SMED30006051

Overview
NameSMED30006051
Smed IDSMED30006051
Length (bp)1699
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30006051 (SMED30006051) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30006051 (SMED30006051) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30006051 (SMED30006051) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30006051 (SMED30006051) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30006051

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
pigment cellSMED30006051h1SMcG0020586 SmedASXL_011278SmedAsxl_ww_GCZZ01PMID:29158443
He et al., 2017		whole organism asexual adult RNA-sequencing evidence
pharynxSMED30006051h1SMcG0020586 dd_Smed_v4_13617_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30006051h1SMcG0020586 dd_Smed_v4_13617_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30006051h1SMcG0020586 dd_Smed_v4_13617_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30006051 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.000328:120431..128195 +8398
Homology
[Close]
BLAST of SMED30006051 vs. Planmine SMEST
Match: SMESG000010439.1 (SMESG000010439.1)

HSP 1 Score: 753.821 bits (1945), Expect = 0.000e+0
Identity = 365/365 (100.00%), Postives = 365/365 (100.00%), Query Frame = 2 
Query:   95 MGFGDSNNLLVSVIIFVFMATSHSIHSNKPMAISVSLFRNLPPDIDRPFNVTVNFSSYHKINSAFIVYLVNKSETPPKMMQNFIFRPGSQTKIKGFIIGEYFSVVHCLSKTEEKQLKLDLILHEKAQNLVLLMFYSMNYKENATNNNGTEIYQSVISCNVSYLVDMKLVFGKSHVNEEAFPPNQLIWINCSASIEHQPYWKSVRLENLDQMEVFDVKINNRTKETSILAEITLKNHDSLIVCRSVNSTISRRIKIYHHPTSVKTSPSVASRSSIPYNVSITCVTTGGYPPPIVEWKLIIGPLNASRYYTLNKNKTVLVITKKAPPGSKWIFQCFAKNKLPWSEFSGPEMIVSFNIPELGLEARKK 1189
            MGFGDSNNLLVSVIIFVFMATSHSIHSNKPMAISVSLFRNLPPDIDRPFNVTVNFSSYHKINSAFIVYLVNKSETPPKMMQNFIFRPGSQTKIKGFIIGEYFSVVHCLSKTEEKQLKLDLILHEKAQNLVLLMFYSMNYKENATNNNGTEIYQSVISCNVSYLVDMKLVFGKSHVNEEAFPPNQLIWINCSASIEHQPYWKSVRLENLDQMEVFDVKINNRTKETSILAEITLKNHDSLIVCRSVNSTISRRIKIYHHPTSVKTSPSVASRSSIPYNVSITCVTTGGYPPPIVEWKLIIGPLNASRYYTLNKNKTVLVITKKAPPGSKWIFQCFAKNKLPWSEFSGPEMIVSFNIPELGLEARKK
Sbjct:    1 MGFGDSNNLLVSVIIFVFMATSHSIHSNKPMAISVSLFRNLPPDIDRPFNVTVNFSSYHKINSAFIVYLVNKSETPPKMMQNFIFRPGSQTKIKGFIIGEYFSVVHCLSKTEEKQLKLDLILHEKAQNLVLLMFYSMNYKENATNNNGTEIYQSVISCNVSYLVDMKLVFGKSHVNEEAFPPNQLIWINCSASIEHQPYWKSVRLENLDQMEVFDVKINNRTKETSILAEITLKNHDSLIVCRSVNSTISRRIKIYHHPTSVKTSPSVASRSSIPYNVSITCVTTGGYPPPIVEWKLIIGPLNASRYYTLNKNKTVLVITKKAPPGSKWIFQCFAKNKLPWSEFSGPEMIVSFNIPELGLEARKK 365
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BLAST of SMED30006051 vs. Planmine SMEST
Match: SMESG000010439.1 (SMESG000010439.1)

HSP 1 Score: 717.998 bits (1852), Expect = 0.000e+0
Identity = 347/347 (100.00%), Postives = 347/347 (100.00%), Query Frame = 2 
Query:  149 MATSHSIHSNKPMAISVSLFRNLPPDIDRPFNVTVNFSSYHKINSAFIVYLVNKSETPPKMMQNFIFRPGSQTKIKGFIIGEYFSVVHCLSKTEEKQLKLDLILHEKAQNLVLLMFYSMNYKENATNNNGTEIYQSVISCNVSYLVDMKLVFGKSHVNEEAFPPNQLIWINCSASIEHQPYWKSVRLENLDQMEVFDVKINNRTKETSILAEITLKNHDSLIVCRSVNSTISRRIKIYHHPTSVKTSPSVASRSSIPYNVSITCVTTGGYPPPIVEWKLIIGPLNASRYYTLNKNKTVLVITKKAPPGSKWIFQCFAKNKLPWSEFSGPEMIVSFNIPELGLEARKK 1189
            MATSHSIHSNKPMAISVSLFRNLPPDIDRPFNVTVNFSSYHKINSAFIVYLVNKSETPPKMMQNFIFRPGSQTKIKGFIIGEYFSVVHCLSKTEEKQLKLDLILHEKAQNLVLLMFYSMNYKENATNNNGTEIYQSVISCNVSYLVDMKLVFGKSHVNEEAFPPNQLIWINCSASIEHQPYWKSVRLENLDQMEVFDVKINNRTKETSILAEITLKNHDSLIVCRSVNSTISRRIKIYHHPTSVKTSPSVASRSSIPYNVSITCVTTGGYPPPIVEWKLIIGPLNASRYYTLNKNKTVLVITKKAPPGSKWIFQCFAKNKLPWSEFSGPEMIVSFNIPELGLEARKK
Sbjct:    1 MATSHSIHSNKPMAISVSLFRNLPPDIDRPFNVTVNFSSYHKINSAFIVYLVNKSETPPKMMQNFIFRPGSQTKIKGFIIGEYFSVVHCLSKTEEKQLKLDLILHEKAQNLVLLMFYSMNYKENATNNNGTEIYQSVISCNVSYLVDMKLVFGKSHVNEEAFPPNQLIWINCSASIEHQPYWKSVRLENLDQMEVFDVKINNRTKETSILAEITLKNHDSLIVCRSVNSTISRRIKIYHHPTSVKTSPSVASRSSIPYNVSITCVTTGGYPPPIVEWKLIIGPLNASRYYTLNKNKTVLVITKKAPPGSKWIFQCFAKNKLPWSEFSGPEMIVSFNIPELGLEARKK 347
[Close]
BLAST of SMED30006051 vs. Planmine SMEST
Match: SMESG000066856.1 (SMESG000066856.1)

HSP 1 Score: 112.079 bits (279), Expect = 3.347e-26
Identity = 104/395 (26.33%), Postives = 182/395 (46.08%), Query Frame = 2 
Query:  194 SVSLFRNLPPDIDRPFNVTVNFSSYH------KINSAFIVY---LVNKSETPPKMMQNFIFRPGSQTKIKGFIIGEYFSVVHCLSKTEEKQLKLDLILHEKAQNLVLLMFY----SMNYKENATNNNGT--EIYQSVISCNVSYLVDMKLVF--GKSH-VNEEAFPPNQLIWINCSASIEHQPYWKSVRLENLDQMEVFDVKINNRTKETSILAEITLKNHDSLIVCRSVNSTISRRIKIYHHPTSVKTSPSVASRSSIPYNVSITCVTTGGYPPPIVEWKLIIGPLNASRYYTLNKNKTVLVITKKAPPGSKWIFQCFAKNKLPWSEFSGPEMIVSFNIPELGLEARKKVFFVIPVAIIFLLFLVTVLKVHFCKQ------GKVLQKSKQLDWN 1306
            S++L  NL  D    F + VN SS+H      K  S F++    +V +SE    + +     PG +  ++  I  +Y SV++   K   + +++ +  H  A  L+  + Y    + N + NA  N      I+   I  N+  ++D  +    G++  VN E     ++  I+C +     P  + + L+ +DQ++V + K +       + A +   +H+  + C S   T  R IKI+HHPT+++  P+ A   ++P   S+ C    GYPPP + W+ I GP NAS++Y++      L I    P  ++W F C A N +P S   G     +F +   G++  + V   +  AI  LL ++ VL              + L KSK+++ N
Sbjct:   18 SITLCSNLSIDRTDKFPIHVN-SSFHILFKTVKTYSPFLLVKLQIVRRSE----IEETAFINPGIENNLENKISNKYMSVIN-WHKNTYRAIEMIIQFHPPANGLIFEILYFDSETANDRYNAFRNPSVMNRIFSEQIQLNIDAILDFYIATRDGRTDGVNSE-----EMAVISCESK-NGVPPGRPI-LKYIDQLDVKNRKFHEADNRIVVHAFLRKSDHNKYVKCMSTGVTEYRYIKIFHHPTALQLRPNYAG--TMPNGSSVLCTAADGYPPPTINWEFISGPPNASQFYSITAGNN-LTILPHCPLHTQWTFNCTALNSIPKSYDLGTTRSFTFTVSP-GIKVAEIVLGSL-AAIFVLLIIIVVLMKKKSVIKKKMKFSRTLNKSKEINLN 394
[Close]
BLAST of SMED30006051 vs. Planmine SMEST
Match: SMESG000066856.1 (SMESG000066856.1)

HSP 1 Score: 112.079 bits (279), Expect = 3.374e-26
Identity = 104/395 (26.33%), Postives = 182/395 (46.08%), Query Frame = 2 
Query:  194 SVSLFRNLPPDIDRPFNVTVNFSSYH------KINSAFIVY---LVNKSETPPKMMQNFIFRPGSQTKIKGFIIGEYFSVVHCLSKTEEKQLKLDLILHEKAQNLVLLMFY----SMNYKENATNNNGT--EIYQSVISCNVSYLVDMKLVF--GKSH-VNEEAFPPNQLIWINCSASIEHQPYWKSVRLENLDQMEVFDVKINNRTKETSILAEITLKNHDSLIVCRSVNSTISRRIKIYHHPTSVKTSPSVASRSSIPYNVSITCVTTGGYPPPIVEWKLIIGPLNASRYYTLNKNKTVLVITKKAPPGSKWIFQCFAKNKLPWSEFSGPEMIVSFNIPELGLEARKKVFFVIPVAIIFLLFLVTVLKVHFCKQ------GKVLQKSKQLDWN 1306
            S++L  NL  D    F + VN SS+H      K  S F++    +V +SE    + +     PG +  ++  I  +Y SV++   K   + +++ +  H  A  L+  + Y    + N + NA  N      I+   I  N+  ++D  +    G++  VN E     ++  I+C +     P  + + L+ +DQ++V + K +       + A +   +H+  + C S   T  R IKI+HHPT+++  P+ A   ++P   S+ C    GYPPP + W+ I GP NAS++Y++      L I    P  ++W F C A N +P S   G     +F +   G++  + V   +  AI  LL ++ VL              + L KSK+++ N
Sbjct:   17 SITLCSNLSIDRTDKFPIHVN-SSFHILFKTVKTYSPFLLVKLQIVRRSE----IEETAFINPGIENNLENKISNKYMSVIN-WHKNTYRAIEMIIQFHPPANGLIFEILYFDSETANDRYNAFRNPSVMNRIFSEQIQLNIDAILDFYIATRDGRTDGVNSE-----EMAVISCESK-NGVPPGRPI-LKYIDQLDVKNRKFHEADNRIVVHAFLRKSDHNKYVKCMSTGVTEYRYIKIFHHPTALQLRPNYAG--TMPNGSSVLCTAADGYPPPTINWEFISGPPNASQFYSITAGNN-LTILPHCPLHTQWTFNCTALNSIPKSYDLGTTRSFTFTVSP-GIKVAEIVLGSL-AAIFVLLIIIVVLMKKKSVIKKKMKFSRTLNKSKEINLN 393
[Close]
BLAST of SMED30006051 vs. Planmine SMEST
Match: SMESG000002213.1 (SMESG000002213.1)

HSP 1 Score: 103.605 bits (257), Expect = 6.169e-24
Identity = 75/276 (27.17%), Postives = 130/276 (47.10%), Query Frame = 2 
Query:  353 PGSQTKIKGFIIGEYFSVVHCLSKTEEKQLKLDLILHEKAQNLVLLMFY--SMNYKENATNNNG--TEIYQSVISCNVSYLVDMKLVF--GKSH-VNEEAFPPNQLIWINCSASIEHQPYWKSVRLENLDQMEVFDVKINNRTKETSILAEITLKNHDSLIVCRSVNSTISRRIKIYHHPTSVKTSPSVASRSSIPYNVSITCVTTGGYPPPIVEWKLIIGPLNASRYYTLNKNKTVLVITKKAPPGSKWIFQCFAKNKLPWSEFSGPEMIVSFNI 1159
            PG +  +K  I  +Y SV++   K   + +++ +  H  A  L+  + Y      + NA  N      I+   I  N+  ++D  +    G++  VN E     ++  I+C  S    P  + + L+ +DQ++V + K +       + A +   +H+  + C S   T  R IKI+HHPT+++  P+ A   ++P   S+ C    GYPPP + W+ I GP NAS++Y++      L I    P  ++W F C A N +P S   G     +F +
Sbjct:   73 PGIENNLKNKISNKYMSVIN-WHKNTYRAIEMIIQFHPSANRLIFEILYYNGTGNRYNAFRNRSVMNRIFSEQIQLNIDAILDFYIATRDGRTDGVNSE-----EMAVISCE-SKNGVPPGRPI-LKYIDQLDVKNRKFHEADNRIVVHAFLRKSDHNKYVKCMSTGVTEYRYIKIFHHPTALQLRPNYAG--TMPNGSSVLCTAADGYPPPTINWEFISGPPNASQFYSITAGNN-LTILPHCPLHTQWTFNCTALNSIPKSYDLGTTRSFTFTV 337
The following BLAST results are available for this feature:
BLAST of SMED30006051 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006051 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006051 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006051 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006051 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006051 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006051 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006051 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006051 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006051 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006051 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006051 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006051 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30006051 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000010439.10.000e+0100.00SMESG000010439.1[more]
SMESG000010439.10.000e+0100.00SMESG000010439.1[more]
SMESG000066856.13.347e-2626.33SMESG000066856.1[more]
SMESG000066856.13.374e-2626.33SMESG000066856.1[more]
SMESG000002213.16.169e-2427.17SMESG000002213.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30006051 ID=SMED30006051|Name=SMED30006051|organism=Schmidtea mediterranea sexual|type=transcript|length=1699bp
TTTTCACTGTGAATAATGATAACAATATTCAGCAGATTTTCAGGCCTATT
CATTTATCATCAACAGTGAACCTCAACCGACGAAACTATATCAGATGGGG
TTTGGAGACTCGAACAACTTGCTGGTTTCAGTGATCATCTTCGTGTTCAT
GGCAACCTCACACTCGATCCATTCAAACAAGCCAATGGCTATTTCGGTTT
CTCTCTTTCGGAACTTACCTCCTGACATTGACCGTCCCTTTAACGTCACT
GTCAATTTTTCGTCATATCACAAAATCAATTCGGCTTTCATCGTTTATCT
CGTCAACAAATCAGAAACGCCTCCAAAAATGATGCAAAACTTTATATTTA
GACCGGGCTCCCAAACAAAAATCAAAGGTTTCATAATTGGTGAATATTTT
TCTGTCGTTCATTGCTTGTCAAAGACAGAAGAAAAACAGCTCAAGCTAGA
CTTGATACTGCATGAAAAGGCACAGAATCTTGTTCTACTGATGTTCTACT
CGATGAATTACAAGGAGAACGCAACGAATAACAACGGGACAGAAATATAC
CAATCGGTCATTTCCTGCAATGTCAGCTATTTGGTAGACATGAAGTTGGT
CTTTGGGAAATCTCATGTGAACGAGGAGGCCTTTCCCCCAAACCAATTGA
TATGGATCAACTGCAGTGCATCAATAGAGCACCAGCCATATTGGAAATCA
GTGCGACTAGAAAATCTCGATCAGATGGAGGTATTTGATGTGAAAATCAA
TAACAGAACGAAGGAAACGTCCATTCTCGCTGAAATTACATTGAAAAATC
ACGATTCCCTCATTGTATGCCGATCTGTCAACAGCACAATCAGCCGCAGG
ATCAAGATATACCATCACCCAACCTCAGTGAAAACGTCACCATCTGTTGC
GTCGAGGTCTTCAATACCTTACAATGTGTCTATCACGTGCGTGACCACGG
GAGGGTATCCTCCACCAATCGTTGAATGGAAACTGATTATTGGGCCACTA
AATGCTTCAAGATATTACACACTGAATAAAAACAAAACAGTTCTTGTGAT
TACTAAAAAAGCTCCACCAGGCTCCAAGTGGATTTTTCAATGCTTTGCCA
AAAATAAATTACCCTGGTCGGAATTCTCGGGCCCTGAGATGATTGTAAGC
TTTAATATACCAGAGTTGGGGCTGGAAGCCAGGAAAAAAGTATTTTTTGT
AATTCCTGTGGCAATAATCTTTCTGCTGTTTCTAGTGACCGTTCTGAAGG
TCCATTTCTGCAAACAAGGAAAGGTATTGCAGAAGAGCAAGCAACTCGAT
TGGAATATGAAATCAAAAACTTTCGAAAAAAATGAGCTGAAGTTTTTGAA
AACTGATGAAGTTTTTACAGAACATTTAGAAATGGCATCAGACATTACCA
GCACCACTTACAGCATTGAGAAAGGCCTTACAGCACAAACTTTCTACGTG
CTTGATGAAAGCCGATATGATATCGAAGAAATGCTGCCTTCTAAGAAATC
TCTGAAAGACACTCAAAGTTGGATTGATTCCATTGAATCTGAGAAGAATG
CCATTCAAATTTGAATATAATTTCATTAATAAATTCTGTAAATAATGCAT
AAAATAATTGATGAAAAGATTTTATTGTTGTCATGGCTGATTGGCATCTC
CTTTGTTTTGTTTCTCCTACGCATTTTTGCATTTGATGTTAAATCCCCC
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protein sequence of SMED30006051-orf-1

>SMED30006051-orf-1 ID=SMED30006051-orf-1|Name=SMED30006051-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=490bp
MGFGDSNNLLVSVIIFVFMATSHSIHSNKPMAISVSLFRNLPPDIDRPFN
VTVNFSSYHKINSAFIVYLVNKSETPPKMMQNFIFRPGSQTKIKGFIIGE
YFSVVHCLSKTEEKQLKLDLILHEKAQNLVLLMFYSMNYKENATNNNGTE
IYQSVISCNVSYLVDMKLVFGKSHVNEEAFPPNQLIWINCSASIEHQPYW
KSVRLENLDQMEVFDVKINNRTKETSILAEITLKNHDSLIVCRSVNSTIS
RRIKIYHHPTSVKTSPSVASRSSIPYNVSITCVTTGGYPPPIVEWKLIIG
PLNASRYYTLNKNKTVLVITKKAPPGSKWIFQCFAKNKLPWSEFSGPEMI
VSFNIPELGLEARKKVFFVIPVAIIFLLFLVTVLKVHFCKQGKVLQKSKQ
LDWNMKSKTFEKNELKFLKTDEVFTEHLEMASDITSTTYSIEKGLTAQTF
YVLDESRYDIEEMLPSKKSLKDTQSWIDSIESEKNAIQI*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0002075pigment cell
PLANA:0003116parenchymal cell
Vocabulary: INTERPRO
TermDefinition
IPR036179Ig-like_dom_sf
IPR013783Ig-like_fold
IPR007110Ig-like_dom
Vocabulary: molecular function
TermDefinition
GO:0005515protein binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 259..352
score: 7.468
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..24
score: 0.622
NoneNo IPR availableTMHMMTMhelixcoord: 367..389
IPR036179Immunoglobulin-like domain superfamilySUPERFAMILYSSF48726Immunoglobulincoord: 258..338