SMED30006092

Overview
NameSMED30006092
Smed IDSMED30006092
Length (bp)1462
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30006092 (SMED30006092) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30006092 (SMED30006092) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30006092 (SMED30006092) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30006092 (SMED30006092) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30006092

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 9

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30006092SMESG000020731.1 SMESG000020729.1 SmedASXL_013846SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
protonephridiaSMED30006092SMESG000020731.1 SMESG000020729.1 dd_Smed_v4_11220_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30006092SMESG000020731.1 SMESG000020729.1 dd_Smed_v4_11220_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30006092SMESG000020731.1 SMESG000020729.1 dd_Smed_v4_11220_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30006092SMESG000020731.1 SMESG000020729.1 dd_Smed_v4_11220_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30006092SMESG000020731.1 SMESG000020729.1 dd_Smed_v4_11220_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30006092SMESG000020731.1 SMESG000020729.1 dd_Smed_v4_11220_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30006092SMESG000020731.1 SMESG000020729.1 dd_Smed_v4_11220_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30006092SMESG000020731.1 SMESG000020729.1 dd_Smed_v6_11220_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SMED30006092 vs. TrEMBL
Match: A0A564YEW7 (Uncharacterized protein OS=Hymenolepis diminuta OX=6216 GN=WMSIL1_LOCUS5689 PE=4 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.346e-16
Identity = 45/129 (34.88%), Postives = 66/129 (51.16%), Query Frame = 2 
Query:  755 CTCSQTHEKCLPRLVRNRTEYIIANNIVETNFVEETLTLNLVDHENCGCRSRCLNRKCISNFEFDYKSQADCSCKCKDNQKLCQKILKGYHNFTEADYLCILSGECLAPDCLGGQLSEELLYLRKCPQV 1141
            CTC+   E+CLP  VR +T  ++  N  E     E + L   +H  C C+ RC NR+C+   + +  +  DC C C+     C+ +L+G   FTE +    L+G  + P C  GQL E  LY R CP+ 
Sbjct:  488 CTCALPEEECLPTEVRLKTSPVVVYNTAEGTTTTEVIAL--TEHMGCQCKRRCDNRQCVPPLKLNKYTYDDCYCYCEKGDARCEALLEGQEKFTEKELPTPLNGSFIMPPCYHGQLDEVHLYFRHCPRA 614
[Close]
BLAST of SMED30006092 vs. TrEMBL
Match: A0A5K3EP67 (Uncharacterized protein OS=Mesocestoides corti OX=53468 PE=4 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.019e-14
Identity = 44/128 (34.38%), Postives = 65/128 (50.78%), Query Frame = 2 
Query:  755 CTCSQTHEKCLPRLVRNRTEYIIANNIVETNFVEETLTLNLVDHENCGCRSRCLNRKCISNFEFDYKSQADCSCKCKDNQKLCQKILKGYHNFTEADYLCILSGECLAPDCLGGQLSEELLYLRKCPQ 1138
            CTC    E+CLP  VR +   +I  N  + +   E + L   +H +CGC+ RC NR+CI   + +  +  DC C C +    CQ +L G   FT+ +    L+G  + P C  G + E  LY R CP+
Sbjct:  445 CTCLLPEEECLPTKVRLKVASVIVYNTSKGSTSTEVIAL--TEHVSCGCQRRCENRRCIPPLQLNNYTYDDCYCSCPEGNTRCQALLDGRAKFTDKELQIPLNGSYILPPCYHGPMDEVHLYHRHCPR 570
[Close]
BLAST of SMED30006092 vs. TrEMBL
Match: A0A430QAU4 (Uncharacterized protein OS=Schistosoma bovis OX=6184 GN=DC041_0003805 PE=4 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.152e-14
Identity = 46/128 (35.94%), Postives = 66/128 (51.56%), Query Frame = 2 
Query:  755 CTCSQTHEKCLPRLVRNRTEYIIANNIVE-TNFVEETLTLNLVDHENCGCRSRCLNRKCISNFEFDYKSQADCSCKCKDNQKLCQKILKGYHNFTEADYLCILSGECLAPDCLGGQLSEELLYLRKCP 1135
            C C    E+CLP  V  +T  +    IV   NF   T  + L +H  CGC+ RC NR CI+  +F   + +DC+C C+ N K C ++L+G   FT  +    L+G  + P C  G + +  LY R CP
Sbjct:  615 CNCETLEEECLPIKVSLKTFAVAVMQIVPFGNFTHSTELIALTNHLQCGCQPRCSNRLCIAPLKFIMHTFSDCACVCQPNDKRCFELLEGKRQFTAEEIPLPLNGSYILPPCRYGVMDDLHLYHRHCP 742
[Close]
BLAST of SMED30006092 vs. TrEMBL
Match: A0A3Q0KTU2 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 PE=4 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 8.167e-14
Identity = 46/128 (35.94%), Postives = 65/128 (50.78%), Query Frame = 2 
Query:  755 CTCSQTHEKCLPRLVRNRTEYIIANNIVE-TNFVEETLTLNLVDHENCGCRSRCLNRKCISNFEFDYKSQADCSCKCKDNQKLCQKILKGYHNFTEADYLCILSGECLAPDCLGGQLSEELLYLRKCP 1135
            C C    E+CLP  V  +T  +    IV   NF   T  + L +H  CGC+ RC NR CI   +F   + +DC+C C+ N K C ++L+G   FT  +    L+G  + P C  G + +  LY R CP
Sbjct:  600 CNCETLEEECLPVKVSLKTFAVAVMQIVPFGNFTHSTELIALTNHLQCGCQPRCSNRLCIPPLKFIMHTFSDCACVCQPNDKRCFELLEGKRQFTAEEIPLPLNGSYILPPCRYGVMDDLHLYHRHCP 727
[Close]
BLAST of SMED30006092 vs. TrEMBL
Match: A0A158QUI6 (Uncharacterized protein OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS6294 PE=4 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.199e-13
Identity = 44/138 (31.88%), Postives = 65/138 (47.10%), Query Frame = 2 
Query:  755 CTCSQTHEKCLPRLVRNRTEYIIANNIVE----------TNFVEETLTLNLVDHENCGCRSRCLNRKCISNFEFDYKSQADCSCKCKDNQKLCQKILKGYHNFTEADYLCILSGECLAPDCLGGQLSEELLYLRKCPQ 1138
            CTC    E+CLP  VR +   +I  N+            +     T  + L +H +CGC+ RC NR+CI   + +  +  DC C C +    CQ +L G   FT+ +    L+G  + P C  G + E  LY R CP+
Sbjct:  403 CTCLLPEEECLPTKVRLKVASVIVYNVSSKINPDLGLPTSKGSTSTEVIALTEHVSCGCQRRCENRRCIPPLQLNNYTYDDCYCSCPEGNTRCQALLDGRAKFTDKELQIPLNGSYILPPCYHGPMDEVHLYHRHCPR 540
[Close]
BLAST of SMED30006092 vs. Planmine SMEST
Match: SMESG000020729.1 (SMESG000020729.1)

HSP 1 Score: 283.493 bits (724), Expect = 8.451e-95
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 2 
Query:  746 PKDCTCSQTHEKCLPRLVRNRTEYIIANNIVETNFVEETLTLNLVDHENCGCRSRCLNRKCISNFEFDYKSQADCSCKCKDNQKLCQKILKGYHNFTEADYLCILSGECLAPDCLGGQLSEELLYLRKCPQVPY 1147
            PKDCTCSQTHEKCLPRLVRNRTEYIIANNIVETNFVEETLTLNLVDHENCGCRSRCLNRKCISNFEFDYKSQADCSCKCKDNQKLCQKILKGYHNFTEADYLCILSGECLAPDCLGGQLSEELLYLRKCPQVPY
Sbjct:    2 PKDCTCSQTHEKCLPRLVRNRTEYIIANNIVETNFVEETLTLNLVDHENCGCRSRCLNRKCISNFEFDYKSQADCSCKCKDNQKLCQKILKGYHNFTEADYLCILSGECLAPDCLGGQLSEELLYLRKCPQVPY 135
[Close]
BLAST of SMED30006092 vs. Planmine SMEST
Match: SMESG000042814.1 (SMESG000042814.1)

HSP 1 Score: 119.398 bits (298), Expect = 4.944e-30
Identity = 64/170 (37.65%), Postives = 96/170 (56.47%), Query Frame = 2 
Query:  641 ACLERTEIFCVFKYFQEMKVKFYQVV--PKAFLVKRCPKD-CTCSQTHEKCLPRLVRNRTEYIIANNIVETNFVEETLTLNLVDHENCGCRSRCLNRKCISNFEFDYKSQADCSCKCKDNQK-LCQKILKGYHNFTEADYLCILSGECLAPDCLGGQLSEELLYLRKCPQ 1138
             C  + + FC+ ++F       Y V+  P    V+RCPKD C C+  +EKCLP  ++ +  Y++ +   + +  E T  L L  H  C C+ +CLNRKCI  F F       C C C  +++  C+++L+G   F+++DY CI+SG CL PDCL   LSEE LY + CP+
Sbjct:  137 VCKPQNQTFCMKRFFSLKPGSEYIVLFRPAVLPVQRCPKDNCQCTNKNEKCLPTTIQKKLHYVVVD---DKSGQEYTYALYLSQHVGCTCKPKCLNRKCIEPF-FKRDKNGSCKCLCPRHKRNECEQVLQGRKKFSKSDYNCIVSGNCLTPDCLNQPLSEESLYNKMCPR 302
[Close]
BLAST of SMED30006092 vs. Planmine SMEST
Match: SMESG000042814.1 (SMESG000042814.1)

HSP 1 Score: 119.013 bits (297), Expect = 8.976e-30
Identity = 65/173 (37.57%), Postives = 97/173 (56.07%), Query Frame = 2 
Query:  632 NKQACLERTEIFCVFKYFQEMKVKFYQVV--PKAFLVKRCPKD-CTCSQTHEKCLPRLVRNRTEYIIANNIVETNFVEETLTLNLVDHENCGCRSRCLNRKCISNFEFDYKSQADCSCKCKDNQK-LCQKILKGYHNFTEADYLCILSGECLAPDCLGGQLSEELLYLRKCPQ 1138
            N   C  + + FC+ ++F       Y V+  P    V+RCPKD C C+  +EKCLP  ++ +  Y++ +   + +  E T  L L  H  C C+ +CLNRKCI  F F       C C C  +++  C+++L+G   F+++DY CI+SG CL PDCL   LSEE LY + CP+
Sbjct:  155 NFGVCKPQNQTFCMKRFFSLKPGSEYIVLFRPAVLPVQRCPKDNCQCTNKNEKCLPTTIQKKLHYVVVD---DKSGQEYTYALYLSQHVGCTCKPKCLNRKCIEPF-FKRDKNGSCKCLCPRHKRNECEQVLQGRKKFSKSDYNCIVSGNCLTPDCLNQPLSEESLYNKMCPR 323
[Close]
BLAST of SMED30006092 vs. Planmine SMEST
Match: SMESG000042814.1 (SMESG000042814.1)

HSP 1 Score: 119.013 bits (297), Expect = 1.194e-29
Identity = 65/173 (37.57%), Postives = 97/173 (56.07%), Query Frame = 2 
Query:  632 NKQACLERTEIFCVFKYFQEMKVKFYQVV--PKAFLVKRCPKD-CTCSQTHEKCLPRLVRNRTEYIIANNIVETNFVEETLTLNLVDHENCGCRSRCLNRKCISNFEFDYKSQADCSCKCKDNQK-LCQKILKGYHNFTEADYLCILSGECLAPDCLGGQLSEELLYLRKCPQ 1138
            N   C  + + FC+ ++F       Y V+  P    V+RCPKD C C+  +EKCLP  ++ +  Y++ +   + +  E T  L L  H  C C+ +CLNRKCI  F F       C C C  +++  C+++L+G   F+++DY CI+SG CL PDCL   LSEE LY + CP+
Sbjct:  158 NFGVCKPQNQTFCMKRFFSLKPGSEYIVLFRPAVLPVQRCPKDNCQCTNKNEKCLPTTIQKKLHYVVVD---DKSGQEYTYALYLSQHVGCTCKPKCLNRKCIEPF-FKRDKNGSCKCLCPRHKRNECEQVLQGRKKFSKSDYNCIVSGNCLTPDCLNQPLSEESLYNKMCPR 326
The following BLAST results are available for this feature:
BLAST of SMED30006092 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006092 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006092 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006092 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006092 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006092 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006092 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006092 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A564YEW72.346e-1634.88Uncharacterized protein OS=Hymenolepis diminuta OX... [more]
A0A5K3EP671.019e-1434.38Uncharacterized protein OS=Mesocestoides corti OX=... [more]
A0A430QAU44.152e-1435.94Uncharacterized protein OS=Schistosoma bovis OX=61... [more]
A0A3Q0KTU28.167e-1435.94Uncharacterized protein OS=Schistosoma mansoni OX=... [more]
A0A158QUI61.199e-1331.88Uncharacterized protein OS=Mesocestoides corti OX=... [more]
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BLAST of SMED30006092 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006092 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006092 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006092 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006092 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006092 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4
Match NameE-valueIdentityDescription
SMESG000020729.18.451e-95100.00SMESG000020729.1[more]
SMESG000042814.14.944e-3037.65SMESG000042814.1[more]
SMESG000042814.18.976e-3037.57SMESG000042814.1[more]
SMESG000042814.11.194e-2937.57SMESG000042814.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30006092 ID=SMED30006092|Name=SMED30006092|organism=Schmidtea mediterranea sexual|type=transcript|length=1462bp
AAAACACAATTTGAATGTTCTAAATTCGTATAAAATAGATTTATAAATAA
ATGATTCTTTAAAATAAAATTATTATAAATTTAATCAAATTTTCAATCCA
TCCCGACAAATGTTCACTTGCAACTTGATTTTTCATATATTTTTCATTAT
TAATTTCAATGAAGTTTTTCCATGCATATCAAGAAATGTTGAAGATAAAT
CAAAAAATCATAAAAATTTCGAGGAGATTCAAATGTTCCAAACTACTTTG
GAATATATAACTAAAAAAACAGATGAAACTGAACCGAATATTATCTCAGA
CTTTCAAACGTACCTCGCAAATAAATATGAATCACTGATTAAAATTGAGG
AATTGCAATTTTTATGGGAAAAACTGAAAGAATTTTCTCTTCAAAACGGT
TTCCTCACAAACACACACAAATTTAGACGGTCGAAAAAGCATTTCCGAAT
TTTGTCACCGAACATTTCGAATATGAAAACTTTAGCCATTGAAAAAATTG
AAAGTTATCTTCAAAACGAAGATAAAAAGTTCAAGCTTGCAAGAGCGTCA
AGCAATTCTAGATCAGTATCAACTCAAGTCGTCGAAAGAAGCAGAAAAAT
CTACCTGGCTTTTGCAGCAGGAAGAATATTTAATAAACAAGCCTGTTTAG
AAAGAACTGAGATCTTTTGTGTATTCAAATACTTTCAAGAAATGAAAGTG
AAATTCTATCAAGTGGTTCCAAAAGCTTTCTTAGTCAAACGATGCCCCAA
AGATTGTACATGTTCACAGACTCATGAAAAATGTTTACCTAGATTGGTAC
GGAATAGAACAGAATATATAATTGCCAATAATATTGTAGAAACTAATTTT
GTGGAAGAAACTTTGACACTCAATCTGGTAGATCACGAAAATTGTGGTTG
CAGAAGCAGATGTCTTAATCGAAAATGTATCTCAAATTTTGAATTTGATT
ACAAATCTCAAGCCGACTGTTCCTGTAAGTGCAAAGACAATCAGAAATTA
TGTCAAAAGATTCTAAAAGGCTATCACAATTTCACTGAGGCGGATTATCT
TTGCATTCTCAGTGGGGAATGTCTTGCGCCAGATTGTTTAGGTGGACAAT
TATCCGAAGAACTACTCTACTTGCGGAAATGTCCTCAAGTTCCTTATTAA
ATCACTGAACATATGGGATTTTTCAAAATAAATTATTTTTCTACTATTAT
CATTTATCAGTAGTATATGTTTGATATTTTTGTTGAATTTAAACGGTAAA
TCATTATCAGAATTTAGTGTTGATCGGGTTTATTGTTGAATTTGAAGAAC
TCTATTTCGAGTCAAATAATATTTATTATTTTATTTCTTCAATGCATTTA
CATTGAAACAAAAGGATTTTAAAACTGAATTTTCTGATAACTACTTTTAT
TGTTATTAATATTATAATCGGTTTCGTCTTTATGTGGAATGCATTTTGTA
TGTCATTCTTAT
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protein sequence of SMED30006092-orf-1

>SMED30006092-orf-1 ID=SMED30006092-orf-1|Name=SMED30006092-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=347bp
MFTCNLIFHIFFIINFNEVFPCISRNVEDKSKNHKNFEEIQMFQTTLEYI
TKKTDETEPNIISDFQTYLANKYESLIKIEELQFLWEKLKEFSLQNGFLT
NTHKFRRSKKHFRILSPNISNMKTLAIEKIESYLQNEDKKFKLARASSNS
RSVSTQVVERSRKIYLAFAAGRIFNKQACLERTEIFCVFKYFQEMKVKFY
QVVPKAFLVKRCPKDCTCSQTHEKCLPRLVRNRTEYIIANNIVETNFVEE
TLTLNLVDHENCGCRSRCLNRKCISNFEFDYKSQADCSCKCKDNQKLCQK
ILKGYHNFTEADYLCILSGECLAPDCLGGQLSEELLYLRKCPQVPY*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000101muscle cell
PLANA:0000418head
PLANA:0003116parenchymal cell
Vocabulary: INTERPRO
TermDefinition
IPR029034Cystine-knot_cytokine
IPR000072PDGF/VEGF_dom
Vocabulary: cellular component
TermDefinition
GO:0016020membrane
Vocabulary: molecular function
TermDefinition
GO:0008083growth factor activity