Tetratricopeptide helical
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30006111 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 3
Homology
BLAST of Tetratricopeptide helical vs. Ensembl Human
Match: FAM78A (family with sequence similarity 78 member A [Source:HGNC Symbol;Acc:HGNC:25465]) HSP 1 Score: 94.3597 bits (233), Expect = 1.309e-21 Identity = 61/188 (32.45%), Postives = 96/188 (51.06%), Query Frame = 1 Query: 1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSD-CQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555 G G S E L+ G + I+DSDG YP+Y + I T R + + + D F+PSV W +P S LT+I R Q F W+VA +S +++ +L+ L W +L ++++P PLG+R + QD+ I + E +P +A P+ N AQ L+W PK + +++PPK Sbjct: 104 GEQGMSSWELPDLQEGKIQAISDSDGVNYPWYGNTTETCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTWLVATN-----TSTNDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNE---PIPPSALVKPNANDAQVLMWRPK--YGQPLVVIPPK 281
BLAST of Tetratricopeptide helical vs. Ensembl Human
Match: FAM78B (family with sequence similarity 78 member B [Source:HGNC Symbol;Acc:HGNC:13495]) HSP 1 Score: 93.5893 bits (231), Expect = 1.331e-21 Identity = 59/187 (31.55%), Postives = 92/187 (49.20%), Query Frame = 1 Query: 10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDEN---IITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555 G S E L+ G K I+DSDG YP+Y + + T + + + + D F+PSV W +P S LT I R Q F W+VA+ ++ E +L+ ++W ++ +++DP LG+R + V Q E + MEP +P A P+ N AQ L+W PK +++PPK Sbjct: 80 GMSSWELPDLREGRVKAISDSDGVSYPWYGNTTETVTLVGPTNKISRFSVSMNDNFYPSVTWAVPVSDSNVPLLTRIKRDQSFTTWLVAMN-----TTTKEKIILQTIKWRMRVDIEVDPLQLLGQRARLVGRTQQEQPRILSRMEP-----IPPNALVKPNANDAQVLMWRPKRGPPL--VVIPPK 254
BLAST of Tetratricopeptide helical vs. Ensembl Human
Match: FAM78B (family with sequence similarity 78 member B [Source:HGNC Symbol;Acc:HGNC:13495]) HSP 1 Score: 93.5893 bits (231), Expect = 1.481e-21 Identity = 59/187 (31.55%), Postives = 92/187 (49.20%), Query Frame = 1 Query: 10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDEN---IITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555 G S E L+ G K I+DSDG YP+Y + + T + + + + D F+PSV W +P S LT I R Q F W+VA+ ++ E +L+ ++W ++ +++DP LG+R + V Q E + MEP +P A P+ N AQ L+W PK +++PPK Sbjct: 83 GMSSWELPDLREGRVKAISDSDGVSYPWYGNTTETVTLVGPTNKISRFSVSMNDNFYPSVTWAVPVSDSNVPLLTRIKRDQSFTTWLVAMN-----TTTKEKIILQTIKWRMRVDIEVDPLQLLGQRARLVGRTQQEQPRILSRMEP-----IPPNALVKPNANDAQVLMWRPKRGPPL--VVIPPK 257
BLAST of Tetratricopeptide helical vs. Ensembl Human
Match: FAM78B (family with sequence similarity 78 member B [Source:HGNC Symbol;Acc:HGNC:13495]) HSP 1 Score: 93.5893 bits (231), Expect = 1.562e-21 Identity = 59/187 (31.55%), Postives = 92/187 (49.20%), Query Frame = 1 Query: 10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDEN---IITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555 G S E L+ G K I+DSDG YP+Y + + T + + + + D F+PSV W +P S LT I R Q F W+VA+ ++ E +L+ ++W ++ +++DP LG+R + V Q E + MEP +P A P+ N AQ L+W PK +++PPK Sbjct: 87 GMSSWELPDLREGRVKAISDSDGVSYPWYGNTTETVTLVGPTNKISRFSVSMNDNFYPSVTWAVPVSDSNVPLLTRIKRDQSFTTWLVAMN-----TTTKEKIILQTIKWRMRVDIEVDPLQLLGQRARLVGRTQQEQPRILSRMEP-----IPPNALVKPNANDAQVLMWRPKRGPPL--VVIPPK 261
BLAST of Tetratricopeptide helical vs. Ensembl Human
Match: FAM78B (family with sequence similarity 78 member B [Source:HGNC Symbol;Acc:HGNC:13495]) HSP 1 Score: 93.5893 bits (231), Expect = 1.562e-21 Identity = 59/187 (31.55%), Postives = 92/187 (49.20%), Query Frame = 1 Query: 10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDEN---IITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555 G S E L+ G K I+DSDG YP+Y + + T + + + + D F+PSV W +P S LT I R Q F W+VA+ ++ E +L+ ++W ++ +++DP LG+R + V Q E + MEP +P A P+ N AQ L+W PK +++PPK Sbjct: 87 GMSSWELPDLREGRVKAISDSDGVSYPWYGNTTETVTLVGPTNKISRFSVSMNDNFYPSVTWAVPVSDSNVPLLTRIKRDQSFTTWLVAMN-----TTTKEKIILQTIKWRMRVDIEVDPLQLLGQRARLVGRTQQEQPRILSRMEP-----IPPNALVKPNANDAQVLMWRPKRGPPL--VVIPPK 261
BLAST of Tetratricopeptide helical vs. Ensembl Zebrafish
Match: fam78aa (family with sequence similarity 78 member Aa [Source:ZFIN;Acc:ZDB-GENE-061027-351]) HSP 1 Score: 99.3673 bits (246), Expect = 8.073e-24 Identity = 60/191 (31.41%), Postives = 99/191 (51.83%), Query Frame = 1 Query: 1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPY---SGGVWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPE---RSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555 G G S E L+ G + I+DSDG YP+Y + ++ I T + T L + + D F PSV W +P S L+ I R Q+F W+VA+ + +E+ +L+ +RW ++ +K+DP PLG+R V E ++ +P+ + +P A P+ N AQ L+W P+ + +++PPK Sbjct: 83 GNEGVSSWELPELRCGQIQAISDSDGVNYPWYGCTTEMYTIVGPTKKSTKLTVSMNDNFCPSVTWSVPVGTTSSPPLLSAIQRDQRFTTWLVAMNE-----TTAEMVLLRTIRWRMQICVKVDPKRPLGQRATVV-----EPLVQEQPQVQTHNEPIPINALVKPNANDAQVLMWRPR--NGEPIMVIPPK 261
BLAST of Tetratricopeptide helical vs. Ensembl Zebrafish
Match: fam78ba (family with sequence similarity 78 member Ba [Source:ZFIN;Acc:ZDB-GENE-140227-3]) HSP 1 Score: 97.8265 bits (242), Expect = 4.828e-23 Identity = 60/187 (32.09%), Postives = 92/187 (49.20%), Query Frame = 1 Query: 1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555 G G S E L+ G K I+DSDG YP+Y + + T + + L + + D F+PSV W +P S LT I R Q F+ W+VA+ + E VL+ +RW ++ +++DP MPLG R K + E + + +P A P+ N AQ L+W P+ +++PPK Sbjct: 108 GDIGMSSWELPELREGRVKAISDSDGVSYPWYGNTTETVTLSGPTSKPSRLTVSMNDNFYPSVTWAVPISNSNTPMLTHITRDQSFITWLVALN-----ADTKERIVLQTVRWRMRVDIEVDPSMPLGSRAKLMGRPHQEQPHIL--SNNEPIPPNALGRPNANDAQVLMWRPRRGQPL--VVIPPK 285
BLAST of Tetratricopeptide helical vs. Ensembl Zebrafish
Match: fam78ab (family with sequence similarity 78 member Ab [Source:ZFIN;Acc:ZDB-GENE-080220-25]) HSP 1 Score: 96.6709 bits (239), Expect = 7.655e-23 Identity = 60/187 (32.09%), Postives = 91/187 (48.66%), Query Frame = 1 Query: 1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGGV--WLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555 G G S E L+ G + I+DSDG YP+Y + I T + T + + D F+PSV W +P S L+ I R Q F W+VA+ S EV VL+ +RW +L++ +DP PLG+R E + ++ +P+ A P+ N AQ L+W P+ +++PPK Sbjct: 84 GSKGMSSWELPDLRDGKIQAISDSDGVNYPWYGNTTETCTITGPTKKDTRFTVSMNDNFYPSVTWGVPVSDSSVPQLSSIWRDQSFSTWLVAISQ-----STGEVLVLQTVRWRMRLHIAVDPEKPLGQRAALCEPTAQEPPQIL--GKNEAIPANALVKPNANDAQVLMWRPRVGEPV--VVIPPK 261
BLAST of Tetratricopeptide helical vs. Ensembl Zebrafish
Match: fam78bb (family with sequence similarity 78 member Bb [Source:ZFIN;Acc:ZDB-GENE-030131-7811]) HSP 1 Score: 88.1965 bits (217), Expect = 8.735e-20 Identity = 56/175 (32.00%), Postives = 85/175 (48.57%), Query Frame = 1 Query: 1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDC-QDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPK 516 G G S E L+ GL K I+DSDG YP+Y + + T + + + + D F+PSV W +P S LT I R Q F W+VA+ + E +L+ ++W K+ + +DP PL R + + QD+ + E ++P A P+ N AQ L+W PK Sbjct: 84 GDLGMSSWELPELREGLVKAISDSDGLSYPWYGNTTETVTLSGPTSKPSRFTVSMNDNFYPSVTWAVPVSESNVPLLTRIKRDQSFTTWLVALN-----VTTQEKILLQTVKWRMKVDIAVDPSKPLSSRARLIGRVHQDQPKVLTHME---QIPPNALGKPNANDAQVLMWRPK 250
BLAST of Tetratricopeptide helical vs. Ensembl Xenopus
Match: fam78a (family with sequence similarity 78 member A [Source:NCBI gene;Acc:100145734]) HSP 1 Score: 98.2117 bits (243), Expect = 7.980e-23 Identity = 57/188 (30.32%), Postives = 98/188 (52.13%), Query Frame = 1 Query: 1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGGVW--LTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPKQ 558 G G S E L+SG I+DSDG YP+Y + + T R++ + + D F+PSV W +P + G LT I+R Q F W+VA + +++ +L ++W +L ++++P +PLG+R K E + ++ LP +A P+ N AQ L+W PK+ + +++PP++ Sbjct: 138 GDLGKSSWELPDLESGKITAISDSDGVNYPWYGNTTETCTVTGPTKRESKFTVSMNDNFYPSVTWAVPVNDGNVPKLTGIHRDQSFTTWLVATNM-----NTNDIIILHTIKWRMRLEIEVNPNLPLGQRAKLKEPFGQEQPQVL--TKNEPLPPSALVKPNANDAQVLMWRPKK--RQGEVVIPPRR 316
BLAST of Tetratricopeptide helical vs. Ensembl Xenopus
Match: stard4 (StAR related lipid transfer domain containing 4 [Source:Xenbase;Acc:XB-GENE-5944117]) HSP 1 Score: 93.5893 bits (231), Expect = 1.560e-21 Identity = 60/188 (31.91%), Postives = 93/188 (49.47%), Query Frame = 1 Query: 10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDEN---IITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPKQ 558 G S E L+ G K I+DSDG YP+Y + + T + + + + D F+PSV W +P S LT I R Q F W+VA+ ++ E +L+ ++W ++ +++DP LG+R + V Q E + MEP +P A P+ N AQ L+W PK I++PPK+ Sbjct: 87 GMSSWELPDLREGRVKAISDSDGVSYPWYGNTTETVTLMGPTNKISRFSVSMNDNFYPSVTWAVPISESNVPLLTRIKRDQSFTTWLVAMN-----TTTKEKIILQTIKWRMRVDIEVDPNQMLGKRARLVGRTQQEQPRILSRMEP-----IPPNALVKPNANDAQVLMWRPKRGQPV--IVIPPKK 262
BLAST of Tetratricopeptide helical vs. Ensembl Xenopus
Match: fam78a (family with sequence similarity 78 member A [Source:NCBI gene;Acc:100145734]) HSP 1 Score: 80.4925 bits (197), Expect = 1.148e-16 Identity = 43/132 (32.58%), Postives = 71/132 (53.79%), Query Frame = 1 Query: 1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGGVW--LTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVK 390 G G S E L+SG I+DSDG YP+Y + + T R++ + + D F+PSV W +P + G LT I+R Q F W+VA + +++ +L ++W +L ++++P +PLG+R K Sbjct: 138 GDLGKSSWELPDLESGKITAISDSDGVNYPWYGNTTETCTVTGPTKRESKFTVSMNDNFYPSVTWAVPVNDGNVPKLTGIHRDQSFTTWLVATNM-----NTNDIIILHTIKWRMRLEIEVNPNLPLGQRAK 264
BLAST of Tetratricopeptide helical vs. Ensembl Mouse
Match: Fam78b (family with sequence similarity 78, member B [Source:MGI Symbol;Acc:MGI:2443050]) HSP 1 Score: 93.5893 bits (231), Expect = 9.138e-22 Identity = 59/187 (31.55%), Postives = 92/187 (49.20%), Query Frame = 1 Query: 10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDEN---IITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555 G S E L+ G K I+DSDG YP+Y + + T + + + + D F+PSV W +P S LT I R Q F W+VA+ ++ E +L+ ++W ++ +++DP LG+R + V Q E + MEP +P A P+ N AQ L+W PK +++PPK Sbjct: 80 GMSSWELPDLREGRVKAISDSDGVSYPWYGNTTETVTLVGPTNKISRFSVSMNDNFYPSVTWAVPVSDSNVPLLTRIKRDQSFTTWLVAMN-----TTTKEKIILQTIKWRMRVDIEVDPLQLLGQRARLVGRTQQEQPRILSRMEP-----IPPNALVKPNANDAQVLMWRPKRGPPL--VVIPPK 254
BLAST of Tetratricopeptide helical vs. Ensembl Mouse
Match: Fam78a (family with sequence similarity 78, member A [Source:MGI Symbol;Acc:MGI:2443569]) HSP 1 Score: 94.3597 bits (233), Expect = 9.354e-22 Identity = 61/188 (32.45%), Postives = 96/188 (51.06%), Query Frame = 1 Query: 1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSD-CQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555 G G S E L+ G + I+DSDG YP+Y + I T R + + + D F+PSV W +P S LT+I R Q F W+VA +S +++ +L+ L W +L ++++P PLG+R + QD+ I + E +P +A P+ N AQ L+W PK + +++PPK Sbjct: 104 GEQGMSSWELPDLQEGKIEAISDSDGVNYPWYGNTTETCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTWLVATN-----TSTNDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNE---PIPPSALVKPNANDAQVLMWRPK--YGQPLVVIPPK 281
BLAST of Tetratricopeptide helical vs. Ensembl Mouse
Match: Fam78a (family with sequence similarity 78, member A [Source:MGI Symbol;Acc:MGI:2443569]) HSP 1 Score: 94.3597 bits (233), Expect = 9.354e-22 Identity = 61/188 (32.45%), Postives = 96/188 (51.06%), Query Frame = 1 Query: 1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSD-CQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555 G G S E L+ G + I+DSDG YP+Y + I T R + + + D F+PSV W +P S LT+I R Q F W+VA +S +++ +L+ L W +L ++++P PLG+R + QD+ I + E +P +A P+ N AQ L+W PK + +++PPK Sbjct: 104 GEQGMSSWELPDLQEGKIEAISDSDGVNYPWYGNTTETCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTWLVATN-----TSTNDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNE---PIPPSALVKPNANDAQVLMWRPK--YGQPLVVIPPK 281
BLAST of Tetratricopeptide helical vs. Ensembl Mouse
Match: Fam78b (family with sequence similarity 78, member B [Source:MGI Symbol;Acc:MGI:2443050]) HSP 1 Score: 93.5893 bits (231), Expect = 1.017e-21 Identity = 59/187 (31.55%), Postives = 92/187 (49.20%), Query Frame = 1 Query: 10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDEN---IITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555 G S E L+ G K I+DSDG YP+Y + + T + + + + D F+PSV W +P S LT I R Q F W+VA+ ++ E +L+ ++W ++ +++DP LG+R + V Q E + MEP +P A P+ N AQ L+W PK +++PPK Sbjct: 83 GMSSWELPDLREGRVKAISDSDGVSYPWYGNTTETVTLVGPTNKISRFSVSMNDNFYPSVTWAVPVSDSNVPLLTRIKRDQSFTTWLVAMN-----TTTKEKIILQTIKWRMRVDIEVDPLQLLGQRARLVGRTQQEQPRILSRMEP-----IPPNALVKPNANDAQVLMWRPKRGPPL--VVIPPK 257
BLAST of Tetratricopeptide helical vs. Ensembl Mouse
Match: Fam78b (family with sequence similarity 78, member B [Source:MGI Symbol;Acc:MGI:2443050]) HSP 1 Score: 93.5893 bits (231), Expect = 1.073e-21 Identity = 59/187 (31.55%), Postives = 92/187 (49.20%), Query Frame = 1 Query: 10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDEN---IITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555 G S E L+ G K I+DSDG YP+Y + + T + + + + D F+PSV W +P S LT I R Q F W+VA+ ++ E +L+ ++W ++ +++DP LG+R + V Q E + MEP +P A P+ N AQ L+W PK +++PPK Sbjct: 87 GMSSWELPDLREGRVKAISDSDGVSYPWYGNTTETVTLVGPTNKISRFSVSMNDNFYPSVTWAVPVSDSNVPLLTRIKRDQSFTTWLVAMN-----TTTKEKIILQTIKWRMRVDIEVDPLQLLGQRARLVGRTQQEQPRILSRMEP-----IPPNALVKPNANDAQVLMWRPKRGPPL--VVIPPK 261
BLAST of Tetratricopeptide helical vs. UniProt/SwissProt
Match: sp|Q5JUQ0|FA78A_HUMAN (Protein FAM78A OS=Homo sapiens OX=9606 GN=FAM78A PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.286e-21 Identity = 61/188 (32.45%), Postives = 96/188 (51.06%), Query Frame = 1 Query: 1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSD-CQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555 G G S E L+ G + I+DSDG YP+Y + I T R + + + D F+PSV W +P S LT+I R Q F W+VA +S +++ +L+ L W +L ++++P PLG+R + QD+ I + E +P +A P+ N AQ L+W PK + +++PPK Sbjct: 104 GEQGMSSWELPDLQEGKIQAISDSDGVNYPWYGNTTETCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTWLVATN-----TSTNDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNE---PIPPSALVKPNANDAQVLMWRPK--YGQPLVVIPPK 281
BLAST of Tetratricopeptide helical vs. UniProt/SwissProt
Match: sp|Q8C552|FA78A_MOUSE (Protein FAM78A OS=Mus musculus OX=10090 GN=Fam78a PE=1 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.543e-21 Identity = 61/188 (32.45%), Postives = 96/188 (51.06%), Query Frame = 1 Query: 1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSD-CQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555 G G S E L+ G + I+DSDG YP+Y + I T R + + + D F+PSV W +P S LT+I R Q F W+VA +S +++ +L+ L W +L ++++P PLG+R + QD+ I + E +P +A P+ N AQ L+W PK + +++PPK Sbjct: 104 GEQGMSSWELPDLQEGKIEAISDSDGVNYPWYGNTTETCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTWLVATN-----TSTNDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNE---PIPPSALVKPNANDAQVLMWRPK--YGQPLVVIPPK 281
BLAST of Tetratricopeptide helical vs. UniProt/SwissProt
Match: sp|Q8BQN5|FA78B_MOUSE (Protein FAM78B OS=Mus musculus OX=10090 GN=Fam78b PE=2 SV=2) HSP 1 Score: 93.5893 bits (231), Expect = 7.503e-21 Identity = 59/187 (31.55%), Postives = 92/187 (49.20%), Query Frame = 1 Query: 10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDEN---IITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555 G S E L+ G K I+DSDG YP+Y + + T + + + + D F+PSV W +P S LT I R Q F W+VA+ ++ E +L+ ++W ++ +++DP LG+R + V Q E + MEP +P A P+ N AQ L+W PK +++PPK Sbjct: 87 GMSSWELPDLREGRVKAISDSDGVSYPWYGNTTETVTLVGPTNKISRFSVSMNDNFYPSVTWAVPVSDSNVPLLTRIKRDQSFTTWLVAMN-----TTTKEKIILQTIKWRMRVDIEVDPLQLLGQRARLVGRTQQEQPRILSRMEP-----IPPNALVKPNANDAQVLMWRPKRGPPL--VVIPPK 261
BLAST of Tetratricopeptide helical vs. UniProt/SwissProt
Match: sp|Q5VT40|FA78B_HUMAN (Protein FAM78B OS=Homo sapiens OX=9606 GN=FAM78B PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 7.503e-21 Identity = 59/187 (31.55%), Postives = 92/187 (49.20%), Query Frame = 1 Query: 10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDEN---IITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555 G S E L+ G K I+DSDG YP+Y + + T + + + + D F+PSV W +P S LT I R Q F W+VA+ ++ E +L+ ++W ++ +++DP LG+R + V Q E + MEP +P A P+ N AQ L+W PK +++PPK Sbjct: 87 GMSSWELPDLREGRVKAISDSDGVSYPWYGNTTETVTLVGPTNKISRFSVSMNDNFYPSVTWAVPVSDSNVPLLTRIKRDQSFTTWLVAMN-----TTTKEKIILQTIKWRMRVDIEVDPLQLLGQRARLVGRTQQEQPRILSRMEP-----IPPNALVKPNANDAQVLMWRPKRGPPL--VVIPPK 261
BLAST of Tetratricopeptide helical vs. TrEMBL
Match: A0A183AFW2 (Uncharacterized protein OS=Echinostoma caproni OX=27848 GN=ECPE_LOCUS5847 PE=4 SV=1) HSP 1 Score: 334.339 bits (856), Expect = 5.069e-111 Identity = 153/212 (72.17%), Postives = 182/212 (85.85%), Query Frame = 1 Query: 10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGGVWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPKQIIVPWDKWVSDMLGSKVRIRKPSEVIEMN 645 G S EFHPLKSGLRK+INDSDG+QYPFYS + SL+NIKKG VRK +L+LQ+KDYFHPSVVWELPYSGGV LT+INR+QKFLIW+VA+K+GK+ S E++VLKK+RWEY L+MK+DPFMPLG RV+ + D QD II M+P++SYKLP AAT PPHCNAAQSLIWYPK+ HKH RILVPPKQIIVPW++WV DMLG R+RKP+EV E+ Sbjct: 78 GKSLWEFHPLKSGLRKLINDSDGRQYPFYSVNQSLYNIKKGPVRKVTLNLQVKDYFHPSVVWELPYSGGVRLTEINRQQKFLIWLVAIKYGKKLSCKDEITVLKKIRWEYDLHMKVDPFMPLGSRVRKIFDVQDSGIIMMDPDKSYKLPIAATFPPHCNAAQSLIWYPKDPHKHARILVPPKQIIVPWEEWVHDMLGPNARVRKPNEVSEIG 289
BLAST of Tetratricopeptide helical vs. TrEMBL
Match: A0A504Z1L3 (Tetratricopeptide helical OS=Fasciola gigantica OX=46835 GN=FGIG_03211 PE=4 SV=1) HSP 1 Score: 334.339 bits (856), Expect = 5.238e-111 Identity = 153/212 (72.17%), Postives = 182/212 (85.85%), Query Frame = 1 Query: 10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGGVWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPKQIIVPWDKWVSDMLGSKVRIRKPSEVIEMN 645 G S EFHPLKSGLRK+INDSDG+QYPFYS + SL+NIKKG VRK +L+LQ+KDYFHPSVVWELPYSGGV LT+INR+QKFLIW+VA+K+GK+ S E++VLKK+RWEY L+MK+DPFMPLG RV+ + D QD II M+P++SYKLP AAT PPHCNAAQSLIWYPK+ HKH RILVPPKQIIVPW++WV DMLG R+RKP+EV E+ Sbjct: 78 GKSLWEFHPLKSGLRKLINDSDGRQYPFYSVNQSLYNIKKGPVRKVTLNLQVKDYFHPSVVWELPYSGGVRLTEINRQQKFLIWLVAIKYGKKLSYKDEITVLKKIRWEYDLHMKVDPFMPLGSRVRKIFDVQDSGIIMMDPDKSYKLPIAATFPPHCNAAQSLIWYPKDPHKHARILVPPKQIIVPWEEWVHDMLGPNARVRKPNEVSEIG 289
BLAST of Tetratricopeptide helical vs. TrEMBL
Match: A0A4E0RUM5 (Tetratricopeptide helical OS=Fasciola hepatica OX=6192 GN=D915_003591 PE=4 SV=1) HSP 1 Score: 334.339 bits (856), Expect = 5.238e-111 Identity = 153/212 (72.17%), Postives = 182/212 (85.85%), Query Frame = 1 Query: 10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGGVWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPKQIIVPWDKWVSDMLGSKVRIRKPSEVIEMN 645 G S EFHPLKSGLRK+INDSDG+QYPFYS + SL+NIKKG VRK +L+LQ+KDYFHPSVVWELPYSGGV LT+INR+QKFLIW+VA+K+GK+ S E++VLKK+RWEY L+MK+DPFMPLG RV+ + D QD II M+P++SYKLP AAT PPHCNAAQSLIWYPK+ HKH RILVPPKQIIVPW++WV DMLG R+RKP+EV E+ Sbjct: 78 GKSLWEFHPLKSGLRKLINDSDGRQYPFYSVNQSLYNIKKGPVRKVTLNLQVKDYFHPSVVWELPYSGGVRLTEINRQQKFLIWLVAIKYGKKLSYKDEITVLKKIRWEYDLHMKVDPFMPLGSRVRKIFDVQDSGIIMMDPDKSYKLPIAATFPPHCNAAQSLIWYPKDPHKHARILVPPKQIIVPWEEWVHDMLGPNARVRKPNEVSEIG 289
BLAST of Tetratricopeptide helical vs. TrEMBL
Match: A0A4S2L769 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_009551 PE=4 SV=1) HSP 1 Score: 331.643 bits (849), Expect = 7.341e-110 Identity = 150/212 (70.75%), Postives = 182/212 (85.85%), Query Frame = 1 Query: 10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGGVWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPKQIIVPWDKWVSDMLGSKVRIRKPSEVIEMN 645 G S EFHPLKSGLRK+INDSDG+QYPFYS + SL+NIKKG VRK +L+LQ+KDYFHPSVVWELPYSGGV LT+INR+QKFLIW+VA+K+GK+ S E++VLKK+RWEY L+MK+DPFMPLG RV+ + D QD I+ M+P+++Y+LP AAT PPHCNAAQSLIWYPK+ HKH RILVPPKQIIVPW++WV DMLG R+RKP+EV E+ Sbjct: 78 GKSLWEFHPLKSGLRKLINDSDGRQYPFYSVNQSLYNIKKGPVRKLTLNLQVKDYFHPSVVWELPYSGGVRLTEINRQQKFLIWLVAIKYGKKLSCKDEITVLKKIRWEYDLHMKVDPFMPLGSRVRKIYDVQDSAIMMMDPDKTYRLPIAATFPPHCNAAQSLIWYPKDPHKHARILVPPKQIIVPWEEWVHDMLGRNARVRKPNEVSEIG 289
BLAST of Tetratricopeptide helical vs. TrEMBL
Match: H2KUH8 (Protein FAM78B OS=Clonorchis sinensis OX=79923 GN=Fam78b PE=4 SV=1) HSP 1 Score: 330.872 bits (847), Expect = 1.099e-109 Identity = 150/212 (70.75%), Postives = 182/212 (85.85%), Query Frame = 1 Query: 10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGGVWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPKQIIVPWDKWVSDMLGSKVRIRKPSEVIEMN 645 G S EFHPLKSGLRK+INDSDG+QYPFYS + SL+NIKKG VRK +L+LQ+KDYFHPSVVWELPYSGGV LT+INR+QKFLIW+VA+K+GK+ S E++VLKK+RWEY L+MK+DPFMPLG RV+ + D QD I+ M+P+++Y+LP AAT PPHCNAAQSLIWYPK+ HKH RILVPPKQIIVPW++WV DMLG R+RKP+EV E+ Sbjct: 78 GKSLWEFHPLKSGLRKLINDSDGRQYPFYSVNQSLYNIKKGPVRKLTLNLQVKDYFHPSVVWELPYSGGVRLTEINRQQKFLIWLVAIKYGKKLSCKDEITVLKKIRWEYDLHMKVDPFMPLGSRVRKIYDVQDSAIMMMDPDKTYRLPIAATFPPHCNAAQSLIWYPKDPHKHARILVPPKQIIVPWEEWVHDMLGRNARVRKPNEVSEIG 289
BLAST of Tetratricopeptide helical vs. Ensembl Cavefish
Match: fam78aa (protein FAM78A-like [Source:NCBI gene;Acc:103022336]) HSP 1 Score: 102.449 bits (254), Expect = 4.659e-25 Identity = 59/179 (32.96%), Postives = 96/179 (53.63%), Query Frame = 1 Query: 1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELP---YSGGVWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPE---RSYKLPSAATKPPHCNAAQSLIWYPKE 519 G G S E L+ G + I+DSDG YP+Y + ++ I T R T+L + + D F PSV W +P S L+ I R Q+F W+VA+ + +E+ +L+ +RW +L +++DP PLG+R + + E ++ +PE ++ +P A P+ N AQ LIW P++ Sbjct: 83 GEEGISSWELPELRDGHIQAISDSDGVNYPWYGCTTEMYTIVGPTKRSTTLTVSMNDNFSPSVTWSVPTGTTSSPPLLSSIQRDQRFTTWLVAMNE-----ATAEMVLLRTVRWRMQLAIEVDPEKPLGQRARLL-----EPLLQEQPEILAKNEPIPPNALVKPNANDAQVLIWRPRK 251
BLAST of Tetratricopeptide helical vs. Ensembl Cavefish
Match: fam78ab (family with sequence similarity 78 member A [Source:NCBI gene;Acc:103042528]) HSP 1 Score: 98.9821 bits (245), Expect = 9.750e-24 Identity = 61/190 (32.11%), Postives = 95/190 (50.00%), Query Frame = 1 Query: 1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPY--SGGVWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPE---RSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555 G G S E L+ G + I+DSDG YP+Y + I T + T + + D F+PSV W +P S L+ I R Q F W+VA+ ++ E VL+ +RW +L++++DP PLG+R K E I +P+ ++ +P A P+ N AQ L+W P+ +++PPK Sbjct: 85 GAKGMSSWELPDLRDGKIRAISDSDGVNYPWYGNTTETCTIVGPTKKDTKFIVSMNDNFYPSVTWGVPVSDSNAPVLSSIRRDQSFTTWLVAINQ-----ASGETLVLQTVRWRMRLHIEVDPEKPLGKRAKLC-----EPIAQEQPQVLGKNEPIPPNAMVKPNANDAQVLMWRPRTGEPV--VVIPPK 262
BLAST of Tetratricopeptide helical vs. Ensembl Cavefish
Match: fam78ba (family with sequence similarity 78 member Ba [Source:ZFIN;Acc:ZDB-GENE-140227-3]) HSP 1 Score: 95.5153 bits (236), Expect = 2.644e-22 Identity = 58/171 (33.92%), Postives = 83/171 (48.54%), Query Frame = 1 Query: 10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPY--SGGVWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDEN---IITMEPERSYKLPSAATKPPHCNAAQSLIW 507 G S E L+ G K I+DSDG YP+Y + I T + + L + + D F+PSV W +P S LT I R Q F+ W+VA+ + + E VL+ +RW ++ + +DP MPLG R V E + EP +P A P+ N AQ L+W Sbjct: 106 GMSSWELPELREGRVKAISDSDGVSYPWYGNTTETVTISGPTSKPSRLTVSMNDNFYPSVTWAVPVSNSNAPMLTRITRDQSFITWLVALNNATK-----ERIVLQTVRWRMRVDIAVDPSMPLGSRASLVGRAHQEQPHILANNEP-----IPPNALGRPNANDAQVLMW 266
BLAST of Tetratricopeptide helical vs. Ensembl Cavefish
Match: fam78bb (protein FAM78B-like [Source:NCBI gene;Acc:103022651]) HSP 1 Score: 92.4337 bits (228), Expect = 2.444e-21 Identity = 60/191 (31.41%), Postives = 94/191 (49.21%), Query Frame = 1 Query: 1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTV---SDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPKQ 558 G G S E L+ G+ + I+DSDG YP+Y + + + + + + D F+PSV W +P S LT I R Q F W+VA+ R E +L+ ++W ++ + +DP MPLG R + V + Q + + MEP +P A P+ N AQ L+W PK + N ++V P + Sbjct: 84 GEIGMSSWEIPELRDGVVRAISDSDGVSYPWYGNTTETVTLSGPMAKPSRCIVSMNDNFYPSVTWAVPVSESNVPRLTHITRDQSFTTWLVALNAATR-----EKILLQTVKWRMRVEIAVDPTMPLGSRARLVGPPNQDQPKVLTHMEP-----IPPNAMGKPNANDAQVLMWRPK---RGNPLIVIPSK 261
BLAST of Tetratricopeptide helical vs. Ensembl Sea Lamprey
Match: fam78bb (family with sequence similarity 78 member Bb [Source:ZFIN;Acc:ZDB-GENE-030131-7811]) HSP 1 Score: 96.2857 bits (238), Expect = 3.625e-24 Identity = 58/197 (29.44%), Postives = 94/197 (47.72%), Query Frame = 1 Query: 16 SFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPY-----------SGGV-----WLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPKQ 558 S E L+ G I+DSDG YP+Y + ++ + +H+ + D F+PSV W +P G WL+ + R Q F W+VA+ R E VL+ +RW +L + ++P+ PLG+R + V + E + + R+ +P+ A + P N AQ L+W PK +++PPKQ Sbjct: 2 SSWELPALRDGHVSAISDSDGVSYPWYGNTTETASMSASPRKPIRVHISMNDNFYPSVTWAVPVHGGGSGGGGGGDAGTAPPTPWLSRVTRDQTFTTWLVALNPDTR-----ERLVLRTVRWRVRLRIDVEPWRPLGQRARLVGPARQEQPLIL--PRNEPIPTNALERPSANDAQVLMWRPK--CGPCVVVIPPKQ 189
BLAST of Tetratricopeptide helical vs. Ensembl Medaka
Match: fam78bb (protein FAM78B [Source:NCBI gene;Acc:101168936]) HSP 1 Score: 96.2857 bits (238), Expect = 1.806e-22 Identity = 62/190 (32.63%), Postives = 92/190 (48.42%), Query Frame = 1 Query: 1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPY--SGGVWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDC---QDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555 G G S E L+ GL + I+DSDG YP+Y + I T + + + + D F+PSV W +P S LT+I R Q F W+VA+ R E +L ++W ++ + +DP PLG R + V Q + MEP +PS A P+ N AQ L+W P+ +++PPK Sbjct: 116 GDIGMSSWELPQLREGLVRAISDSDGVSYPWYGNTTETVTIVGPTSKPSRFTVSMNDNFYPSVTWAVPVSESNTPLLTNIKRDQSFTTWLVALNTTSR-----EKILLHTIKWRMRVDVMVDPSQPLGSRARLVGRLYQDQPRVLARMEP-----VPSNAMGKPNANDAQVLMWRPRRGPPI--VVIPPK 293
BLAST of Tetratricopeptide helical vs. Ensembl Medaka
Match: fam78ba (protein FAM78B-like [Source:NCBI gene;Acc:101155797]) HSP 1 Score: 95.9005 bits (237), Expect = 2.261e-22 Identity = 59/178 (33.15%), Postives = 86/178 (48.31%), Query Frame = 1 Query: 1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHK 528 G G S E L+ G K I+DSDG YP+Y + + T + + L + + D F+PSV W +P S LT I R Q F+ W+VA+ S E VL+ +RW ++ + +DP MPLG R V E + + +P A P+ N AQ L+W P+ H+ Sbjct: 106 GDIGMSSWELPELREGRVKAISDSDGVSYPWYGNTTETVTLTGPTSKPSRLTVSMNDNFYPSVTWAVPISNSNTPMLTHITRDQSFITWLVAMN-----SVTKERIVLQTVRWRMRVDIAVDPDMPLGSRASLVGRPYQEQPHILNYQE--PIPPNALGRPNANDAQVLMWRPRRGHR 276
BLAST of Tetratricopeptide helical vs. Ensembl Medaka
Match: fam78ba (protein FAM78B-like [Source:NCBI gene;Acc:101155797]) HSP 1 Score: 94.7449 bits (234), Expect = 4.587e-22 Identity = 61/187 (32.62%), Postives = 90/187 (48.13%), Query Frame = 1 Query: 1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555 G G S E L+ G K I+DSDG YP+Y + + T + + L + + D F+PSV W +P S LT I R Q F+ W+VA+ S E VL+ +RW ++ + +DP MPLG R V E + + +P A P+ N AQ L+W P+ +++PPK Sbjct: 104 GDIGMSSWELPELREGRVKAISDSDGVSYPWYGNTTETVTLTGPTSKPSRLTVSMNDNFYPSVTWAVPISNSNTPMLTHITRDQSFITWLVAMN-----SVTKERIVLQTVRWRMRVDIAVDPDMPLGSRASLVGRPYQEQPHILNYQE--PIPPNALGRPNANDAQVLMWRPRRGAPL--VVIPPK 281
BLAST of Tetratricopeptide helical vs. Ensembl Medaka
Match: fam78ab (protein FAM78A [Source:NCBI gene;Acc:101155701]) HSP 1 Score: 92.0485 bits (227), Expect = 1.001e-20 Identity = 61/190 (32.11%), Postives = 95/190 (50.00%), Query Frame = 1 Query: 1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERV---KTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555 G G S E L+ G + I+DSDG YP+Y + + T + + + + D F+PSV W +P S L+ I+R Q F W+VA+ + SE VL+ +RW +L++ +DP PLG R + V+ Q + + EP +P A P+ N AQ L+W PK + +++PPK Sbjct: 147 GDKGMSSWELPDLRDGKIQAISDSDGVNYPWYGNTTETCIVVGPTKKDSKFTVSMNDNFYPSVTWGVPVSDSNVPQLSSIHRDQSFTTWLVAINQ-----ATSETLVLQTIRWRMRLHIHVDPEKPLGLRANLKEPVAQEQPQILGKNEP-----IPPNAMVKPNANDAQVLMWRPK--NGDPVVVIPPK 324
BLAST of Tetratricopeptide helical vs. Planmine SMEST
Match: SMESG000065563.1 (SMESG000065563.1) HSP 1 Score: 442.965 bits (1138), Expect = 2.546e-157 Identity = 214/216 (99.07%), Postives = 214/216 (99.07%), Query Frame = 1 Query: 10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGGVWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPKQIIVPWDKWVSDMLGSKVRIRKPSEVIEMNINQV 657 GSS EFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGGVWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPKQIIVPWDKWVSDMLGSKVRIRKPSEVIEMNINQV Sbjct: 79 GSSLWEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGGVWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPKQIIVPWDKWVSDMLGSKVRIRKPSEVIEMNINQV 294
BLAST of Tetratricopeptide helical vs. Planmine SMEST
Match: SMESG000062370.1 (SMESG000062370.1) HSP 1 Score: 317.775 bits (813), Expect = 3.962e-109 Identity = 147/211 (69.67%), Postives = 175/211 (82.94%), Query Frame = 1 Query: 10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGGVWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPKQIIVPWDKWVSDMLGSKVRIRKPSEVIEM 642 G S EFHPLKSGLRKMINDSDG+QYPFYS + SL+ IKKG V+K ++ LQIKDYFHPSVVWELPYSGGV LT+INR QKFLIW+VA+KHGK+ + E+++LKK+RW Y L + +DPFMPLGERV+ + D QD NII ++PE++ +LPS+A PPHCNAAQSLIWYPK+ KH RILVPPKQIIV WD WV DMLG K R+RKPSEVI + Sbjct: 11 GKSLWEFHPLKSGLRKMINDSDGRQYPFYSINQSLYTIKKGPVKKATITLQIKDYFHPSVVWELPYSGGVHLTEINRHQKFLIWLVAIKHGKKGVAKEELTILKKIRWVYDLLITVDPFMPLGERVRRIYDVQDNNIIIIDPEKTSRLPSSAASPPHCNAAQSLIWYPKDPLKHARILVPPKQIIVSWDNWVRDMLGHKARVRKPSEVIHI 221
BLAST of Tetratricopeptide helical vs. Planmine SMEST
Match: SMESG000062370.1 (SMESG000062370.1) HSP 1 Score: 318.931 bits (816), Expect = 9.674e-109 Identity = 147/212 (69.34%), Postives = 175/212 (82.55%), Query Frame = 1 Query: 10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGGVWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPKQIIVPWDKWVSDMLGSKVRIRKPSEVIEMN 645 G S EFHPLKSGLRKMINDSDG+QYPFYS + SL+ IKKG V+K ++ LQIKDYFHPSVVWELPYSGGV LT+INR QKFLIW+VA+KHGK+ + E+++LKK+RW Y L + +DPFMPLGERV+ + D QD NII ++PE++ +LPS+A PPHCNAAQSLIWYPK+ KH RILVPPKQIIV WD WV DMLG K R+RKPSEVI + Sbjct: 64 GKSLWEFHPLKSGLRKMINDSDGRQYPFYSINQSLYTIKKGPVKKATITLQIKDYFHPSVVWELPYSGGVHLTEINRHQKFLIWLVAIKHGKKGVAKEELTILKKIRWVYDLLITVDPFMPLGERVRRIYDVQDNNIIIIDPEKTSRLPSSAASPPHCNAAQSLIWYPKDPLKHARILVPPKQIIVSWDNWVRDMLGHKARVRKPSEVIHIQ 275
BLAST of Tetratricopeptide helical vs. Planmine SMEST
Match: SMESG000004581.1 (SMESG000004581.1) HSP 1 Score: 224.942 bits (572), Expect = 2.961e-71 Identity = 108/222 (48.65%), Postives = 150/222 (67.57%), Query Frame = 1 Query: 1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGGVWLTDINRKQKFLIWVVAVKHGKRCSSAS---------EVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPKQIIVPWDKWVSDMLGS-KVRIRKPSEVI 636 GCNGSSF EFHPLKSG M+NDSDG+QYPFYS + S + I+KG V ++++ L +D+F+P+V WELPY+GGV LTD+ RKQ F +W+VA++ G + +S + LK +RW Y L+MK DP P+G RV+ + D Q+E + ++ R K+P +A PPHCNAAQSLIWY K + +ILVPPKQ +VPW+ W+ DM K++ KP + + Sbjct: 75 GCNGSSFWEFHPLKSGRHIMVNDSDGRQYPFYSLTSSKYEIEKGRVLESAVTLHYEDHFYPTVAWELPYNGGVRLTDVIRKQDFWVWLVAIQRGSNNAGSSYDLFDPREDSIFTLKTMRWRYNLHMKFDPEKPVGNRVQCIHDIQNEAPVVLDYNR--KIPISALSPPHCNAAQSLIWYSKNSLDKPKILVPPKQTVVPWENWLGDMSSDRKMKATKPKDCM 294
BLAST of Tetratricopeptide helical vs. Planmine SMEST
Match: SMESG000001027.1 (SMESG000001027.1) HSP 1 Score: 214.927 bits (546), Expect = 1.446e-67 Identity = 104/219 (47.49%), Postives = 148/219 (67.58%), Query Frame = 1 Query: 1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGGVWLTDINRKQKFLIWVVAVKHGKRCSSA--------SEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPKQIIVPWDKWVSDM-LGSKVRIRKPSE 630 G GSS+ EFHPLKSG M+NDSDG+QYPFYS + S +KKG V ++ + L +D+F+P+V WELPY GG LTD+ RKQ F +W+V ++ GK+ + V VL+ +RW Y L+M DP P+G+R+K + D Q+E +E + LP +A PPHCNAAQSLIWYP++ ++ +ILVPPKQIIVPW+ W++DM +++++KP + Sbjct: 75 GDIGSSYWEFHPLKSGRHTMVNDSDGRQYPFYSLTSSKFELKKGLVHESIVSLHYEDHFYPTVAWELPYCGGTKLTDVIRKQDFWVWLVVIRRGKKKNEELSLFDPRYDHVHVLRTMRWRYNLHMIFDPNKPIGQRLKKLYDVQEETPYVLETCKP--LPLSALSPPHCNAAQSLIWYPRDLNEKLKILVPPKQIIVPWESWLTDMGQNRRLKVQKPKD 291 The following BLAST results are available for this feature:
BLAST of Tetratricopeptide helical vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of Tetratricopeptide helical vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Tetratricopeptide helical vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Tetratricopeptide helical vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 4
BLAST of Tetratricopeptide helical vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 3
BLAST of Tetratricopeptide helical vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of Tetratricopeptide helical vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 4
BLAST of Tetratricopeptide helical vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Tetratricopeptide helical vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 4
BLAST of Tetratricopeptide helical vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of Tetratricopeptide helical vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Tetratricopeptide helical vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of Tetratricopeptide helical vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 4
BLAST of Tetratricopeptide helical vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30006111 ID=SMED30006111|Name=Tetratricopeptide helical|organism=Schmidtea mediterranea sexual|type=transcript|length=1026bpback to top protein sequence of SMED30006111-orf-1 >SMED30006111-orf-1 ID=SMED30006111-orf-1|Name=SMED30006111-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=220bp GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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