Tetratricopeptide helical

Overview
NameTetratricopeptide helical
Smed IDSMED30006111
Length (bp)1026
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Tetratricopeptide helical (SMED30006111) t-SNE clustered cells

Violin plots show distribution of expression levels for Tetratricopeptide helical (SMED30006111) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Tetratricopeptide helical (SMED30006111) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Tetratricopeptide helical (SMED30006111) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30006111

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 3

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
testisSMED30006111SMESG000065563.1 PL06012A2A09_SE3GPL10652PMID:20844018
Wang et al., 2010		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
early male germ cellSMED30006111SMESG000065563.1 PL06012A2A09_SE3GPL10652PMID:20844018
Wang et al., 2010		whole organism asexual adult cDNA to DNA expression microarray evidence
testis primordiumSMED30006111SMESG000065563.1 PL06012A2A09_SE3GPL10652PMID:20844018
Wang et al., 2010		whole organism juvenile cDNA to DNA expression microarray evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Tetratricopeptide helical vs. Ensembl Human
Match: FAM78A (family with sequence similarity 78 member A [Source:HGNC Symbol;Acc:HGNC:25465])

HSP 1 Score: 94.3597 bits (233), Expect = 1.309e-21
Identity = 61/188 (32.45%), Postives = 96/188 (51.06%), Query Frame = 1 
Query:    1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSD-CQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555
            G  G S  E   L+ G  + I+DSDG  YP+Y  +     I   T R +   + + D F+PSV W +P S      LT+I R Q F  W+VA       +S +++ +L+ L W  +L ++++P  PLG+R +      QD+  I  + E    +P +A   P+ N AQ L+W PK  +    +++PPK
Sbjct:  104 GEQGMSSWELPDLQEGKIQAISDSDGVNYPWYGNTTETCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTWLVATN-----TSTNDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNE---PIPPSALVKPNANDAQVLMWRPK--YGQPLVVIPPK 281
[Close]
BLAST of Tetratricopeptide helical vs. Ensembl Human
Match: FAM78B (family with sequence similarity 78 member B [Source:HGNC Symbol;Acc:HGNC:13495])

HSP 1 Score: 93.5893 bits (231), Expect = 1.331e-21
Identity = 59/187 (31.55%), Postives = 92/187 (49.20%), Query Frame = 1 
Query:   10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDEN---IITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555
            G S  E   L+ G  K I+DSDG  YP+Y  +     +   T + +   + + D F+PSV W +P S      LT I R Q F  W+VA+      ++  E  +L+ ++W  ++ +++DP   LG+R + V   Q E    +  MEP     +P  A   P+ N AQ L+W PK       +++PPK
Sbjct:   80 GMSSWELPDLREGRVKAISDSDGVSYPWYGNTTETVTLVGPTNKISRFSVSMNDNFYPSVTWAVPVSDSNVPLLTRIKRDQSFTTWLVAMN-----TTTKEKIILQTIKWRMRVDIEVDPLQLLGQRARLVGRTQQEQPRILSRMEP-----IPPNALVKPNANDAQVLMWRPKRGPPL--VVIPPK 254
[Close]
BLAST of Tetratricopeptide helical vs. Ensembl Human
Match: FAM78B (family with sequence similarity 78 member B [Source:HGNC Symbol;Acc:HGNC:13495])

HSP 1 Score: 93.5893 bits (231), Expect = 1.481e-21
Identity = 59/187 (31.55%), Postives = 92/187 (49.20%), Query Frame = 1 
Query:   10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDEN---IITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555
            G S  E   L+ G  K I+DSDG  YP+Y  +     +   T + +   + + D F+PSV W +P S      LT I R Q F  W+VA+      ++  E  +L+ ++W  ++ +++DP   LG+R + V   Q E    +  MEP     +P  A   P+ N AQ L+W PK       +++PPK
Sbjct:   83 GMSSWELPDLREGRVKAISDSDGVSYPWYGNTTETVTLVGPTNKISRFSVSMNDNFYPSVTWAVPVSDSNVPLLTRIKRDQSFTTWLVAMN-----TTTKEKIILQTIKWRMRVDIEVDPLQLLGQRARLVGRTQQEQPRILSRMEP-----IPPNALVKPNANDAQVLMWRPKRGPPL--VVIPPK 257
[Close]
BLAST of Tetratricopeptide helical vs. Ensembl Human
Match: FAM78B (family with sequence similarity 78 member B [Source:HGNC Symbol;Acc:HGNC:13495])

HSP 1 Score: 93.5893 bits (231), Expect = 1.562e-21
Identity = 59/187 (31.55%), Postives = 92/187 (49.20%), Query Frame = 1 
Query:   10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDEN---IITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555
            G S  E   L+ G  K I+DSDG  YP+Y  +     +   T + +   + + D F+PSV W +P S      LT I R Q F  W+VA+      ++  E  +L+ ++W  ++ +++DP   LG+R + V   Q E    +  MEP     +P  A   P+ N AQ L+W PK       +++PPK
Sbjct:   87 GMSSWELPDLREGRVKAISDSDGVSYPWYGNTTETVTLVGPTNKISRFSVSMNDNFYPSVTWAVPVSDSNVPLLTRIKRDQSFTTWLVAMN-----TTTKEKIILQTIKWRMRVDIEVDPLQLLGQRARLVGRTQQEQPRILSRMEP-----IPPNALVKPNANDAQVLMWRPKRGPPL--VVIPPK 261
[Close]
BLAST of Tetratricopeptide helical vs. Ensembl Human
Match: FAM78B (family with sequence similarity 78 member B [Source:HGNC Symbol;Acc:HGNC:13495])

HSP 1 Score: 93.5893 bits (231), Expect = 1.562e-21
Identity = 59/187 (31.55%), Postives = 92/187 (49.20%), Query Frame = 1 
Query:   10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDEN---IITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555
            G S  E   L+ G  K I+DSDG  YP+Y  +     +   T + +   + + D F+PSV W +P S      LT I R Q F  W+VA+      ++  E  +L+ ++W  ++ +++DP   LG+R + V   Q E    +  MEP     +P  A   P+ N AQ L+W PK       +++PPK
Sbjct:   87 GMSSWELPDLREGRVKAISDSDGVSYPWYGNTTETVTLVGPTNKISRFSVSMNDNFYPSVTWAVPVSDSNVPLLTRIKRDQSFTTWLVAMN-----TTTKEKIILQTIKWRMRVDIEVDPLQLLGQRARLVGRTQQEQPRILSRMEP-----IPPNALVKPNANDAQVLMWRPKRGPPL--VVIPPK 261
[Close]
BLAST of Tetratricopeptide helical vs. Ensembl Zebrafish
Match: fam78aa (family with sequence similarity 78 member Aa [Source:ZFIN;Acc:ZDB-GENE-061027-351])

HSP 1 Score: 99.3673 bits (246), Expect = 8.073e-24
Identity = 60/191 (31.41%), Postives = 99/191 (51.83%), Query Frame = 1 
Query:    1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPY---SGGVWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPE---RSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555
            G  G S  E   L+ G  + I+DSDG  YP+Y  +  ++ I   T + T L + + D F PSV W +P    S    L+ I R Q+F  W+VA+       + +E+ +L+ +RW  ++ +K+DP  PLG+R   V     E ++  +P+    +  +P  A   P+ N AQ L+W P+  +    +++PPK
Sbjct:   83 GNEGVSSWELPELRCGQIQAISDSDGVNYPWYGCTTEMYTIVGPTKKSTKLTVSMNDNFCPSVTWSVPVGTTSSPPLLSAIQRDQRFTTWLVAMNE-----TTAEMVLLRTIRWRMQICVKVDPKRPLGQRATVV-----EPLVQEQPQVQTHNEPIPINALVKPNANDAQVLMWRPR--NGEPIMVIPPK 261
[Close]
BLAST of Tetratricopeptide helical vs. Ensembl Zebrafish
Match: fam78ba (family with sequence similarity 78 member Ba [Source:ZFIN;Acc:ZDB-GENE-140227-3])

HSP 1 Score: 97.8265 bits (242), Expect = 4.828e-23
Identity = 60/187 (32.09%), Postives = 92/187 (49.20%), Query Frame = 1 
Query:    1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555
            G  G S  E   L+ G  K I+DSDG  YP+Y  +     +   T + + L + + D F+PSV W +P S      LT I R Q F+ W+VA+      +   E  VL+ +RW  ++ +++DP MPLG R K +     E    +    +  +P  A   P+ N AQ L+W P+       +++PPK
Sbjct:  108 GDIGMSSWELPELREGRVKAISDSDGVSYPWYGNTTETVTLSGPTSKPSRLTVSMNDNFYPSVTWAVPISNSNTPMLTHITRDQSFITWLVALN-----ADTKERIVLQTVRWRMRVDIEVDPSMPLGSRAKLMGRPHQEQPHIL--SNNEPIPPNALGRPNANDAQVLMWRPRRGQPL--VVIPPK 285
[Close]
BLAST of Tetratricopeptide helical vs. Ensembl Zebrafish
Match: fam78ab (family with sequence similarity 78 member Ab [Source:ZFIN;Acc:ZDB-GENE-080220-25])

HSP 1 Score: 96.6709 bits (239), Expect = 7.655e-23
Identity = 60/187 (32.09%), Postives = 91/187 (48.66%), Query Frame = 1 
Query:    1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGGV--WLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555
            G  G S  E   L+ G  + I+DSDG  YP+Y  +     I   T + T   + + D F+PSV W +P S      L+ I R Q F  W+VA+       S  EV VL+ +RW  +L++ +DP  PLG+R         E    +   ++  +P+ A   P+ N AQ L+W P+       +++PPK
Sbjct:   84 GSKGMSSWELPDLRDGKIQAISDSDGVNYPWYGNTTETCTITGPTKKDTRFTVSMNDNFYPSVTWGVPVSDSSVPQLSSIWRDQSFSTWLVAISQ-----STGEVLVLQTVRWRMRLHIAVDPEKPLGQRAALCEPTAQEPPQIL--GKNEAIPANALVKPNANDAQVLMWRPRVGEPV--VVIPPK 261
[Close]
BLAST of Tetratricopeptide helical vs. Ensembl Zebrafish
Match: fam78bb (family with sequence similarity 78 member Bb [Source:ZFIN;Acc:ZDB-GENE-030131-7811])

HSP 1 Score: 88.1965 bits (217), Expect = 8.735e-20
Identity = 56/175 (32.00%), Postives = 85/175 (48.57%), Query Frame = 1 
Query:    1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDC-QDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPK 516
            G  G S  E   L+ GL K I+DSDG  YP+Y  +     +   T + +   + + D F+PSV W +P S      LT I R Q F  W+VA+       +  E  +L+ ++W  K+ + +DP  PL  R + +    QD+  +    E   ++P  A   P+ N AQ L+W PK
Sbjct:   84 GDLGMSSWELPELREGLVKAISDSDGLSYPWYGNTTETVTLSGPTSKPSRFTVSMNDNFYPSVTWAVPVSESNVPLLTRIKRDQSFTTWLVALN-----VTTQEKILLQTVKWRMKVDIAVDPSKPLSSRARLIGRVHQDQPKVLTHME---QIPPNALGKPNANDAQVLMWRPK 250
[Close]
BLAST of Tetratricopeptide helical vs. Ensembl Xenopus
Match: fam78a (family with sequence similarity 78 member A [Source:NCBI gene;Acc:100145734])

HSP 1 Score: 98.2117 bits (243), Expect = 7.980e-23
Identity = 57/188 (30.32%), Postives = 98/188 (52.13%), Query Frame = 1 
Query:    1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGGVW--LTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPKQ 558
            G  G S  E   L+SG    I+DSDG  YP+Y  +     +   T R++   + + D F+PSV W +P + G    LT I+R Q F  W+VA        + +++ +L  ++W  +L ++++P +PLG+R K       E    +   ++  LP +A   P+ N AQ L+W PK+  +   +++PP++
Sbjct:  138 GDLGKSSWELPDLESGKITAISDSDGVNYPWYGNTTETCTVTGPTKRESKFTVSMNDNFYPSVTWAVPVNDGNVPKLTGIHRDQSFTTWLVATNM-----NTNDIIILHTIKWRMRLEIEVNPNLPLGQRAKLKEPFGQEQPQVL--TKNEPLPPSALVKPNANDAQVLMWRPKK--RQGEVVIPPRR 316
[Close]
BLAST of Tetratricopeptide helical vs. Ensembl Xenopus
Match: stard4 (StAR related lipid transfer domain containing 4 [Source:Xenbase;Acc:XB-GENE-5944117])

HSP 1 Score: 93.5893 bits (231), Expect = 1.560e-21
Identity = 60/188 (31.91%), Postives = 93/188 (49.47%), Query Frame = 1 
Query:   10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDEN---IITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPKQ 558
            G S  E   L+ G  K I+DSDG  YP+Y  +     +   T + +   + + D F+PSV W +P S      LT I R Q F  W+VA+      ++  E  +L+ ++W  ++ +++DP   LG+R + V   Q E    +  MEP     +P  A   P+ N AQ L+W PK       I++PPK+
Sbjct:   87 GMSSWELPDLREGRVKAISDSDGVSYPWYGNTTETVTLMGPTNKISRFSVSMNDNFYPSVTWAVPISESNVPLLTRIKRDQSFTTWLVAMN-----TTTKEKIILQTIKWRMRVDIEVDPNQMLGKRARLVGRTQQEQPRILSRMEP-----IPPNALVKPNANDAQVLMWRPKRGQPV--IVIPPKK 262
[Close]
BLAST of Tetratricopeptide helical vs. Ensembl Xenopus
Match: fam78a (family with sequence similarity 78 member A [Source:NCBI gene;Acc:100145734])

HSP 1 Score: 80.4925 bits (197), Expect = 1.148e-16
Identity = 43/132 (32.58%), Postives = 71/132 (53.79%), Query Frame = 1 
Query:    1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGGVW--LTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVK 390
            G  G S  E   L+SG    I+DSDG  YP+Y  +     +   T R++   + + D F+PSV W +P + G    LT I+R Q F  W+VA        + +++ +L  ++W  +L ++++P +PLG+R K
Sbjct:  138 GDLGKSSWELPDLESGKITAISDSDGVNYPWYGNTTETCTVTGPTKRESKFTVSMNDNFYPSVTWAVPVNDGNVPKLTGIHRDQSFTTWLVATNM-----NTNDIIILHTIKWRMRLEIEVNPNLPLGQRAK 264
[Close]
BLAST of Tetratricopeptide helical vs. Ensembl Mouse
Match: Fam78b (family with sequence similarity 78, member B [Source:MGI Symbol;Acc:MGI:2443050])

HSP 1 Score: 93.5893 bits (231), Expect = 9.138e-22
Identity = 59/187 (31.55%), Postives = 92/187 (49.20%), Query Frame = 1 
Query:   10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDEN---IITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555
            G S  E   L+ G  K I+DSDG  YP+Y  +     +   T + +   + + D F+PSV W +P S      LT I R Q F  W+VA+      ++  E  +L+ ++W  ++ +++DP   LG+R + V   Q E    +  MEP     +P  A   P+ N AQ L+W PK       +++PPK
Sbjct:   80 GMSSWELPDLREGRVKAISDSDGVSYPWYGNTTETVTLVGPTNKISRFSVSMNDNFYPSVTWAVPVSDSNVPLLTRIKRDQSFTTWLVAMN-----TTTKEKIILQTIKWRMRVDIEVDPLQLLGQRARLVGRTQQEQPRILSRMEP-----IPPNALVKPNANDAQVLMWRPKRGPPL--VVIPPK 254
[Close]
BLAST of Tetratricopeptide helical vs. Ensembl Mouse
Match: Fam78a (family with sequence similarity 78, member A [Source:MGI Symbol;Acc:MGI:2443569])

HSP 1 Score: 94.3597 bits (233), Expect = 9.354e-22
Identity = 61/188 (32.45%), Postives = 96/188 (51.06%), Query Frame = 1 
Query:    1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSD-CQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555
            G  G S  E   L+ G  + I+DSDG  YP+Y  +     I   T R +   + + D F+PSV W +P S      LT+I R Q F  W+VA       +S +++ +L+ L W  +L ++++P  PLG+R +      QD+  I  + E    +P +A   P+ N AQ L+W PK  +    +++PPK
Sbjct:  104 GEQGMSSWELPDLQEGKIEAISDSDGVNYPWYGNTTETCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTWLVATN-----TSTNDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNE---PIPPSALVKPNANDAQVLMWRPK--YGQPLVVIPPK 281
[Close]
BLAST of Tetratricopeptide helical vs. Ensembl Mouse
Match: Fam78a (family with sequence similarity 78, member A [Source:MGI Symbol;Acc:MGI:2443569])

HSP 1 Score: 94.3597 bits (233), Expect = 9.354e-22
Identity = 61/188 (32.45%), Postives = 96/188 (51.06%), Query Frame = 1 
Query:    1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSD-CQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555
            G  G S  E   L+ G  + I+DSDG  YP+Y  +     I   T R +   + + D F+PSV W +P S      LT+I R Q F  W+VA       +S +++ +L+ L W  +L ++++P  PLG+R +      QD+  I  + E    +P +A   P+ N AQ L+W PK  +    +++PPK
Sbjct:  104 GEQGMSSWELPDLQEGKIEAISDSDGVNYPWYGNTTETCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTWLVATN-----TSTNDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNE---PIPPSALVKPNANDAQVLMWRPK--YGQPLVVIPPK 281
[Close]
BLAST of Tetratricopeptide helical vs. Ensembl Mouse
Match: Fam78b (family with sequence similarity 78, member B [Source:MGI Symbol;Acc:MGI:2443050])

HSP 1 Score: 93.5893 bits (231), Expect = 1.017e-21
Identity = 59/187 (31.55%), Postives = 92/187 (49.20%), Query Frame = 1 
Query:   10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDEN---IITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555
            G S  E   L+ G  K I+DSDG  YP+Y  +     +   T + +   + + D F+PSV W +P S      LT I R Q F  W+VA+      ++  E  +L+ ++W  ++ +++DP   LG+R + V   Q E    +  MEP     +P  A   P+ N AQ L+W PK       +++PPK
Sbjct:   83 GMSSWELPDLREGRVKAISDSDGVSYPWYGNTTETVTLVGPTNKISRFSVSMNDNFYPSVTWAVPVSDSNVPLLTRIKRDQSFTTWLVAMN-----TTTKEKIILQTIKWRMRVDIEVDPLQLLGQRARLVGRTQQEQPRILSRMEP-----IPPNALVKPNANDAQVLMWRPKRGPPL--VVIPPK 257
[Close]
BLAST of Tetratricopeptide helical vs. Ensembl Mouse
Match: Fam78b (family with sequence similarity 78, member B [Source:MGI Symbol;Acc:MGI:2443050])

HSP 1 Score: 93.5893 bits (231), Expect = 1.073e-21
Identity = 59/187 (31.55%), Postives = 92/187 (49.20%), Query Frame = 1 
Query:   10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDEN---IITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555
            G S  E   L+ G  K I+DSDG  YP+Y  +     +   T + +   + + D F+PSV W +P S      LT I R Q F  W+VA+      ++  E  +L+ ++W  ++ +++DP   LG+R + V   Q E    +  MEP     +P  A   P+ N AQ L+W PK       +++PPK
Sbjct:   87 GMSSWELPDLREGRVKAISDSDGVSYPWYGNTTETVTLVGPTNKISRFSVSMNDNFYPSVTWAVPVSDSNVPLLTRIKRDQSFTTWLVAMN-----TTTKEKIILQTIKWRMRVDIEVDPLQLLGQRARLVGRTQQEQPRILSRMEP-----IPPNALVKPNANDAQVLMWRPKRGPPL--VVIPPK 261
[Close]
BLAST of Tetratricopeptide helical vs. UniProt/SwissProt
Match: sp|Q5JUQ0|FA78A_HUMAN (Protein FAM78A OS=Homo sapiens OX=9606 GN=FAM78A PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.286e-21
Identity = 61/188 (32.45%), Postives = 96/188 (51.06%), Query Frame = 1 
Query:    1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSD-CQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555
            G  G S  E   L+ G  + I+DSDG  YP+Y  +     I   T R +   + + D F+PSV W +P S      LT+I R Q F  W+VA       +S +++ +L+ L W  +L ++++P  PLG+R +      QD+  I  + E    +P +A   P+ N AQ L+W PK  +    +++PPK
Sbjct:  104 GEQGMSSWELPDLQEGKIQAISDSDGVNYPWYGNTTETCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTWLVATN-----TSTNDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNE---PIPPSALVKPNANDAQVLMWRPK--YGQPLVVIPPK 281
[Close]
BLAST of Tetratricopeptide helical vs. UniProt/SwissProt
Match: sp|Q8C552|FA78A_MOUSE (Protein FAM78A OS=Mus musculus OX=10090 GN=Fam78a PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.543e-21
Identity = 61/188 (32.45%), Postives = 96/188 (51.06%), Query Frame = 1 
Query:    1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSD-CQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555
            G  G S  E   L+ G  + I+DSDG  YP+Y  +     I   T R +   + + D F+PSV W +P S      LT+I R Q F  W+VA       +S +++ +L+ L W  +L ++++P  PLG+R +      QD+  I  + E    +P +A   P+ N AQ L+W PK  +    +++PPK
Sbjct:  104 GEQGMSSWELPDLQEGKIEAISDSDGVNYPWYGNTTETCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTWLVATN-----TSTNDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNE---PIPPSALVKPNANDAQVLMWRPK--YGQPLVVIPPK 281
[Close]
BLAST of Tetratricopeptide helical vs. UniProt/SwissProt
Match: sp|Q8BQN5|FA78B_MOUSE (Protein FAM78B OS=Mus musculus OX=10090 GN=Fam78b PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 7.503e-21
Identity = 59/187 (31.55%), Postives = 92/187 (49.20%), Query Frame = 1 
Query:   10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDEN---IITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555
            G S  E   L+ G  K I+DSDG  YP+Y  +     +   T + +   + + D F+PSV W +P S      LT I R Q F  W+VA+      ++  E  +L+ ++W  ++ +++DP   LG+R + V   Q E    +  MEP     +P  A   P+ N AQ L+W PK       +++PPK
Sbjct:   87 GMSSWELPDLREGRVKAISDSDGVSYPWYGNTTETVTLVGPTNKISRFSVSMNDNFYPSVTWAVPVSDSNVPLLTRIKRDQSFTTWLVAMN-----TTTKEKIILQTIKWRMRVDIEVDPLQLLGQRARLVGRTQQEQPRILSRMEP-----IPPNALVKPNANDAQVLMWRPKRGPPL--VVIPPK 261
[Close]
BLAST of Tetratricopeptide helical vs. UniProt/SwissProt
Match: sp|Q5VT40|FA78B_HUMAN (Protein FAM78B OS=Homo sapiens OX=9606 GN=FAM78B PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.503e-21
Identity = 59/187 (31.55%), Postives = 92/187 (49.20%), Query Frame = 1 
Query:   10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDEN---IITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555
            G S  E   L+ G  K I+DSDG  YP+Y  +     +   T + +   + + D F+PSV W +P S      LT I R Q F  W+VA+      ++  E  +L+ ++W  ++ +++DP   LG+R + V   Q E    +  MEP     +P  A   P+ N AQ L+W PK       +++PPK
Sbjct:   87 GMSSWELPDLREGRVKAISDSDGVSYPWYGNTTETVTLVGPTNKISRFSVSMNDNFYPSVTWAVPVSDSNVPLLTRIKRDQSFTTWLVAMN-----TTTKEKIILQTIKWRMRVDIEVDPLQLLGQRARLVGRTQQEQPRILSRMEP-----IPPNALVKPNANDAQVLMWRPKRGPPL--VVIPPK 261
[Close]
BLAST of Tetratricopeptide helical vs. TrEMBL
Match: A0A183AFW2 (Uncharacterized protein OS=Echinostoma caproni OX=27848 GN=ECPE_LOCUS5847 PE=4 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 5.069e-111
Identity = 153/212 (72.17%), Postives = 182/212 (85.85%), Query Frame = 1 
Query:   10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGGVWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPKQIIVPWDKWVSDMLGSKVRIRKPSEVIEMN 645
            G S  EFHPLKSGLRK+INDSDG+QYPFYS + SL+NIKKG VRK +L+LQ+KDYFHPSVVWELPYSGGV LT+INR+QKFLIW+VA+K+GK+ S   E++VLKK+RWEY L+MK+DPFMPLG RV+ + D QD  II M+P++SYKLP AAT PPHCNAAQSLIWYPK+ HKH RILVPPKQIIVPW++WV DMLG   R+RKP+EV E+ 
Sbjct:   78 GKSLWEFHPLKSGLRKLINDSDGRQYPFYSVNQSLYNIKKGPVRKVTLNLQVKDYFHPSVVWELPYSGGVRLTEINRQQKFLIWLVAIKYGKKLSCKDEITVLKKIRWEYDLHMKVDPFMPLGSRVRKIFDVQDSGIIMMDPDKSYKLPIAATFPPHCNAAQSLIWYPKDPHKHARILVPPKQIIVPWEEWVHDMLGPNARVRKPNEVSEIG 289
[Close]
BLAST of Tetratricopeptide helical vs. TrEMBL
Match: A0A504Z1L3 (Tetratricopeptide helical OS=Fasciola gigantica OX=46835 GN=FGIG_03211 PE=4 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 5.238e-111
Identity = 153/212 (72.17%), Postives = 182/212 (85.85%), Query Frame = 1 
Query:   10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGGVWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPKQIIVPWDKWVSDMLGSKVRIRKPSEVIEMN 645
            G S  EFHPLKSGLRK+INDSDG+QYPFYS + SL+NIKKG VRK +L+LQ+KDYFHPSVVWELPYSGGV LT+INR+QKFLIW+VA+K+GK+ S   E++VLKK+RWEY L+MK+DPFMPLG RV+ + D QD  II M+P++SYKLP AAT PPHCNAAQSLIWYPK+ HKH RILVPPKQIIVPW++WV DMLG   R+RKP+EV E+ 
Sbjct:   78 GKSLWEFHPLKSGLRKLINDSDGRQYPFYSVNQSLYNIKKGPVRKVTLNLQVKDYFHPSVVWELPYSGGVRLTEINRQQKFLIWLVAIKYGKKLSYKDEITVLKKIRWEYDLHMKVDPFMPLGSRVRKIFDVQDSGIIMMDPDKSYKLPIAATFPPHCNAAQSLIWYPKDPHKHARILVPPKQIIVPWEEWVHDMLGPNARVRKPNEVSEIG 289
[Close]
BLAST of Tetratricopeptide helical vs. TrEMBL
Match: A0A4E0RUM5 (Tetratricopeptide helical OS=Fasciola hepatica OX=6192 GN=D915_003591 PE=4 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 5.238e-111
Identity = 153/212 (72.17%), Postives = 182/212 (85.85%), Query Frame = 1 
Query:   10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGGVWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPKQIIVPWDKWVSDMLGSKVRIRKPSEVIEMN 645
            G S  EFHPLKSGLRK+INDSDG+QYPFYS + SL+NIKKG VRK +L+LQ+KDYFHPSVVWELPYSGGV LT+INR+QKFLIW+VA+K+GK+ S   E++VLKK+RWEY L+MK+DPFMPLG RV+ + D QD  II M+P++SYKLP AAT PPHCNAAQSLIWYPK+ HKH RILVPPKQIIVPW++WV DMLG   R+RKP+EV E+ 
Sbjct:   78 GKSLWEFHPLKSGLRKLINDSDGRQYPFYSVNQSLYNIKKGPVRKVTLNLQVKDYFHPSVVWELPYSGGVRLTEINRQQKFLIWLVAIKYGKKLSYKDEITVLKKIRWEYDLHMKVDPFMPLGSRVRKIFDVQDSGIIMMDPDKSYKLPIAATFPPHCNAAQSLIWYPKDPHKHARILVPPKQIIVPWEEWVHDMLGPNARVRKPNEVSEIG 289
[Close]
BLAST of Tetratricopeptide helical vs. TrEMBL
Match: A0A4S2L769 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_009551 PE=4 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 7.341e-110
Identity = 150/212 (70.75%), Postives = 182/212 (85.85%), Query Frame = 1 
Query:   10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGGVWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPKQIIVPWDKWVSDMLGSKVRIRKPSEVIEMN 645
            G S  EFHPLKSGLRK+INDSDG+QYPFYS + SL+NIKKG VRK +L+LQ+KDYFHPSVVWELPYSGGV LT+INR+QKFLIW+VA+K+GK+ S   E++VLKK+RWEY L+MK+DPFMPLG RV+ + D QD  I+ M+P+++Y+LP AAT PPHCNAAQSLIWYPK+ HKH RILVPPKQIIVPW++WV DMLG   R+RKP+EV E+ 
Sbjct:   78 GKSLWEFHPLKSGLRKLINDSDGRQYPFYSVNQSLYNIKKGPVRKLTLNLQVKDYFHPSVVWELPYSGGVRLTEINRQQKFLIWLVAIKYGKKLSCKDEITVLKKIRWEYDLHMKVDPFMPLGSRVRKIYDVQDSAIMMMDPDKTYRLPIAATFPPHCNAAQSLIWYPKDPHKHARILVPPKQIIVPWEEWVHDMLGRNARVRKPNEVSEIG 289
[Close]
BLAST of Tetratricopeptide helical vs. TrEMBL
Match: H2KUH8 (Protein FAM78B OS=Clonorchis sinensis OX=79923 GN=Fam78b PE=4 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 1.099e-109
Identity = 150/212 (70.75%), Postives = 182/212 (85.85%), Query Frame = 1 
Query:   10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGGVWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPKQIIVPWDKWVSDMLGSKVRIRKPSEVIEMN 645
            G S  EFHPLKSGLRK+INDSDG+QYPFYS + SL+NIKKG VRK +L+LQ+KDYFHPSVVWELPYSGGV LT+INR+QKFLIW+VA+K+GK+ S   E++VLKK+RWEY L+MK+DPFMPLG RV+ + D QD  I+ M+P+++Y+LP AAT PPHCNAAQSLIWYPK+ HKH RILVPPKQIIVPW++WV DMLG   R+RKP+EV E+ 
Sbjct:   78 GKSLWEFHPLKSGLRKLINDSDGRQYPFYSVNQSLYNIKKGPVRKLTLNLQVKDYFHPSVVWELPYSGGVRLTEINRQQKFLIWLVAIKYGKKLSCKDEITVLKKIRWEYDLHMKVDPFMPLGSRVRKIYDVQDSAIMMMDPDKTYRLPIAATFPPHCNAAQSLIWYPKDPHKHARILVPPKQIIVPWEEWVHDMLGRNARVRKPNEVSEIG 289
[Close]
BLAST of Tetratricopeptide helical vs. Ensembl Cavefish
Match: fam78aa (protein FAM78A-like [Source:NCBI gene;Acc:103022336])

HSP 1 Score: 102.449 bits (254), Expect = 4.659e-25
Identity = 59/179 (32.96%), Postives = 96/179 (53.63%), Query Frame = 1 
Query:    1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELP---YSGGVWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPE---RSYKLPSAATKPPHCNAAQSLIWYPKE 519
            G  G S  E   L+ G  + I+DSDG  YP+Y  +  ++ I   T R T+L + + D F PSV W +P    S    L+ I R Q+F  W+VA+       + +E+ +L+ +RW  +L +++DP  PLG+R + +     E ++  +PE   ++  +P  A   P+ N AQ LIW P++
Sbjct:   83 GEEGISSWELPELRDGHIQAISDSDGVNYPWYGCTTEMYTIVGPTKRSTTLTVSMNDNFSPSVTWSVPTGTTSSPPLLSSIQRDQRFTTWLVAMNE-----ATAEMVLLRTVRWRMQLAIEVDPEKPLGQRARLL-----EPLLQEQPEILAKNEPIPPNALVKPNANDAQVLIWRPRK 251
[Close]
BLAST of Tetratricopeptide helical vs. Ensembl Cavefish
Match: fam78ab (family with sequence similarity 78 member A [Source:NCBI gene;Acc:103042528])

HSP 1 Score: 98.9821 bits (245), Expect = 9.750e-24
Identity = 61/190 (32.11%), Postives = 95/190 (50.00%), Query Frame = 1 
Query:    1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPY--SGGVWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPE---RSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555
            G  G S  E   L+ G  + I+DSDG  YP+Y  +     I   T + T   + + D F+PSV W +P   S    L+ I R Q F  W+VA+       ++ E  VL+ +RW  +L++++DP  PLG+R K       E I   +P+   ++  +P  A   P+ N AQ L+W P+       +++PPK
Sbjct:   85 GAKGMSSWELPDLRDGKIRAISDSDGVNYPWYGNTTETCTIVGPTKKDTKFIVSMNDNFYPSVTWGVPVSDSNAPVLSSIRRDQSFTTWLVAINQ-----ASGETLVLQTVRWRMRLHIEVDPEKPLGKRAKLC-----EPIAQEQPQVLGKNEPIPPNAMVKPNANDAQVLMWRPRTGEPV--VVIPPK 262
[Close]
BLAST of Tetratricopeptide helical vs. Ensembl Cavefish
Match: fam78ba (family with sequence similarity 78 member Ba [Source:ZFIN;Acc:ZDB-GENE-140227-3])

HSP 1 Score: 95.5153 bits (236), Expect = 2.644e-22
Identity = 58/171 (33.92%), Postives = 83/171 (48.54%), Query Frame = 1 
Query:   10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPY--SGGVWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDEN---IITMEPERSYKLPSAATKPPHCNAAQSLIW 507
            G S  E   L+ G  K I+DSDG  YP+Y  +     I   T + + L + + D F+PSV W +P   S    LT I R Q F+ W+VA+ +  +     E  VL+ +RW  ++ + +DP MPLG R   V     E    +   EP     +P  A   P+ N AQ L+W
Sbjct:  106 GMSSWELPELREGRVKAISDSDGVSYPWYGNTTETVTISGPTSKPSRLTVSMNDNFYPSVTWAVPVSNSNAPMLTRITRDQSFITWLVALNNATK-----ERIVLQTVRWRMRVDIAVDPSMPLGSRASLVGRAHQEQPHILANNEP-----IPPNALGRPNANDAQVLMW 266
[Close]
BLAST of Tetratricopeptide helical vs. Ensembl Cavefish
Match: fam78bb (protein FAM78B-like [Source:NCBI gene;Acc:103022651])

HSP 1 Score: 92.4337 bits (228), Expect = 2.444e-21
Identity = 60/191 (31.41%), Postives = 94/191 (49.21%), Query Frame = 1 
Query:    1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTV---SDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPKQ 558
            G  G S  E   L+ G+ + I+DSDG  YP+Y  +     +     + +   + + D F+PSV W +P S      LT I R Q F  W+VA+    R     E  +L+ ++W  ++ + +DP MPLG R + V   +  Q + +  MEP     +P  A   P+ N AQ L+W PK   + N ++V P +
Sbjct:   84 GEIGMSSWEIPELRDGVVRAISDSDGVSYPWYGNTTETVTLSGPMAKPSRCIVSMNDNFYPSVTWAVPVSESNVPRLTHITRDQSFTTWLVALNAATR-----EKILLQTVKWRMRVEIAVDPTMPLGSRARLVGPPNQDQPKVLTHMEP-----IPPNAMGKPNANDAQVLMWRPK---RGNPLIVIPSK 261
[Close]
BLAST of Tetratricopeptide helical vs. Ensembl Sea Lamprey
Match: fam78bb (family with sequence similarity 78 member Bb [Source:ZFIN;Acc:ZDB-GENE-030131-7811])

HSP 1 Score: 96.2857 bits (238), Expect = 3.625e-24
Identity = 58/197 (29.44%), Postives = 94/197 (47.72%), Query Frame = 1 
Query:   16 SFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPY-----------SGGV-----WLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPKQ 558
            S  E   L+ G    I+DSDG  YP+Y  +    ++     +   +H+ + D F+PSV W +P              G      WL+ + R Q F  W+VA+    R     E  VL+ +RW  +L + ++P+ PLG+R + V   + E  + +   R+  +P+ A + P  N AQ L+W PK       +++PPKQ
Sbjct:    2 SSWELPALRDGHVSAISDSDGVSYPWYGNTTETASMSASPRKPIRVHISMNDNFYPSVTWAVPVHGGGSGGGGGGDAGTAPPTPWLSRVTRDQTFTTWLVALNPDTR-----ERLVLRTVRWRVRLRIDVEPWRPLGQRARLVGPARQEQPLIL--PRNEPIPTNALERPSANDAQVLMWRPK--CGPCVVVIPPKQ 189
[Close]
BLAST of Tetratricopeptide helical vs. Ensembl Medaka
Match: fam78bb (protein FAM78B [Source:NCBI gene;Acc:101168936])

HSP 1 Score: 96.2857 bits (238), Expect = 1.806e-22
Identity = 62/190 (32.63%), Postives = 92/190 (48.42%), Query Frame = 1 
Query:    1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPY--SGGVWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDC---QDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555
            G  G S  E   L+ GL + I+DSDG  YP+Y  +     I   T + +   + + D F+PSV W +P   S    LT+I R Q F  W+VA+    R     E  +L  ++W  ++ + +DP  PLG R + V      Q   +  MEP     +PS A   P+ N AQ L+W P+       +++PPK
Sbjct:  116 GDIGMSSWELPQLREGLVRAISDSDGVSYPWYGNTTETVTIVGPTSKPSRFTVSMNDNFYPSVTWAVPVSESNTPLLTNIKRDQSFTTWLVALNTTSR-----EKILLHTIKWRMRVDVMVDPSQPLGSRARLVGRLYQDQPRVLARMEP-----VPSNAMGKPNANDAQVLMWRPRRGPPI--VVIPPK 293
[Close]
BLAST of Tetratricopeptide helical vs. Ensembl Medaka
Match: fam78ba (protein FAM78B-like [Source:NCBI gene;Acc:101155797])

HSP 1 Score: 95.9005 bits (237), Expect = 2.261e-22
Identity = 59/178 (33.15%), Postives = 86/178 (48.31%), Query Frame = 1 
Query:    1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHK 528
            G  G S  E   L+ G  K I+DSDG  YP+Y  +     +   T + + L + + D F+PSV W +P S      LT I R Q F+ W+VA+      S   E  VL+ +RW  ++ + +DP MPLG R   V     E    +  +    +P  A   P+ N AQ L+W P+  H+
Sbjct:  106 GDIGMSSWELPELREGRVKAISDSDGVSYPWYGNTTETVTLTGPTSKPSRLTVSMNDNFYPSVTWAVPISNSNTPMLTHITRDQSFITWLVAMN-----SVTKERIVLQTVRWRMRVDIAVDPDMPLGSRASLVGRPYQEQPHILNYQE--PIPPNALGRPNANDAQVLMWRPRRGHR 276
[Close]
BLAST of Tetratricopeptide helical vs. Ensembl Medaka
Match: fam78ba (protein FAM78B-like [Source:NCBI gene;Acc:101155797])

HSP 1 Score: 94.7449 bits (234), Expect = 4.587e-22
Identity = 61/187 (32.62%), Postives = 90/187 (48.13%), Query Frame = 1 
Query:    1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555
            G  G S  E   L+ G  K I+DSDG  YP+Y  +     +   T + + L + + D F+PSV W +P S      LT I R Q F+ W+VA+      S   E  VL+ +RW  ++ + +DP MPLG R   V     E    +  +    +P  A   P+ N AQ L+W P+       +++PPK
Sbjct:  104 GDIGMSSWELPELREGRVKAISDSDGVSYPWYGNTTETVTLTGPTSKPSRLTVSMNDNFYPSVTWAVPISNSNTPMLTHITRDQSFITWLVAMN-----SVTKERIVLQTVRWRMRVDIAVDPDMPLGSRASLVGRPYQEQPHILNYQE--PIPPNALGRPNANDAQVLMWRPRRGAPL--VVIPPK 281
[Close]
BLAST of Tetratricopeptide helical vs. Ensembl Medaka
Match: fam78ab (protein FAM78A [Source:NCBI gene;Acc:101155701])

HSP 1 Score: 92.0485 bits (227), Expect = 1.001e-20
Identity = 61/190 (32.11%), Postives = 95/190 (50.00%), Query Frame = 1 
Query:    1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGG--VWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERV---KTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPK 555
            G  G S  E   L+ G  + I+DSDG  YP+Y  +     +   T + +   + + D F+PSV W +P S      L+ I+R Q F  W+VA+       + SE  VL+ +RW  +L++ +DP  PLG R    + V+  Q + +   EP     +P  A   P+ N AQ L+W PK  +    +++PPK
Sbjct:  147 GDKGMSSWELPDLRDGKIQAISDSDGVNYPWYGNTTETCIVVGPTKKDSKFTVSMNDNFYPSVTWGVPVSDSNVPQLSSIHRDQSFTTWLVAINQ-----ATSETLVLQTIRWRMRLHIHVDPEKPLGLRANLKEPVAQEQPQILGKNEP-----IPPNAMVKPNANDAQVLMWRPK--NGDPVVVIPPK 324
[Close]
BLAST of Tetratricopeptide helical vs. Planmine SMEST
Match: SMESG000065563.1 (SMESG000065563.1)

HSP 1 Score: 442.965 bits (1138), Expect = 2.546e-157
Identity = 214/216 (99.07%), Postives = 214/216 (99.07%), Query Frame = 1 
Query:   10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGGVWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPKQIIVPWDKWVSDMLGSKVRIRKPSEVIEMNINQV 657
            GSS  EFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGGVWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPKQIIVPWDKWVSDMLGSKVRIRKPSEVIEMNINQV
Sbjct:   79 GSSLWEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGGVWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPKQIIVPWDKWVSDMLGSKVRIRKPSEVIEMNINQV 294
[Close]
BLAST of Tetratricopeptide helical vs. Planmine SMEST
Match: SMESG000062370.1 (SMESG000062370.1)

HSP 1 Score: 317.775 bits (813), Expect = 3.962e-109
Identity = 147/211 (69.67%), Postives = 175/211 (82.94%), Query Frame = 1 
Query:   10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGGVWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPKQIIVPWDKWVSDMLGSKVRIRKPSEVIEM 642
            G S  EFHPLKSGLRKMINDSDG+QYPFYS + SL+ IKKG V+K ++ LQIKDYFHPSVVWELPYSGGV LT+INR QKFLIW+VA+KHGK+  +  E+++LKK+RW Y L + +DPFMPLGERV+ + D QD NII ++PE++ +LPS+A  PPHCNAAQSLIWYPK+  KH RILVPPKQIIV WD WV DMLG K R+RKPSEVI +
Sbjct:   11 GKSLWEFHPLKSGLRKMINDSDGRQYPFYSINQSLYTIKKGPVKKATITLQIKDYFHPSVVWELPYSGGVHLTEINRHQKFLIWLVAIKHGKKGVAKEELTILKKIRWVYDLLITVDPFMPLGERVRRIYDVQDNNIIIIDPEKTSRLPSSAASPPHCNAAQSLIWYPKDPLKHARILVPPKQIIVSWDNWVRDMLGHKARVRKPSEVIHI 221
[Close]
BLAST of Tetratricopeptide helical vs. Planmine SMEST
Match: SMESG000062370.1 (SMESG000062370.1)

HSP 1 Score: 318.931 bits (816), Expect = 9.674e-109
Identity = 147/212 (69.34%), Postives = 175/212 (82.55%), Query Frame = 1 
Query:   10 GSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGGVWLTDINRKQKFLIWVVAVKHGKRCSSASEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPKQIIVPWDKWVSDMLGSKVRIRKPSEVIEMN 645
            G S  EFHPLKSGLRKMINDSDG+QYPFYS + SL+ IKKG V+K ++ LQIKDYFHPSVVWELPYSGGV LT+INR QKFLIW+VA+KHGK+  +  E+++LKK+RW Y L + +DPFMPLGERV+ + D QD NII ++PE++ +LPS+A  PPHCNAAQSLIWYPK+  KH RILVPPKQIIV WD WV DMLG K R+RKPSEVI + 
Sbjct:   64 GKSLWEFHPLKSGLRKMINDSDGRQYPFYSINQSLYTIKKGPVKKATITLQIKDYFHPSVVWELPYSGGVHLTEINRHQKFLIWLVAIKHGKKGVAKEELTILKKIRWVYDLLITVDPFMPLGERVRRIYDVQDNNIIIIDPEKTSRLPSSAASPPHCNAAQSLIWYPKDPLKHARILVPPKQIIVSWDNWVRDMLGHKARVRKPSEVIHIQ 275
[Close]
BLAST of Tetratricopeptide helical vs. Planmine SMEST
Match: SMESG000004581.1 (SMESG000004581.1)

HSP 1 Score: 224.942 bits (572), Expect = 2.961e-71
Identity = 108/222 (48.65%), Postives = 150/222 (67.57%), Query Frame = 1 
Query:    1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGGVWLTDINRKQKFLIWVVAVKHGKRCSSAS---------EVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPKQIIVPWDKWVSDMLGS-KVRIRKPSEVI 636
            GCNGSSF EFHPLKSG   M+NDSDG+QYPFYS + S + I+KG V ++++ L  +D+F+P+V WELPY+GGV LTD+ RKQ F +W+VA++ G   + +S          +  LK +RW Y L+MK DP  P+G RV+ + D Q+E  + ++  R  K+P +A  PPHCNAAQSLIWY K +    +ILVPPKQ +VPW+ W+ DM    K++  KP + +
Sbjct:   75 GCNGSSFWEFHPLKSGRHIMVNDSDGRQYPFYSLTSSKYEIEKGRVLESAVTLHYEDHFYPTVAWELPYNGGVRLTDVIRKQDFWVWLVAIQRGSNNAGSSYDLFDPREDSIFTLKTMRWRYNLHMKFDPEKPVGNRVQCIHDIQNEAPVVLDYNR--KIPISALSPPHCNAAQSLIWYSKNSLDKPKILVPPKQTVVPWENWLGDMSSDRKMKATKPKDCM 294
[Close]
BLAST of Tetratricopeptide helical vs. Planmine SMEST
Match: SMESG000001027.1 (SMESG000001027.1)

HSP 1 Score: 214.927 bits (546), Expect = 1.446e-67
Identity = 104/219 (47.49%), Postives = 148/219 (67.58%), Query Frame = 1 
Query:    1 GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTSLHLQIKDYFHPSVVWELPYSGGVWLTDINRKQKFLIWVVAVKHGKRCSSA--------SEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYKLPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPKQIIVPWDKWVSDM-LGSKVRIRKPSE 630
            G  GSS+ EFHPLKSG   M+NDSDG+QYPFYS + S   +KKG V ++ + L  +D+F+P+V WELPY GG  LTD+ RKQ F +W+V ++ GK+ +            V VL+ +RW Y L+M  DP  P+G+R+K + D Q+E    +E  +   LP +A  PPHCNAAQSLIWYP++ ++  +ILVPPKQIIVPW+ W++DM    +++++KP +
Sbjct:   75 GDIGSSYWEFHPLKSGRHTMVNDSDGRQYPFYSLTSSKFELKKGLVHESIVSLHYEDHFYPTVAWELPYCGGTKLTDVIRKQDFWVWLVVIRRGKKKNEELSLFDPRYDHVHVLRTMRWRYNLHMIFDPNKPIGQRLKKLYDVQEETPYVLETCKP--LPLSALSPPHCNAAQSLIWYPRDLNEKLKILVPPKQIIVPWESWLTDMGQNRRLKVQKPKD 291
The following BLAST results are available for this feature:
BLAST of Tetratricopeptide helical vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
FAM78A1.309e-2132.45family with sequence similarity 78 member A [Sourc... [more]
FAM78B1.331e-2131.55family with sequence similarity 78 member B [Sourc... [more]
FAM78B1.481e-2131.55family with sequence similarity 78 member B [Sourc... [more]
FAM78B1.562e-2131.55family with sequence similarity 78 member B [Sourc... [more]
FAM78B1.562e-2131.55family with sequence similarity 78 member B [Sourc... [more]
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BLAST of Tetratricopeptide helical vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tetratricopeptide helical vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tetratricopeptide helical vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 4
Match NameE-valueIdentityDescription
fam78aa8.073e-2431.41family with sequence similarity 78 member Aa [Sour... [more]
fam78ba4.828e-2332.09family with sequence similarity 78 member Ba [Sour... [more]
fam78ab7.655e-2332.09family with sequence similarity 78 member Ab [Sour... [more]
fam78bb8.735e-2032.00family with sequence similarity 78 member Bb [Sour... [more]
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BLAST of Tetratricopeptide helical vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 3
Match NameE-valueIdentityDescription
fam78a7.980e-2330.32family with sequence similarity 78 member A [Sourc... [more]
stard41.560e-2131.91StAR related lipid transfer domain containing 4 [S... [more]
fam78a1.148e-1632.58family with sequence similarity 78 member A [Sourc... [more]
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BLAST of Tetratricopeptide helical vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Fam78b9.138e-2231.55family with sequence similarity 78, member B [Sour... [more]
Fam78a9.354e-2232.45family with sequence similarity 78, member A [Sour... [more]
Fam78a9.354e-2232.45family with sequence similarity 78, member A [Sour... [more]
Fam78b1.017e-2131.55family with sequence similarity 78, member B [Sour... [more]
Fam78b1.073e-2131.55family with sequence similarity 78, member B [Sour... [more]
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BLAST of Tetratricopeptide helical vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 4
Match NameE-valueIdentityDescription
sp|Q5JUQ0|FA78A_HUMAN6.286e-2132.45Protein FAM78A OS=Homo sapiens OX=9606 GN=FAM78A P... [more]
sp|Q8C552|FA78A_MOUSE6.543e-2132.45Protein FAM78A OS=Mus musculus OX=10090 GN=Fam78a ... [more]
sp|Q8BQN5|FA78B_MOUSE7.503e-2131.55Protein FAM78B OS=Mus musculus OX=10090 GN=Fam78b ... [more]
sp|Q5VT40|FA78B_HUMAN7.503e-2131.55Protein FAM78B OS=Homo sapiens OX=9606 GN=FAM78B P... [more]
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BLAST of Tetratricopeptide helical vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A183AFW25.069e-11172.17Uncharacterized protein OS=Echinostoma caproni OX=... [more]
A0A504Z1L35.238e-11172.17Tetratricopeptide helical OS=Fasciola gigantica OX... [more]
A0A4E0RUM55.238e-11172.17Tetratricopeptide helical OS=Fasciola hepatica OX=... [more]
A0A4S2L7697.341e-11070.75Uncharacterized protein OS=Opisthorchis felineus O... [more]
H2KUH81.099e-10970.75Protein FAM78B OS=Clonorchis sinensis OX=79923 GN=... [more]
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BLAST of Tetratricopeptide helical vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 4
Match NameE-valueIdentityDescription
fam78aa4.659e-2532.96protein FAM78A-like [Source:NCBI gene;Acc:10302233... [more]
fam78ab9.750e-2432.11family with sequence similarity 78 member A [Sourc... [more]
fam78ba2.644e-2233.92family with sequence similarity 78 member Ba [Sour... [more]
fam78bb2.444e-2131.41protein FAM78B-like [Source:NCBI gene;Acc:10302265... [more]
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BLAST of Tetratricopeptide helical vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
fam78bb3.625e-2429.44family with sequence similarity 78 member Bb [Sour... [more]
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BLAST of Tetratricopeptide helical vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tetratricopeptide helical vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tetratricopeptide helical vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 4
Match NameE-valueIdentityDescription
fam78bb1.806e-2232.63protein FAM78B [Source:NCBI gene;Acc:101168936][more]
fam78ba2.261e-2233.15protein FAM78B-like [Source:NCBI gene;Acc:10115579... [more]
fam78ba4.587e-2232.62protein FAM78B-like [Source:NCBI gene;Acc:10115579... [more]
fam78ab1.001e-2032.11protein FAM78A [Source:NCBI gene;Acc:101155701][more]
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BLAST of Tetratricopeptide helical vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000065563.12.546e-15799.07SMESG000065563.1[more]
SMESG000062370.13.962e-10969.67SMESG000062370.1[more]
SMESG000062370.19.674e-10969.34SMESG000062370.1[more]
SMESG000004581.12.961e-7148.65SMESG000004581.1[more]
SMESG000001027.11.446e-6747.49SMESG000001027.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30006111 ID=SMED30006111|Name=Tetratricopeptide helical|organism=Schmidtea mediterranea sexual|type=transcript|length=1026bp
GGTTGCAATGGTAGTAGCTTTTGTGAATTTCATCCTTTGAAAAGTGGACT
GCGAAAAATGATAAATGATAGCGACGGTAAGCAGTATCCGTTTTACAGCG
CAAGTCATAGTTTGCATAATATAAAGAAAGGAACTGTTCGAAAAACATCT
CTACATCTTCAAATTAAGGATTATTTTCATCCATCTGTGGTTTGGGAGCT
TCCATATAGTGGCGGGGTTTGGTTGACTGATATTAATCGTAAGCAAAAAT
TTTTGATTTGGGTAGTAGCGGTAAAACACGGAAAAAGATGTAGTAGTGCA
AGCGAAGTTTCAGTTTTAAAGAAGTTACGATGGGAGTATAAACTATATAT
GAAAATTGATCCTTTCATGCCTTTGGGAGAACGAGTAAAAACCGTTTCTG
ATTGTCAAGATGAAAATATTATTACAATGGAACCTGAAAGGTCATATAAG
CTACCTTCAGCAGCAACCAAACCACCTCATTGTAATGCTGCTCAATCATT
GATATGGTATCCTAAAGAAACCCATAAACACAATCGTATTTTAGTGCCAC
CGAAACAGATAATTGTTCCGTGGGACAAGTGGGTATCCGACATGTTAGGT
TCCAAAGTACGAATAAGAAAACCAAGTGAAGTAATAGAAATGAACATTAA
TCAAGTTTAGTTTTCATACAATAGAAAACGATATATGAGAAAAAATAATT
TCACATCGTAACTAATCTAATTAATTTTGTTTTAATATTTGATTGGATAT
ATATTTTTTTGCCCAGATATATGAATATTTTACGAACAACTTTGAGAAAC
AATTTCTAGGGATTTAGCAAAATACAATTATTACTTATCATTATCTGTTA
ATTATTTTCGTAATAATTGAATTGGACCTTTTTAGTTCTATTTCTAATAA
AATTCTTTCCAAACTGTTGTCGAGGTAAGTGTACAAATTTAATTTGAATT
TTTATCATAACATTTTTATCAGATTATTTTGGGAAGATATTTATGAGTAA
TATTCAAATGTGATTGAATTTCGTGC
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protein sequence of SMED30006111-orf-1

>SMED30006111-orf-1 ID=SMED30006111-orf-1|Name=SMED30006111-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=220bp
GCNGSSFCEFHPLKSGLRKMINDSDGKQYPFYSASHSLHNIKKGTVRKTS
LHLQIKDYFHPSVVWELPYSGGVWLTDINRKQKFLIWVVAVKHGKRCSSA
SEVSVLKKLRWEYKLYMKIDPFMPLGERVKTVSDCQDENIITMEPERSYK
LPSAATKPPHCNAAQSLIWYPKETHKHNRILVPPKQIIVPWDKWVSDMLG
SKVRIRKPSEVIEMNINQV*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000208testis
PLANA:0002030early male germ cell
PLANA:0003304testis primordium
Vocabulary: INTERPRO
TermDefinition
IPR029638FAM78
Vocabulary: molecular function
TermDefinition
GO:0003674molecular_function
Vocabulary: cellular component
TermDefinition
GO:0005575cellular_component
Vocabulary: biological process
TermDefinition
GO:0008150biological_process
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029638Protein FAM78PANTHERPTHR31655FAMILY NOT NAMEDcoord: 1..190
NoneNo IPR availablePANTHERPTHR31655:SF7coord: 1..190