Calcium activated potassium channel subunit
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30006112 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 5
Homology
BLAST of Calcium activated potassium channel subunit vs. Ensembl Xenopus
Match: dnajc1 (DnaJ heat shock protein family (Hsp40) member C1 [Source:Xenbase;Acc:XB-GENE-950431]) HSP 1 Score: 51.2174 bits (121), Expect = 6.627e-7 Identity = 52/192 (27.08%), Postives = 82/192 (42.71%), Query Frame = 2 Query: 593 FLTSGFILECILLHLMLTPYLAEQEFEQTTCVYRNSSSRFILLSDLQLRCENKCTKDTGKFPCVWLLVNYVIPNSGQRQLQDGXXXXXXXXXXXXKKQRCS-TSPCHLLLSDNIDWVISFDRTLYSK---HNFSCYYNT-KDHMSVLLYKLYPKSLILHCILWPFGIFIVGLVGITFTALIAGCDVWKNEDV 1153 + SG I IL L P L E + + C S + + C ++C K T +PC+ + VN NS QD +CS PC N + V+S+ ++ F+CY+N + VLL + + +S++LHC LWP F+VG++ + T + A C K E + Sbjct: 24 LIISGVISLFILGFCWLHPALLEMQGKTANCTVL-SVQQIGETFECTFSCGSEC-KGTSLYPCLQIYVNNSESNSRALLHQD--------ERQLISNPKCSYIPPCERENQKNSENVLSWQEYWNNEIGFQTFTCYFNKHRRPEDVLLRRTHDESVLLHCFLWPLVTFMVGVLIVVLT-ICAKCLAVKAEAI 204
BLAST of Calcium activated potassium channel subunit vs. Ensembl Mouse
Match: Kcnmb3 (potassium large conductance calcium-activated channel, subfamily M, beta member 3 [Source:MGI Symbol;Acc:MGI:3612244]) HSP 1 Score: 51.2174 bits (121), Expect = 8.247e-7 Identity = 50/185 (27.03%), Postives = 84/185 (45.41%), Query Frame = 2 Query: 578 LSSMTFLTSGFILECILLHLMLTPYLAEQEFEQTTCVYRNSSSRFILLSDLQLRCENKCTKDTGKFPCVWLLVNYVIPNSGQRQLQDGXXXXXXXXXXXXKKQRCSTSP-CHLLLSDNIDWVISFDRTLYSKHN---FSCYYNTKDHMSVLLYKLYPKSLILHCILWPF-----GIFIVGLVGIT 1105 L + + S ++ +L +L P++ E++ C ++ L D CE C +D G+ PC+ + VN + +SGQ+ L +Y +C +P CH D ++ V+ D + HN F C+Y+ + V+L K K ++ HC+ WP G IVGLV +T Sbjct: 52 LLGVAMMASSVLMFFLLGTTVLKPFMLRSPREESNCTTVHTHIVDDGL-DFSFTCEGSC-QDHGRSPCLQVFVN--LSHSGQKVL------LHYDDEAIRTNPKCFYTPKCHGDRDDLLNSVL--DIKEFFDHNNGTFPCFYSPDGPLGVVLRKSGHK-VVFHCLFWPLLTLLGGALIVGLVRLT 223
BLAST of Calcium activated potassium channel subunit vs. UniProt/SwissProt
Match: sp|A7VL23|KCMB3_RAT (Calcium-activated potassium channel subunit beta-3 OS=Rattus norvegicus OX=10116 GN=Kcnmb3 PE=2 SV=1) HSP 1 Score: 50.8322 bits (120), Expect = 6.809e-6 Identity = 47/183 (25.68%), Postives = 82/183 (44.81%), Query Frame = 2 Query: 578 LSSMTFLTSGFILECILLHLMLTPYLAEQEFEQTTC--VYRNSSSRFILLSDLQLRCENKCTKDTGKFPCVWLLVNYVIPNSGQRQLQDGXXXXXXXXXXXXKKQRCSTSPCHLLLSDNIDWVISFDRTLYSKHNFSCYYNTKDHMSVLLYKLYPKSLILHCILWPF-----GIFIVGLVGIT 1105 L + + S ++ +L +L P++ E++ C V+ + + ++ D CE C + G +PC+ + VN + +SGQ+ L + +C HLL S +D FD ++ F C+Y+ + V+L K K ++ HC+ WP G IVGLV +T Sbjct: 52 LLGIAMMASSVLMFFLLGTTVLKPFMLSSPREESNCTTVHTHIADDWL---DFAFTCEGSC-QGQGTYPCLQVFVN--LSHSGQKVLLHYDEEAIRTNPKCFYTPKCHGDRDHLLNS-ALDIKEFFD---HNNGTFPCFYSPDGPLGVVLRKSGHK-VVFHCLFWPLLTLLGGALIVGLVRLT 223
BLAST of Calcium activated potassium channel subunit vs. TrEMBL
Match: A0A4Z2CW83 (Calcium-activated potassium channel subunit beta-2 OS=Schistosoma japonicum OX=6182 GN=EWB00_007000 PE=4 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 2.419e-30 Identity = 71/199 (35.68%), Postives = 114/199 (57.29%), Query Frame = 2 Query: 566 KLIYLSSMTFLTSGFILECILLHLMLTPYLAEQEFEQTTCVYRNSSSRFILLSDLQLRCENKCTKDTGKFPCVWLLVNYVIPNSGQRQLQDGXXXXXXXXXXXXKKQRCSTSPCHLLLSDNIDWVISFDRTLYSKHNFSCYYNTKDHMSVLLYKLYPKSLILHCILWPFGIFIVGLVGITFTALIAGCDVWK-NEDVVI 1159 K+IYL+ T +T+ FI+ECIL+HL++ PY E F T C + ++ +I+ +D+ +CENKC+KD KFPC+ ++V Y+ N + L+D TYN YK C+TS CH DN +WV F R + + +F CY + LLYK Y + + H + WP +F++ + + ++ C VW ++DV++ Sbjct: 23 KIIYLTCATVITTTFIVECILIHLVVQPYFHESAFTHTNCSFLHA---YIVRTDV--KCENKCSKDRSKFPCLKVIVQYLSGNKNHTVI----LFDNIATYNHYKLLGCATSACHHRDMDNTEWVEKFQRRIRLQRHFRCYVHATHEDEALLYKFYTFTSVFHAVFWPISLFLISSICLLLIYIMDKCRVWTGDQDVIV 212
BLAST of Calcium activated potassium channel subunit vs. TrEMBL
Match: A0A5K4F4V2 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 PE=4 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 1.644e-29 Identity = 71/199 (35.68%), Postives = 109/199 (54.77%), Query Frame = 2 Query: 566 KLIYLSSMTFLTSGFILECILLHLMLTPYLAEQEFEQTTCVYRNSSSRFILLSDLQLRCENKCTKDTGKFPCVWLLVNYVIPNSGQRQLQDGXXXXXXXXXXXXKKQRCSTSPCHLLLSDNIDWVISFDRTLYSKHNFSCYYNTKDHMSVLLYKLYPKSLILHCILWPFGIFIVGLVGITFTALIAGCDVWK-NEDVVI 1159 K+IYL+ T +T+ FI+ECIL+HL++ PY E F T C + ++ ++CENKC+KD KFPC+ ++V Y+ N + L+D TYN YK C+TS CH DN +WV F + + +H F CY +T LLYK Y + + H I WP +F++ + + + C VW ++DV++ Sbjct: 20 KIIYLTCATIMTTTFIIECILIHLVVQPYFHESAFTHTNCTFVHAH-----YVRKDVKCENKCSKDRSKFPCLKVIVQYLNGNKNHTVI----LFDNIATYNHYKFLGCATSACHHRDMDNTEWVEKFQQRIKHQHYFQCYIHTIHEDEALLYKFYTFTSVFHSIFWPIILFLLSFICLYIIYIFDKCHVWTGDQDVIV 209
BLAST of Calcium activated potassium channel subunit vs. TrEMBL
Match: G7YF65 (Calcium-activated potassium channel subunit beta-2 OS=Clonorchis sinensis OX=79923 GN=CLF_106446 PE=4 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 2.256e-29 Identity = 67/198 (33.84%), Postives = 109/198 (55.05%), Query Frame = 2 Query: 566 KLIYLSSMTFLTSGFILECILLHLMLTPYLAEQEFEQTTCVYRNSSSRFILLSDLQLRCENKCTKDTGKFPCVWLLVNYVIPNSGQRQLQDGXXXXXXXXXXXXKKQRCSTSPCHLLLSDNIDWVISFDRTLYSKHNFSCYYNTKDHMSVLLYKLYPKSLILHCILWPFGIFIVGLVGITFTALIAGCDVWKNEDVVI 1159 K++YL+ T +T+ FI+ECIL HL++ PYL E F T C Y ++ + + ++CEN+C+KD +FPC+ +LV Y + + L+D TY++YK C+TS CH +DN +V+ F+ + +++F CY ++ LL K Y + H I WP G+F + + F L+ C VW + +I Sbjct: 18 KVLYLTCATVITTTFIVECILAHLVVQPYLHESAFTLTNCSYVHAH-----IVNHAVKCENRCSKDRSRFPCLQVLVRYTSRGANHTVI----LFDNIATYHQYKAFGCATSSCHHRDADNTAYVLRFEHRIKHRNHFECYIHSVHENEALLTKFYSAKTLFHVIFWPVGLFFTSIACVLFAYLVDRCRVWTGDQSMI 206
BLAST of Calcium activated potassium channel subunit vs. TrEMBL
Match: A0A4S2KQU4 (Uncharacterized protein (Fragment) OS=Opisthorchis felineus OX=147828 GN=CRM22_010674 PE=4 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 2.403e-29 Identity = 68/203 (33.50%), Postives = 111/203 (54.68%), Query Frame = 2 Query: 551 ETGISKLIYLSSMTFLTSGFILECILLHLMLTPYLAEQEFEQTTCVYRNSSSRFILLSDLQLRCENKCTKDTGKFPCVWLLVNYVIPNSGQRQLQDGXXXXXXXXXXXXKKQRCSTSPCHLLLSDNIDWVISFDRTLYSKHNFSCYYNTKDHMSVLLYKLYPKSLILHCILWPFGIFIVGLVGITFTALIAGCDVWKNEDVVI 1159 G K++YL+ T +T+ FI+ECIL HL++ PYL E F T C Y ++ + + ++CEN+C+KD +FPC+ +LV Y + + L+D TY++YK C+TS CH +DN +V+ F+ + +++F CY ++ LL K Y + H I WP G+F+ + + F L+ C VW + +I Sbjct: 48 RVGCLKVLYLTCATVITTTFIVECILAHLVVQPYLHESAFTLTNCSYVHAH-----IVNHAVKCENRCSKDRSRFPCLQVLVRYTSRGANHTVI----LFDNIATYHQYKAYGCATSSCHHRDADNTAYVLRFEHRIKHRNHFECYIHSVHENEALLTKFYSARTLFHVIFWPVGLFLTSIACVLFAYLVDRCRVWTGDQSMI 241
BLAST of Calcium activated potassium channel subunit vs. TrEMBL
Match: A0A4E0RIE4 (Calcium activated potassium channel subunit OS=Fasciola hepatica OX=6192 GN=D915_001494 PE=4 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 7.216e-29 Identity = 69/198 (34.85%), Postives = 104/198 (52.53%), Query Frame = 2 Query: 566 KLIYLSSMTFLTSGFILECILLHLMLTPYLAEQEFEQTTCVYRNSSSRFILLSDLQLRCENKCTKDTGKFPCVWLLVNYVIPNSGQRQLQDGXXXXXXXXXXXXKKQRCSTSPCHLLLSDNIDWVISFDRTLYSKHNFSCYYNTKDHMSVLLYKLYPKSLILHCILWPFGIFIVGLVGITFTALIAGCDVWKNEDVVI 1159 K YL+ T +T+ FI+ECIL+HL++ PY+ E F T+C Y +S + ++CENKC+KD +FPC+ +LV+Y + LYD TY YK C+TS CH +DN WV F + + +F CY + LL+K Y + + H + WP +F LV ++ ++ C VW + VI Sbjct: 20 KFTYLTCATVITTSFIIECILVHLVVQPYIHESAFSHTSCTYLHSD-----IIRQNVKCENKCSKDRSRFPCLKVLVSYYTGGDNHTVV----LYDNIATYQHYKYLGCATSSCHHRDTDNTAWVDQFRLRVQHQKHFGCYIHATHEDEALLFKFYSTNTVFHAVFWPVSLFCTSLVCVSCAYVVDRCRVWTGDQSVI 208
BLAST of Calcium activated potassium channel subunit vs. Planmine SMEST
Match: SMESG000053268.1 (SMESG000053268.1) HSP 1 Score: 421.779 bits (1083), Expect = 1.252e-148 Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 2 Query: 509 MEKNFNGVLRNKCNETGISKLIYLSSMTFLTSGFILECILLHLMLTPYLAEQEFEQTTCVYRNSSSRFILLSDLQLRCENKCTKDTGKFPCVWLLVNYVIPNSGQRQLQDGXXXXXXXXXXXXKKQRCSTSPCHLLLSDNIDWVISFDRTLYSKHNFSCYYNTKDHMSVLLYKLYPKSLILHCILWPFGIFIVGLVGITFTALIAGCDVWKNEDVVIA 1162 MEKNFNGVLRNKCNETGISKLIYLSSMTFLTSGFILECILLHLMLTPYLAEQEFEQTTCVYRNSSSRFILLSDLQLRCENKCTKDTGKFPCVWLLVNYVIPNSGQRQLQDGYLYDYYRTYNRYKKQRCSTSPCHLLLSDNIDWVISFDRTLYSKHNFSCYYNTKDHMSVLLYKLYPKSLILHCILWPFGIFIVGLVGITFTALIAGCDVWKNEDVVIA Sbjct: 1 MEKNFNGVLRNKCNETGISKLIYLSSMTFLTSGFILECILLHLMLTPYLAEQEFEQTTCVYRNSSSRFILLSDLQLRCENKCTKDTGKFPCVWLLVNYVIPNSGQRQLQDGYLYDYYRTYNRYKKQRCSTSPCHLLLSDNIDWVISFDRTLYSKHNFSCYYNTKDHMSVLLYKLYPKSLILHCILWPFGIFIVGLVGITFTALIAGCDVWKNEDVVIA 218
BLAST of Calcium activated potassium channel subunit vs. Planmine SMEST
Match: SMESG000032303.1 (SMESG000032303.1) HSP 1 Score: 158.303 bits (399), Expect = 8.366e-46 Identity = 90/213 (42.25%), Postives = 135/213 (63.38%), Query Frame = 2 Query: 530 VLRNKCNETGISKLIYLSSMTFLTSGFILECILLHLMLTPYLAEQEFEQTTCVYRNSS--SRFILLSDLQLRCENKCTKDTGKFPCVWLLVNYVIPNSGQRQLQDGXXXXXXXXXXXXKKQRCSTSPCHLLLSDNIDWVISFDRTLYSKHNFSCYYNTKDHMSVLLYKLYPKSLILHCILWPFGIFIVGLVGITFTALIAGCDVWKNEDVVIA 1162 L CN GISK+ YL+S T T+G I+ECILL+L++ PYL+EQ++ TTC Y S + IL +CENKCTK+T F C+++ V+Y +S +QL GYL+D RT++++K +CST PC LL DN W ++F+ +LY + F C+Y + +VLLYKL +++++CI+WP + +GL+ + T AGC +W + VIA Sbjct: 5 ALDKICNYYGISKVTYLASATLFTAGLIIECILLYLVVIPYLSEQKYINTTCHYTEGSKIGKMILK-----KCENKCTKETSFFYCLFIKVSYKKIHS--KQLTIGYLFDNLRTFSKHKVDKCSTMPCLGLLEDNRRWAMAFNESLYRRTYFQCFYKDDETTNVLLYKLQSPTIVMNCIVWPCTLLTLGLISLFLTWYCAGCKIWSQDKTVIA 210
BLAST of Calcium activated potassium channel subunit vs. Planmine SMEST
Match: SMESG000017226.1 (SMESG000017226.1) HSP 1 Score: 127.872 bits (320), Expect = 3.553e-34 Identity = 74/199 (37.19%), Postives = 108/199 (54.27%), Query Frame = 2 Query: 566 KLIYLSSMTFLTSGFILECILLHLMLTPYLAEQEFEQTTCVYRNSSSRFILLSDLQLRCENKCTKDTGKFPCVWLLVNYVIPNSGQRQLQDGXXXXXXXXXXXXKKQRCSTSPCHLLLSDNIDWVISFDRTLYSKHNFSCYYNTKDHMSVLLYKLYPKSLILHCILWPFGIFIVGLVGITFTALIAGCDVWKNEDVVIA 1162 K+IYL+S++ S FI+ CIL+HL++ PYL E F C + + D ++RCENKC+KD KF C+ ++VNY N ++ YLY++ T + K C+TSPCH DN V F+R + + NF+C+ + K LLYK Y S LHC LWP + + +T I C VW ++ VI+ Sbjct: 40 KIIYLASISIFVSTFIVVCILMHLVIIPYLHETSFISAQCNLNETR-----MGD-EVRCENKCSKDRSKFKCLQIIVNYRRNN----KMFSAYLYEHVATLRHFSKNHCATSPCHKEEIDNYLIVSRFNRDIKRQRNFNCFTSIKHPSEALLYKFYDASTFLHCTLWPLLLIVSSATSLTVIYQIDKCRVWHDDRTVIS 228
BLAST of Calcium activated potassium channel subunit vs. Planmine SMEST
Match: SMESG000055809.1 (SMESG000055809.1) HSP 1 Score: 105.916 bits (263), Expect = 3.098e-26 Identity = 73/211 (34.60%), Postives = 105/211 (49.76%), Query Frame = 2 Query: 557 GISKLIYLSSMTFLTSGFILECILLHLMLTPYLAEQEFEQTTCVYRNSSSRFILLSDLQLRCENKCTKDTGKFPCVWLLVNYVIPNS----GQRQLQDGXXXXXXXXXXXXKKQRCSTSPCHLLLSDNIDWV-----ISFDRTLYSKHNFSCYYNTKDHMSVLLYKLYPKSLILHCILWPFGIFIVGLVGITFTALIAGCDVWKNEDVVIA 1162 + K +Y+SS++ SGFI+ECILLHL+++PY E +F C N S+R+ ++C NKC+K+ KF C + V Y S + GYL+D T + +K ++C SPC+ L DN + FD L S F CY N VLLYK Y + CILWP + ++ + I I C VW N+ +I Sbjct: 11 SVLKFLYISSLSVAVSGFIIECILLHLIISPYGHETQFVDGKCTVLNISTRY------GIKCVNKCSKERSKFFCSTVKVKYQSKISLGRLSNQTWYHGYLFDQITTLHNFKDEKCIISPCYKLKLDNYIETRNFLHVHFDH-LESNSAFPCYVNRYLTNEVLLYKFYSYETYISCILWPITLIVLSVFIILLCYWIDRCKVWANDKAIIT 214
BLAST of Calcium activated potassium channel subunit vs. Planmine SMEST
Match: SMESG000047387.1 (SMESG000047387.1) HSP 1 Score: 96.6709 bits (239), Expect = 4.861e-23 Identity = 62/205 (30.24%), Postives = 100/205 (48.78%), Query Frame = 2 Query: 530 VLRNKCNETGISKLIYLSSMTFLTSGFILECILLHLMLTPYLAEQEFEQTTCVYRNSSSRFILLSDLQLRCENKCTKDTGKFPCVWLLVNYVIPNSGQRQLQDGXXXXXXXXXXXXKKQRCSTSPCHLLLSDNIDWVISFDRTLYSKHNFSCYYNTKDHMSVLLYKLYPKSLILHCILWPFGIFIVGLVGITFTALIAGCDVWKN 1144 ++ C + + K +Y+S T I+ IL+HL++ P+ E F +TC N++ ++CENKC+KD FPC+ + Y + Q L Y+YD+ T + Y+K +C+ SPC DN V F + F+CY N + VLLYK Y + HC+ WP G+ ++ L+ + C+VW + Sbjct: 3 IISKSCAQDWV-KFLYISCSTLSLCALIVGAILIHLVVIPFTHENSFYSSTCTLINTNIT------TSIKCENKCSKDRSMFPCLQITAKYT--DLDQEFL--AYVYDHIATLSHYRKSQCAISPCFSSTKDNGIIVSEFQSRMRKTPTFACYINAEHRDEVLLYKFYSIGMFWHCVAWPSGLLVISLLILAVLYSKDKCNVWND 196 The following BLAST results are available for this feature:
BLAST of Calcium activated potassium channel subunit vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of Calcium activated potassium channel subunit vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Calcium activated potassium channel subunit vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Calcium activated potassium channel subunit vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of Calcium activated potassium channel subunit vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 1
BLAST of Calcium activated potassium channel subunit vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 1
BLAST of Calcium activated potassium channel subunit vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 1
BLAST of Calcium activated potassium channel subunit vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Calcium activated potassium channel subunit vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of Calcium activated potassium channel subunit vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Calcium activated potassium channel subunit vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Calcium activated potassium channel subunit vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of Calcium activated potassium channel subunit vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of Calcium activated potassium channel subunit vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30006112 ID=SMED30006112|Name=Calcium activated potassium channel subunit|organism=Schmidtea mediterranea sexual|type=transcript|length=1331bpback to top protein sequence of SMED30006112-orf-1 >SMED30006112-orf-1 ID=SMED30006112-orf-1|Name=SMED30006112-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=219bp MEKNFNGVLRNKCNETGISKLIYLSSMTFLTSGFILECILLHLMLTPYLAback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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