SMED30006146

Overview


Name	SMED30006146
Smed ID	SMED30006146
Length (bp)	1273

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of SMED30006146 (SMED30006146) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30006146 (SMED30006146) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30006146 (SMED30006146) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30006146 (SMED30006146) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30006146

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 2

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication	Specimen	Lifecycle	Evidence
X1 cell	SMED30006146	SMESG000032810.1	SmedASXL_006651	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
nervous system	SMED30006146	SMESG000032810.1	dd_Smed_v4_6374_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018

Note: Hover over icons to view figure legend

Alignments

SMED30006146 aligns in the following genomic locations:


Alignment Location	Alignment Score
v31.002967:52700..54519 +	6158
v31.011786:12647..14466 +	6153

Homology

[Close]

BLAST of SMED30006146 vs. Ensembl Human
Match: RCOR3 (REST corepressor 3 [Source:HGNC Symbol;Acc:HGNC:25594])

HSP 1 Score: 56.6102 bits (135), Expect = 3.847e-9
Identity = 26/70 (37.14%), Postives = 40/70 (57.14%), Query Frame = 2

Query:  272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKN 481
            ++ WHK +++    DL N+ P  D W   D+  F  A   H K+F+ I+++ P+KTI  LV  YY +KK 
Sbjct:   64 MLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKT 133

[Close]

BLAST of SMED30006146 vs. Ensembl Human
Match: RCOR3 (REST corepressor 3 [Source:HGNC Symbol;Acc:HGNC:25594])

HSP 1 Score: 57.3806 bits (137), Expect = 2.315e-8
Identity = 26/70 (37.14%), Postives = 40/70 (57.14%), Query Frame = 2

Query:  272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKN 481
            ++ WHK +++    DL N+ P  D W   D+  F  A   H K+F+ I+++ P+KTI  LV  YY +KK 
Sbjct:  154 MLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKT 223

[Close]

BLAST of SMED30006146 vs. Ensembl Human
Match: RCOR3 (REST corepressor 3 [Source:HGNC Symbol;Acc:HGNC:25594])

HSP 1 Score: 57.3806 bits (137), Expect = 2.911e-8
Identity = 26/66 (39.39%), Postives = 38/66 (57.58%), Query Frame = 2

Query:  281 WHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478
            WHK +++    DL N+ P  D W   D+  F  A   H K+F+ I+++ P+KTI  LV  YY +KK
Sbjct:   67 WHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKK 132

[Close]

BLAST of SMED30006146 vs. Ensembl Human
Match: RCOR3 (REST corepressor 3 [Source:HGNC Symbol;Acc:HGNC:25594])

HSP 1 Score: 56.9954 bits (136), Expect = 3.334e-8
Identity = 26/69 (37.68%), Postives = 40/69 (57.97%), Query Frame = 2

Query:  272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478
            ++ WHK +++    DL N+ P  D W   D+  F  A   H K+F+ I+++ P+KTI  LV  YY +KK
Sbjct:  122 MLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKK 190

[Close]

BLAST of SMED30006146 vs. Ensembl Human
Match: RCOR3 (REST corepressor 3 [Source:HGNC Symbol;Acc:HGNC:25594])

HSP 1 Score: 56.9954 bits (136), Expect = 3.448e-8
Identity = 26/66 (39.39%), Postives = 38/66 (57.58%), Query Frame = 2

Query:  281 WHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478
            WHK +++    DL N+ P  D W   D+  F  A   H K+F+ I+++ P+KTI  LV  YY +KK
Sbjct:  125 WHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKK 190

[Close]

BLAST of SMED30006146 vs. Ensembl Fly
Match: CoRest (gene:FBgn0261573 transcript:FBtr0336667)

HSP 1 Score: 58.5362 bits (140), Expect = 2.637e-9
Identity = 27/66 (40.91%), Postives = 38/66 (57.58%), Query Frame = 2

Query:  281 WHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478
            WHK DL+    DL N+ P  D W   D+  F  A   H K+F+ I+++ P+K+I  LV  YY +KK
Sbjct:  159 WHKHDLERAVMDLANFTPFPDEWTIEDKVLFEQAFQFHGKSFHRIRQMLPDKSIASLVKYYYSWKK 224

[Close]

BLAST of SMED30006146 vs. Ensembl Fly
Match: CoRest (gene:FBgn0261573 transcript:FBtr0302861)

HSP 1 Score: 58.5362 bits (140), Expect = 2.831e-9
Identity = 27/66 (40.91%), Postives = 38/66 (57.58%), Query Frame = 2

Query:  281 WHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478
            WHK DL+    DL N+ P  D W   D+  F  A   H K+F+ I+++ P+K+I  LV  YY +KK
Sbjct:  159 WHKHDLERAVMDLANFTPFPDEWTIEDKVLFEQAFQFHGKSFHRIRQMLPDKSIASLVKYYYSWKK 224

[Close]

BLAST of SMED30006146 vs. Ensembl Fly
Match: CoRest (gene:FBgn0261573 transcript:FBtr0302860)

HSP 1 Score: 58.5362 bits (140), Expect = 2.831e-9
Identity = 27/66 (40.91%), Postives = 38/66 (57.58%), Query Frame = 2

Query:  281 WHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478
            WHK DL+    DL N+ P  D W   D+  F  A   H K+F+ I+++ P+K+I  LV  YY +KK
Sbjct:  159 WHKHDLERAVMDLANFTPFPDEWTIEDKVLFEQAFQFHGKSFHRIRQMLPDKSIASLVKYYYSWKK 224

[Close]

BLAST of SMED30006146 vs. Ensembl Fly
Match: CoRest (gene:FBgn0261573 transcript:FBtr0302859)

HSP 1 Score: 58.5362 bits (140), Expect = 2.831e-9
Identity = 27/66 (40.91%), Postives = 38/66 (57.58%), Query Frame = 2

Query:  281 WHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478
            WHK DL+    DL N+ P  D W   D+  F  A   H K+F+ I+++ P+K+I  LV  YY +KK
Sbjct:  159 WHKHDLERAVMDLANFTPFPDEWTIEDKVLFEQAFQFHGKSFHRIRQMLPDKSIASLVKYYYSWKK 224

[Close]

BLAST of SMED30006146 vs. Ensembl Fly
Match: CoRest (gene:FBgn0261573 transcript:FBtr0302864)

HSP 1 Score: 58.151 bits (139), Expect = 9.356e-9
Identity = 27/66 (40.91%), Postives = 38/66 (57.58%), Query Frame = 2

Query:  281 WHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478
            WHK DL+    DL N+ P  D W   D+  F  A   H K+F+ I+++ P+K+I  LV  YY +KK
Sbjct:  159 WHKHDLERAVMDLANFTPFPDEWTIEDKVLFEQAFQFHGKSFHRIRQMLPDKSIASLVKYYYSWKK 224

[Close]

BLAST of SMED30006146 vs. Ensembl Zebrafish
Match: rcor2 (REST corepressor 2 [Source:NCBI gene;Acc:402934])

HSP 1 Score: 57.7658 bits (138), Expect = 1.401e-9
Identity = 27/72 (37.50%), Postives = 40/72 (55.56%), Query Frame = 2

Query:  272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVT 487
            ++ WHK D++    DL N+ P  D W   D+  F  A   H K+F+ I+++ P+K I  LV  YY +KK  T
Sbjct:   66 MLLWHKHDVEKSLADLANFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKMITSLVKYYYSWKKTRT 137

[Close]

BLAST of SMED30006146 vs. Ensembl Zebrafish
Match: rcor2 (REST corepressor 2 [Source:NCBI gene;Acc:402934])

HSP 1 Score: 58.151 bits (139), Expect = 1.734e-9
Identity = 27/72 (37.50%), Postives = 40/72 (55.56%), Query Frame = 2

Query:  272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVT 487
            ++ WHK D++    DL N+ P  D W   D+  F  A   H K+F+ I+++ P+K I  LV  YY +KK  T
Sbjct:  104 MLLWHKHDVEKSLADLANFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKMITSLVKYYYSWKKTRT 175

[Close]

BLAST of SMED30006146 vs. Ensembl Zebrafish
Match: rcor2 (REST corepressor 2 [Source:NCBI gene;Acc:402934])

HSP 1 Score: 57.7658 bits (138), Expect = 1.857e-9
Identity = 27/72 (37.50%), Postives = 40/72 (55.56%), Query Frame = 2

Query:  272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVT 487
            ++ WHK D++    DL N+ P  D W   D+  F  A   H K+F+ I+++ P+K I  LV  YY +KK  T
Sbjct:   66 MLLWHKHDVEKSLADLANFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKMITSLVKYYYSWKKTRT 137

[Close]

BLAST of SMED30006146 vs. Ensembl Zebrafish
Match: rcor3 (REST corepressor 3 [Source:ZFIN;Acc:ZDB-GENE-050208-371])

HSP 1 Score: 54.6842 bits (130), Expect = 2.782e-9
Identity = 25/66 (37.88%), Postives = 38/66 (57.58%), Query Frame = 2

Query:  281 WHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478
            WHK +++    DL N+ P  D W   D+  F  A   H K+F+ I+++ P+K+I  LV  YY +KK
Sbjct:  111 WHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKSISSLVKYYYSWKK 176

HSP 2 Score: 26.1794 bits (56), Expect = 2.782e-9
Identity = 20/64 (31.25%), Postives = 31/64 (48.44%), Query Frame = 1

Query:   97 ISVGKDFQAKLPQLEKLSSINYYKCLKRKYEVMLWSTSFVRSQDKLQETISNARIHYKAYKVAQ 288
            + VG D+QA +P+ +  SS  Y    K    +++WS        KL E I+ A+  +  Y V Q
Sbjct:   45 MRVGSDYQANIPEFDPGSS-KYSD--KDSGGMLVWSPHHTILDSKLDEYIAIAKEKH-GYNVEQ 104

[Close]

BLAST of SMED30006146 vs. Ensembl Zebrafish
Match: rcor2 (REST corepressor 2 [Source:NCBI gene;Acc:402934])

HSP 1 Score: 57.3806 bits (137), Expect = 1.713e-8
Identity = 27/72 (37.50%), Postives = 40/72 (55.56%), Query Frame = 2

Query:  272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVT 487
            ++ WHK D++    DL N+ P  D W   D+  F  A   H K+F+ I+++ P+K I  LV  YY +KK  T
Sbjct:  104 MLLWHKHDVEKSLADLANFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKMITSLVKYYYSWKKTRT 175

[Close]

BLAST of SMED30006146 vs. Ensembl Xenopus
Match: rcor2 (REST corepressor 2 [Source:NCBI gene;Acc:100038078])

HSP 1 Score: 54.6842 bits (130), Expect = 1.238e-11
Identity = 25/70 (35.71%), Postives = 38/70 (54.29%), Query Frame = 2

Query:  272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKN 481
            ++ WHK D++    DL N+ P  + W+  D+  F  A   H K F  I+++ P+K I  LV  YY +KK 
Sbjct:  107 MLLWHKHDVERSLADLANFTPFPEEWSVEDKVLFEQAFSFHGKCFQRIQQMLPDKLIPSLVKYYYSWKKT 176

HSP 2 Score: 35.039 bits (79), Expect = 1.238e-11
Identity = 30/96 (31.25%), Postives = 54/96 (56.25%), Query Frame = 1

Query:   19 SVMLTRNRLTSHSLSEIDQG-----SFKNAVISVGKDFQAKLPQLE-KLSSINYYKCLKRKYEVMLWSTSFVRSQDKLQETISNARIHYKAYKVAQ 288
            S +++RNR+ S SL   ++      + ++++I VG D+QA++P+ + + SS +    LK    +++WS S   S  KL E I+ A+  +  Y V Q
Sbjct:   12 SAVISRNRVKSDSLGNSEEESSEDEAPRDSMIRVGSDYQAQIPECKPEYSSPSSNVELK---GMLVWSPSQFVSDAKLNEYITMAKEKH-GYNVEQ 103

[Close]

BLAST of SMED30006146 vs. Ensembl Xenopus
Match: RCOR3 (REST corepressor 3 [Source:NCBI gene;Acc:779496])

HSP 1 Score: 55.8398 bits (133), Expect = 5.981e-8
Identity = 25/67 (37.31%), Postives = 38/67 (56.72%), Query Frame = 2

Query:  281 WHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKN 481
            WHK +++    DL N+ P  D W   D+  F  A   H K+F+ I+++ P+K+I  LV  YY +KK 
Sbjct:  110 WHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKSIASLVKYYYSWKKT 176

[Close]

BLAST of SMED30006146 vs. Ensembl Xenopus
Match: RCOR3 (REST corepressor 3 [Source:NCBI gene;Acc:779496])

HSP 1 Score: 55.8398 bits (133), Expect = 7.137e-8
Identity = 25/67 (37.31%), Postives = 38/67 (56.72%), Query Frame = 2

Query:  281 WHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKN 481
            WHK +++    DL N+ P  D W   D+  F  A   H K+F+ I+++ P+K+I  LV  YY +KK 
Sbjct:   57 WHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKSIASLVKYYYSWKKT 123

[Close]

BLAST of SMED30006146 vs. Ensembl Xenopus
Match: RCOR3 (REST corepressor 3 [Source:NCBI gene;Acc:779496])

HSP 1 Score: 55.4546 bits (132), Expect = 7.648e-8
Identity = 25/70 (35.71%), Postives = 40/70 (57.14%), Query Frame = 2

Query:  272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKN 481
            ++ WHK +++    DL N+ P  D W   D+  F  A   H K+F+ I+++ P+K+I  LV  YY +KK 
Sbjct:  108 MLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKSIASLVKYYYSWKKT 177

[Close]

BLAST of SMED30006146 vs. Ensembl Xenopus
Match: RCOR3 (REST corepressor 3 [Source:NCBI gene;Acc:779496])

HSP 1 Score: 55.4546 bits (132), Expect = 8.238e-8
Identity = 25/67 (37.31%), Postives = 38/67 (56.72%), Query Frame = 2

Query:  281 WHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKN 481
            WHK +++    DL N+ P  D W   D+  F  A   H K+F+ I+++ P+K+I  LV  YY +KK 
Sbjct:  111 WHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKSIASLVKYYYSWKKT 177

[Close]

BLAST of SMED30006146 vs. Ensembl Mouse
Match: Rcor3 (REST corepressor 3 [Source:MGI Symbol;Acc:MGI:2441920])

HSP 1 Score: 57.3806 bits (137), Expect = 2.015e-8
Identity = 26/69 (37.68%), Postives = 40/69 (57.97%), Query Frame = 2

Query:  272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478
            ++ WHK +++    DL N+ P  D W   D+  F  A   H K+F+ I+++ P+KTI  LV  YY +KK
Sbjct:  120 MLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKK 188

[Close]

Query:  272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478
            ++ WHK +++    DL N+ P  D W   D+  F  A   H K+F+ I+++ P+KTI  LV  YY +KK
Sbjct:  120 MLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKK 188

[Close]

BLAST of SMED30006146 vs. Ensembl Mouse
Match: Rcor3 (REST corepressor 3 [Source:MGI Symbol;Acc:MGI:2441920])

HSP 1 Score: 57.3806 bits (137), Expect = 2.301e-8
Identity = 26/66 (39.39%), Postives = 38/66 (57.58%), Query Frame = 2

Query:  281 WHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478
            WHK +++    DL N+ P  D W   D+  F  A   H K+F+ I+++ P+KTI  LV  YY +KK
Sbjct:  123 WHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKK 188

[Close]

Query:  281 WHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478
            WHK +++    DL N+ P  D W   D+  F  A   H K+F+ I+++ P+KTI  LV  YY +KK
Sbjct:  123 WHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKK 188

[Close]

BLAST of SMED30006146 vs. Ensembl Mouse
Match: Rcor3 (REST corepressor 3 [Source:MGI Symbol;Acc:MGI:2441920])

HSP 1 Score: 56.6102 bits (135), Expect = 2.329e-8
Identity = 26/70 (37.14%), Postives = 40/70 (57.14%), Query Frame = 2

Query:  272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKN 481
            ++ WHK +++    DL N+ P  D W   D+  F  A   H K+F+ I+++ P+KTI  LV  YY +KK 
Sbjct:  120 MLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKT 189

[Close]

BLAST of SMED30006146 vs. UniProt/SwissProt
Match: sp|Q6NRZ0|RCOR2_XENLA (REST corepressor 2 OS=Xenopus laevis OX=8355 GN=rcor2 PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 9.833e-11
Identity = 25/70 (35.71%), Postives = 38/70 (54.29%), Query Frame = 2

Query:  272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKN 481
            ++ WHK D++    DL N+ P  + W+  D+  F  A   H K+F  I+++ P K I  LV  YY +KK 
Sbjct:  107 MLLWHKHDVERSLADLANFTPFPEEWSVEDKVLFEQAFSFHGKSFQRIQQMLPEKLIPSLVKYYYSWKKT 176

HSP 2 Score: 33.4982 bits (75), Expect = 9.833e-11
Identity = 28/95 (29.47%), Postives = 52/95 (54.74%), Query Frame = 1

Query:   19 SVMLTRNRLTSHSLSEIDQG-----SFKNAVISVGKDFQAKLPQLEKLSSINYYKCLKRKYEVMLWSTSFVRSQDKLQETISNARIHYKAYKVAQ 288
            S +++RNR  S SL   ++      + ++++I VG D+QA++P+  K  + +    ++ K  +++WS S   S  KL E I+ A+  +  Y V Q
Sbjct:   12 SAVISRNRAKSDSLGNSEEESSEDEAPRDSMIRVGSDYQAQIPEC-KPDNTSPSGNVELKG-MLVWSPSQFVSDAKLNEYITMAKEKH-GYNVEQ 103

[Close]

BLAST of SMED30006146 vs. UniProt/SwissProt
Match: sp|Q59E36|RCOR_DROME (REST corepressor OS=Drosophila melanogaster OX=7227 GN=CoRest PE=1 SV=2)

HSP 1 Score: 58.151 bits (139), Expect = 9.379e-8
Identity = 27/66 (40.91%), Postives = 38/66 (57.58%), Query Frame = 2

Query:  281 WHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478
            WHK DL+    DL N+ P  D W   D+  F  A   H K+F+ I+++ P+K+I  LV  YY +KK
Sbjct:  159 WHKHDLERAVMDLANFTPFPDEWTIEDKVLFEQAFQFHGKSFHRIRQMLPDKSIASLVKYYYSWKK 224

[Close]

BLAST of SMED30006146 vs. UniProt/SwissProt
Match: sp|Q90WN5|RCOR1_XENLA (REST corepressor 1 OS=Xenopus laevis OX=8355 GN=rcor1 PE=2 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 9.407e-8
Identity = 26/66 (39.39%), Postives = 38/66 (57.58%), Query Frame = 2

Query:  281 WHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478
            WHK +++    DL+N+ P  D W   DR  F  A   H K F+ I+++ P+K+I  LV  YY +KK
Sbjct:  119 WHKHNIEKSLADLLNFTPFPDEWTVEDRVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKK 184

[Close]

BLAST of SMED30006146 vs. UniProt/SwissProt
Match: sp|Q6P116|RCOR2_DANRE (REST corepressor 2 OS=Danio rerio OX=7955 GN=rcor2 PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 1.293e-7
Identity = 27/72 (37.50%), Postives = 40/72 (55.56%), Query Frame = 2

Query:  272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVT 487
            ++ WHK D++    DL N+ P  D W   D+  F  A   H K+F+ I+++ P+K I  LV  YY +KK  T
Sbjct:  104 MLLWHKHDVEKSLADLANFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKMITSLVKYYYSWKKTRT 175

[Close]

BLAST of SMED30006146 vs. UniProt/SwissProt
Match: sp|Q5ZJ40|RCOR3_CHICK (REST corepressor 3 OS=Gallus gallus OX=9031 GN=RCOR3 PE=2 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 1.623e-7
Identity = 26/69 (37.68%), Postives = 40/69 (57.97%), Query Frame = 2

Query:  272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478
            ++ WHK +++    DL N+ P  D W   D+  F  A   H K+F+ I+++ P+KTI  LV  YY +KK
Sbjct:   64 MLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKK 132

[Close]

BLAST of SMED30006146 vs. TrEMBL
Match: A0A4E0RZY1 (REST corepressor 3 OS=Fasciola hepatica OX=6192 GN=D915_003948 PE=4 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.487e-18
Identity = 35/85 (41.18%), Postives = 54/85 (63.53%), Query Frame = 2

Query:  254 QEFTTRLIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVTVLRDMNV 508
            +E    L+ WHK D    ++DL N+ P K  W  ++R  FF+ALD +NK F+ IK+LFP +T+ +L+  YYL K+N   L +M++
Sbjct:   85 EEQALALLTWHKADFHRAKSDLPNFSPLKYEWTPSERRVFFVALDYYNKQFHKIKKLFPTRTVNELILFYYLNKRNQQTLYEMSL 169

HSP 2 Score: 48.521 bits (114), Expect = 1.487e-18
Identity = 29/61 (47.54%), Postives = 34/61 (55.74%), Query Frame = 1

Query:   19 SVMLTRNRLTSHSLSEIDQGSFKNAVISVGKDFQAKLPQLEKLSSINYYKCLKRKYEVMLW 201
            S MLTR RL S S S  DQ +F+NAVI VG DFQ  LP  +   ++N      R   V LW
Sbjct:    2 SEMLTRGRL-SQSFSNSDQDAFENAVIRVGIDFQVDLPPFQGEPTLNIQNEPDRG--VALW 59

[Close]

BLAST of SMED30006146 vs. TrEMBL
Match: A0A504Z712 (REST corepressor 3 OS=Fasciola gigantica OX=46835 GN=FGIG_10497 PE=4 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.562e-18
Identity = 35/85 (41.18%), Postives = 54/85 (63.53%), Query Frame = 2

Query:  254 QEFTTRLIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVTVLRDMNV 508
            +E    L+ WHK D    ++DL N+ P K  W  ++R  FF+ALD +NK F+ IK+LFP +T+ +L+  YYL K+N   L +M++
Sbjct:   85 EEQALALLTWHKADFHRAKSDLPNFSPLKYEWTPSERRVFFVALDYYNKQFHKIKKLFPTRTVNELILFYYLNKRNQQTLYEMSL 169

HSP 2 Score: 48.521 bits (114), Expect = 1.562e-18
Identity = 29/61 (47.54%), Postives = 34/61 (55.74%), Query Frame = 1

Query:   19 SVMLTRNRLTSHSLSEIDQGSFKNAVISVGKDFQAKLPQLEKLSSINYYKCLKRKYEVMLW 201
            S MLTR RL S S S  DQ +F+NAVI VG DFQ  LP  +   ++N      R   V LW
Sbjct:    2 SEMLTRGRL-SQSFSNSDQDAFENAVIRVGIDFQVDLPPFQGEPTLNIQNEPDRG--VALW 59

[Close]

BLAST of SMED30006146 vs. TrEMBL
Match: A0A0X3PK00 (ELM2 domain-containing protein OS=Schistocephalus solidus OX=70667 GN=TR119906 PE=4 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.405e-14
Identity = 33/85 (38.82%), Postives = 48/85 (56.47%), Query Frame = 2

Query:  254 QEFTTRLIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVTVLRDMNV 508
            +E    L+ WHK DL     D  N+ P+K  W   +R  FF ALD + K F+ +K+LFP +T  +LV  YYL K+N   L ++ +
Sbjct:  128 EEQALALLTWHKFDLQRAAADFHNFSPRKYDWTHKERRIFFAALDFYCKQFHKVKKLFPKRTTCELVLFYYLNKRNQQTLYELTL 212

HSP 2 Score: 45.0542 bits (105), Expect = 1.405e-14
Identity = 23/60 (38.33%), Postives = 35/60 (58.33%), Query Frame = 1

Query:   22 VMLTRNRLTSHSLSEIDQGSFKNAVISVGKDFQAKLPQLEKLSSINYYKCLKRKYEVMLW 201
             MLTR RLT   +++ DQ +F+NA I +G D+QA LP  +      + +   R  E++LW
Sbjct:   46 AMLTRGRLT-EVVTDSDQNAFENAFIRIGPDYQAFLPVADPKYPEQFVQAADR--EILLW 102

[Close]

BLAST of SMED30006146 vs. TrEMBL
Match: A0A0X3P8S3 (ELM2 domain-containing protein (Fragment) OS=Schistocephalus solidus OX=70667 GN=TR119906 PE=4 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.464e-14
Identity = 33/85 (38.82%), Postives = 48/85 (56.47%), Query Frame = 2

Query:  254 QEFTTRLIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVTVLRDMNV 508
            +E    L+ WHK DL     D  N+ P+K  W   +R  FF ALD + K F+ +K+LFP +T  +LV  YYL K+N   L ++ +
Sbjct:  110 EEQALALLTWHKFDLQRAAADFHNFSPRKYDWTHKERRIFFAALDFYCKQFHKVKKLFPKRTTCELVLFYYLNKRNQQTLYELTL 194

HSP 2 Score: 45.0542 bits (105), Expect = 1.464e-14
Identity = 23/60 (38.33%), Postives = 35/60 (58.33%), Query Frame = 1

Query:   22 VMLTRNRLTSHSLSEIDQGSFKNAVISVGKDFQAKLPQLEKLSSINYYKCLKRKYEVMLW 201
             MLTR RLT   +++ DQ +F+NA I +G D+QA LP  +      + +   R  E++LW
Sbjct:   28 AMLTRGRLTE-VVTDSDQNAFENAFIRIGPDYQAFLPVADPKYPEQFVQAADR--EILLW 84

[Close]

BLAST of SMED30006146 vs. TrEMBL
Match: A0A0X3PR84 (REST corepressor 2 OS=Schistocephalus solidus OX=70667 GN=RCOR2 PE=4 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.540e-14
Identity = 33/85 (38.82%), Postives = 48/85 (56.47%), Query Frame = 2

Query:  254 QEFTTRLIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVTVLRDMNV 508
            +E    L+ WHK DL     D  N+ P+K  W   +R  FF ALD + K F+ +K+LFP +T  +LV  YYL K+N   L ++ +
Sbjct:   82 EEQALALLTWHKFDLQRAAADFHNFSPRKYDWTHKERRIFFAALDFYCKQFHKVKKLFPKRTTCELVLFYYLNKRNQQTLYELTL 166

HSP 2 Score: 45.0542 bits (105), Expect = 1.540e-14
Identity = 23/59 (38.98%), Postives = 35/59 (59.32%), Query Frame = 1

Query:   25 MLTRNRLTSHSLSEIDQGSFKNAVISVGKDFQAKLPQLEKLSSINYYKCLKRKYEVMLW 201
            MLTR RLT   +++ DQ +F+NA I +G D+QA LP  +      + +   R  E++LW
Sbjct:    1 MLTRGRLT-EVVTDSDQNAFENAFIRIGPDYQAFLPVADPKYPEQFVQAADR--EILLW 56

[Close]

BLAST of SMED30006146 vs. Ensembl Cavefish
Match: rcor2 (REST corepressor 2 [Source:NCBI gene;Acc:103025587])

HSP 1 Score: 58.151 bits (139), Expect = 9.063e-9
Identity = 27/72 (37.50%), Postives = 40/72 (55.56%), Query Frame = 2

Query:  272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVT 487
            ++ WHK D++    DL N+ P  D W   D+  F  A   H K+F+ I+++ P+K I  LV  YY +KK  T
Sbjct:  108 MLLWHKHDVERSLADLANFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKLISSLVKYYYSWKKTRT 179

[Close]

BLAST of SMED30006146 vs. Ensembl Cavefish
Match: ENSAMXT00000004792.2 (pep primary_assembly:Astyanax_mexicanus-2.0:5:139106:154149:-1 gene:ENSAMXG00000004677.2 transcript:ENSAMXT00000004792.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 55.0694 bits (131), Expect = 6.675e-8
Identity = 25/69 (36.23%), Postives = 40/69 (57.97%), Query Frame = 2

Query:  272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478
            ++ WHK +++    DL N+ P  D W   D+  F  A   H K+F+ I+++ P+K+I  LV  YY +KK
Sbjct:  111 MLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKSISSLVKYYYSWKK 179

[Close]

BLAST of SMED30006146 vs. Ensembl Cavefish
Match: rcor1 (REST corepressor 1 [Source:ZFIN;Acc:ZDB-GENE-050506-79])

HSP 1 Score: 53.5286 bits (127), Expect = 2.033e-7
Identity = 24/69 (34.78%), Postives = 38/69 (55.07%), Query Frame = 2

Query:  272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478
            ++ WHK +++    DL N+ P  D W   D+  F      H K F+ I+++ P+K+I  LV  YY +KK
Sbjct:  118 MLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQGFSFHGKTFHRIQQMLPDKSIASLVRFYYSWKK 186

[Close]

BLAST of SMED30006146 vs. Ensembl Sea Lamprey
Match: rcor1 (REST corepressor 1 [Source:ZFIN;Acc:ZDB-GENE-050506-79])

HSP 1 Score: 62.3882 bits (150), Expect = 5.581e-11
Identity = 27/78 (34.62%), Postives = 44/78 (56.41%), Query Frame = 2

Query:  272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVTVLRDMN 505
            L+ WH  +++    D+ N+ P  D W   +RA F  A   H K+F++I+++ P K+IG LV  YY +K+  T    M+
Sbjct:  166 LLLWHAHNIERSLADMPNFAPDADEWGETERALFEQAYGFHGKSFHLIQQMLPGKSIGSLVRHYYTWKQTRTRTSVMD 243

[Close]

BLAST of SMED30006146 vs. Ensembl Sea Lamprey
Match: rcor1 (REST corepressor 1 [Source:ZFIN;Acc:ZDB-GENE-050506-79])

HSP 1 Score: 59.6918 bits (143), Expect = 7.201e-11
Identity = 27/72 (37.50%), Postives = 42/72 (58.33%), Query Frame = 2

Query:  272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVT 487
            ++ WHK +++    DL N+ P  D W   D+  F  A   H K+F+ I+++ P+K+IG LV  YY +KK  T
Sbjct:   49 MLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKSIGSLVRYYYAWKKTRT 120

[Close]

BLAST of SMED30006146 vs. Ensembl Sea Lamprey
Match: rcor1 (REST corepressor 1 [Source:ZFIN;Acc:ZDB-GENE-050506-79])

HSP 1 Score: 62.003 bits (149), Expect = 7.304e-11
Identity = 26/72 (36.11%), Postives = 42/72 (58.33%), Query Frame = 2

Query:  272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVT 487
            L+ WH  +++    D+ N+ P  D W   +RA F  A   H K+F++I+++ P K+IG LV  YY +K+  T
Sbjct:  137 LLLWHAHNIERSLADMPNFAPDADEWGETERALFEQAYGFHGKSFHLIQQMLPGKSIGSLVRHYYTWKQTRT 208

[Close]

BLAST of SMED30006146 vs. Ensembl Nematostella
Match: EDO33362 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SSF7])

HSP 1 Score: 58.151 bits (139), Expect = 1.880e-9
Identity = 25/70 (35.71%), Postives = 41/70 (58.57%), Query Frame = 2

Query:  272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKN 481
            ++ WHK +++    DL N+ P  D W+  D+  F  A  SH K+F  I+++ P+K++  LV  YY +KK 
Sbjct:   70 MLFWHKHNIEKSLTDLANFTPFPDEWSLEDKVLFEQAFGSHGKSFRRIQQMLPDKSVSSLVKYYYSWKKT 139

[Close]

BLAST of SMED30006146 vs. Ensembl Medaka
Match: rcor2 (REST corepressor 2 [Source:NCBI gene;Acc:101173414])

HSP 1 Score: 60.077 bits (144), Expect = 2.341e-9
Identity = 30/82 (36.59%), Postives = 44/82 (53.66%), Query Frame = 2

Query:  242 LFLMQEFTTRLIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVT 487
            L L + F   ++ WHK D++    DL N+ P  D W   D+  F  A   H K+F+ I+++ P+K I  LV  YY +KK  T
Sbjct:   92 LPLCKTFWNCMLLWHKHDVERSLADLANFTPFPDEWTIEDKVLFEQAFSFHGKSFHRIQQMLPDKLISSLVKYYYSWKKTRT 173

[Close]

BLAST of SMED30006146 vs. Ensembl Medaka
Match: rcor2 (REST corepressor 2 [Source:NCBI gene;Acc:101173414])

HSP 1 Score: 58.151 bits (139), Expect = 8.914e-9
Identity = 27/72 (37.50%), Postives = 40/72 (55.56%), Query Frame = 2

Query:  272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVT 487
            ++ WHK D++    DL N+ P  D W   D+  F  A   H K+F+ I+++ P+K I  LV  YY +KK  T
Sbjct:  109 MLLWHKHDVERSLADLANFTPFPDEWTIEDKVLFEQAFSFHGKSFHRIQQMLPDKLISSLVKYYYSWKKTRT 180

[Close]

BLAST of SMED30006146 vs. Ensembl Medaka
Match: rcor1 (REST corepressor 1 [Source:NCBI gene;Acc:101161362])

HSP 1 Score: 56.225 bits (134), Expect = 3.336e-8
Identity = 25/70 (35.71%), Postives = 41/70 (58.57%), Query Frame = 2

Query:  272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKN 481
            ++ WHK +++    DL N+ P  D W   DR  F  A   H K+F+ I+++ P+K++  LV  YY +KK+
Sbjct:  113 MLFWHKHNIEKSLADLPNFTPFPDEWTVEDRVLFEQAFSFHGKSFHRIQQMLPDKSMASLVRFYYSWKKS 182

[Close]

BLAST of SMED30006146 vs. Ensembl Medaka
Match: rcor3 (REST corepressor 3 [Source:NCBI gene;Acc:101170567])

HSP 1 Score: 55.0694 bits (131), Expect = 8.689e-8
Identity = 25/66 (37.88%), Postives = 38/66 (57.58%), Query Frame = 2

Query:  281 WHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478
            WHK +++    DL N+ P  D W   D+  F  A   H K+F+ I+++ P+K+I  LV  YY +KK
Sbjct:  164 WHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKSISSLVKYYYSWKK 229

[Close]

BLAST of SMED30006146 vs. Ensembl Medaka
Match: rcor3 (REST corepressor 3 [Source:NCBI gene;Acc:101170567])

HSP 1 Score: 54.6842 bits (130), Expect = 9.886e-8
Identity = 25/69 (36.23%), Postives = 40/69 (57.97%), Query Frame = 2

Query:  272 LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKK 478
            ++ WHK +++    DL N+ P  D W   D+  F  A   H K+F+ I+++ P+K+I  LV  YY +KK
Sbjct:  161 MLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKSISSLVKYYYSWKK 229

[Close]

BLAST of SMED30006146 vs. Planmine SMEST
Match: SMESG000032810.1 (SMESG000032810.1)

HSP 1 Score: 739.954 bits (1909), Expect = 0.000e+0
Identity = 356/357 (99.72%), Postives = 357/357 (100.00%), Query Frame = 2

Query:  185 MKLCCGVRVLYDHKINYKKLFLMQEFTTRLIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVTVLRDMNVLLFPGAPLGSSVLHKIKRYENAMPKHFVSKFGAIIKNLPLSNNLNADLTNQTLWGDHALAESVKSVMRQIEINQNLHCGNRFTEQTRDILFDQGKYVSKKMPKRQHHCINEHKQWLRDFYHSYNHQELIQYLHSGDDNKHDILNQEIKDSSNLIKTIESEIMNKSKQLIDLFKHYKQQYPQFNAKWTESDIQLAQLAIKEAGGDIKFVASALGDKTVNMVKHFISLYSQRLQIDEGIWQNLLSNSANKA 1255
            MKLCCGVRVLYDHKINYKKLFLMQEFTTRLIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVTVLRDMNVLLFPGAPLGSSVLHKIKRYENAMPKHFVSKFGAIIKNLPLSNNLNADLTNQTLWGDHALAESVKSVMRQIEINQNLHCGNRFTEQTRDILFDQGKYVSKKMPKRQHHCINEHKQWLRDFYHSYNHQELIQYLHSGDDNKHD+LNQEIKDSSNLIKTIESEIMNKSKQLIDLFKHYKQQYPQFNAKWTESDIQLAQLAIKEAGGDIKFVASALGDKTVNMVKHFISLYSQRLQIDEGIWQNLLSNSANKA
Sbjct:    1 MKLCCGVRVLYDHKINYKKLFLMQEFTTRLIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVTVLRDMNVLLFPGAPLGSSVLHKIKRYENAMPKHFVSKFGAIIKNLPLSNNLNADLTNQTLWGDHALAESVKSVMRQIEINQNLHCGNRFTEQTRDILFDQGKYVSKKMPKRQHHCINEHKQWLRDFYHSYNHQELIQYLHSGDDNKHDVLNQEIKDSSNLIKTIESEIMNKSKQLIDLFKHYKQQYPQFNAKWTESDIQLAQLAIKEAGGDIKFVASALGDKTVNMVKHFISLYSQRLQIDEGIWQNLLSNSANKA 357

[Close]

BLAST of SMED30006146 vs. Planmine SMEST
Match: SMESG000032810.1 (SMESG000032810.1)

HSP 1 Score: 733.406 bits (1892), Expect = 0.000e+0
Identity = 355/362 (98.07%), Postives = 357/362 (98.62%), Query Frame = 2

Query:  185 MKLCCGVRVLYDHKINYKKLFLMQEFTTR-----LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVTVLRDMNVLLFPGAPLGSSVLHKIKRYENAMPKHFVSKFGAIIKNLPLSNNLNADLTNQTLWGDHALAESVKSVMRQIEINQNLHCGNRFTEQTRDILFDQGKYVSKKMPKRQHHCINEHKQWLRDFYHSYNHQELIQYLHSGDDNKHDILNQEIKDSSNLIKTIESEIMNKSKQLIDLFKHYKQQYPQFNAKWTESDIQLAQLAIKEAGGDIKFVASALGDKTVNMVKHFISLYSQRLQIDEGIWQNLLSNSANKA 1255
            MKLCCGVRVLYDHKINYKKLFLMQEFTT+     LIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVTVLRDMNVLLFPGAPLGSSVLHKIKRYENAMPKHFVSKFGAIIKNLPLSNNLNADLTNQTLWGDHALAESVKSVMRQIEINQNLHCGNRFTEQTRDILFDQGKYVSKKMPKRQHHCINEHKQWLRDFYHSYNHQELIQYLHSGDDNKHD+LNQEIKDSSNLIKTIESEIMNKSKQLIDLFKHYKQQYPQFNAKWTESDIQLAQLAIKEAGGDIKFVASALGDKTVNMVKHFISLYSQRLQIDEGIWQNLLSNSANKA
Sbjct:    1 MKLCCGVRVLYDHKINYKKLFLMQEFTTKEMTLGLIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVTVLRDMNVLLFPGAPLGSSVLHKIKRYENAMPKHFVSKFGAIIKNLPLSNNLNADLTNQTLWGDHALAESVKSVMRQIEINQNLHCGNRFTEQTRDILFDQGKYVSKKMPKRQHHCINEHKQWLRDFYHSYNHQELIQYLHSGDDNKHDVLNQEIKDSSNLIKTIESEIMNKSKQLIDLFKHYKQQYPQFNAKWTESDIQLAQLAIKEAGGDIKFVASALGDKTVNMVKHFISLYSQRLQIDEGIWQNLLSNSANKA 362

[Close]

BLAST of SMED30006146 vs. Planmine SMEST
Match: SMESG000032810.1 (SMESG000032810.1)

HSP 1 Score: 694.501 bits (1791), Expect = 0.000e+0
Identity = 334/335 (99.70%), Postives = 335/335 (100.00%), Query Frame = 2

Query:  251 MQEFTTRLIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVTVLRDMNVLLFPGAPLGSSVLHKIKRYENAMPKHFVSKFGAIIKNLPLSNNLNADLTNQTLWGDHALAESVKSVMRQIEINQNLHCGNRFTEQTRDILFDQGKYVSKKMPKRQHHCINEHKQWLRDFYHSYNHQELIQYLHSGDDNKHDILNQEIKDSSNLIKTIESEIMNKSKQLIDLFKHYKQQYPQFNAKWTESDIQLAQLAIKEAGGDIKFVASALGDKTVNMVKHFISLYSQRLQIDEGIWQNLLSNSANKA 1255
            MQEFTTRLIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVTVLRDMNVLLFPGAPLGSSVLHKIKRYENAMPKHFVSKFGAIIKNLPLSNNLNADLTNQTLWGDHALAESVKSVMRQIEINQNLHCGNRFTEQTRDILFDQGKYVSKKMPKRQHHCINEHKQWLRDFYHSYNHQELIQYLHSGDDNKHD+LNQEIKDSSNLIKTIESEIMNKSKQLIDLFKHYKQQYPQFNAKWTESDIQLAQLAIKEAGGDIKFVASALGDKTVNMVKHFISLYSQRLQIDEGIWQNLLSNSANKA
Sbjct:    1 MQEFTTRLIKWHKGDLDAVQNDLMNYVPKKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNVTVLRDMNVLLFPGAPLGSSVLHKIKRYENAMPKHFVSKFGAIIKNLPLSNNLNADLTNQTLWGDHALAESVKSVMRQIEINQNLHCGNRFTEQTRDILFDQGKYVSKKMPKRQHHCINEHKQWLRDFYHSYNHQELIQYLHSGDDNKHDVLNQEIKDSSNLIKTIESEIMNKSKQLIDLFKHYKQQYPQFNAKWTESDIQLAQLAIKEAGGDIKFVASALGDKTVNMVKHFISLYSQRLQIDEGIWQNLLSNSANKA 335

The following BLAST results are available for this feature:

BLAST of SMED30006146 vs. Ensembl Human
BLAST of SMED30006146 vs. Ensembl Celegans
BLAST of SMED30006146 vs. Ensembl Fly
BLAST of SMED30006146 vs. Ensembl Zebrafish
BLAST of SMED30006146 vs. Ensembl Xenopus
BLAST of SMED30006146 vs. Ensembl Mouse
BLAST of SMED30006146 vs. UniProt/SwissProt
BLAST of SMED30006146 vs. TrEMBL
BLAST of SMED30006146 vs. Ensembl Cavefish
BLAST of SMED30006146 vs. Ensembl Sea Lamprey
BLAST of SMED30006146 vs. Ensembl Yeast
BLAST of SMED30006146 vs. Ensembl Nematostella
BLAST of SMED30006146 vs. Ensembl Medaka
BLAST of SMED30006146 vs. Planmine SMEST

BLAST of SMED30006146 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
RCOR3	3.847e-9	37.14	REST corepressor 3 [Source:HGNC Symbol;Acc:HGNC:25...	[more]
RCOR3	2.315e-8	37.14	REST corepressor 3 [Source:HGNC Symbol;Acc:HGNC:25...	[more]
RCOR3	2.911e-8	39.39	REST corepressor 3 [Source:HGNC Symbol;Acc:HGNC:25...	[more]
RCOR3	3.334e-8	37.68	REST corepressor 3 [Source:HGNC Symbol;Acc:HGNC:25...	[more]
RCOR3	3.448e-8	39.39	REST corepressor 3 [Source:HGNC Symbol;Acc:HGNC:25...	[more]

BLAST of SMED30006146 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30006146 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
CoRest	2.637e-9	40.91	gene:FBgn0261573 transcript:FBtr0336667	[more]
CoRest	2.831e-9	40.91	gene:FBgn0261573 transcript:FBtr0302861	[more]
CoRest	2.831e-9	40.91	gene:FBgn0261573 transcript:FBtr0302860	[more]
CoRest	2.831e-9	40.91	gene:FBgn0261573 transcript:FBtr0302859	[more]
CoRest	9.356e-9	40.91	gene:FBgn0261573 transcript:FBtr0302864	[more]

BLAST of SMED30006146 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rcor2	1.401e-9	37.50	REST corepressor 2 [Source:NCBI gene;Acc:402934]	[more]
rcor2	1.734e-9	37.50	REST corepressor 2 [Source:NCBI gene;Acc:402934]	[more]
rcor2	1.857e-9	37.50	REST corepressor 2 [Source:NCBI gene;Acc:402934]	[more]
rcor3	2.782e-9	37.88	REST corepressor 3 [Source:ZFIN;Acc:ZDB-GENE-05020...	[more]
rcor2	1.713e-8	37.50	REST corepressor 2 [Source:NCBI gene;Acc:402934]	[more]

BLAST of SMED30006146 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rcor2	1.238e-11	35.71	REST corepressor 2 [Source:NCBI gene;Acc:100038078...	[more]
RCOR3	5.981e-8	37.31	REST corepressor 3 [Source:NCBI gene;Acc:779496]	[more]
RCOR3	7.137e-8	37.31	REST corepressor 3 [Source:NCBI gene;Acc:779496]	[more]
RCOR3	7.648e-8	35.71	REST corepressor 3 [Source:NCBI gene;Acc:779496]	[more]
RCOR3	8.238e-8	37.31	REST corepressor 3 [Source:NCBI gene;Acc:779496]	[more]

BLAST of SMED30006146 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Rcor3	2.015e-8	37.68	REST corepressor 3 [Source:MGI Symbol;Acc:MGI:2441...	[more]
Rcor3	2.015e-8	37.68	REST corepressor 3 [Source:MGI Symbol;Acc:MGI:2441...	[more]
Rcor3	2.301e-8	39.39	REST corepressor 3 [Source:MGI Symbol;Acc:MGI:2441...	[more]
Rcor3	2.301e-8	39.39	REST corepressor 3 [Source:MGI Symbol;Acc:MGI:2441...	[more]
Rcor3	2.329e-8	37.14	REST corepressor 3 [Source:MGI Symbol;Acc:MGI:2441...	[more]

BLAST of SMED30006146 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q6NRZ0\|RCOR2_XENLA	9.833e-11	35.71	REST corepressor 2 OS=Xenopus laevis OX=8355 GN=rc...	[more]
sp\|Q59E36\|RCOR_DROME	9.379e-8	40.91	REST corepressor OS=Drosophila melanogaster OX=722...	[more]
sp\|Q90WN5\|RCOR1_XENLA	9.407e-8	39.39	REST corepressor 1 OS=Xenopus laevis OX=8355 GN=rc...	[more]
sp\|Q6P116\|RCOR2_DANRE	1.293e-7	37.50	REST corepressor 2 OS=Danio rerio OX=7955 GN=rcor2...	[more]
sp\|Q5ZJ40\|RCOR3_CHICK	1.623e-7	37.68	REST corepressor 3 OS=Gallus gallus OX=9031 GN=RCO...	[more]

BLAST of SMED30006146 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A4E0RZY1	1.487e-18	41.18	REST corepressor 3 OS=Fasciola hepatica OX=6192 GN...	[more]
A0A504Z712	1.562e-18	41.18	REST corepressor 3 OS=Fasciola gigantica OX=46835 ...	[more]
A0A0X3PK00	1.405e-14	38.82	ELM2 domain-containing protein OS=Schistocephalus ...	[more]
A0A0X3P8S3	1.464e-14	38.82	ELM2 domain-containing protein (Fragment) OS=Schis...	[more]
A0A0X3PR84	1.540e-14	38.82	REST corepressor 2 OS=Schistocephalus solidus OX=7...	[more]

BLAST of SMED30006146 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 3


Match Name	E-value	Identity	Description
rcor2	9.063e-9	37.50	REST corepressor 2 [Source:NCBI gene;Acc:103025587...	[more]
ENSAMXT00000004792.2	6.675e-8	36.23	pep primary_assembly:Astyanax_mexicanus-2.0:5:1391...	[more]
rcor1	2.033e-7	34.78	REST corepressor 1 [Source:ZFIN;Acc:ZDB-GENE-05050...	[more]

BLAST of SMED30006146 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 3


Match Name	E-value	Identity	Description
rcor1	5.581e-11	34.62	REST corepressor 1 [Source:ZFIN;Acc:ZDB-GENE-05050...	[more]
rcor1	7.201e-11	37.50	REST corepressor 1 [Source:ZFIN;Acc:ZDB-GENE-05050...	[more]
rcor1	7.304e-11	36.11	REST corepressor 1 [Source:ZFIN;Acc:ZDB-GENE-05050...	[more]

BLAST of SMED30006146 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30006146 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1


Match Name	E-value	Identity	Description
EDO33362	1.880e-9	35.71	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of SMED30006146 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rcor2	2.341e-9	36.59	REST corepressor 2 [Source:NCBI gene;Acc:101173414...	[more]
rcor2	8.914e-9	37.50	REST corepressor 2 [Source:NCBI gene;Acc:101173414...	[more]
rcor1	3.336e-8	35.71	REST corepressor 1 [Source:NCBI gene;Acc:101161362...	[more]
rcor3	8.689e-8	37.88	REST corepressor 3 [Source:NCBI gene;Acc:101170567...	[more]
rcor3	9.886e-8	36.23	REST corepressor 3 [Source:NCBI gene;Acc:101170567...	[more]

BLAST of SMED30006146 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3


Match Name	E-value	Identity	Description
SMESG000032810.1	0.000e+0	99.72	SMESG000032810.1	[more]
SMESG000032810.1	0.000e+0	98.07	SMESG000032810.1	[more]
SMESG000032810.1	0.000e+0	99.70	SMESG000032810.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence
protein sequence

transcript sequence

>SMED30006146 ID=SMED30006146|Name=SMED30006146|organism=Schmidtea mediterranea sexual|type=transcript|length=1273bp
CTAAAATTTAATGAACAAAGTGTAATGTTGACCAGAAATAGATTAACTTC
ACATTCTTTATCTGAAATTGATCAGGGTTCATTTAAAAATGCTGTAATAA
GTGTTGGAAAGGATTTTCAAGCTAAGTTACCTCAATTAGAAAAATTATCT
TCTATAAATTACTATAAATGTTTAAAAAGAAAATATGAAGTTATGTTGTG
GAGTACGAGTTTTGTACGATCACAAGATAAATTACAAGAAACTATTTCTA
ATGCAAGAATTCACTACAAGGCTTATAAAGTGGCACAAAGGAGATTTAGA
TGCAGTTCAAAATGATTTAATGAACTATGTCCCCAAAAAAGATTTTTGGA
ATACCAATGACAGGGCTAAGTTTTTTATGGCGTTAGATTCACATAATAAA
AATTTCAATATTATTAAGGAACTTTTTCCAAATAAAACGATCGGTCAGCT
TGTTTCTGCTTATTATTTATTCAAGAAAAATGTTACAGTTCTTAGAGATA
TGAATGTACTTTTGTTTCCTGGAGCACCACTAGGAAGTTCTGTTTTGCAT
AAAATCAAAAGATATGAAAATGCAATGCCTAAGCACTTTGTTTCAAAGTT
TGGAGCGATTATTAAAAATCTACCACTATCAAATAATTTGAATGCAGATT
TGACGAATCAGACACTGTGGGGTGATCATGCATTGGCTGAGTCAGTTAAA
AGTGTCATGCGTCAAATAGAAATAAACCAAAATCTTCATTGTGGAAATAG
ATTTACGGAACAAACTAGAGATATTTTGTTCGATCAAGGGAAATATGTTT
CCAAAAAAATGCCCAAGCGTCAACATCATTGTATTAATGAACATAAGCAA
TGGTTACGAGACTTTTATCATTCATACAACCATCAAGAGCTTATTCAATA
CCTTCATTCTGGAGATGACAATAAACATGATATTCTTAATCAAGAAATTA
AAGATAGCAGCAACTTAATTAAAACAATAGAATCAGAAATTATGAATAAA
TCAAAACAACTAATAGACTTATTCAAGCATTACAAGCAACAATATCCTCA
GTTCAATGCCAAATGGACTGAGAGCGACATTCAATTGGCACAGTTAGCAA
TTAAAGAAGCCGGGGGAGATATAAAATTTGTTGCGTCGGCGCTGGGTGAT
AAAACTGTAAATATGGTGAAGCATTTTATATCACTCTATTCGCAGCGTTT
ACAAATTGATGAAGGAATATGGCAAAATTTGTTATCTAATTCTGCAAATA
AAGCTTAGTGAATTTTTTTTTGT

protein sequence of SMED30006146-orf-1

>SMED30006146-orf-1 ID=SMED30006146-orf-1|Name=SMED30006146-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=105bp
LKFNEQSVMLTRNRLTSHSLSEIDQGSFKNAVISVGKDFQAKLPQLEKLS
SINYYKCLKRKYEVMLWSTSFVRSQDKLQETISNARIHYKAYKVAQRRFR
CSSK*

protein sequence of SMED30006146-orf-2

>SMED30006146-orf-2 ID=SMED30006146-orf-2|Name=SMED30006146-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=358bp
MKLCCGVRVLYDHKINYKKLFLMQEFTTRLIKWHKGDLDAVQNDLMNYVP
KKDFWNTNDRAKFFMALDSHNKNFNIIKELFPNKTIGQLVSAYYLFKKNV
TVLRDMNVLLFPGAPLGSSVLHKIKRYENAMPKHFVSKFGAIIKNLPLSN
NLNADLTNQTLWGDHALAESVKSVMRQIEINQNLHCGNRFTEQTRDILFD
QGKYVSKKMPKRQHHCINEHKQWLRDFYHSYNHQELIQYLHSGDDNKHDI
LNQEIKDSSNLIKTIESEIMNKSKQLIDLFKHYKQQYPQFNAKWTESDIQ
LAQLAIKEAGGDIKFVASALGDKTVNMVKHFISLYSQRLQIDEGIWQNLL
SNSANKA*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0002109	X1 cell

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR009057	Homeobox-like_sf

Vocabulary: **molecular function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **cellular component**
Term	Definition
GO:0005634	nucleus

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 248..268
None	No IPR available	GENE3D	G3DSA:1.20.58.1880		coord: 224..348 e-value: 2.6E-11 score: 45.8
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 53..100 e-value: 9.8E-10 score: 40.5
None	No IPR available	PANTHER	PTHR16089	REST COREPRESSOR COREST PROTEIN-RELATED	coord: 30..340
None	No IPR available	PANTHER	PTHR16089:SF28	GEO13032P1-RELATED	coord: 30..340
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 51..99 e-value: 1.9 score: 15.8 coord: 290..338 e-value: 1.6 score: 16.7
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 44..99

Main menu

SMED30006146

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 2

Owlery

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