SMED30006146
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30006146 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 2
Alignments
SMED30006146 aligns in the following genomic locations:
Homology
BLAST of SMED30006146 vs. Ensembl Human
Match: RCOR3 (REST corepressor 3 [Source:HGNC Symbol;Acc:HGNC:25594]) HSP 1 Score: 56.6102 bits (135), Expect = 3.847e-9 Identity = 26/70 (37.14%), Postives = 40/70 (57.14%), Query Frame = 2 Query: 272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKN 481 ++ WHK +++ DL N+ P D W D+ F A H K+F+ I+++ P+KTI LV YY +KK Sbjct: 64 MLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKT 133
BLAST of SMED30006146 vs. Ensembl Human
Match: RCOR3 (REST corepressor 3 [Source:HGNC Symbol;Acc:HGNC:25594]) HSP 1 Score: 57.3806 bits (137), Expect = 2.315e-8 Identity = 26/70 (37.14%), Postives = 40/70 (57.14%), Query Frame = 2 Query: 272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKN 481 ++ WHK +++ DL N+ P D W D+ F A H K+F+ I+++ P+KTI LV YY +KK Sbjct: 154 MLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKT 223
BLAST of SMED30006146 vs. Ensembl Human
Match: RCOR3 (REST corepressor 3 [Source:HGNC Symbol;Acc:HGNC:25594]) HSP 1 Score: 57.3806 bits (137), Expect = 2.911e-8 Identity = 26/66 (39.39%), Postives = 38/66 (57.58%), Query Frame = 2 Query: 281 WHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478 WHK +++ DL N+ P D W D+ F A H K+F+ I+++ P+KTI LV YY +KK Sbjct: 67 WHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKK 132
BLAST of SMED30006146 vs. Ensembl Human
Match: RCOR3 (REST corepressor 3 [Source:HGNC Symbol;Acc:HGNC:25594]) HSP 1 Score: 56.9954 bits (136), Expect = 3.334e-8 Identity = 26/69 (37.68%), Postives = 40/69 (57.97%), Query Frame = 2 Query: 272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478 ++ WHK +++ DL N+ P D W D+ F A H K+F+ I+++ P+KTI LV YY +KK Sbjct: 122 MLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKK 190
BLAST of SMED30006146 vs. Ensembl Human
Match: RCOR3 (REST corepressor 3 [Source:HGNC Symbol;Acc:HGNC:25594]) HSP 1 Score: 56.9954 bits (136), Expect = 3.448e-8 Identity = 26/66 (39.39%), Postives = 38/66 (57.58%), Query Frame = 2 Query: 281 WHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478 WHK +++ DL N+ P D W D+ F A H K+F+ I+++ P+KTI LV YY +KK Sbjct: 125 WHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKK 190
BLAST of SMED30006146 vs. Ensembl Fly
Match: CoRest (gene:FBgn0261573 transcript:FBtr0336667) HSP 1 Score: 58.5362 bits (140), Expect = 2.637e-9 Identity = 27/66 (40.91%), Postives = 38/66 (57.58%), Query Frame = 2 Query: 281 WHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478 WHK DL+ DL N+ P D W D+ F A H K+F+ I+++ P+K+I LV YY +KK Sbjct: 159 WHKHDLERAVMDLANFTPFPDEWTIEDKVLFEQAFQFHGKSFHRIRQMLPDKSIASLVKYYYSWKK 224
BLAST of SMED30006146 vs. Ensembl Fly
Match: CoRest (gene:FBgn0261573 transcript:FBtr0302861) HSP 1 Score: 58.5362 bits (140), Expect = 2.831e-9 Identity = 27/66 (40.91%), Postives = 38/66 (57.58%), Query Frame = 2 Query: 281 WHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478 WHK DL+ DL N+ P D W D+ F A H K+F+ I+++ P+K+I LV YY +KK Sbjct: 159 WHKHDLERAVMDLANFTPFPDEWTIEDKVLFEQAFQFHGKSFHRIRQMLPDKSIASLVKYYYSWKK 224
BLAST of SMED30006146 vs. Ensembl Fly
Match: CoRest (gene:FBgn0261573 transcript:FBtr0302860) HSP 1 Score: 58.5362 bits (140), Expect = 2.831e-9 Identity = 27/66 (40.91%), Postives = 38/66 (57.58%), Query Frame = 2 Query: 281 WHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478 WHK DL+ DL N+ P D W D+ F A H K+F+ I+++ P+K+I LV YY +KK Sbjct: 159 WHKHDLERAVMDLANFTPFPDEWTIEDKVLFEQAFQFHGKSFHRIRQMLPDKSIASLVKYYYSWKK 224
BLAST of SMED30006146 vs. Ensembl Fly
Match: CoRest (gene:FBgn0261573 transcript:FBtr0302859) HSP 1 Score: 58.5362 bits (140), Expect = 2.831e-9 Identity = 27/66 (40.91%), Postives = 38/66 (57.58%), Query Frame = 2 Query: 281 WHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478 WHK DL+ DL N+ P D W D+ F A H K+F+ I+++ P+K+I LV YY +KK Sbjct: 159 WHKHDLERAVMDLANFTPFPDEWTIEDKVLFEQAFQFHGKSFHRIRQMLPDKSIASLVKYYYSWKK 224
BLAST of SMED30006146 vs. Ensembl Fly
Match: CoRest (gene:FBgn0261573 transcript:FBtr0302864) HSP 1 Score: 58.151 bits (139), Expect = 9.356e-9 Identity = 27/66 (40.91%), Postives = 38/66 (57.58%), Query Frame = 2 Query: 281 WHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478 WHK DL+ DL N+ P D W D+ F A H K+F+ I+++ P+K+I LV YY +KK Sbjct: 159 WHKHDLERAVMDLANFTPFPDEWTIEDKVLFEQAFQFHGKSFHRIRQMLPDKSIASLVKYYYSWKK 224
BLAST of SMED30006146 vs. Ensembl Zebrafish
Match: rcor2 (REST corepressor 2 [Source:NCBI gene;Acc:402934]) HSP 1 Score: 57.7658 bits (138), Expect = 1.401e-9 Identity = 27/72 (37.50%), Postives = 40/72 (55.56%), Query Frame = 2 Query: 272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVT 487 ++ WHK D++ DL N+ P D W D+ F A H K+F+ I+++ P+K I LV YY +KK T Sbjct: 66 MLLWHKHDVEKSLADLANFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKMITSLVKYYYSWKKTRT 137
BLAST of SMED30006146 vs. Ensembl Zebrafish
Match: rcor2 (REST corepressor 2 [Source:NCBI gene;Acc:402934]) HSP 1 Score: 58.151 bits (139), Expect = 1.734e-9 Identity = 27/72 (37.50%), Postives = 40/72 (55.56%), Query Frame = 2 Query: 272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVT 487 ++ WHK D++ DL N+ P D W D+ F A H K+F+ I+++ P+K I LV YY +KK T Sbjct: 104 MLLWHKHDVEKSLADLANFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKMITSLVKYYYSWKKTRT 175
BLAST of SMED30006146 vs. Ensembl Zebrafish
Match: rcor2 (REST corepressor 2 [Source:NCBI gene;Acc:402934]) HSP 1 Score: 57.7658 bits (138), Expect = 1.857e-9 Identity = 27/72 (37.50%), Postives = 40/72 (55.56%), Query Frame = 2 Query: 272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVT 487 ++ WHK D++ DL N+ P D W D+ F A H K+F+ I+++ P+K I LV YY +KK T Sbjct: 66 MLLWHKHDVEKSLADLANFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKMITSLVKYYYSWKKTRT 137
BLAST of SMED30006146 vs. Ensembl Zebrafish
Match: rcor3 (REST corepressor 3 [Source:ZFIN;Acc:ZDB-GENE-050208-371]) HSP 1 Score: 54.6842 bits (130), Expect = 2.782e-9 Identity = 25/66 (37.88%), Postives = 38/66 (57.58%), Query Frame = 2 Query: 281 WHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478 WHK +++ DL N+ P D W D+ F A H K+F+ I+++ P+K+I LV YY +KK Sbjct: 111 WHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKSISSLVKYYYSWKK 176 HSP 2 Score: 26.1794 bits (56), Expect = 2.782e-9 Identity = 20/64 (31.25%), Postives = 31/64 (48.44%), Query Frame = 1 Query: 97 ISVGKDFQAKLPQLEKLSSINYYKCLKRKYEVMLWSTSFVRSQDKLQETISNARIHYKAYKVAQ 288 + VG D+QA +P+ + SS Y K +++WS KL E I+ A+ + Y V Q Sbjct: 45 MRVGSDYQANIPEFDPGSS-KYSD--KDSGGMLVWSPHHTILDSKLDEYIAIAKEKH-GYNVEQ 104
BLAST of SMED30006146 vs. Ensembl Zebrafish
Match: rcor2 (REST corepressor 2 [Source:NCBI gene;Acc:402934]) HSP 1 Score: 57.3806 bits (137), Expect = 1.713e-8 Identity = 27/72 (37.50%), Postives = 40/72 (55.56%), Query Frame = 2 Query: 272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVT 487 ++ WHK D++ DL N+ P D W D+ F A H K+F+ I+++ P+K I LV YY +KK T Sbjct: 104 MLLWHKHDVEKSLADLANFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKMITSLVKYYYSWKKTRT 175
BLAST of SMED30006146 vs. Ensembl Xenopus
Match: rcor2 (REST corepressor 2 [Source:NCBI gene;Acc:100038078]) HSP 1 Score: 54.6842 bits (130), Expect = 1.238e-11 Identity = 25/70 (35.71%), Postives = 38/70 (54.29%), Query Frame = 2 Query: 272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKN 481 ++ WHK D++ DL N+ P + W+ D+ F A H K F I+++ P+K I LV YY +KK Sbjct: 107 MLLWHKHDVERSLADLANFTPFPEEWSVEDKVLFEQAFSFHGKCFQRIQQMLPDKLIPSLVKYYYSWKKT 176 HSP 2 Score: 35.039 bits (79), Expect = 1.238e-11 Identity = 30/96 (31.25%), Postives = 54/96 (56.25%), Query Frame = 1 Query: 19 SVMLTRNRLTSHSLSEIDQG-----SFKNAVISVGKDFQAKLPQLE-KLSSINYYKCLKRKYEVMLWSTSFVRSQDKLQETISNARIHYKAYKVAQ 288 S +++RNR+ S SL ++ + ++++I VG D+QA++P+ + + SS + LK +++WS S S KL E I+ A+ + Y V Q Sbjct: 12 SAVISRNRVKSDSLGNSEEESSEDEAPRDSMIRVGSDYQAQIPECKPEYSSPSSNVELK---GMLVWSPSQFVSDAKLNEYITMAKEKH-GYNVEQ 103
BLAST of SMED30006146 vs. Ensembl Xenopus
Match: RCOR3 (REST corepressor 3 [Source:NCBI gene;Acc:779496]) HSP 1 Score: 55.8398 bits (133), Expect = 5.981e-8 Identity = 25/67 (37.31%), Postives = 38/67 (56.72%), Query Frame = 2 Query: 281 WHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKN 481 WHK +++ DL N+ P D W D+ F A H K+F+ I+++ P+K+I LV YY +KK Sbjct: 110 WHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKSIASLVKYYYSWKKT 176
BLAST of SMED30006146 vs. Ensembl Xenopus
Match: RCOR3 (REST corepressor 3 [Source:NCBI gene;Acc:779496]) HSP 1 Score: 55.8398 bits (133), Expect = 7.137e-8 Identity = 25/67 (37.31%), Postives = 38/67 (56.72%), Query Frame = 2 Query: 281 WHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKN 481 WHK +++ DL N+ P D W D+ F A H K+F+ I+++ P+K+I LV YY +KK Sbjct: 57 WHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKSIASLVKYYYSWKKT 123
BLAST of SMED30006146 vs. Ensembl Xenopus
Match: RCOR3 (REST corepressor 3 [Source:NCBI gene;Acc:779496]) HSP 1 Score: 55.4546 bits (132), Expect = 7.648e-8 Identity = 25/70 (35.71%), Postives = 40/70 (57.14%), Query Frame = 2 Query: 272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKN 481 ++ WHK +++ DL N+ P D W D+ F A H K+F+ I+++ P+K+I LV YY +KK Sbjct: 108 MLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKSIASLVKYYYSWKKT 177
BLAST of SMED30006146 vs. Ensembl Xenopus
Match: RCOR3 (REST corepressor 3 [Source:NCBI gene;Acc:779496]) HSP 1 Score: 55.4546 bits (132), Expect = 8.238e-8 Identity = 25/67 (37.31%), Postives = 38/67 (56.72%), Query Frame = 2 Query: 281 WHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKN 481 WHK +++ DL N+ P D W D+ F A H K+F+ I+++ P+K+I LV YY +KK Sbjct: 111 WHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKSIASLVKYYYSWKKT 177
BLAST of SMED30006146 vs. Ensembl Mouse
Match: Rcor3 (REST corepressor 3 [Source:MGI Symbol;Acc:MGI:2441920]) HSP 1 Score: 57.3806 bits (137), Expect = 2.015e-8 Identity = 26/69 (37.68%), Postives = 40/69 (57.97%), Query Frame = 2 Query: 272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478 ++ WHK +++ DL N+ P D W D+ F A H K+F+ I+++ P+KTI LV YY +KK Sbjct: 120 MLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKK 188
BLAST of SMED30006146 vs. Ensembl Mouse
Match: Rcor3 (REST corepressor 3 [Source:MGI Symbol;Acc:MGI:2441920]) HSP 1 Score: 57.3806 bits (137), Expect = 2.015e-8 Identity = 26/69 (37.68%), Postives = 40/69 (57.97%), Query Frame = 2 Query: 272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478 ++ WHK +++ DL N+ P D W D+ F A H K+F+ I+++ P+KTI LV YY +KK Sbjct: 120 MLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKK 188
BLAST of SMED30006146 vs. Ensembl Mouse
Match: Rcor3 (REST corepressor 3 [Source:MGI Symbol;Acc:MGI:2441920]) HSP 1 Score: 57.3806 bits (137), Expect = 2.301e-8 Identity = 26/66 (39.39%), Postives = 38/66 (57.58%), Query Frame = 2 Query: 281 WHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478 WHK +++ DL N+ P D W D+ F A H K+F+ I+++ P+KTI LV YY +KK Sbjct: 123 WHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKK 188
BLAST of SMED30006146 vs. Ensembl Mouse
Match: Rcor3 (REST corepressor 3 [Source:MGI Symbol;Acc:MGI:2441920]) HSP 1 Score: 57.3806 bits (137), Expect = 2.301e-8 Identity = 26/66 (39.39%), Postives = 38/66 (57.58%), Query Frame = 2 Query: 281 WHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478 WHK +++ DL N+ P D W D+ F A H K+F+ I+++ P+KTI LV YY +KK Sbjct: 123 WHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKK 188
BLAST of SMED30006146 vs. Ensembl Mouse
Match: Rcor3 (REST corepressor 3 [Source:MGI Symbol;Acc:MGI:2441920]) HSP 1 Score: 56.6102 bits (135), Expect = 2.329e-8 Identity = 26/70 (37.14%), Postives = 40/70 (57.14%), Query Frame = 2 Query: 272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKN 481 ++ WHK +++ DL N+ P D W D+ F A H K+F+ I+++ P+KTI LV YY +KK Sbjct: 120 MLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKT 189
BLAST of SMED30006146 vs. UniProt/SwissProt
Match: sp|Q6NRZ0|RCOR2_XENLA (REST corepressor 2 OS=Xenopus laevis OX=8355 GN=rcor2 PE=2 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 9.833e-11 Identity = 25/70 (35.71%), Postives = 38/70 (54.29%), Query Frame = 2 Query: 272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKN 481 ++ WHK D++ DL N+ P + W+ D+ F A H K+F I+++ P K I LV YY +KK Sbjct: 107 MLLWHKHDVERSLADLANFTPFPEEWSVEDKVLFEQAFSFHGKSFQRIQQMLPEKLIPSLVKYYYSWKKT 176 HSP 2 Score: 33.4982 bits (75), Expect = 9.833e-11 Identity = 28/95 (29.47%), Postives = 52/95 (54.74%), Query Frame = 1 Query: 19 SVMLTRNRLTSHSLSEIDQG-----SFKNAVISVGKDFQAKLPQLEKLSSINYYKCLKRKYEVMLWSTSFVRSQDKLQETISNARIHYKAYKVAQ 288 S +++RNR S SL ++ + ++++I VG D+QA++P+ K + + ++ K +++WS S S KL E I+ A+ + Y V Q Sbjct: 12 SAVISRNRAKSDSLGNSEEESSEDEAPRDSMIRVGSDYQAQIPEC-KPDNTSPSGNVELKG-MLVWSPSQFVSDAKLNEYITMAKEKH-GYNVEQ 103
BLAST of SMED30006146 vs. UniProt/SwissProt
Match: sp|Q59E36|RCOR_DROME (REST corepressor OS=Drosophila melanogaster OX=7227 GN=CoRest PE=1 SV=2) HSP 1 Score: 58.151 bits (139), Expect = 9.379e-8 Identity = 27/66 (40.91%), Postives = 38/66 (57.58%), Query Frame = 2 Query: 281 WHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478 WHK DL+ DL N+ P D W D+ F A H K+F+ I+++ P+K+I LV YY +KK Sbjct: 159 WHKHDLERAVMDLANFTPFPDEWTIEDKVLFEQAFQFHGKSFHRIRQMLPDKSIASLVKYYYSWKK 224
BLAST of SMED30006146 vs. UniProt/SwissProt
Match: sp|Q90WN5|RCOR1_XENLA (REST corepressor 1 OS=Xenopus laevis OX=8355 GN=rcor1 PE=2 SV=1) HSP 1 Score: 57.7658 bits (138), Expect = 9.407e-8 Identity = 26/66 (39.39%), Postives = 38/66 (57.58%), Query Frame = 2 Query: 281 WHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478 WHK +++ DL+N+ P D W DR F A H K F+ I+++ P+K+I LV YY +KK Sbjct: 119 WHKHNIEKSLADLLNFTPFPDEWTVEDRVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKK 184
BLAST of SMED30006146 vs. UniProt/SwissProt
Match: sp|Q6P116|RCOR2_DANRE (REST corepressor 2 OS=Danio rerio OX=7955 GN=rcor2 PE=2 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 1.293e-7 Identity = 27/72 (37.50%), Postives = 40/72 (55.56%), Query Frame = 2 Query: 272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVT 487 ++ WHK D++ DL N+ P D W D+ F A H K+F+ I+++ P+K I LV YY +KK T Sbjct: 104 MLLWHKHDVEKSLADLANFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKMITSLVKYYYSWKKTRT 175
BLAST of SMED30006146 vs. UniProt/SwissProt
Match: sp|Q5ZJ40|RCOR3_CHICK (REST corepressor 3 OS=Gallus gallus OX=9031 GN=RCOR3 PE=2 SV=1) HSP 1 Score: 56.6102 bits (135), Expect = 1.623e-7 Identity = 26/69 (37.68%), Postives = 40/69 (57.97%), Query Frame = 2 Query: 272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478 ++ WHK +++ DL N+ P D W D+ F A H K+F+ I+++ P+KTI LV YY +KK Sbjct: 64 MLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKK 132
BLAST of SMED30006146 vs. TrEMBL
Match: A0A4E0RZY1 (REST corepressor 3 OS=Fasciola hepatica OX=6192 GN=D915_003948 PE=4 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.487e-18 Identity = 35/85 (41.18%), Postives = 54/85 (63.53%), Query Frame = 2 Query: 254 QEFTTRLIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVTVLRDMNV 508 +E L+ WHK D ++DL N+ P K W ++R FF+ALD +NK F+ IK+LFP +T+ +L+ YYL K+N L +M++ Sbjct: 85 EEQALALLTWHKADFHRAKSDLPNFSPLKYEWTPSERRVFFVALDYYNKQFHKIKKLFPTRTVNELILFYYLNKRNQQTLYEMSL 169 HSP 2 Score: 48.521 bits (114), Expect = 1.487e-18 Identity = 29/61 (47.54%), Postives = 34/61 (55.74%), Query Frame = 1 Query: 19 SVMLTRNRLTSHSLSEIDQGSFKNAVISVGKDFQAKLPQLEKLSSINYYKCLKRKYEVMLW 201 S MLTR RL S S S DQ +F+NAVI VG DFQ LP + ++N R V LW Sbjct: 2 SEMLTRGRL-SQSFSNSDQDAFENAVIRVGIDFQVDLPPFQGEPTLNIQNEPDRG--VALW 59
BLAST of SMED30006146 vs. TrEMBL
Match: A0A504Z712 (REST corepressor 3 OS=Fasciola gigantica OX=46835 GN=FGIG_10497 PE=4 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.562e-18 Identity = 35/85 (41.18%), Postives = 54/85 (63.53%), Query Frame = 2 Query: 254 QEFTTRLIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVTVLRDMNV 508 +E L+ WHK D ++DL N+ P K W ++R FF+ALD +NK F+ IK+LFP +T+ +L+ YYL K+N L +M++ Sbjct: 85 EEQALALLTWHKADFHRAKSDLPNFSPLKYEWTPSERRVFFVALDYYNKQFHKIKKLFPTRTVNELILFYYLNKRNQQTLYEMSL 169 HSP 2 Score: 48.521 bits (114), Expect = 1.562e-18 Identity = 29/61 (47.54%), Postives = 34/61 (55.74%), Query Frame = 1 Query: 19 SVMLTRNRLTSHSLSEIDQGSFKNAVISVGKDFQAKLPQLEKLSSINYYKCLKRKYEVMLW 201 S MLTR RL S S S DQ +F+NAVI VG DFQ LP + ++N R V LW Sbjct: 2 SEMLTRGRL-SQSFSNSDQDAFENAVIRVGIDFQVDLPPFQGEPTLNIQNEPDRG--VALW 59
BLAST of SMED30006146 vs. TrEMBL
Match: A0A0X3PK00 (ELM2 domain-containing protein OS=Schistocephalus solidus OX=70667 GN=TR119906 PE=4 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 1.405e-14 Identity = 33/85 (38.82%), Postives = 48/85 (56.47%), Query Frame = 2 Query: 254 QEFTTRLIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVTVLRDMNV 508 +E L+ WHK DL D N+ P+K W +R FF ALD + K F+ +K+LFP +T +LV YYL K+N L ++ + Sbjct: 128 EEQALALLTWHKFDLQRAAADFHNFSPRKYDWTHKERRIFFAALDFYCKQFHKVKKLFPKRTTCELVLFYYLNKRNQQTLYELTL 212 HSP 2 Score: 45.0542 bits (105), Expect = 1.405e-14 Identity = 23/60 (38.33%), Postives = 35/60 (58.33%), Query Frame = 1 Query: 22 VMLTRNRLTSHSLSEIDQGSFKNAVISVGKDFQAKLPQLEKLSSINYYKCLKRKYEVMLW 201 MLTR RLT +++ DQ +F+NA I +G D+QA LP + + + R E++LW Sbjct: 46 AMLTRGRLT-EVVTDSDQNAFENAFIRIGPDYQAFLPVADPKYPEQFVQAADR--EILLW 102
BLAST of SMED30006146 vs. TrEMBL
Match: A0A0X3P8S3 (ELM2 domain-containing protein (Fragment) OS=Schistocephalus solidus OX=70667 GN=TR119906 PE=4 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 1.464e-14 Identity = 33/85 (38.82%), Postives = 48/85 (56.47%), Query Frame = 2 Query: 254 QEFTTRLIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVTVLRDMNV 508 +E L+ WHK DL D N+ P+K W +R FF ALD + K F+ +K+LFP +T +LV YYL K+N L ++ + Sbjct: 110 EEQALALLTWHKFDLQRAAADFHNFSPRKYDWTHKERRIFFAALDFYCKQFHKVKKLFPKRTTCELVLFYYLNKRNQQTLYELTL 194 HSP 2 Score: 45.0542 bits (105), Expect = 1.464e-14 Identity = 23/60 (38.33%), Postives = 35/60 (58.33%), Query Frame = 1 Query: 22 VMLTRNRLTSHSLSEIDQGSFKNAVISVGKDFQAKLPQLEKLSSINYYKCLKRKYEVMLW 201 MLTR RLT +++ DQ +F+NA I +G D+QA LP + + + R E++LW Sbjct: 28 AMLTRGRLTE-VVTDSDQNAFENAFIRIGPDYQAFLPVADPKYPEQFVQAADR--EILLW 84
BLAST of SMED30006146 vs. TrEMBL
Match: A0A0X3PR84 (REST corepressor 2 OS=Schistocephalus solidus OX=70667 GN=RCOR2 PE=4 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 1.540e-14 Identity = 33/85 (38.82%), Postives = 48/85 (56.47%), Query Frame = 2 Query: 254 QEFTTRLIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVTVLRDMNV 508 +E L+ WHK DL D N+ P+K W +R FF ALD + K F+ +K+LFP +T +LV YYL K+N L ++ + Sbjct: 82 EEQALALLTWHKFDLQRAAADFHNFSPRKYDWTHKERRIFFAALDFYCKQFHKVKKLFPKRTTCELVLFYYLNKRNQQTLYELTL 166 HSP 2 Score: 45.0542 bits (105), Expect = 1.540e-14 Identity = 23/59 (38.98%), Postives = 35/59 (59.32%), Query Frame = 1 Query: 25 MLTRNRLTSHSLSEIDQGSFKNAVISVGKDFQAKLPQLEKLSSINYYKCLKRKYEVMLW 201 MLTR RLT +++ DQ +F+NA I +G D+QA LP + + + R E++LW Sbjct: 1 MLTRGRLT-EVVTDSDQNAFENAFIRIGPDYQAFLPVADPKYPEQFVQAADR--EILLW 56
BLAST of SMED30006146 vs. Ensembl Cavefish
Match: rcor2 (REST corepressor 2 [Source:NCBI gene;Acc:103025587]) HSP 1 Score: 58.151 bits (139), Expect = 9.063e-9 Identity = 27/72 (37.50%), Postives = 40/72 (55.56%), Query Frame = 2 Query: 272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVT 487 ++ WHK D++ DL N+ P D W D+ F A H K+F+ I+++ P+K I LV YY +KK T Sbjct: 108 MLLWHKHDVERSLADLANFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKLISSLVKYYYSWKKTRT 179
BLAST of SMED30006146 vs. Ensembl Cavefish
Match: ENSAMXT00000004792.2 (pep primary_assembly:Astyanax_mexicanus-2.0:5:139106:154149:-1 gene:ENSAMXG00000004677.2 transcript:ENSAMXT00000004792.2 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 55.0694 bits (131), Expect = 6.675e-8 Identity = 25/69 (36.23%), Postives = 40/69 (57.97%), Query Frame = 2 Query: 272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478 ++ WHK +++ DL N+ P D W D+ F A H K+F+ I+++ P+K+I LV YY +KK Sbjct: 111 MLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKSISSLVKYYYSWKK 179
BLAST of SMED30006146 vs. Ensembl Cavefish
Match: rcor1 (REST corepressor 1 [Source:ZFIN;Acc:ZDB-GENE-050506-79]) HSP 1 Score: 53.5286 bits (127), Expect = 2.033e-7 Identity = 24/69 (34.78%), Postives = 38/69 (55.07%), Query Frame = 2 Query: 272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478 ++ WHK +++ DL N+ P D W D+ F H K F+ I+++ P+K+I LV YY +KK Sbjct: 118 MLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQGFSFHGKTFHRIQQMLPDKSIASLVRFYYSWKK 186
BLAST of SMED30006146 vs. Ensembl Sea Lamprey
Match: rcor1 (REST corepressor 1 [Source:ZFIN;Acc:ZDB-GENE-050506-79]) HSP 1 Score: 62.3882 bits (150), Expect = 5.581e-11 Identity = 27/78 (34.62%), Postives = 44/78 (56.41%), Query Frame = 2 Query: 272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVTVLRDMN 505 L+ WH +++ D+ N+ P D W +RA F A H K+F++I+++ P K+IG LV YY +K+ T M+ Sbjct: 166 LLLWHAHNIERSLADMPNFAPDADEWGETERALFEQAYGFHGKSFHLIQQMLPGKSIGSLVRHYYTWKQTRTRTSVMD 243
BLAST of SMED30006146 vs. Ensembl Sea Lamprey
Match: rcor1 (REST corepressor 1 [Source:ZFIN;Acc:ZDB-GENE-050506-79]) HSP 1 Score: 59.6918 bits (143), Expect = 7.201e-11 Identity = 27/72 (37.50%), Postives = 42/72 (58.33%), Query Frame = 2 Query: 272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVT 487 ++ WHK +++ DL N+ P D W D+ F A H K+F+ I+++ P+K+IG LV YY +KK T Sbjct: 49 MLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKSIGSLVRYYYAWKKTRT 120
BLAST of SMED30006146 vs. Ensembl Sea Lamprey
Match: rcor1 (REST corepressor 1 [Source:ZFIN;Acc:ZDB-GENE-050506-79]) HSP 1 Score: 62.003 bits (149), Expect = 7.304e-11 Identity = 26/72 (36.11%), Postives = 42/72 (58.33%), Query Frame = 2 Query: 272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVT 487 L+ WH +++ D+ N+ P D W +RA F A H K+F++I+++ P K+IG LV YY +K+ T Sbjct: 137 LLLWHAHNIERSLADMPNFAPDADEWGETERALFEQAYGFHGKSFHLIQQMLPGKSIGSLVRHYYTWKQTRT 208
BLAST of SMED30006146 vs. Ensembl Nematostella
Match: EDO33362 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SSF7]) HSP 1 Score: 58.151 bits (139), Expect = 1.880e-9 Identity = 25/70 (35.71%), Postives = 41/70 (58.57%), Query Frame = 2 Query: 272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKN 481 ++ WHK +++ DL N+ P D W+ D+ F A SH K+F I+++ P+K++ LV YY +KK Sbjct: 70 MLFWHKHNIEKSLTDLANFTPFPDEWSLEDKVLFEQAFGSHGKSFRRIQQMLPDKSVSSLVKYYYSWKKT 139
BLAST of SMED30006146 vs. Ensembl Medaka
Match: rcor2 (REST corepressor 2 [Source:NCBI gene;Acc:101173414]) HSP 1 Score: 60.077 bits (144), Expect = 2.341e-9 Identity = 30/82 (36.59%), Postives = 44/82 (53.66%), Query Frame = 2 Query: 242 LFLMQEFTTRLIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVT 487 L L + F ++ WHK D++ DL N+ P D W D+ F A H K+F+ I+++ P+K I LV YY +KK T Sbjct: 92 LPLCKTFWNCMLLWHKHDVERSLADLANFTPFPDEWTIEDKVLFEQAFSFHGKSFHRIQQMLPDKLISSLVKYYYSWKKTRT 173
BLAST of SMED30006146 vs. Ensembl Medaka
Match: rcor2 (REST corepressor 2 [Source:NCBI gene;Acc:101173414]) HSP 1 Score: 58.151 bits (139), Expect = 8.914e-9 Identity = 27/72 (37.50%), Postives = 40/72 (55.56%), Query Frame = 2 Query: 272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVT 487 ++ WHK D++ DL N+ P D W D+ F A H K+F+ I+++ P+K I LV YY +KK T Sbjct: 109 MLLWHKHDVERSLADLANFTPFPDEWTIEDKVLFEQAFSFHGKSFHRIQQMLPDKLISSLVKYYYSWKKTRT 180
BLAST of SMED30006146 vs. Ensembl Medaka
Match: rcor1 (REST corepressor 1 [Source:NCBI gene;Acc:101161362]) HSP 1 Score: 56.225 bits (134), Expect = 3.336e-8 Identity = 25/70 (35.71%), Postives = 41/70 (58.57%), Query Frame = 2 Query: 272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKN 481 ++ WHK +++ DL N+ P D W DR F A H K+F+ I+++ P+K++ LV YY +KK+ Sbjct: 113 MLFWHKHNIEKSLADLPNFTPFPDEWTVEDRVLFEQAFSFHGKSFHRIQQMLPDKSMASLVRFYYSWKKS 182
BLAST of SMED30006146 vs. Ensembl Medaka
Match: rcor3 (REST corepressor 3 [Source:NCBI gene;Acc:101170567]) HSP 1 Score: 55.0694 bits (131), Expect = 8.689e-8 Identity = 25/66 (37.88%), Postives = 38/66 (57.58%), Query Frame = 2 Query: 281 WHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478 WHK +++ DL N+ P D W D+ F A H K+F+ I+++ P+K+I LV YY +KK Sbjct: 164 WHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKSISSLVKYYYSWKK 229
BLAST of SMED30006146 vs. Ensembl Medaka
Match: rcor3 (REST corepressor 3 [Source:NCBI gene;Acc:101170567]) HSP 1 Score: 54.6842 bits (130), Expect = 9.886e-8 Identity = 25/69 (36.23%), Postives = 40/69 (57.97%), Query Frame = 2 Query: 272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478 ++ WHK +++ DL N+ P D W D+ F A H K+F+ I+++ P+K+I LV YY +KK Sbjct: 161 MLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKSISSLVKYYYSWKK 229
BLAST of SMED30006146 vs. Planmine SMEST
Match: SMESG000032810.1 (SMESG000032810.1) HSP 1 Score: 739.954 bits (1909), Expect = 0.000e+0 Identity = 356/357 (99.72%), Postives = 357/357 (100.00%), Query Frame = 2 Query: 185 MKLCCGVRVLYDHKINYKKLFLMQEFTTRLIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVTVLRDMNVLLFPGAPLGSSVLHKIKRYENAMPKHFVSKFGAIIKNLPLSNNLNADLTNQTLWGDHALAESVKSVMRQIEINQNLHCGNRFTEQTRDILFDQGKYVSKKMPKRQHHCINEHKQWLRDFYHSYNHQELIQYLHSGDDNKHDILNQEIKDSSNLIKTIESEIMNKSKQLIDLFKHYKQQYPQFNAKWTESDIQLAQLAIKEAGGDIKFVASALGDKTVNMVKHFISLYSQRLQIDEGIWQNLLSNSANKA 1255 MKLCCGVRVLYDHKINYKKLFLMQEFTTRLIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVTVLRDMNVLLFPGAPLGSSVLHKIKRYENAMPKHFVSKFGAIIKNLPLSNNLNADLTNQTLWGDHALAESVKSVMRQIEINQNLHCGNRFTEQTRDILFDQGKYVSKKMPKRQHHCINEHKQWLRDFYHSYNHQELIQYLHSGDDNKHD+LNQEIKDSSNLIKTIESEIMNKSKQLIDLFKHYKQQYPQFNAKWTESDIQLAQLAIKEAGGDIKFVASALGDKTVNMVKHFISLYSQRLQIDEGIWQNLLSNSANKA Sbjct: 1 MKLCCGVRVLYDHKINYKKLFLMQEFTTRLIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVTVLRDMNVLLFPGAPLGSSVLHKIKRYENAMPKHFVSKFGAIIKNLPLSNNLNADLTNQTLWGDHALAESVKSVMRQIEINQNLHCGNRFTEQTRDILFDQGKYVSKKMPKRQHHCINEHKQWLRDFYHSYNHQELIQYLHSGDDNKHDVLNQEIKDSSNLIKTIESEIMNKSKQLIDLFKHYKQQYPQFNAKWTESDIQLAQLAIKEAGGDIKFVASALGDKTVNMVKHFISLYSQRLQIDEGIWQNLLSNSANKA 357
BLAST of SMED30006146 vs. Planmine SMEST
Match: SMESG000032810.1 (SMESG000032810.1) HSP 1 Score: 733.406 bits (1892), Expect = 0.000e+0 Identity = 355/362 (98.07%), Postives = 357/362 (98.62%), Query Frame = 2 Query: 185 MKLCCGVRVLYDHKINYKKLFLMQEFTTR-----LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVTVLRDMNVLLFPGAPLGSSVLHKIKRYENAMPKHFVSKFGAIIKNLPLSNNLNADLTNQTLWGDHALAESVKSVMRQIEINQNLHCGNRFTEQTRDILFDQGKYVSKKMPKRQHHCINEHKQWLRDFYHSYNHQELIQYLHSGDDNKHDILNQEIKDSSNLIKTIESEIMNKSKQLIDLFKHYKQQYPQFNAKWTESDIQLAQLAIKEAGGDIKFVASALGDKTVNMVKHFISLYSQRLQIDEGIWQNLLSNSANKA 1255 MKLCCGVRVLYDHKINYKKLFLMQEFTT+ LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVTVLRDMNVLLFPGAPLGSSVLHKIKRYENAMPKHFVSKFGAIIKNLPLSNNLNADLTNQTLWGDHALAESVKSVMRQIEINQNLHCGNRFTEQTRDILFDQGKYVSKKMPKRQHHCINEHKQWLRDFYHSYNHQELIQYLHSGDDNKHD+LNQEIKDSSNLIKTIESEIMNKSKQLIDLFKHYKQQYPQFNAKWTESDIQLAQLAIKEAGGDIKFVASALGDKTVNMVKHFISLYSQRLQIDEGIWQNLLSNSANKA Sbjct: 1 MKLCCGVRVLYDHKINYKKLFLMQEFTTKEMTLGLIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVTVLRDMNVLLFPGAPLGSSVLHKIKRYENAMPKHFVSKFGAIIKNLPLSNNLNADLTNQTLWGDHALAESVKSVMRQIEINQNLHCGNRFTEQTRDILFDQGKYVSKKMPKRQHHCINEHKQWLRDFYHSYNHQELIQYLHSGDDNKHDVLNQEIKDSSNLIKTIESEIMNKSKQLIDLFKHYKQQYPQFNAKWTESDIQLAQLAIKEAGGDIKFVASALGDKTVNMVKHFISLYSQRLQIDEGIWQNLLSNSANKA 362
BLAST of SMED30006146 vs. Planmine SMEST
Match: SMESG000032810.1 (SMESG000032810.1) HSP 1 Score: 694.501 bits (1791), Expect = 0.000e+0 Identity = 334/335 (99.70%), Postives = 335/335 (100.00%), Query Frame = 2 Query: 251 MQEFTTRLIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVTVLRDMNVLLFPGAPLGSSVLHKIKRYENAMPKHFVSKFGAIIKNLPLSNNLNADLTNQTLWGDHALAESVKSVMRQIEINQNLHCGNRFTEQTRDILFDQGKYVSKKMPKRQHHCINEHKQWLRDFYHSYNHQELIQYLHSGDDNKHDILNQEIKDSSNLIKTIESEIMNKSKQLIDLFKHYKQQYPQFNAKWTESDIQLAQLAIKEAGGDIKFVASALGDKTVNMVKHFISLYSQRLQIDEGIWQNLLSNSANKA 1255 MQEFTTRLIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVTVLRDMNVLLFPGAPLGSSVLHKIKRYENAMPKHFVSKFGAIIKNLPLSNNLNADLTNQTLWGDHALAESVKSVMRQIEINQNLHCGNRFTEQTRDILFDQGKYVSKKMPKRQHHCINEHKQWLRDFYHSYNHQELIQYLHSGDDNKHD+LNQEIKDSSNLIKTIESEIMNKSKQLIDLFKHYKQQYPQFNAKWTESDIQLAQLAIKEAGGDIKFVASALGDKTVNMVKHFISLYSQRLQIDEGIWQNLLSNSANKA Sbjct: 1 MQEFTTRLIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVTVLRDMNVLLFPGAPLGSSVLHKIKRYENAMPKHFVSKFGAIIKNLPLSNNLNADLTNQTLWGDHALAESVKSVMRQIEINQNLHCGNRFTEQTRDILFDQGKYVSKKMPKRQHHCINEHKQWLRDFYHSYNHQELIQYLHSGDDNKHDVLNQEIKDSSNLIKTIESEIMNKSKQLIDLFKHYKQQYPQFNAKWTESDIQLAQLAIKEAGGDIKFVASALGDKTVNMVKHFISLYSQRLQIDEGIWQNLLSNSANKA 335 The following BLAST results are available for this feature:
BLAST of SMED30006146 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of SMED30006146 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30006146 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of SMED30006146 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of SMED30006146 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of SMED30006146 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of SMED30006146 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of SMED30006146 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30006146 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 3
BLAST of SMED30006146 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 3
BLAST of SMED30006146 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30006146 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of SMED30006146 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of SMED30006146 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 3
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30006146 ID=SMED30006146|Name=SMED30006146|organism=Schmidtea mediterranea sexual|type=transcript|length=1273bpback to top protein sequence of SMED30006146-orf-1 >SMED30006146-orf-1 ID=SMED30006146-orf-1|Name=SMED30006146-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=105bp LKFNEQSVMLTRNRLTSHSLSEIDQGSFKNAVISVGKDFQAKLPQLEKLSback to top protein sequence of SMED30006146-orf-2 >SMED30006146-orf-2 ID=SMED30006146-orf-2|Name=SMED30006146-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=358bp MKLCCGVRVLYDHKINYKKLFLMQEFTTRLIKWHKGDLDAVQNDLMNYVPback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
|