0039713 transcript:FBtr0310274[more]
RpS81.115e-7860.68gene:FBgn0039713 transcript:FBtr0085489[more]
RpS81.115e-7860.68gene:FBgn0039713 transcript:FBtr0346158[more]
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BLAST of 40S ribosomal protein S8 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
rps8b2.161e-8164.56ribosomal protein S8b [Source:ZFIN;Acc:ZDB-GENE-05... [more]
rps8a3.099e-8163.11ribosomal protein S8a [Source:NCBI gene;Acc:407690... [more]
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BLAST of 40S ribosomal protein S8 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2
Match NameE-valueIdentityDescription
rps84.563e-8163.59ribosomal protein S8 [Source:NCBI gene;Acc:549320][more]
rps88.348e-8063.41ribosomal protein S8 [Source:NCBI gene;Acc:549320][more]
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BLAST of 40S ribosomal protein S8 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 1
Match NameE-valueIdentityDescription
Rps82.184e-8164.56ribosomal protein S8 [Source:MGI Symbol;Acc:MGI:98... [more]
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BLAST of 40S ribosomal protein S8 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q8WQI5|RS8_SPOFR1.912e-8666.0240S ribosomal protein S8 OS=Spodoptera frugiperda ... [more]
sp|O76756|RS8_APIME1.176e-8063.5940S ribosomal protein S8 OS=Apis mellifera OX=7460... [more]
sp|P62243|RS8_RAT1.528e-8064.5640S ribosomal protein S8 OS=Rattus norvegicus OX=1... [more]
sp|P62242|RS8_MOUSE1.528e-8064.5640S ribosomal protein S8 OS=Mus musculus OX=10090 ... [more]
sp|Q4R6P8|RS8_MACFA1.528e-8064.5640S ribosomal protein S8 OS=Macaca fascicularis OX... [more]
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BLAST of 40S ribosomal protein S8 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0R3TNP45.819e-9069.9040S ribosomal protein S8 OS=Rodentolepis nana OX=1... [more]
A0A0R3STW73.080e-8868.9340S ribosomal protein S8 OS=Hymenolepis diminuta O... [more]
A0A068XZQ34.765e-8868.4540S ribosomal protein S8 OS=Echinococcus multilocu... [more]
A0A068WXA14.765e-8868.4540S ribosomal protein S8 OS=Echinococcus granulosu... [more]
A0A5K3FKN89.804e-8868.93Uncharacterized protein OS=Mesocestoides corti OX=... [more]
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BLAST of 40S ribosomal protein S8 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
rps8a6.866e-8162.14ribosomal protein S8 [Source:NCBI gene;Acc:1030458... [more]
rps8a3.735e-7862.19ribosomal protein S8 [Source:NCBI gene;Acc:1030458... [more]
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BLAST of 40S ribosomal protein S8 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of 40S ribosomal protein S8 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2
Match NameE-valueIdentityDescription
RPS8A2.378e-6754.85Protein component of the small (40S) ribosomal sub... [more]
RPS8B2.378e-6754.85Protein component of the small (40S) ribosomal sub... [more]
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BLAST of 40S ribosomal protein S8 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO305964.664e-8260.6840S ribosomal protein S8 [Source:UniProtKB/TrEMBL... [more]
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BLAST of 40S ribosomal protein S8 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rps8a2.131e-7561.27ribosomal protein S8 [Source:NCBI gene;Acc:1011684... [more]
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BLAST of 40S ribosomal protein S8 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000047167.15.851e-135100.00SMESG000047167.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30006216 ID=SMED30006216|Name=40S ribosomal protein S8|organism=Schmidtea mediterranea sexual|type=transcript|length=728bp
AATTCAATAAATATTTGTTTTAATTTTCTATAAACAGTATAATTATAAAT
TTTGAATATTTATTGCAATGGGTATTAATCAAGATAGCTGGCATAAAAGA
AGGAAGACTGGAGGTCGTCGTCCTCAACCACATAAAAAGAGGAAGTACGA
GTTAGGTAGACCAGCTGCAAATACTAAACTTGAACCTAAGAGAATTCATG
ATGTTAGAGTACGTGGTGGTAATATTAAAAAACGTGCTTTAAGATTAGAT
CATGGCAACTTCAGTTGGTCTTCTCAAGCTATTTCACGTAAAGCTAGAAT
AATCGATACTGTCTACAACGCTTCTAACAACGAATTAGTTAGAACTAAAA
CGTTGGTTAAAAATACTATTGTTCAAATCGATGCTGCTCCTCTTAAGCAA
TGGTATGAATCCCATTATTTAAAAGAGATTGGTAAAAAGAAGGTTGTAAA
AAAAGTTGAAGGAGCTGAAGAAACTGCGGAAGAAATCAACATCTTTAATC
AGAAAAGAAGTTCATCGTGTATGGATAAGTATGAAGCTAGACAAAAGTTG
CCTGCATGTGAGCTTGAACAAGCATTGAAAGAACAATTTTTATCTGGTAC
TCTTATGGCTTGTATTTCATCAAGACCAGGTCAAGTTGGTCGTGCAGATG
GATATATATTGGAAGGAAAAGAATTAGAGTTTTATTCTAAAAAATTAAAG
GCCAAGAAATCTAAATAATTTTTGTGAA
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protein sequence of SMED30006216-orf-1

>SMED30006216-orf-1 ID=SMED30006216-orf-1|Name=SMED30006216-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=217bp
MGINQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLEPKRIHDVRVRG
GNIKKRALRLDHGNFSWSSQAISRKARIIDTVYNASNNELVRTKTLVKNT
IVQIDAAPLKQWYESHYLKEIGKKKVVKKVEGAEETAEEINIFNQKRSSS
CMDKYEARQKLPACELEQALKEQFLSGTLMACISSRPGQVGRADGYILEG
KELEFYSKKLKAKKSK*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000039gamma neoblast
PLANA:0000429neoblast
PLANA:0002032epidermal cell
PLANA:0002109X1 cell
PLANA:0003116parenchymal cell
Vocabulary: INTERPRO
TermDefinition
IPR001047Ribosomal_S8e
IPR022309Ribosomal_S8e/biogenesis_NSA2
IPR018283Ribosomal_S8e_CS
Vocabulary: cellular component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0030529intracellular ribonucleoprotein complex
Vocabulary: biological process
TermDefinition
GO:0006412translation
Vocabulary: molecular function
TermDefinition
GO:0003735structural constituent of ribosome
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:2.40.10.450coord: 145..216
e-value: 4.9E-17
score: 64.1
coord: 32..144
e-value: 4.6E-34
score: 119.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..25
NoneNo IPR availablePANTHERPTHR10394:SF340S RIBOSOMAL PROTEIN S8coord: 1..215
NoneNo IPR availableCDDcd11380Ribosomal_S8e_likecoord: 6..198
e-value: 8.38606E-63
score: 190.038
IPR022309Ribosomal protein S8e/ribosomal biogenesis NSA2PFAMPF01201Ribosomal_S8ecoord: 1..198
e-value: 3.8E-52
score: 176.1
IPR001047Ribosomal protein S8eTIGRFAMTIGR00307TIGR00307coord: 1..200
e-value: 2.1E-43
score: 145.5
IPR001047Ribosomal protein S8ePANTHERPTHR1039440S RIBOSOMAL PROTEIN S8coord: 1..215
IPR018283Ribosomal protein S8e, conserved sitePROSITEPS01193RIBOSOMAL_S8Ecoord: 11..30