SMED30006109

Overview


Name	SMED30006109
Smed ID	SMED30006109
Length (bp)	571

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of SMED30006109 (SMED30006109) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30006109 (SMED30006109) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30006109 (SMED30006109) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30006109 (SMED30006109) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30006109

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 6

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
neoblast	SMED30006109	SMESG000081496.1	dd_Smed_v4_1273_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30006109	SMESG000081496.1	dd_Smed_v4_1273_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30006109	SMESG000081496.1	Contig42785	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30006109	SMESG000081496.1	Contig42785	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30006109	SMESG000081496.1 SMESG000054620.1 SMESG000023001.1	Contig16497	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30006109	SMESG000081496.1 SMESG000054620.1 SMESG000023001.1	Contig16497	uc_Smed_v2	PMID:29674431 Fincher et al., 2018

Note: Hover over icons to view figure legend

Alignments

SMED30006109 aligns in the following genomic locations:


Alignment Location	Alignment Score
v31.002848:23245..23906 +	2766

Homology

[Close]

BLAST of SMED30006109 vs. Ensembl Human
Match: EEF1D (eukaryotic translation elongation factor 1 delta [Source:HGNC Symbol;Acc:HGNC:3211])

HSP 1 Score: 52.7582 bits (125), Expect = 3.354e-8
Identity = 21/36 (58.33%), Postives = 31/36 (86.11%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            +L+EER++ Y +KK+ K  ++AKS+I+LDVKPWDDE
Sbjct:  149 QLREERLRQYAEKKAKKPALVAKSSILLDVKPWDDE 184

[Close]

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            +L+EER++ Y +KK+ K  ++AKS+I+LDVKPWDDE
Sbjct:  149 QLREERLRQYAEKKAKKPALVAKSSILLDVKPWDDE 184

[Close]

BLAST of SMED30006109 vs. Ensembl Human
Match: EEF1D (eukaryotic translation elongation factor 1 delta [Source:HGNC Symbol;Acc:HGNC:3211])

HSP 1 Score: 51.2174 bits (121), Expect = 3.778e-8
Identity = 21/36 (58.33%), Postives = 31/36 (86.11%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            +L+EER++ Y +KK+ K  ++AKS+I+LDVKPWDDE
Sbjct:   13 QLREERLRQYAEKKAKKPALVAKSSILLDVKPWDDE 48

[Close]

BLAST of SMED30006109 vs. Ensembl Human
Match: EEF1D (eukaryotic translation elongation factor 1 delta [Source:HGNC Symbol;Acc:HGNC:3211])

HSP 1 Score: 51.2174 bits (121), Expect = 6.725e-8
Identity = 21/36 (58.33%), Postives = 31/36 (86.11%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            +L+EER++ Y +KK+ K  ++AKS+I+LDVKPWDDE
Sbjct:   48 QLREERLRQYAEKKAKKPALVAKSSILLDVKPWDDE 83

[Close]

BLAST of SMED30006109 vs. Ensembl Human
Match: EEF1D (eukaryotic translation elongation factor 1 delta [Source:HGNC Symbol;Acc:HGNC:3211])

HSP 1 Score: 51.9878 bits (123), Expect = 8.354e-8
Identity = 21/36 (58.33%), Postives = 31/36 (86.11%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            +L+EER++ Y +KK+ K  ++AKS+I+LDVKPWDDE
Sbjct:  130 QLREERLRQYAEKKAKKPALVAKSSILLDVKPWDDE 165

[Close]

BLAST of SMED30006109 vs. Ensembl Zebrafish
Match: eef1da (eukaryotic translation elongation factor 1 delta a (guanine nucleotide exchange protein) [Source:ZFIN;Acc:ZDB-GENE-040426-2740])

HSP 1 Score: 50.447 bits (119), Expect = 8.433e-8
Identity = 21/36 (58.33%), Postives = 31/36 (86.11%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            ++K ER++ Y+Q+K+ K  +IAKS+I+LDVKPWDDE
Sbjct:   55 RIKAERVKEYSQRKAKKPALIAKSSILLDVKPWDDE 90

[Close]

BLAST of SMED30006109 vs. Ensembl Zebrafish
Match: eef1da (eukaryotic translation elongation factor 1 delta a (guanine nucleotide exchange protein) [Source:ZFIN;Acc:ZDB-GENE-040426-2740])

HSP 1 Score: 51.2174 bits (121), Expect = 1.351e-7
Identity = 21/36 (58.33%), Postives = 31/36 (86.11%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            ++K ER++ Y+Q+K+ K  +IAKS+I+LDVKPWDDE
Sbjct:  159 RIKAERVKEYSQRKAKKPALIAKSSILLDVKPWDDE 194

[Close]

BLAST of SMED30006109 vs. Ensembl Zebrafish
Match: eef1da (eukaryotic translation elongation factor 1 delta a (guanine nucleotide exchange protein) [Source:ZFIN;Acc:ZDB-GENE-040426-2740])

HSP 1 Score: 51.2174 bits (121), Expect = 1.374e-7
Identity = 21/36 (58.33%), Postives = 31/36 (86.11%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            ++K ER++ Y+Q+K+ K  +IAKS+I+LDVKPWDDE
Sbjct:  183 RIKAERVKEYSQRKAKKPALIAKSSILLDVKPWDDE 218

[Close]

BLAST of SMED30006109 vs. Ensembl Zebrafish
Match: eef1da (eukaryotic translation elongation factor 1 delta a (guanine nucleotide exchange protein) [Source:ZFIN;Acc:ZDB-GENE-040426-2740])

HSP 1 Score: 50.8322 bits (120), Expect = 1.494e-7
Identity = 21/36 (58.33%), Postives = 31/36 (86.11%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            ++K ER++ Y+Q+K+ K  +IAKS+I+LDVKPWDDE
Sbjct:  166 RIKAERVKEYSQRKAKKPALIAKSSILLDVKPWDDE 201

[Close]

BLAST of SMED30006109 vs. Ensembl Zebrafish
Match: eef1da (eukaryotic translation elongation factor 1 delta a (guanine nucleotide exchange protein) [Source:ZFIN;Acc:ZDB-GENE-040426-2740])

HSP 1 Score: 50.8322 bits (120), Expect = 1.629e-7
Identity = 21/36 (58.33%), Postives = 31/36 (86.11%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            ++K ER++ Y+Q+K+ K  +IAKS+I+LDVKPWDDE
Sbjct:  137 RIKAERVKEYSQRKAKKPALIAKSSILLDVKPWDDE 172

[Close]

BLAST of SMED30006109 vs. Ensembl Xenopus
Match: eef1b2 (eukaryotic translation elongation factor 1 beta 2 [Source:NCBI gene;Acc:448658])

HSP 1 Score: 50.8322 bits (120), Expect = 1.712e-7
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            +++EER+  Y  KKS K  +IAKS+I+LDVKPWDDE
Sbjct:  120 RVREERLAQYEAKKSKKPALIAKSSILLDVKPWDDE 155

[Close]

BLAST of SMED30006109 vs. Ensembl Xenopus
Match: ENSXETT00000019492.1 (eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) [Source:NCBI gene;Acc:496939])

HSP 1 Score: 51.2174 bits (121), Expect = 2.145e-7
Identity = 21/36 (58.33%), Postives = 31/36 (86.11%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            +++EER++ Y +KK+ K  +IAKS+I+LDVKPWDDE
Sbjct:  214 RIREERLRQYAEKKAKKPGVIAKSSILLDVKPWDDE 249

[Close]

BLAST of SMED30006109 vs. Ensembl Xenopus
Match: ENSXETT00000019482.1 (eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) [Source:NCBI gene;Acc:496939])

HSP 1 Score: 51.2174 bits (121), Expect = 2.270e-7
Identity = 21/36 (58.33%), Postives = 31/36 (86.11%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            +++EER++ Y +KK+ K  +IAKS+I+LDVKPWDDE
Sbjct:  190 RIREERLRQYAEKKAKKPGVIAKSSILLDVKPWDDE 225

[Close]

BLAST of SMED30006109 vs. Ensembl Xenopus
Match: ENSXETT00000033558.1 (eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) [Source:NCBI gene;Acc:496939])

HSP 1 Score: 50.8322 bits (120), Expect = 2.401e-7
Identity = 21/36 (58.33%), Postives = 31/36 (86.11%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            +++EER++ Y +KK+ K  +IAKS+I+LDVKPWDDE
Sbjct:  145 RIREERLRQYAEKKAKKPGVIAKSSILLDVKPWDDE 180

[Close]

BLAST of SMED30006109 vs. Ensembl Xenopus
Match: ENSXETT00000033553.1 (eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) [Source:NCBI gene;Acc:496939])

HSP 1 Score: 50.0618 bits (118), Expect = 6.470e-7
Identity = 21/36 (58.33%), Postives = 31/36 (86.11%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            +++EER++ Y +KK+ K  +IAKS+I+LDVKPWDDE
Sbjct:  609 RIREERLRQYAEKKAKKPGVIAKSSILLDVKPWDDE 644

[Close]

BLAST of SMED30006109 vs. Ensembl Mouse
Match: Eef1b2 (eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520])

HSP 1 Score: 51.9878 bits (123), Expect = 3.179e-8
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            KL+EER+  Y  KK+ K  ++AKS+I+LDVKPWDDE
Sbjct:   76 KLREERLAQYESKKAKKPAVVAKSSILLDVKPWDDE 111

[Close]

BLAST of SMED30006109 vs. Ensembl Mouse
Match: Eef1b2 (eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520])

HSP 1 Score: 52.373 bits (124), Expect = 4.634e-8
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            KL+EER+  Y  KK+ K  ++AKS+I+LDVKPWDDE
Sbjct:  117 KLREERLAQYESKKAKKPAVVAKSSILLDVKPWDDE 152

[Close]

BLAST of SMED30006109 vs. Ensembl Mouse
Match: Eef1d (eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) [Source:MGI Symbol;Acc:MGI:1913906])

HSP 1 Score: 51.6026 bits (122), Expect = 4.796e-8
Identity = 21/36 (58.33%), Postives = 31/36 (86.11%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            +L+EER++ Y +KK+ K  ++AKS+I+LDVKPWDDE
Sbjct:   82 RLREERLRQYAEKKAKKPTLVAKSSILLDVKPWDDE 117

[Close]

BLAST of SMED30006109 vs. Ensembl Mouse
Match: Eef1d (eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) [Source:MGI Symbol;Acc:MGI:1913906])

HSP 1 Score: 51.9878 bits (123), Expect = 5.553e-8
Identity = 21/36 (58.33%), Postives = 31/36 (86.11%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            +L+EER++ Y +KK+ K  ++AKS+I+LDVKPWDDE
Sbjct:  173 RLREERLRQYAEKKAKKPTLVAKSSILLDVKPWDDE 208

[Close]

BLAST of SMED30006109 vs. Ensembl Mouse
Match: Eef1d (eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) [Source:MGI Symbol;Acc:MGI:1913906])

HSP 1 Score: 52.7582 bits (125), Expect = 6.002e-8
Identity = 21/36 (58.33%), Postives = 31/36 (86.11%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            +L+EER++ Y +KK+ K  ++AKS+I+LDVKPWDDE
Sbjct:  444 RLREERLRQYAEKKAKKPTLVAKSSILLDVKPWDDE 479

[Close]

BLAST of SMED30006109 vs. UniProt/SwissProt
Match: sp|O70251|EF1B_MOUSE (Elongation factor 1-beta OS=Mus musculus OX=10090 GN=Eef1b PE=1 SV=5)

HSP 1 Score: 52.373 bits (124), Expect = 3.241e-7
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            KL+EER+  Y  KK+ K  ++AKS+I+LDVKPWDDE
Sbjct:  117 KLREERLAQYESKKAKKPAVVAKSSILLDVKPWDDE 152

[Close]

BLAST of SMED30006109 vs. UniProt/SwissProt
Match: sp|Q717R8|EF1D_SHEEP (Elongation factor 1-delta OS=Ovis aries OX=9940 GN=EEF1D PE=2 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 3.328e-7
Identity = 21/36 (58.33%), Postives = 31/36 (86.11%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            +L+EER++ Y +KK+ K  ++AKS+I+LDVKPWDDE
Sbjct:  172 RLREERLRQYAEKKAKKPALVAKSSILLDVKPWDDE 207

[Close]

BLAST of SMED30006109 vs. UniProt/SwissProt
Match: sp|P53787|EF1D_RABIT (Elongation factor 1-delta OS=Oryctolagus cuniculus OX=9986 GN=EEF1D PE=2 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 3.852e-7
Identity = 21/36 (58.33%), Postives = 31/36 (86.11%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            +L+EER++ Y +KK+ K  ++AKS+I+LDVKPWDDE
Sbjct:  172 RLREERLRQYAEKKARKPALVAKSSILLDVKPWDDE 207

[Close]

BLAST of SMED30006109 vs. UniProt/SwissProt
Match: sp|A5D989|EF1D_BOVIN (Elongation factor 1-delta OS=Bos taurus OX=9913 GN=EEF1D PE=2 SV=2)

HSP 1 Score: 52.373 bits (124), Expect = 4.534e-7
Identity = 21/36 (58.33%), Postives = 31/36 (86.11%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            +L+EER++ Y +KK+ K  ++AKS+I+LDVKPWDDE
Sbjct:  172 RLREERLRQYAEKKAKKPALVAKSSILLDVKPWDDE 207

[Close]

BLAST of SMED30006109 vs. UniProt/SwissProt
Match: sp|P57776|EF1D_MOUSE (Elongation factor 1-delta OS=Mus musculus OX=10090 GN=Eef1d PE=1 SV=3)

HSP 1 Score: 51.9878 bits (123), Expect = 4.961e-7
Identity = 21/36 (58.33%), Postives = 31/36 (86.11%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            +L+EER++ Y +KK+ K  ++AKS+I+LDVKPWDDE
Sbjct:  173 RLREERLRQYAEKKAKKPTLVAKSSILLDVKPWDDE 208

[Close]

BLAST of SMED30006109 vs. TrEMBL
Match: A0A3Q0KBP0 (Putative elongation factor-1 beta,delta OS=Schistosoma mansoni OX=6183 PE=4 SV=1)

HSP 1 Score: 49.2914 bits (116), Expect = 8.842e-12
Identity = 34/105 (32.38%), Postives = 58/105 (55.24%), Query Frame = 3

Query:   36 VQFPGFYSAEAQYVSSLYKTPVSSQENPKIETVIQKETAPKVEVTKNIIVQEIEKAREQIKSTLSG-NLTHSFDLSKLEELEKNQKNILSVINDITHRLNKIEMS 347
            +QFP +   E  YVS L  +  S               AP+   T ++  QEI+KARE IK++L    ++  FD+ +L+ELEK   +++S I+D+  R++ +++S
Sbjct:   12 LQFPDYPDIEKAYVSHLSSSAQSK--------------APETLKTGSL-TQEIQKAREHIKTSLDRVAVSRPFDVGRLDELEKLVTSLVSRISDLESRISTMKLS 101

HSP 2 Score: 48.521 bits (114), Expect = 8.842e-12
Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            +++ ER  MY  KK+ K V++AKSNI L+VKPWDDE
Sbjct:  131 RIRSEREAMYLAKKALKPVVVAKSNITLEVKPWDDE 166

[Close]

BLAST of SMED30006109 vs. TrEMBL
Match: G4V6C2 (Putative elongation factor-1 beta,delta OS=Schistosoma mansoni OX=6183 GN=Smp_003970 PE=4 SV=1)

HSP 1 Score: 49.2914 bits (116), Expect = 9.061e-12
Identity = 34/105 (32.38%), Postives = 58/105 (55.24%), Query Frame = 3

Query:   36 VQFPGFYSAEAQYVSSLYKTPVSSQENPKIETVIQKETAPKVEVTKNIIVQEIEKAREQIKSTLSG-NLTHSFDLSKLEELEKNQKNILSVINDITHRLNKIEMS 347
            +QFP +   E  YVS L  +  S               AP+   T ++  QEI+KARE IK++L    ++  FD+ +L+ELEK   +++S I+D+  R++ +++S
Sbjct:   12 LQFPDYPDIEKAYVSHLSSSAQSK--------------APETLKTGSL-TQEIQKAREHIKTSLDRVAVSRPFDVGRLDELEKLVTSLVSRISDLESRISTMKLS 101

HSP 2 Score: 48.521 bits (114), Expect = 9.061e-12
Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            +++ ER  MY  KK+ K V++AKSNI L+VKPWDDE
Sbjct:  131 RIRSEREAMYLAKKALKPVVVAKSNITLEVKPWDDE 166

[Close]

BLAST of SMED30006109 vs. TrEMBL
Match: A0A095A4B8 (Elongation factor 1-delta OS=Schistosoma haematobium OX=6185 GN=MS3_08929 PE=4 SV=1)

HSP 1 Score: 46.595 bits (109), Expect = 1.472e-9
Identity = 35/103 (33.98%), Postives = 57/103 (55.34%), Query Frame = 3

Query:   42 FPGFYSAEAQYVSSLYKTPVSSQENPKIETVIQKETAPKVEVTKNIIVQEIEKAREQIKSTLSG-NLTHSFDLSKLEELEKNQKNILSVINDITHRLNKIEMS 347
            FP +   E  YVS L     SS    K         AP+   T ++  QEI+KARE IK++L    ++  FD+ +L+ELEK   +++S I+D+  R++ +++S
Sbjct:   14 FPDYPDIEKAYVSHL-----SSSTQSK---------APETLKTGSL-AQEIQKAREHIKTSLDRVAVSRPFDVGRLDELEKLVTSLVSRISDLESRISTMKLS 101

HSP 2 Score: 43.1282 bits (100), Expect = 1.472e-9
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            +++ ER   Y  KK+ K V+ AKS+I LDVKPWDDE
Sbjct:  131 RIRSEREAEYLAKKALKPVVAAKSSITLDVKPWDDE 166

[Close]

BLAST of SMED30006109 vs. TrEMBL
Match: A0A430Q7S3 (Elongation factor 1-delta OS=Schistosoma bovis OX=6184 GN=DC041_0008318 PE=4 SV=1)

HSP 1 Score: 46.595 bits (109), Expect = 1.546e-9
Identity = 35/103 (33.98%), Postives = 57/103 (55.34%), Query Frame = 3

Query:   42 FPGFYSAEAQYVSSLYKTPVSSQENPKIETVIQKETAPKVEVTKNIIVQEIEKAREQIKSTLSG-NLTHSFDLSKLEELEKNQKNILSVINDITHRLNKIEMS 347
            FP +   E  YVS L     SS    K         AP+   T ++  QEI+KARE IK++L    ++  FD+ +L+ELEK   +++S I+D+  R++ +++S
Sbjct:   14 FPDYPDIEKAYVSHL-----SSSTQSK---------APETLKTGSL-AQEIQKAREHIKTSLDRVAVSRPFDVGRLDELEKLVTSLVSRISDLESRISTMKLS 101

HSP 2 Score: 43.5134 bits (101), Expect = 1.546e-9
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            +++ ER   Y  KK+ K V+ AKS+I LDVKPWDDE
Sbjct:  131 RIRSEREAEYLAKKALKPVVAAKSSITLDVKPWDDE 166

[Close]

BLAST of SMED30006109 vs. TrEMBL
Match: A0A212FIY9 (Elongation factor 1 delta OS=Danaus plexippus plexippus OX=278856 GN=KGM_203816 PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 2.509e-7
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            KL+EER+  YN KKS K V+IAKSNIILDVKPWDDE
Sbjct:  156 KLREERLAAYNAKKSKKPVLIAKSNIILDVKPWDDE 191

[Close]

BLAST of SMED30006109 vs. Ensembl Cavefish
Match: eef1b2 (eukaryotic translation elongation factor 1 beta 2 [Source:NCBI gene;Acc:103032892])

HSP 1 Score: 54.6842 bits (130), Expect = 4.524e-9
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            ++KEER+  YN KKS K  +IAKS+I+LDVKPWDDE
Sbjct:  117 RIKEERLAAYNAKKSKKPALIAKSSILLDVKPWDDE 152

[Close]

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            ++KEER+  YN KKS K  +IAKS+I+LDVKPWDDE
Sbjct:  117 RIKEERLAAYNAKKSKKPALIAKSSILLDVKPWDDE 152

[Close]

BLAST of SMED30006109 vs. Ensembl Cavefish
Match: eef1da (eukaryotic translation elongation factor 1 delta a (guanine nucleotide exchange protein) [Source:ZFIN;Acc:ZDB-GENE-040426-2740])

HSP 1 Score: 51.2174 bits (121), Expect = 8.471e-8
Identity = 22/36 (61.11%), Postives = 30/36 (83.33%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            ++K +R+Q Y  +KS K V+IAKS+I+LDVKPWDDE
Sbjct:  124 RIKAQRVQEYAARKSAKPVLIAKSSILLDVKPWDDE 159

[Close]

BLAST of SMED30006109 vs. Ensembl Cavefish
Match: eef1da (eukaryotic translation elongation factor 1 delta a (guanine nucleotide exchange protein) [Source:ZFIN;Acc:ZDB-GENE-040426-2740])

HSP 1 Score: 51.6026 bits (122), Expect = 9.090e-8
Identity = 22/36 (61.11%), Postives = 30/36 (83.33%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            ++K +R+Q Y  +KS K V+IAKS+I+LDVKPWDDE
Sbjct:  160 RIKAQRVQEYAARKSAKPVLIAKSSILLDVKPWDDE 195

[Close]

BLAST of SMED30006109 vs. Ensembl Cavefish
Match: eef1da (eukaryotic translation elongation factor 1 delta a (guanine nucleotide exchange protein) [Source:ZFIN;Acc:ZDB-GENE-040426-2740])

HSP 1 Score: 51.2174 bits (121), Expect = 9.124e-8
Identity = 22/36 (61.11%), Postives = 30/36 (83.33%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            ++K +R+Q Y  +KS K V+IAKS+I+LDVKPWDDE
Sbjct:  160 RIKAQRVQEYAARKSAKPVLIAKSSILLDVKPWDDE 195

[Close]

BLAST of SMED30006109 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000008426.1 (pep scaffold:Pmarinus_7.0:GL501239:13751:22054:1 gene:ENSPMAG00000007622.1 transcript:ENSPMAT00000008426.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 55.8398 bits (133), Expect = 5.043e-10
Identity = 24/36 (66.67%), Postives = 33/36 (91.67%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            KL+EER++ Y++KK+ K V+IAKS+I+LDVKPWDDE
Sbjct:  143 KLREERVKAYSEKKAKKPVLIAKSSIVLDVKPWDDE 178

[Close]

BLAST of SMED30006109 vs. Ensembl Nematostella
Match: EDO31204 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SYL3])

HSP 1 Score: 53.9138 bits (128), Expect = 4.358e-9
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            +L+E+R+  YN KK+TK  +IAKSNII DVKPWDDE
Sbjct:  156 QLREKRLAEYNAKKATKKPVIAKSNIIFDVKPWDDE 191

[Close]

BLAST of SMED30006109 vs. Ensembl Medaka
Match: farsb (phenylalanyl-tRNA synthetase subunit beta [Source:NCBI gene;Acc:101157145])

HSP 1 Score: 50.0618 bits (118), Expect = 3.968e-7
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            ++KE+R+  Y  KKS K  +IAKS+I+LDVKPWDDE
Sbjct:  738 RIKEQRLAEYAAKKSKKPALIAKSSILLDVKPWDDE 773

[Close]

BLAST of SMED30006109 vs. Planmine SMEST
Match: SMESG000081496.1 (SMESG000081496.1)

HSP 1 Score: 228.409 bits (581), Expect = 3.349e-76
Identity = 136/140 (97.14%), Postives = 138/140 (98.57%), Query Frame = 3

Query:   18 MNIDNVVQFPGFYSAEAQYVSSLYKTPVSSQENPKIETVIQKETAPKVEVTKNIIVQEIEKAREQIKSTLSGNLTHSFDLSKLEELEKNQKNILSVINDITHRLNKIEMSLNIQSSVQXXXXXXXXXXXXXXXXXXLFGS 437
            MNIDNVVQF GFYSAEAQYVSSLYKTPVSSQE PKIETVIQKETAPKVEVTKNIIVQEIEKARE+IKSTLSGNLTHSFDLSKLEELEKNQKNILSVINDITHRL+KIEMSLNIQSSVQEKKEDIKEKKVEDEDDVDLFGS
Sbjct:    1 MNIDNVVQFLGFYSAEAQYVSSLYKTPVSSQETPKIETVIQKETAPKVEVTKNIIVQEIEKAREKIKSTLSGNLTHSFDLSKLEELEKNQKNILSVINDITHRLSKIEMSLNIQSSVQEKKEDIKEKKVEDEDDVDLFGS 140

HSP 2 Score: 74.7146 bits (182), Expect = 3.349e-76
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE
Sbjct:  150 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 185

[Close]

BLAST of SMED30006109 vs. Planmine SMEST
Match: SMESG000026862.1 (SMESG000026862.1)

HSP 1 Score: 53.1434 bits (126), Expect = 1.220e-8
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 2

Query:  464 KLKEERIQMYNQKKSTKAVIIAKSNIILDVKPWDDE 571
            ++K+ER+  Y  KKSTK  IIAKS+I LDVKPWDDE
Sbjct:   99 RIKQERLDAYAAKKSTKTAIIAKSSITLDVKPWDDE 134

The following BLAST results are available for this feature:

BLAST of SMED30006109 vs. Ensembl Human
BLAST of SMED30006109 vs. Ensembl Celegans
BLAST of SMED30006109 vs. Ensembl Fly
BLAST of SMED30006109 vs. Ensembl Zebrafish
BLAST of SMED30006109 vs. Ensembl Xenopus
BLAST of SMED30006109 vs. Ensembl Mouse
BLAST of SMED30006109 vs. UniProt/SwissProt
BLAST of SMED30006109 vs. TrEMBL
BLAST of SMED30006109 vs. Ensembl Cavefish
BLAST of SMED30006109 vs. Ensembl Sea Lamprey
BLAST of SMED30006109 vs. Ensembl Yeast
BLAST of SMED30006109 vs. Ensembl Nematostella
BLAST of SMED30006109 vs. Ensembl Medaka
BLAST of SMED30006109 vs. Planmine SMEST

BLAST of SMED30006109 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
EEF1D	3.354e-8	58.33	eukaryotic translation elongation factor 1 delta [...	[more]
EEF1D	3.354e-8	58.33	eukaryotic translation elongation factor 1 delta [...	[more]
EEF1D	3.778e-8	58.33	eukaryotic translation elongation factor 1 delta [...	[more]
EEF1D	6.725e-8	58.33	eukaryotic translation elongation factor 1 delta [...	[more]
EEF1D	8.354e-8	58.33	eukaryotic translation elongation factor 1 delta [...	[more]

BLAST of SMED30006109 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30006109 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30006109 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
eef1da	8.433e-8	58.33	eukaryotic translation elongation factor 1 delta a...	[more]
eef1da	1.351e-7	58.33	eukaryotic translation elongation factor 1 delta a...	[more]
eef1da	1.374e-7	58.33	eukaryotic translation elongation factor 1 delta a...	[more]
eef1da	1.494e-7	58.33	eukaryotic translation elongation factor 1 delta a...	[more]
eef1da	1.629e-7	58.33	eukaryotic translation elongation factor 1 delta a...	[more]

BLAST of SMED30006109 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
eef1b2	1.712e-7	61.11	eukaryotic translation elongation factor 1 beta 2 ...	[more]
ENSXETT00000019492.1	2.145e-7	58.33	eukaryotic translation elongation factor 1 delta (...	[more]
ENSXETT00000019482.1	2.270e-7	58.33	eukaryotic translation elongation factor 1 delta (...	[more]
ENSXETT00000033558.1	2.401e-7	58.33	eukaryotic translation elongation factor 1 delta (...	[more]
ENSXETT00000033553.1	6.470e-7	58.33	eukaryotic translation elongation factor 1 delta (...	[more]

BLAST of SMED30006109 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Eef1b2	3.179e-8	61.11	eukaryotic translation elongation factor 1 beta 2 ...	[more]
Eef1b2	4.634e-8	61.11	eukaryotic translation elongation factor 1 beta 2 ...	[more]
Eef1d	4.796e-8	58.33	eukaryotic translation elongation factor 1 delta (...	[more]
Eef1d	5.553e-8	58.33	eukaryotic translation elongation factor 1 delta (...	[more]
Eef1d	6.002e-8	58.33	eukaryotic translation elongation factor 1 delta (...	[more]

BLAST of SMED30006109 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|O70251\|EF1B_MOUSE	3.241e-7	61.11	Elongation factor 1-beta OS=Mus musculus OX=10090 ...	[more]
sp\|Q717R8\|EF1D_SHEEP	3.328e-7	58.33	Elongation factor 1-delta OS=Ovis aries OX=9940 GN...	[more]
sp\|P53787\|EF1D_RABIT	3.852e-7	58.33	Elongation factor 1-delta OS=Oryctolagus cuniculus...	[more]
sp\|A5D989\|EF1D_BOVIN	4.534e-7	58.33	Elongation factor 1-delta OS=Bos taurus OX=9913 GN...	[more]
sp\|P57776\|EF1D_MOUSE	4.961e-7	58.33	Elongation factor 1-delta OS=Mus musculus OX=10090...	[more]

BLAST of SMED30006109 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A3Q0KBP0	8.842e-12	32.38	Putative elongation factor-1 beta,delta OS=Schisto...	[more]
G4V6C2	9.061e-12	32.38	Putative elongation factor-1 beta,delta OS=Schisto...	[more]
A0A095A4B8	1.472e-9	33.98	Elongation factor 1-delta OS=Schistosoma haematobi...	[more]
A0A430Q7S3	1.546e-9	33.98	Elongation factor 1-delta OS=Schistosoma bovis OX=...	[more]
A0A212FIY9	2.509e-7	77.78	Elongation factor 1 delta OS=Danaus plexippus plex...	[more]

BLAST of SMED30006109 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
eef1b2	4.524e-9	66.67	eukaryotic translation elongation factor 1 beta 2 ...	[more]
eef1b2	4.524e-9	66.67	eukaryotic translation elongation factor 1 beta 2 ...	[more]
eef1da	8.471e-8	61.11	eukaryotic translation elongation factor 1 delta a...	[more]
eef1da	9.090e-8	61.11	eukaryotic translation elongation factor 1 delta a...	[more]
eef1da	9.124e-8	61.11	eukaryotic translation elongation factor 1 delta a...	[more]

BLAST of SMED30006109 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1


Match Name	E-value	Identity	Description
ENSPMAT00000008426.1	5.043e-10	66.67	pep scaffold:Pmarinus_7.0:GL501239:13751:22054:1 g...	[more]

BLAST of SMED30006109 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30006109 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1


Match Name	E-value	Identity	Description
EDO31204	4.358e-9	66.67	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of SMED30006109 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1


Match Name	E-value	Identity	Description
farsb	3.968e-7	61.11	phenylalanyl-tRNA synthetase subunit beta [Source:...	[more]

BLAST of SMED30006109 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2


Match Name	E-value	Identity	Description
SMESG000081496.1	3.349e-76	97.14	SMESG000081496.1	[more]
SMESG000026862.1	1.220e-8	66.67	SMESG000026862.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30006109 ID=SMED30006109|Name=SMED30006109|organism=Schmidtea mediterranea sexual|type=transcript|length=571bp
TAAAATTCAAATATATCATGAACATCGACAACGTTGTCCAATTTCCTGGT
TTCTACTCAGCAGAAGCTCAGTATGTCTCATCATTATACAAAACACCAGT
TTCTAGCCAAGAGAATCCTAAAATAGAAACAGTAATTCAAAAAGAAACTG
CTCCAAAAGTTGAAGTTACTAAAAATATTATTGTTCAAGAAATTGAAAAA
GCCCGTGAACAAATAAAATCTACCTTGAGCGGAAATTTGACACATTCATT
TGATTTATCTAAATTAGAAGAACTTGAAAAAAATCAAAAAAATATTTTGT
CAGTTATTAACGATATAACTCATCGCCTGAACAAAATTGAAATGTCACTT
AACATTCAATCATCAGTTCAAGAGAAGAAAGAGGATATAAAAGAAAAGAA
AGTCGAAGATGAGGATGATGTTGACTTATTTGGTTCAGATGATGAAGAAG
ATGATGAGAATGAAAGCTTAAAGAAGAAAGAATTCAAATGTACAATCAAA
AAAAATCTACAAAAGCAGTTATTATTGCCAAATCCAATATCATTCTTGAT
GTTAAACCATGGGATGATGAA

protein sequence of SMED30006109-orf-1

>SMED30006109-orf-1 ID=SMED30006109-orf-1|Name=SMED30006109-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=189bp
KFKYIMNIDNVVQFPGFYSAEAQYVSSLYKTPVSSQENPKIETVIQKETA
PKVEVTKNIIVQEIEKAREQIKSTLSGNLTHSFDLSKLEELEKNQKNILS
VINDITHRLNKIEMSLNIQSSVQEKKEDIKEKKVEDEDDVDLFGSDDEED
DENESLKKKEFKCTIKKNLQKQLLLPNPISFLMLNHGMM

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR018940	EF-1_beta_acid_region_euk
IPR014717	Transl_elong_EF1B/ribosomal_S6
IPR001326	Transl_elong_EF1B_B/D_CS

Vocabulary: **biological process**
Term	Definition
GO:0006414	translational elongation

Vocabulary: **molecular function**
Term	Definition
GO:0003746	translation elongation factor activity

Vocabulary: **cellular component**
Term	Definition
GO:0005853	eukaryotic translation elongation factor 1 complex

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018940	Elongation factor 1 beta central acidic region, eukaryote	SMART	SM01182	EF-1_beta_acid_2	coord: 142..168 e-value: 1.1E-4 score: 31.6
IPR018940	Elongation factor 1 beta central acidic region, eukaryote	PFAM	PF10587	EF-1_beta_acid	coord: 142..168 e-value: 1.2E-11 score: 44.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..139
None	No IPR available	PANTHER	PTHR11595	ELONGATION FACTOR 1-BETA	coord: 48..189
None	No IPR available	PANTHER	PTHR11595:SF26	ELONGATION FACTOR 1-DELTA	coord: 48..189
IPR001326	Translation elongation factor EF1B, beta/delta chains, conserved site	PROSITE	PS00824	EF1BD_1	coord: 136..144

Main menu

SMED30006109

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 6

Owlery

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