RRM domain-containing protein

Overview


Name	RRM domain-containing protein
Smed ID	SMED30006085
Length (bp)	1616

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of RRM domain-containing protein (SMED30006085) t-SNE clustered cells

Violin plots show distribution of expression levels for RRM domain-containing protein (SMED30006085) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of RRM domain-containing protein (SMED30006085) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for RRM domain-containing protein (SMED30006085) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30006085

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 15

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
head region	SMED30006085	h1SMcG0010015	SmedASXL_011945	SmedAsxl_ww_GCZZ01	PMID:27034770 Currie et al., 2016
protonephridia	SMED30006085	h1SMcG0010015	dd_Smed_v4_4296_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30006085	h1SMcG0010015	dd_Smed_v4_4296_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30006085	h1SMcG0010015	dd_Smed_v4_4296_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neuron	SMED30006085	h1SMcG0010015	dd_Smed_v4_4296_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchyma	SMED30006085	h1SMcG0010015	dd_Smed_v4_4296_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
non-ciliated neuron	SMED30006085	h1SMcG0010015	dd_Smed_v4_4296_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cilated neuron	SMED30006085	h1SMcG0010015	dd_Smed_v4_4296_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30006085	h1SMcG0010015	Contig48719	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30006085	h1SMcG0010015	Contig48719	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
head region	SMED30006085	h1SMcG0010015	dd_Smed_v6_4296_0_1	dd_Smed_v6	PMID:28171748 Stückemann et al., 2017
pigment cell	SMED30006085	h1SMcG0010015	SMED30006085	smed_20140614	PMID:22884275 Lapan et al., 2012
head region	SMED30006085	h1SMcG0010015	OX_Smed_1.0.14077	ox_Smed_v2	PMID:24238224 Kao et al., 2013
protonephridia	SMED30006085	h1SMcG0010015	dd_Smed_v6_4296_0	dd_Smed_v6	PMID:29674432 Plass et al., 2018
cholinergic neuron	SMED30006085	h1SMcG0010015	dd_Smed_v6_4296_0	dd_Smed_v6	PMID:29674432 Plass et al., 2018

Note: Hover over icons to view figure legend

Homology

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Human
Match: RBPMS (RNA binding protein, mRNA processing factor [Source:HGNC Symbol;Acc:HGNC:19097])

HSP 1 Score: 97.0561 bits (240), Expect = 1.845e-22
Identity = 53/125 (42.40%), Postives = 71/125 (56.80%), Query Frame = 1

Query:  619 NDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKI 993
             ++VRTLF+SGLP+D KPRELYLLFR +KGY  S +K + K      PVGFV+F SR EAE A + L                              G++FDP+  Q +RLEFA++NTK+ + K+
Sbjct:   20 EEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALN-----------------------------GIRFDPEIPQTLRLEFAKANTKMAKNKL 110

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Human
Match: RBPMS (RNA binding protein, mRNA processing factor [Source:HGNC Symbol;Acc:HGNC:19097])

HSP 1 Score: 96.6709 bits (239), Expect = 2.059e-22
Identity = 53/125 (42.40%), Postives = 71/125 (56.80%), Query Frame = 1

Query:  619 NDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKI 993
             ++VRTLF+SGLP+D KPRELYLLFR +KGY  S +K + K      PVGFV+F SR EAE A + L                              G++FDP+  Q +RLEFA++NTK+ + K+
Sbjct:   20 EEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALN-----------------------------GIRFDPEIPQTLRLEFAKANTKMAKNKL 110

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Human
Match: RBPMS (RNA binding protein, mRNA processing factor [Source:HGNC Symbol;Acc:HGNC:19097])

HSP 1 Score: 96.6709 bits (239), Expect = 2.059e-22
Identity = 53/125 (42.40%), Postives = 71/125 (56.80%), Query Frame = 1

Query:  619 NDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKI 993
             ++VRTLF+SGLP+D KPRELYLLFR +KGY  S +K + K      PVGFV+F SR EAE A + L                              G++FDP+  Q +RLEFA++NTK+ + K+
Sbjct:   20 EEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALN-----------------------------GIRFDPEIPQTLRLEFAKANTKMAKNKL 110

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Human
Match: RBPMS (RNA binding protein, mRNA processing factor [Source:HGNC Symbol;Acc:HGNC:19097])

HSP 1 Score: 97.0561 bits (240), Expect = 2.527e-22
Identity = 53/125 (42.40%), Postives = 71/125 (56.80%), Query Frame = 1

Query:  619 NDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKI 993
             ++VRTLF+SGLP+D KPRELYLLFR +KGY  S +K + K      PVGFV+F SR EAE A + L                              G++FDP+  Q +RLEFA++NTK+ + K+
Sbjct:   20 EEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALN-----------------------------GIRFDPEIPQTLRLEFAKANTKMAKNKL 110

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Human
Match: RBPMS (RNA binding protein, mRNA processing factor [Source:HGNC Symbol;Acc:HGNC:19097])

HSP 1 Score: 96.2857 bits (238), Expect = 3.999e-22
Identity = 53/125 (42.40%), Postives = 71/125 (56.80%), Query Frame = 1

Query:  619 NDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKI 993
             ++VRTLF+SGLP+D KPRELYLLFR +KGY  S +K + K      PVGFV+F SR EAE A + L                              G++FDP+  Q +RLEFA++NTK+ + K+
Sbjct:   20 EEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALN-----------------------------GIRFDPEIPQTLRLEFAKANTKMAKNKL 110

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Celegans
Match: mec-8 (Mec-8 protein [Source:UniProtKB/TrEMBL;Acc:G5ECJ4])

HSP 1 Score: 125.176 bits (313), Expect = 8.214e-32
Identity = 70/140 (50.00%), Postives = 86/140 (61.43%), Query Frame = 1

Query:  571 SIDSLNTVGSNGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPK 990
            S++SLN+V S  T     QVRTLF+SGLPMD KPRELYLLFRG +GY  + LK + KNGK T+PVGFVTF S+++A+ A   LQ                             GV+FDP+ AQ +RLE A+SNTKV RPK
Sbjct:   13 SMESLNSVSSEATNP--SQVRTLFVSGLPMDAKPRELYLLFRGCRGYEGALLKMTSKNGKPTSPVGFVTFLSQQDAQDARKMLQ-----------------------------GVRFDPECAQVLRLELAKSNTKVARPK 121

[Close]

Query:  571 SIDSLNTVGSNGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPK 990
            S++SLN+V S  T     QVRTLF+SGLPMD KPRELYLLFRG +GY  + LK + KNGK T+PVGFVTF S+++A+ A   LQ                             GV+FDP+ AQ +RLE A+SNTKV RPK
Sbjct:   13 SMESLNSVSSEATNP--SQVRTLFVSGLPMDAKPRELYLLFRGCRGYEGALLKMTSKNGKPTSPVGFVTFLSQQDAQDARKMLQ-----------------------------GVRFDPECAQVLRLELAKSNTKVARPK 121

[Close]

Query:  571 SIDSLNTVGSNGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPK 990
            S++SLN+V S  T     QVRTLF+SGLPMD KPRELYLLFRG +GY  + LK + KNGK T+PVGFVTF S+++A+ A   LQ                             GV+FDP+ AQ +RLE A+SNTKV RPK
Sbjct:   13 SMESLNSVSSEATNP--SQVRTLFVSGLPMDAKPRELYLLFRGCRGYEGALLKMTSKNGKPTSPVGFVTFLSQQDAQDARKMLQ-----------------------------GVRFDPECAQVLRLELAKSNTKVARPK 121

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Fly
Match: cpo (gene:FBgn0263995 transcript:FBtr0330279)

HSP 1 Score: 132.109 bits (331), Expect = 1.743e-32
Identity = 69/145 (47.59%), Postives = 87/145 (60.00%), Query Frame = 1

Query:  556 MNISHSIDSLNTVGSNGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPK 990
            + +S S+DS+NT  +       ++VRTLF+SGLPMD KPRELYLLFR Y+GY  S LK + KNGK  +PVGFVTF +R  AE A  +LQ                             GV+FDPD  Q +RLEFA+SNTKV++PK
Sbjct:  423 LGLSQSMDSVNTASNE------EEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAGAEAAKQDLQ-----------------------------GVRFDPDMPQTIRLEFAKSNTKVSKPK 532

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Fly
Match: cpo (gene:FBgn0263995 transcript:FBtr0330280)

HSP 1 Score: 132.109 bits (331), Expect = 1.743e-32
Identity = 69/145 (47.59%), Postives = 87/145 (60.00%), Query Frame = 1

Query:  556 MNISHSIDSLNTVGSNGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPK 990
            + +S S+DS+NT  +       ++VRTLF+SGLPMD KPRELYLLFR Y+GY  S LK + KNGK  +PVGFVTF +R  AE A  +LQ                             GV+FDPD  Q +RLEFA+SNTKV++PK
Sbjct:  423 LGLSQSMDSVNTASNE------EEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAGAEAAKQDLQ-----------------------------GVRFDPDMPQTIRLEFAKSNTKVSKPK 532

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Fly
Match: cpo (gene:FBgn0263995 transcript:FBtr0330278)

HSP 1 Score: 132.109 bits (331), Expect = 1.743e-32
Identity = 69/145 (47.59%), Postives = 87/145 (60.00%), Query Frame = 1

Query:  556 MNISHSIDSLNTVGSNGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPK 990
            + +S S+DS+NT  +       ++VRTLF+SGLPMD KPRELYLLFR Y+GY  S LK + KNGK  +PVGFVTF +R  AE A  +LQ                             GV+FDPD  Q +RLEFA+SNTKV++PK
Sbjct:  423 LGLSQSMDSVNTASNE------EEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAGAEAAKQDLQ-----------------------------GVRFDPDMPQTIRLEFAKSNTKVSKPK 532

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Fly
Match: cpo (gene:FBgn0263995 transcript:FBtr0330276)

HSP 1 Score: 132.109 bits (331), Expect = 1.743e-32
Identity = 69/145 (47.59%), Postives = 87/145 (60.00%), Query Frame = 1

Query:  556 MNISHSIDSLNTVGSNGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPK 990
            + +S S+DS+NT  +       ++VRTLF+SGLPMD KPRELYLLFR Y+GY  S LK + KNGK  +PVGFVTF +R  AE A  +LQ                             GV+FDPD  Q +RLEFA+SNTKV++PK
Sbjct:  423 LGLSQSMDSVNTASNE------EEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAGAEAAKQDLQ-----------------------------GVRFDPDMPQTIRLEFAKSNTKVSKPK 532

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Fly
Match: cpo (gene:FBgn0263995 transcript:FBtr0330269)

HSP 1 Score: 132.109 bits (331), Expect = 1.743e-32
Identity = 69/145 (47.59%), Postives = 87/145 (60.00%), Query Frame = 1

Query:  556 MNISHSIDSLNTVGSNGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPK 990
            + +S S+DS+NT  +       ++VRTLF+SGLPMD KPRELYLLFR Y+GY  S LK + KNGK  +PVGFVTF +R  AE A  +LQ                             GV+FDPD  Q +RLEFA+SNTKV++PK
Sbjct:  423 LGLSQSMDSVNTASNE------EEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAGAEAAKQDLQ-----------------------------GVRFDPDMPQTIRLEFAKSNTKVSKPK 532

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: rbpms2a (RNA binding protein, mRNA processing factor 2a [Source:ZFIN;Acc:ZDB-GENE-040718-106])

HSP 1 Score: 102.449 bits (254), Expect = 1.118e-24
Identity = 56/132 (42.42%), Postives = 76/132 (57.58%), Query Frame = 1

Query:  598 SNGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKI 993
            +N +V + ++VRTLF+SGLP+D KPRELYLLFR +KGY  S +K + K      PVGFVTF SR  AE A + L                              G++FDP+S Q +RLEFA++NTK+ + K+
Sbjct:    9 TNTSVSLEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDSRSGAEAAKNALN-----------------------------GIRFDPESPQTLRLEFAKANTKMAKSKL 106

[Close]

Query:  598 SNGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKI 993
            +N +V + ++VRTLF+SGLP+D KPRELYLLFR +KGY  S +K + K      PVGFVTF SR  AE A + L                              G++FDP+S Q +RLEFA++NTK+ + K+
Sbjct:    9 TNTSVSLEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDSRSGAEAAKNALN-----------------------------GIRFDPESPQTLRLEFAKANTKMAKSKL 106

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: rbpms2b (RNA binding protein, mRNA processing factor 2b [Source:ZFIN;Acc:ZDB-GENE-040426-741])

HSP 1 Score: 100.138 bits (248), Expect = 4.547e-24
Identity = 56/131 (42.75%), Postives = 73/131 (55.73%), Query Frame = 1

Query:  601 NGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKI 993
            N  V + ++VRTLF+SGLP D KPRELYLLFR +KGY  S +K + K      PVGFVTF SR  AE A + L                              GV+FDP++ Q +RLEFA++NTK+ + K+
Sbjct:   10 NNNVSLEEEVRTLFVSGLPTDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDSRSGAEAAKNALN-----------------------------GVRFDPENPQTLRLEFAKANTKMAKSKL 106

[Close]

Query:  601 NGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKI 993
            N  V + ++VRTLF+SGLP D KPRELYLLFR +KGY  S +K + K      PVGFVTF SR  AE A + L                              GV+FDP++ Q +RLEFA++NTK+ + K+
Sbjct:   10 NNNVSLEEEVRTLFVSGLPTDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDSRSGAEAAKNALN-----------------------------GVRFDPENPQTLRLEFAKANTKMAKSKL 106

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: rbpms2b (RNA binding protein, mRNA processing factor 2b [Source:ZFIN;Acc:ZDB-GENE-040426-741])

HSP 1 Score: 99.7525 bits (247), Expect = 1.052e-23
Identity = 56/131 (42.75%), Postives = 73/131 (55.73%), Query Frame = 1

Query:  601 NGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKI 993
            N  V + ++VRTLF+SGLP D KPRELYLLFR +KGY  S +K + K      PVGFVTF SR  AE A + L                              GV+FDP++ Q +RLEFA++NTK+ + K+
Sbjct:   10 NNNVSLEEEVRTLFVSGLPTDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDSRSGAEAAKNALN-----------------------------GVRFDPENPQTLRLEFAKANTKMAKSKL 106

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: rbpms (RNA binding protein with multiple splicing [Source:NCBI gene;Acc:100038229])

HSP 1 Score: 97.8265 bits (242), Expect = 4.468e-23
Identity = 55/134 (41.04%), Postives = 75/134 (55.97%), Query Frame = 1

Query:  595 GSNGTVDI-NDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKI 993
            GS   + +  ++VRTLF+SGLP+D KPRELYLLFR +KGY  S +K + K      PVGFV+F SR EAE A + L                              G++FDP+  Q +RLEFA++NTK+ + K+
Sbjct:   10 GSQDEISLPEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALN-----------------------------GIRFDPEIPQTLRLEFAKANTKMAKSKL 109

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: rbpms (RNA binding protein with multiple splicing [Source:NCBI gene;Acc:100038229])

HSP 1 Score: 97.8265 bits (242), Expect = 7.091e-23
Identity = 55/134 (41.04%), Postives = 75/134 (55.97%), Query Frame = 1

Query:  595 GSNGTVDI-NDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKI 993
            GS   + +  ++VRTLF+SGLP+D KPRELYLLFR +KGY  S +K + K      PVGFV+F SR EAE A + L                              G++FDP+  Q +RLEFA++NTK+ + K+
Sbjct:   10 GSQDEISLPEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALN-----------------------------GIRFDPEIPQTLRLEFAKANTKMAKSKL 109

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: rbpms (RNA binding protein with multiple splicing [Source:NCBI gene;Acc:100038229])

HSP 1 Score: 97.8265 bits (242), Expect = 2.109e-22
Identity = 55/134 (41.04%), Postives = 75/134 (55.97%), Query Frame = 1

Query:  595 GSNGTVDI-NDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKI 993
            GS   + +  ++VRTLF+SGLP+D KPRELYLLFR +KGY  S +K + K      PVGFV+F SR EAE A + L                              G++FDP+  Q +RLEFA++NTK+ + K+
Sbjct:   10 GSQDEISLPEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALN-----------------------------GIRFDPEIPQTLRLEFAKANTKMAKSKL 109

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: RBPMS2 (RNA binding protein with multiple splicing 2 [Source:NCBI gene;Acc:100038109])

HSP 1 Score: 92.8189 bits (229), Expect = 4.124e-21
Identity = 52/122 (42.62%), Postives = 69/122 (56.56%), Query Frame = 1

Query:  628 VRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKI 993
            VRTLF+SGLP+D KPRELYLLFR +KGY  S +K + K      PVGFVTF +R  AE A + L                              G++FDP++ Q +RLEFA++NTK+ + K+
Sbjct:   17 VRTLFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDNRAGAEAAKNALN-----------------------------GIRFDPENPQTLRLEFAKANTKMAKNKL 104

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: RBPMS2 (RNA binding protein with multiple splicing 2 [Source:NCBI gene;Acc:100038109])

HSP 1 Score: 92.4337 bits (228), Expect = 4.626e-21
Identity = 52/122 (42.62%), Postives = 69/122 (56.56%), Query Frame = 1

Query:  628 VRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKI 993
            VRTLF+SGLP+D KPRELYLLFR +KGY  S +K + K      PVGFVTF +R  AE A + L                              G++FDP++ Q +RLEFA++NTK+ + K+
Sbjct:   19 VRTLFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDNRAGAEAAKNALN-----------------------------GIRFDPENPQTLRLEFAKANTKMAKNKL 106

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Mouse
Match: Rbpms (RNA binding protein gene with multiple splicing [Source:MGI Symbol;Acc:MGI:1334446])

HSP 1 Score: 96.6709 bits (239), Expect = 1.103e-22
Identity = 53/125 (42.40%), Postives = 71/125 (56.80%), Query Frame = 1

Query:  619 NDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKI 993
             ++VRTLF+SGLP+D KPRELYLLFR +KGY  S +K + K      PVGFV+F SR EAE A + L                              G++FDP+  Q +RLEFA++NTK+ + K+
Sbjct:   20 EEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALN-----------------------------GIRFDPEIPQTLRLEFAKANTKMAKNKL 110

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Mouse
Match: Rbpms (RNA binding protein gene with multiple splicing [Source:MGI Symbol;Acc:MGI:1334446])

HSP 1 Score: 96.2857 bits (238), Expect = 1.977e-22
Identity = 53/125 (42.40%), Postives = 71/125 (56.80%), Query Frame = 1

Query:  619 NDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKI 993
             ++VRTLF+SGLP+D KPRELYLLFR +KGY  S +K + K      PVGFV+F SR EAE A + L                              G++FDP+  Q +RLEFA++NTK+ + K+
Sbjct:   20 EEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALN-----------------------------GIRFDPEIPQTLRLEFAKANTKMAKNKL 110

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Mouse
Match: Rbpms (RNA binding protein gene with multiple splicing [Source:MGI Symbol;Acc:MGI:1334446])

HSP 1 Score: 96.2857 bits (238), Expect = 1.977e-22
Identity = 53/125 (42.40%), Postives = 71/125 (56.80%), Query Frame = 1

Query:  619 NDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKI 993
             ++VRTLF+SGLP+D KPRELYLLFR +KGY  S +K + K      PVGFV+F SR EAE A + L                              G++FDP+  Q +RLEFA++NTK+ + K+
Sbjct:   20 EEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALN-----------------------------GIRFDPEIPQTLRLEFAKANTKMAKNKL 110

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Mouse
Match: Rbpms (RNA binding protein gene with multiple splicing [Source:MGI Symbol;Acc:MGI:1334446])

HSP 1 Score: 96.2857 bits (238), Expect = 1.977e-22
Identity = 53/125 (42.40%), Postives = 71/125 (56.80%), Query Frame = 1

Query:  619 NDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKI 993
             ++VRTLF+SGLP+D KPRELYLLFR +KGY  S +K + K      PVGFV+F SR EAE A + L                              G++FDP+  Q +RLEFA++NTK+ + K+
Sbjct:   20 EEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALN-----------------------------GIRFDPEIPQTLRLEFAKANTKMAKNKL 110

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Mouse
Match: Rbpms (RNA binding protein gene with multiple splicing [Source:MGI Symbol;Acc:MGI:1334446])

HSP 1 Score: 94.3597 bits (233), Expect = 2.798e-22
Identity = 55/131 (41.98%), Postives = 71/131 (54.20%), Query Frame = 1

Query:  601 NGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKI 993
            NG       VRTLF+SGLP+D KPRELYLLFR +KGY  S +K + K      PVGFV+F SR EAE A + L                              G++FDP+  Q +RLEFA++NTK+ + K+
Sbjct:   12 NGKRCCVSMVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALN-----------------------------GIRFDPEIPQTLRLEFAKANTKMAKNKL 108

[Close]

BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q01617|CPO_DROME (Protein couch potato OS=Drosophila melanogaster OX=7227 GN=cpo PE=2 SV=4)

HSP 1 Score: 132.109 bits (331), Expect = 1.748e-31
Identity = 69/145 (47.59%), Postives = 87/145 (60.00%), Query Frame = 1

Query:  556 MNISHSIDSLNTVGSNGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPK 990
            + +S S+DS+NT  +       ++VRTLF+SGLPMD KPRELYLLFR Y+GY  S LK + KNGK  +PVGFVTF +R  AE A  +LQ                             GV+FDPD  Q +RLEFA+SNTKV++PK
Sbjct:  423 LGLSQSMDSVNTASNE------EEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAGAEAAKQDLQ-----------------------------GVRFDPDMPQTIRLEFAKSNTKVSKPK 532

[Close]

BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q6DH13|RBP2A_DANRE (RNA-binding protein, mRNA-processing factor 2a OS=Danio rerio OX=7955 GN=rbpms2a PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 8.440e-24
Identity = 56/132 (42.42%), Postives = 76/132 (57.58%), Query Frame = 1

Query:  598 SNGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKI 993
            +N +V + ++VRTLF+SGLP+D KPRELYLLFR +KGY  S +K + K      PVGFVTF SR  AE A + L                              G++FDP+S Q +RLEFA++NTK+ + K+
Sbjct:    9 TNTSVSLEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDSRSGAEAAKNALN-----------------------------GIRFDPESPQTLRLEFAKANTKMAKSKL 106

[Close]

BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9W6I1|RBPS2_CHICK (RNA-binding protein with multiple splicing 2 OS=Gallus gallus OX=9031 GN=RBPMS2 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.172e-23
Identity = 56/136 (41.18%), Postives = 78/136 (57.35%), Query Frame = 1

Query:  586 NTVGSNGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKI 993
            +T  +NG  ++ ++VRTLF+SGLP+D KPRELYLLFR +KGY  S +K + K      PVGFVTF SR  AE A + L                              G++FDP++ Q +RLEFA++NTK+ + K+
Sbjct:    7 DTEHTNGGGNVEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDSRAGAEAAKNALN-----------------------------GIRFDPENPQTLRLEFAKANTKMAKSKL 108

[Close]

BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q93062|RBPMS_HUMAN (RNA-binding protein with multiple splicing OS=Homo sapiens OX=9606 GN=RBPMS PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.890e-22
Identity = 53/125 (42.40%), Postives = 71/125 (56.80%), Query Frame = 1

Query:  619 NDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKI 993
             ++VRTLF+SGLP+D KPRELYLLFR +KGY  S +K + K      PVGFV+F SR EAE A + L                              G++FDP+  Q +RLEFA++NTK+ + K+
Sbjct:   20 EEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALN-----------------------------GIRFDPEIPQTLRLEFAKANTKMAKNKL 110

[Close]

BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9WVB0|RBPMS_MOUSE (RNA-binding protein with multiple splicing OS=Mus musculus OX=10090 GN=Rbpms PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.383e-21
Identity = 53/125 (42.40%), Postives = 71/125 (56.80%), Query Frame = 1

Query:  619 NDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKI 993
             ++VRTLF+SGLP+D KPRELYLLFR +KGY  S +K + K      PVGFV+F SR EAE A + L                              G++FDP+  Q +RLEFA++NTK+ + K+
Sbjct:   20 EEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALN-----------------------------GIRFDPEIPQTLRLEFAKANTKMAKNKL 110

[Close]

BLAST of RRM domain-containing protein vs. TrEMBL
Match: A0A4Z2DUC2 (Protein couch potato OS=Schistosoma japonicum OX=6182 GN=EWB00_005100 PE=4 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.007e-48
Identity = 108/227 (47.58%), Postives = 135/227 (59.47%), Query Frame = 1

Query:  526 VGVSLSDENMMNISHSIDSLNTVGSNGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKIGLFSLSQPFFNAAL--PPHAIIQQFPGFDHGSLFSADTSWANLGYDNAILTATGILPSATPNLHPSLLQAL 1200
            +G +L++++MM +S SIDS++TVG+N       QVRTLF+SGLP+D KPRELYLLFR +KGY+SSTLKP+GKNGKLTAPVGFVTF SRE+AE AM++LQ                             GVKFDPD  Q MRLEFARSNTKVT+PKI   ++   F N +   P H  + Q+             S  NLG     + +TG L     NL PS+   L
Sbjct:   59 LGANLNEDSMMILSQSIDSIHTVGTNNGEGTEHQVRTLFVSGLPLDAKPRELYLLFRSFKGYLSSTLKPAGKNGKLTAPVGFVTFESREQAEEAMTKLQ-----------------------------GVKFDPDGNQHMRLEFARSNTKVTKPKI---TIPVGFSNVSSNNPHHNGLNQY------------NSLTNLGSCTTNMMSTGNLTGMVANLQPSIFAQL 241

[Close]

BLAST of RRM domain-containing protein vs. TrEMBL
Match: A0A0X3PHY3 (Protein couch potato OS=Schistocephalus solidus OX=70667 GN=CPO PE=4 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 4.160e-47
Identity = 115/260 (44.23%), Postives = 147/260 (56.54%), Query Frame = 1

Query:  532 VSLSDENMMNISHSIDSLNTVG-SNGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKIGLFSLSQPFF------------------NAALP---PHAIIQQFPGFDHG-SLFSADTS---WAN--LGYDNA-----ILTATGILPSATPNLHPSLLQALMPQN 1212
             +L++E+MM +S SIDS++T+G S G+  ++ QVRTLF+SGLP+DTK RELYLLFRG+KGY+SSTLKP+GKNGKLTAPVGFVTF SRE+AE A+S+LQ                             GVKFDPD  Q MRLEFARSNTKVT+PK G   +  PF                     A P       +    GFD   +L +A  +   W N   GYD +     +  A G+ P+A   L  S  +A++P N
Sbjct:   71 ANLTEESMMVLSQSIDSIHTMGTSGGSESLDHQVRTLFVSGLPLDTKSRELYLLFRGFKGYLSSTLKPAGKNGKLTAPVGFVTFESREQAEKALSKLQ-----------------------------GVKFDPDCNQHMRLEFARSNTKVTKPKCGGLPIGFPFAPMGSSSSAAAANLSPIPQQTAFPGVVTSTFLPHLAGFDPTMALIAAQDAANQWGNPAFGYDTSGLFSTVAGAQGLAPAAL--LQASNFRAILPMN 299

[Close]

BLAST of RRM domain-containing protein vs. TrEMBL
Match: A0A564XZG0 (RRM domain-containing protein (Fragment) OS=Hymenolepis diminuta OX=6216 GN=WMSIL1_LOCUS1113 PE=4 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 9.097e-47
Identity = 117/279 (41.94%), Postives = 159/279 (56.99%), Query Frame = 1

Query:  532 VSLSDENMMNISHSIDSLNTVGSN-GTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPK-----------IGLFSL--------------SQPFFNAALPPHAIIQQFPGFD--HGSLFSAD--TSWA---NLGYDNAILTATGILPSATPNLHPSLLQALMPQNGLNGGVVSTNCLPSQILNQ 1269
            V+L+D++MM +S S+D+L+TVG+  G+  ++ QVRTLF+SGLP+DTK RELYLLFR +KGY+SSTLKP+GKNGKLTAPVGFVTF +RE+AE A++ELQ                             G+KFDP+  Q MRLEFARSNTKVT+PK           +  FS                Q  F   LPP+  +   PGFD    +L +A+  + WA   + GYD + L A+   P+    L  S  + ++P N  NG   ++    +Q+ NQ
Sbjct:  156 VNLNDDSMMVLSQSVDALHTVGTAPGSDALDHQVRTLFVSGLPLDTKSRELYLLFRSFKGYLSSTLKPAGKNGKLTAPVGFVTFETREQAEHALNELQ-----------------------------GIKFDPEGNQHMRLEFARSNTKVTKPKWPPGFPLVPGAVNGFSFLPAAGNPAGLSPIGQQAGFQGVLPPN-FLPHLPGFDPTAMALIAANDASQWAANPHFGYDTSGLFASFGAPATL--LQASNFRPILPMNA-NGTTPTSQSGSNQVANQ 401

[Close]

BLAST of RRM domain-containing protein vs. TrEMBL
Match: A0A158QDS5 (RRM domain-containing protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS3609 PE=4 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.533e-46
Identity = 117/279 (41.94%), Postives = 159/279 (56.99%), Query Frame = 1

Query:  532 VSLSDENMMNISHSIDSLNTVGSN-GTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPK-----------IGLFSL--------------SQPFFNAALPPHAIIQQFPGFD--HGSLFSAD--TSWA---NLGYDNAILTATGILPSATPNLHPSLLQALMPQNGLNGGVVSTNCLPSQILNQ 1269
            V+L+D++MM +S S+D+L+TVG+  G+  ++ QVRTLF+SGLP+DTK RELYLLFR +KGY+SSTLKP+GKNGKLTAPVGFVTF +RE+AE A++ELQ                             G+KFDP+  Q MRLEFARSNTKVT+PK           +  FS                Q  F   LPP+  +   PGFD    +L +A+  + WA   + GYD + L A+   P+    L  S  + ++P N  NG   ++    +Q+ NQ
Sbjct:  188 VNLNDDSMMVLSQSVDALHTVGTAPGSDALDHQVRTLFVSGLPLDTKSRELYLLFRSFKGYLSSTLKPAGKNGKLTAPVGFVTFETREQAEHALNELQ-----------------------------GIKFDPEGNQHMRLEFARSNTKVTKPKWPPGFPLVPGAVNGFSFLPAAGNPAGLSPIGQQAGFQGVLPPN-FLPHLPGFDPTAMALIAANDASQWAANPHFGYDTSGLFASFGAPATL--LQASNFRPILPMNA-NGTTPTSQSGSNQVANQ 433

[Close]

BLAST of RRM domain-containing protein vs. TrEMBL
Match: A0A094ZI94 (Protein couch potato OS=Schistosoma haematobium OX=6185 GN=MS3_00747 PE=4 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.060e-45
Identity = 103/225 (45.78%), Postives = 132/225 (58.67%), Query Frame = 1

Query:  526 VGVSLSDENMMNISHSIDSLNTVGSNGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKIGLFSLSQPFFNAALPPHAIIQQFPGFDHGSLFSADTSWANLGYDNAILTATGILPSATPNLHPSLLQAL 1200
            +  +L++++MM +S SIDS++TVG+N       QVRTLF+SGLP+D KPRELYLLFR +KGY+SSTLKP+GKNGKLTAPVGFVTF SRE+AE AM++LQ                             GVKFDPD  Q MRLEFARSNTKVT+PK    ++   F N  +             H +  +   S +NLG     + +TG +     NL PS+   L
Sbjct:   56 LNANLNEDSMMILSQSIDSIHTVGTNNGEGTEHQVRTLFVSGLPLDAKPRELYLLFRSFKGYLSSTLKPAGKNGKLTAPVGFVTFESREQAEEAMAKLQ-----------------------------GVKFDPDGNQHMRLEFARSNTKVTKPKT---TIPVGFGNIGM----------NNPHENGLNQHNSLSNLGTCPTNMISTGNISGMVANLQPSIFAQL 238

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: rbpms2b (RNA-binding protein with multiple splicing 2-like [Source:NCBI gene;Acc:103022941])

HSP 1 Score: 100.138 bits (248), Expect = 5.130e-24
Identity = 55/131 (41.98%), Postives = 74/131 (56.49%), Query Frame = 1

Query:  601 NGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKI 993
            N T+ ++++VRTLF+SGLP D KPRELYLLFR +KGY  S +K + K      PVGFVTF  R  AE A + L                              GV+FDP++ Q +RLEFA++NTK+ + K+
Sbjct:   11 NNTISLDEEVRTLFVSGLPTDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDCRSGAEAAKNALN-----------------------------GVRFDPENPQTLRLEFAKANTKMAKSKL 107

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: rbpms2b (RNA-binding protein with multiple splicing 2-like [Source:NCBI gene;Acc:103022941])

HSP 1 Score: 100.138 bits (248), Expect = 7.265e-24
Identity = 55/131 (41.98%), Postives = 74/131 (56.49%), Query Frame = 1

Query:  601 NGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKI 993
            N T+ ++++VRTLF+SGLP D KPRELYLLFR +KGY  S +K + K      PVGFVTF  R  AE A + L                              GV+FDP++ Q +RLEFA++NTK+ + K+
Sbjct:   11 NNTISLDEEVRTLFVSGLPTDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDCRSGAEAAKNALN-----------------------------GVRFDPENPQTLRLEFAKANTKMAKSKL 107

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: rbpms2b (RNA-binding protein with multiple splicing 2-like [Source:NCBI gene;Acc:103022941])

HSP 1 Score: 100.138 bits (248), Expect = 7.265e-24
Identity = 55/131 (41.98%), Postives = 74/131 (56.49%), Query Frame = 1

Query:  601 NGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKI 993
            N T+ ++++VRTLF+SGLP D KPRELYLLFR +KGY  S +K + K      PVGFVTF  R  AE A + L                              GV+FDP++ Q +RLEFA++NTK+ + K+
Sbjct:   11 NNTISLDEEVRTLFVSGLPTDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDCRSGAEAAKNALN-----------------------------GVRFDPENPQTLRLEFAKANTKMAKSKL 107

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: rbpms2a (RNA-binding protein with multiple splicing 2 [Source:NCBI gene;Acc:103041081])

HSP 1 Score: 99.7525 bits (247), Expect = 1.021e-23
Identity = 55/131 (41.98%), Postives = 74/131 (56.49%), Query Frame = 1

Query:  601 NGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKI 993
            N  V + ++VRTLF+SGLP+D KPRELYLLFR +KGY  S +K + K      PVGFVTF SR  AE A + L                              G++FDP++ Q +RLEFA++NTK+ + K+
Sbjct:   10 NNNVSLEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDSRSGAEAAKNALN-----------------------------GIRFDPENPQTLRLEFAKANTKMAKSKL 106

[Close]

Query:  601 NGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKI 993
            N  V + ++VRTLF+SGLP+D KPRELYLLFR +KGY  S +K + K      PVGFVTF SR  AE A + L                              G++FDP++ Q +RLEFA++NTK+ + K+
Sbjct:   10 NNNVSLEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDSRSGAEAAKNALN-----------------------------GIRFDPENPQTLRLEFAKANTKMAKSKL 106

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000003641.1 (pep scaffold:Pmarinus_7.0:GL480715:5373:16108:1 gene:ENSPMAG00000003321.1 transcript:ENSPMAT00000003641.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 100.523 bits (249), Expect = 5.947e-25
Identity = 64/162 (39.51%), Postives = 83/162 (51.23%), Query Frame = 1

Query:  625 QVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKIGLFSLSQPFFNAALPPHAIIQQFPGFDHGSLFSADTSWA 1110
            QVRTLF+SGLP+D KPRELYLLFR +KGY  S +  + K      PVGFVTF SR +AE A   L                              GV+FDP+S Q +RLEFAR+NTK +R +  L +   P  + AL  H +++         + S   +WA
Sbjct:    1 QVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLILVTSKQ-----PVGFVTFYSRAQAEDAKVSLN-----------------------------GVRFDPESPQTLRLEFARANTKTSRNR--LLATPNPMPHPALGAHLVLRDPFDLSGAPMLSPADTWA 126

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Sea Lamprey
Match: rbpms2a (RNA binding protein, mRNA processing factor 2a [Source:ZFIN;Acc:ZDB-GENE-040718-106])

HSP 1 Score: 46.2098 bits (108), Expect = 1.985e-6
Identity = 33/97 (34.02%), Postives = 45/97 (46.39%), Query Frame = 1

Query:  760 PVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKIGLFSLSQPFFNAALPPHAI 1050
            PVGF  F SR EAE A + L                              G++FDPD  Q +RLEFA++NTK+ + K+ L + +    + AL PH I
Sbjct:    2 PVGFAMFDSRSEAEAAKNALN-----------------------------GIRFDPDIPQTLRLEFAKANTKMAKNKL-LGTPNPTLPHPALGPHFI 68

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Nematostella
Match: EDO49830 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7REQ1])

HSP 1 Score: 97.4413 bits (241), Expect = 1.532e-24
Identity = 56/120 (46.67%), Postives = 70/120 (58.33%), Query Frame = 1

Query:  628 VRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRP 987
            VRTLF+SGLP+D KPRE+YLLFR +KGY  S LK + K      PV FVTF +++ A  A SELQ                             GV+FDPD +Q +RLEFA+SNTKV++P
Sbjct:    1 VRTLFVSGLPLDVKPREVYLLFRSFKGYEGSLLKLTDKQ-----PVAFVTFENKDCASDAKSELQ-----------------------------GVQFDPDVSQTLRLEFAKSNTKVSKP 86

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Medaka
Match: rbpms2a (RNA-binding protein with multiple splicing 2 [Source:NCBI gene;Acc:101164709])

HSP 1 Score: 102.834 bits (255), Expect = 3.064e-24
Identity = 64/153 (41.83%), Postives = 83/153 (54.25%), Query Frame = 1

Query:  601 NGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKIGLFSLSQPF-FNAALPPHAIIQ 1056
            N  V I ++VRTLF+SGLP+D KPRELYLLFR +KGY  S +K + K      PVGFVTF SR  AE A + L                              G++FDP+S Q +RLEFA++NTK+ + K  L +   P   + AL PH I +
Sbjct:   75 NNNVSIEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDSRSGAEAAKNALN-----------------------------GIRFDPESPQTLRLEFAKANTKMAKSK--LMATPNPTNIHPALGPHFIAR 191

[Close]

Query:  601 NGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKIGLFSLSQPF-FNAALPPHAIIQ 1056
            N  V I ++VRTLF+SGLP+D KPRELYLLFR +KGY  S +K + K      PVGFVTF SR  AE A + L                              G++FDP+S Q +RLEFA++NTK+ + K  L +   P   + AL PH I +
Sbjct:   75 NNNVSIEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDSRSGAEAAKNALN-----------------------------GIRFDPESPQTLRLEFAKANTKMAKSK--LMATPNPTNIHPALGPHFIAR 191

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000005176.2 (RNA binding protein, mRNA processing factor [Source:NCBI gene;Acc:101164593])

HSP 1 Score: 96.6709 bits (239), Expect = 1.051e-22
Identity = 54/125 (43.20%), Postives = 71/125 (56.80%), Query Frame = 1

Query:  619 NDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKI 993
             ++VRTLF+SGLP+D KPRELYLLFR +KGY  S +K + K      PVGFV+F SR EAE A + L                              GV+FDP+  Q +RLEFA++NTK+ + K+
Sbjct:   19 EEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALN-----------------------------GVRFDPEIPQTLRLEFAKANTKMAKNKL 109

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000005173.2 (RNA binding protein, mRNA processing factor [Source:NCBI gene;Acc:101164593])

HSP 1 Score: 95.1301 bits (235), Expect = 4.466e-22
Identity = 54/123 (43.90%), Postives = 70/123 (56.91%), Query Frame = 1

Query:  625 QVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKI 993
            +VRTLF+SGLP+D KPRELYLLFR +KGY  S +K + K      PVGFV+F SR EAE A + L                              GV+FDP+  Q +RLEFA++NTK+ + K+
Sbjct:   32 KVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALN-----------------------------GVRFDPEIPQTLRLEFAKANTKMAKNKL 120

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Medaka
Match: rbpms2a (RNA-binding protein with multiple splicing 2 [Source:NCBI gene;Acc:101164709])

HSP 1 Score: 81.6481 bits (200), Expect = 6.182e-18
Identity = 42/73 (57.53%), Postives = 50/73 (68.49%), Query Frame = 1

Query:  601 NGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSEL 819
            N  V I ++VRTLF+SGLP+D KPRELYLLFR +KGY  S +K + K      PVGFVTF SR  AE A + L
Sbjct:   75 NNNVSIEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVTFDSRSGAEAAKNAL 142

[Close]

BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000064331.1 (SMESG000064331.1)

HSP 1 Score: 672.159 bits (1733), Expect = 0.000e+0
Identity = 338/367 (92.10%), Postives = 338/367 (92.10%), Query Frame = 1

Query:  331 MKCINFSSKSLNLCDAENRLLNQSLMNSKSNSKPDNQFCSPGVPNYQMKPYSRCENEKSKPMLPTVGVSLSDENMMNISHSIDSLNTVGSNGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKIGLFSLSQPFFNAALPPHAIIQQFPGFDHGSLFSADTSWANLGYDNAILTATGILPSATPNLHPSLLQALMPQNGLNGGVVSTNCLPSQILNQNIITSQSSLTNPYLGSPASSINGATISYPGLVPLGFSTVGLLSYNALMKDLVNN 1431
            MKCINFSSKSLNLCDAENRLLNQSLMNSKSNSKPDNQFCSPGVPNYQMKPYSRCENEKSKPMLPTVGVSLSDENMMNISHSIDSLNTVGSNGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQ                             GVKFDPDSAQQMRLEFARSNTKVTRPKIGLFSLSQPFFNAALPPHAIIQQFPGFDHGSLFSADTSWANLGYDNAILTATGILPSATPNLHPSLLQALMPQNGLNGGVVSTNCLPSQILNQNIITSQSSLTNPYLGSPASSINGATISYPGLVPLGFSTVGLLSYNALMKDLVNN
Sbjct:    1 MKCINFSSKSLNLCDAENRLLNQSLMNSKSNSKPDNQFCSPGVPNYQMKPYSRCENEKSKPMLPTVGVSLSDENMMNISHSIDSLNTVGSNGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQ-----------------------------GVKFDPDSAQQMRLEFARSNTKVTRPKIGLFSLSQPFFNAALPPHAIIQQFPGFDHGSLFSADTSWANLGYDNAILTATGILPSATPNLHPSLLQALMPQNGLNGGVVSTNCLPSQILNQNIITSQSSLTNPYLGSPASSINGATISYPGLVPLGFSTVGLLSYNALMKDLVNN 338

[Close]

BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000064331.1 (SMESG000064331.1)

HSP 1 Score: 623.239 bits (1606), Expect = 0.000e+0
Identity = 313/342 (91.52%), Postives = 313/342 (91.52%), Query Frame = 1

Query:  406 MNSKSNSKPDNQFCSPGVPNYQMKPYSRCENEKSKPMLPTVGVSLSDENMMNISHSIDSLNTVGSNGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKIGLFSLSQPFFNAALPPHAIIQQFPGFDHGSLFSADTSWANLGYDNAILTATGILPSATPNLHPSLLQALMPQNGLNGGVVSTNCLPSQILNQNIITSQSSLTNPYLGSPASSINGATISYPGLVPLGFSTVGLLSYNALMKDLVNN 1431
            MNSKSNSKPDNQFCSPGVPNYQMKPYSRCENEKSKPMLPTVGVSLSDENMMNISHSIDSLNTVGSNGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQ                             GVKFDPDSAQQMRLEFARSNTKVTRPKIGLFSLSQPFFNAALPPHAIIQQFPGFDHGSLFSADTSWANLGYDNAILTATGILPSATPNLHPSLLQALMPQNGLNGGVVSTNCLPSQILNQNIITSQSSLTNPYLGSPASSINGATISYPGLVPLGFSTVGLLSYNALMKDLVNN
Sbjct:    1 MNSKSNSKPDNQFCSPGVPNYQMKPYSRCENEKSKPMLPTVGVSLSDENMMNISHSIDSLNTVGSNGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQ-----------------------------GVKFDPDSAQQMRLEFARSNTKVTRPKIGLFSLSQPFFNAALPPHAIIQQFPGFDHGSLFSADTSWANLGYDNAILTATGILPSATPNLHPSLLQALMPQNGLNGGVVSTNCLPSQILNQNIITSQSSLTNPYLGSPASSINGATISYPGLVPLGFSTVGLLSYNALMKDLVNN 313

[Close]

BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000064331.1 (SMESG000064331.1)

HSP 1 Score: 300.056 bits (767), Expect = 1.452e-100
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1

Query:  406 MNSKSNSKPDNQFCSPGVPNYQMKPYSRCENEKSKPMLPTVGVSLSDENMMNISHSIDSLNTVGSNGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKT 843
            MNSKSNSKPDNQFCSPGVPNYQMKPYSRCENEKSKPMLPTVGVSLSDENMMNISHSIDSLNTVGSNGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKT
Sbjct:    1 MNSKSNSKPDNQFCSPGVPNYQMKPYSRCENEKSKPMLPTVGVSLSDENMMNISHSIDSLNTVGSNGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKT 146

[Close]

BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000071928.1 (SMESG000071928.1)

HSP 1 Score: 130.183 bits (326), Expect = 7.394e-34
Identity = 107/296 (36.15%), Postives = 144/296 (48.65%), Query Frame = 1

Query:  565 SHSIDSLNTVGSNGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPDSAQQMRLEFARSNTKVTRPKIGLFSLSQPFFNAALPPHAIIQQFPGFDHGSLFSADTSWANLGYDN--AILTATGILPSATPNLHPSLLQALMPQNGLNGGVVSTNC--------LPSQILNQNIITSQSSLTNPYLGSPASSINGATISYPGLVPLGFSTVGLLSYNALMKDL 1422
            S+S D+    G +     N++VRT+F+SGLPMD K RELYLLFR +KG+ ++TLKP GKNGK TAPVGFVTF +R +AE A+ +L+                             G+KFDPDS Q MRLEFAR+NTK+ + K+    +     N  L   +I          +L ++D +   LGYD   A    +   P            AL+P NG        NC         P+ +LN   +T   SL+ P++G P S + G TIS   + P   S  GLL       DL
Sbjct:   24 SNSTDNNGNHGDSDASSANEEVRTIFVSGLPMDAKQRELYLLFRSFKGFQTATLKPPGKNGKPTAPVGFVTFETRNQAESAIEKLE-----------------------------GIKFDPDSDQLMRLEFARTNTKMLKNKMCNSHIYNSGLNQQLSAGSI--------DANLLNSDMNLF-LGYDGRLAFFAQSAFSPFGP---------ALLPFNGTT--FRPPNCSFAPIAVAAPNGLLN---VTGTHSLS-PFIG-PQSGLLGETISQVLMHP---SQNGLLYVQPFSIDL 262

[Close]

BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000010632.1 (SMESG000010632.1)

HSP 1 Score: 48.1358 bits (113), Expect = 9.083e-6
Identity = 35/137 (25.55%), Postives = 65/137 (47.45%), Query Frame = 1

Query:  472 MKPYSRCENEKSKPMLPTVGVSLSDENMMNISHSIDSLNTVGSNGTVDINDQVRTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTFSSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQ 882
            +K Y+   +   K ++  + +S++ E++  IS+ + + N              R +++  LP+  K  EL  LF+ Y   IS  L     N      +GFV ++S+EEAE A++E+      K LC   ++   +C+
Sbjct:   56 IKDYNYLNSNGEKLLITFLTISMAKEHLKIISNYLQNNNLDSIKIQFYEAKDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNN---SIGFVRYTSKEEAERAINEIN----KKNLCFLNNERTVRCE 185

The following BLAST results are available for this feature:

BLAST of RRM domain-containing protein vs. Ensembl Human
BLAST of RRM domain-containing protein vs. Ensembl Celegans
BLAST of RRM domain-containing protein vs. Ensembl Fly
BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
BLAST of RRM domain-containing protein vs. Ensembl Xenopus
BLAST of RRM domain-containing protein vs. Ensembl Mouse
BLAST of RRM domain-containing protein vs. UniProt/SwissProt
BLAST of RRM domain-containing protein vs. TrEMBL
BLAST of RRM domain-containing protein vs. Ensembl Cavefish
BLAST of RRM domain-containing protein vs. Ensembl Sea Lamprey
BLAST of RRM domain-containing protein vs. Ensembl Yeast
BLAST of RRM domain-containing protein vs. Ensembl Nematostella
BLAST of RRM domain-containing protein vs. Ensembl Medaka
BLAST of RRM domain-containing protein vs. Planmine SMEST

BLAST of RRM domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
RBPMS	1.845e-22	42.40	RNA binding protein, mRNA processing factor [Sourc...	[more]
RBPMS	2.059e-22	42.40	RNA binding protein, mRNA processing factor [Sourc...	[more]
RBPMS	2.059e-22	42.40	RNA binding protein, mRNA processing factor [Sourc...	[more]
RBPMS	2.527e-22	42.40	RNA binding protein, mRNA processing factor [Sourc...	[more]
RBPMS	3.999e-22	42.40	RNA binding protein, mRNA processing factor [Sourc...	[more]

BLAST of RRM domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 3


Match Name	E-value	Identity	Description
mec-8	8.214e-32	50.00	Mec-8 protein [Source:UniProtKB/TrEMBL;Acc:G5ECJ4...	[more]
mec-8	8.214e-32	50.00	Mec-8 protein [Source:UniProtKB/TrEMBL;Acc:G5ECJ4...	[more]
mec-8	8.214e-32	50.00	Mec-8 protein [Source:UniProtKB/TrEMBL;Acc:G5ECJ4...	[more]

BLAST of RRM domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
cpo	1.743e-32	47.59	gene:FBgn0263995 transcript:FBtr0330279	[more]
cpo	1.743e-32	47.59	gene:FBgn0263995 transcript:FBtr0330280	[more]
cpo	1.743e-32	47.59	gene:FBgn0263995 transcript:FBtr0330278	[more]
cpo	1.743e-32	47.59	gene:FBgn0263995 transcript:FBtr0330276	[more]
cpo	1.743e-32	47.59	gene:FBgn0263995 transcript:FBtr0330269	[more]

BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rbpms2a	1.118e-24	42.42	RNA binding protein, mRNA processing factor 2a [So...	[more]
rbpms2a	1.118e-24	42.42	RNA binding protein, mRNA processing factor 2a [So...	[more]
rbpms2b	4.547e-24	42.75	RNA binding protein, mRNA processing factor 2b [So...	[more]
rbpms2b	4.547e-24	42.75	RNA binding protein, mRNA processing factor 2b [So...	[more]
rbpms2b	1.052e-23	42.75	RNA binding protein, mRNA processing factor 2b [So...	[more]

BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rbpms	4.468e-23	41.04	RNA binding protein with multiple splicing [Source...	[more]
rbpms	7.091e-23	41.04	RNA binding protein with multiple splicing [Source...	[more]
rbpms	2.109e-22	41.04	RNA binding protein with multiple splicing [Source...	[more]
RBPMS2	4.124e-21	42.62	RNA binding protein with multiple splicing 2 [Sour...	[more]
RBPMS2	4.626e-21	42.62	RNA binding protein with multiple splicing 2 [Sour...	[more]

BLAST of RRM domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Rbpms	1.103e-22	42.40	RNA binding protein gene with multiple splicing [S...	[more]
Rbpms	1.977e-22	42.40	RNA binding protein gene with multiple splicing [S...	[more]
Rbpms	1.977e-22	42.40	RNA binding protein gene with multiple splicing [S...	[more]
Rbpms	1.977e-22	42.40	RNA binding protein gene with multiple splicing [S...	[more]
Rbpms	2.798e-22	41.98	RNA binding protein gene with multiple splicing [S...	[more]

BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q01617\|CPO_DROME	1.748e-31	47.59	Protein couch potato OS=Drosophila melanogaster OX...	[more]
sp\|Q6DH13\|RBP2A_DANRE	8.440e-24	42.42	RNA-binding protein, mRNA-processing factor 2a OS=...	[more]
sp\|Q9W6I1\|RBPS2_CHICK	1.172e-23	41.18	RNA-binding protein with multiple splicing 2 OS=Ga...	[more]
sp\|Q93062\|RBPMS_HUMAN	9.890e-22	42.40	RNA-binding protein with multiple splicing OS=Homo...	[more]
sp\|Q9WVB0\|RBPMS_MOUSE	1.383e-21	42.40	RNA-binding protein with multiple splicing OS=Mus ...	[more]

BLAST of RRM domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A4Z2DUC2	1.007e-48	47.58	Protein couch potato OS=Schistosoma japonicum OX=6...	[more]
A0A0X3PHY3	4.160e-47	44.23	Protein couch potato OS=Schistocephalus solidus OX...	[more]
A0A564XZG0	9.097e-47	41.94	RRM domain-containing protein (Fragment) OS=Hymeno...	[more]
A0A158QDS5	1.533e-46	41.94	RRM domain-containing protein OS=Hymenolepis dimin...	[more]
A0A094ZI94	1.060e-45	45.78	Protein couch potato OS=Schistosoma haematobium OX...	[more]

BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rbpms2b	5.130e-24	41.98	RNA-binding protein with multiple splicing 2-like ...	[more]
rbpms2b	7.265e-24	41.98	RNA-binding protein with multiple splicing 2-like ...	[more]
rbpms2b	7.265e-24	41.98	RNA-binding protein with multiple splicing 2-like ...	[more]
rbpms2a	1.021e-23	41.98	RNA-binding protein with multiple splicing 2 [Sour...	[more]
rbpms2a	1.021e-23	41.98	RNA-binding protein with multiple splicing 2 [Sour...	[more]

BLAST of RRM domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 2


Match Name	E-value	Identity	Description
ENSPMAT00000003641.1	5.947e-25	39.51	pep scaffold:Pmarinus_7.0:GL480715:5373:16108:1 ge...	[more]
rbpms2a	1.985e-6	34.02	RNA binding protein, mRNA processing factor 2a [So...	[more]

BLAST of RRM domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of RRM domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1


Match Name	E-value	Identity	Description
EDO49830	1.532e-24	46.67	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of RRM domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rbpms2a	3.064e-24	41.83	RNA-binding protein with multiple splicing 2 [Sour...	[more]
rbpms2a	3.064e-24	41.83	RNA-binding protein with multiple splicing 2 [Sour...	[more]
ENSORLT00000005176.2	1.051e-22	43.20	RNA binding protein, mRNA processing factor [Sourc...	[more]
ENSORLT00000005173.2	4.466e-22	43.90	RNA binding protein, mRNA processing factor [Sourc...	[more]
rbpms2a	6.182e-18	57.53	RNA-binding protein with multiple splicing 2 [Sour...	[more]

BLAST of RRM domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000064331.1	0.000e+0	92.10	SMESG000064331.1	[more]
SMESG000064331.1	0.000e+0	91.52	SMESG000064331.1	[more]
SMESG000064331.1	1.452e-100	100.00	SMESG000064331.1	[more]
SMESG000071928.1	7.394e-34	36.15	SMESG000071928.1	[more]
SMESG000010632.1	9.083e-6	25.55	SMESG000010632.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30006085 ID=SMED30006085|Name=RRM domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1616bp
GATCTAAACCTGACAAGCTACACACATCAATCCGAATGCATGCATGCAAA
TTTGTCTGACGAATTACATAAGCTCACCATTAGTAGTGACACAAACCAAA
CCGAAACACGACTGCTGAGCATCTGGAAAAAAACAGAAATTTGCTGTTTC
TACAATTGAATCTAGGTAAATTTACCTATCGCTCATTAATTACTAAAACA
CATTCTATTTTACTCCGATTTTGCTTCCTTCCCTCGCGCGAACTATAAAA
TAGACATTACAATGTTGTGAAAGCATCATGAATTGAGTTTCCATAGGCAG
AAGTTATGCAACCGAACAGGCCTGAAAATAATGAAATGCATCAATTTCTC
GTCAAAGTCTCTCAATCTCTGTGATGCAGAAAATCGCCTTTTGAACCAAT
CGCTGATGAATTCCAAATCCAACTCAAAACCAGATAACCAATTTTGCTCT
CCGGGGGTTCCGAATTATCAGATGAAGCCTTATAGTCGGTGTGAAAATGA
GAAATCCAAACCGATGCTACCAACAGTCGGTGTGAGTCTATCTGATGAGA
ATATGATGAATATTTCACATTCTATTGATTCATTGAACACTGTCGGAAGT
AATGGAACAGTTGACATCAACGATCAAGTGAGAACTCTATTTATCAGTGG
GTTACCAATGGATACGAAACCGAGAGAATTATATTTGTTATTCAGAGGAT
ATAAGGGTTACATTTCATCTACTCTAAAACCATCTGGAAAAAATGGAAAA
CTAACTGCGCCTGTTGGCTTTGTGACATTTTCGTCGAGAGAAGAAGCAGA
AATAGCAATGAGCGAGTTACAGATAGAATTGTTGATCAAAACTTTATGTG
TTTGTGAACATAAATTTTATTTTAAATGCCAGCCGGTCAATGAAAAAAAA
ATAAAAATCGGTGTGAAATTTGATCCAGATTCTGCTCAACAAATGCGACT
GGAATTTGCCAGAAGCAATACCAAAGTCACTAGACCGAAAATTGGATTGT
TTTCATTGTCTCAACCATTTTTCAATGCCGCTCTACCCCCCCATGCCATT
ATTCAACAATTTCCTGGATTTGACCACGGATCACTTTTTTCAGCCGATAC
GAGCTGGGCTAACCTGGGATATGATAATGCAATATTGACTGCGACAGGAA
TCTTGCCATCAGCTACACCAAATCTCCACCCCTCTTTACTCCAGGCGCTA
ATGCCCCAAAATGGTTTGAATGGTGGGGTAGTGTCTACGAATTGTTTGCC
TTCTCAAATTCTCAACCAAAACATCATCACATCTCAAAGCTCATTAACAA
ACCCATATTTGGGATCACCAGCTTCATCAATAAACGGAGCAACCATATCA
TATCCTGGCTTAGTGCCTCTGGGATTCTCCACAGTCGGGTTATTAAGTTA
TAACGCTTTAATGAAAGATTTGGTGAACAATTGAGATTTTTTCGACTTTA
GATAGAGAGAGAAACATTCCCAAATTTTAAAAAATGAATATTATTTTCTT
CAAATGATTATTAAGCTCATTTTTATGAAAAATTCTTGATTTAACATATC
AAACTTAATAATTTTAAATTAATTAATTCGATGTTTTCTTTCTGTGGAAT
AAAATTGTCATTTTAC

protein sequence of SMED30006085-orf-1

>SMED30006085-orf-1 ID=SMED30006085-orf-1|Name=SMED30006085-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=368bp
MKCINFSSKSLNLCDAENRLLNQSLMNSKSNSKPDNQFCSPGVPNYQMKP
YSRCENEKSKPMLPTVGVSLSDENMMNISHSIDSLNTVGSNGTVDINDQV
RTLFISGLPMDTKPRELYLLFRGYKGYISSTLKPSGKNGKLTAPVGFVTF
SSREEAEIAMSELQIELLIKTLCVCEHKFYFKCQPVNEKKIKIGVKFDPD
SAQQMRLEFARSNTKVTRPKIGLFSLSQPFFNAALPPHAIIQQFPGFDHG
SLFSADTSWANLGYDNAILTATGILPSATPNLHPSLLQALMPQNGLNGGV
VSTNCLPSQILNQNIITSQSSLTNPYLGSPASSINGATISYPGLVPLGFS
TVGLLSYNALMKDLVNN*

Aliases

The feature 'RRM domain-containing protein' has the following synonyms


Synonym
Smed_01915

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **molecular function**
Term	Definition
GO:0003723	RNA binding
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000020	protonephridia
PLANA:0000099	neuron
PLANA:0000418	head
PLANA:0000463	cholinergic neuron
PLANA:0002075	pigment cell

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Main menu

RRM domain-containing protein

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 15

Owlery

blazegraph-runner