60S ribosomal protein L24

Overview
Name60S ribosomal protein L24
Smed IDSMED30005988
Length (bp)496
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of 60S ribosomal protein L24 (SMED30005988) t-SNE clustered cells

Violin plots show distribution of expression levels for 60S ribosomal protein L24 (SMED30005988) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of 60S ribosomal protein L24 (SMED30005988) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for 60S ribosomal protein L24 (SMED30005988) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30005988

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 18

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30005988h1SMcG0012146 SmedASXL_009703SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Smed sexual biotypeSMED30005988h1SMcG0012146 Contig32996uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30005988h1SMcG0012146 Contig32996newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30005988h1SMcG0012146 Contig46157uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30005988h1SMcG0012146 Contig46157newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
pharynxSMED30005988h1SMcG0012146 dd_Smed_v4_172_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
protonephridiaSMED30005988h1SMcG0012146 dd_Smed_v4_172_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30005988h1SMcG0012146 dd_Smed_v4_172_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30005988h1SMcG0012146 dd_Smed_v4_172_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30005988h1SMcG0012146 dd_Smed_v4_172_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30005988h1SMcG0012146 dd_Smed_v4_172_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30005988h1SMcG0012146 dd_Smed_v4_172_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30005988h1SMcG0012146 dd_Smed_v4_172_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30005988h1SMcG0012146 dd_Smed_v4_172_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30005988h1SMcG0012146 dd_Smed_v4_172_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30005988h1SMcG0012146 dd_Smed_v4_172_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30005988h1SMcG0012146 dd_Smed_v4_172_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30005988h1SMcG0012146 dd_Smed_v6_172_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of 60S ribosomal protein L24 vs. Ensembl Human
Match: RPL24 (ribosomal protein L24 [Source:HGNC Symbol;Acc:HGNC:10325])

HSP 1 Score: 131.339 bits (329), Expect = 1.572e-39
Identity = 64/111 (57.66%), Postives = 85/111 (76.58%), Query Frame = 2 
Query:   20 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRRKNRKGNQEDEKTKKRSKRYVKPVRAVAGVTKDDILLKRNQKPEFRQAMREEAIR 352
            MK E+C+FSG+K  PGHG++ AR DGKV  F++ K E +F  KRNPR+++WTVLYRRK++KG Q +E  KKR++R VK  RA+ G +  DI+ KRNQKPE R+A RE+AIR
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKG-QSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIR 110
[Close]
BLAST of 60S ribosomal protein L24 vs. Ensembl Human
Match: RPL24 (ribosomal protein L24 [Source:HGNC Symbol;Acc:HGNC:10325])

HSP 1 Score: 132.494 bits (332), Expect = 2.015e-39
Identity = 81/158 (51.27%), Postives = 108/158 (68.35%), Query Frame = 2 
Query:   20 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRRKNRKGNQEDEKTKKRSKRYVKPVRAVAGVTKDDILLKRNQKPEFRQAMREEAIRXXXXXXXXXXXXXXXXXXXXXXXXTSKAPKVVSKNPQTKAPRVSGKR 493
            MK E+C+FSG+K  PGHG++ AR DGKV  F++ K E +F  KRNPR+++WTVLYRRK++KG Q +E  KKR++R VK  RA+ G +  DI+ KRNQKPE R+A RE+AIRAAKE  K K+  KK+   A      +   + + K  +  APRV GKR
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKG-QSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR 157
[Close]
BLAST of 60S ribosomal protein L24 vs. Ensembl Human
Match: RPL24 (ribosomal protein L24 [Source:HGNC Symbol;Acc:HGNC:10325])

HSP 1 Score: 130.954 bits (328), Expect = 7.046e-39
Identity = 64/111 (57.66%), Postives = 85/111 (76.58%), Query Frame = 2 
Query:   20 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRRKNRKGNQEDEKTKKRSKRYVKPVRAVAGVTKDDILLKRNQKPEFRQAMREEAIR 352
            MK E+C+FSG+K  PGHG++ AR DGKV  F++ K E +F  KRNPR+++WTVLYRRK++KG Q +E  KKR++R VK  RA+ G +  DI+ KRNQKPE R+A RE+AIR
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKG-QSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIR 110
[Close]
BLAST of 60S ribosomal protein L24 vs. Ensembl Human
Match: RSL24D1 (ribosomal L24 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:18479])

HSP 1 Score: 49.6766 bits (117), Expect = 1.988e-7
Identity = 24/57 (42.11%), Postives = 30/57 (52.63%), Query Frame = 2 
Query:   20 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRR 190
            M+ E C F      PGHG    R D KV  F   K  ++F  KRNPR+V WT  +R+
Sbjct:    1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRK 57
[Close]
BLAST of 60S ribosomal protein L24 vs. Ensembl Human
Match: RSL24D1 (ribosomal L24 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:18479])

HSP 1 Score: 46.595 bits (109), Expect = 6.151e-7
Identity = 24/57 (42.11%), Postives = 30/57 (52.63%), Query Frame = 2 
Query:   20 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRR 190
            M+ E C F      PGHG    R D KV  F   K  ++F  KRNPR+V WT  +R+
Sbjct:    1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRK 57
[Close]
BLAST of 60S ribosomal protein L24 vs. Ensembl Celegans
Match: rpl-24.1 (60S ribosomal protein L24 [Source:UniProtKB/Swiss-Prot;Acc:O01868])

HSP 1 Score: 119.783 bits (299), Expect = 6.766e-35
Identity = 73/160 (45.62%), Postives = 103/160 (64.38%), Query Frame = 2 
Query:   20 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRRKNRKGNQEDEK-TKKRSKRYVKPV-RAVAGVTKDDILLKRNQKPEFRQAMREEAIRXXXXXXXXXXXXXXXXXXXXXXXXTSKAPKVVSKNPQTKAPRVSGKR 493
            MK E C +SG+K  PGHGK++ R DGKV  F+S K+ +   ++RNPR++ WTVLYR KN+KG    E+ T+K++K+ V+ V RAVAG++ D IL KRNQ  +FR+  RE+A + AK+ NK     K +    +      K  +  +KN +T APRV GKR
Sbjct:    1 MKVETCVYSGYKIHPGHGKRLVRTDGKVQIFLSGKALKGAKLRRNPRDIRWTVLYRIKNKKGTHGQEQVTRKKTKKSVQVVNRAVAGLSLDAILAKRNQTEDFRRQQREQAAKIAKDANKAVRAAKAAANKEKKASQ-PKTQQKTAKNVKTAAPRVGGKR 159
[Close]
BLAST of 60S ribosomal protein L24 vs. Ensembl Fly
Match: RpL24 (gene:FBgn0032518 transcript:FBtr0342637)

HSP 1 Score: 126.716 bits (317), Expect = 1.860e-37
Identity = 62/111 (55.86%), Postives = 83/111 (74.77%), Query Frame = 2 
Query:   20 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRRKNRKGNQEDEKTKKRSKRYVKPVRAVAGVTKDDILLKRNQKPEFRQAMREEAIR 352
            MK  +C FSG+K  PGHGK + ++DGK   F+ KK ERS+ MKRNPR+V+WTVLYRRK+RKG  E+E +KKR++R  K  RA+ G +  +IL KRN KPE R+A R++AI+
Sbjct:    1 MKIGLCAFSGYKIYPGHGKTMVKIDGKSFTFLDKKCERSYLMKRNPRKVTWTVLYRRKHRKGI-EEEASKKRTRRTQKFQRAIVGASLAEILAKRNMKPEVRKAQRDQAIK 110
[Close]
BLAST of 60S ribosomal protein L24 vs. Ensembl Fly
Match: RpL24 (gene:FBgn0032518 transcript:FBtr0345449)

HSP 1 Score: 126.716 bits (317), Expect = 1.860e-37
Identity = 62/111 (55.86%), Postives = 83/111 (74.77%), Query Frame = 2 
Query:   20 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRRKNRKGNQEDEKTKKRSKRYVKPVRAVAGVTKDDILLKRNQKPEFRQAMREEAIR 352
            MK  +C FSG+K  PGHGK + ++DGK   F+ KK ERS+ MKRNPR+V+WTVLYRRK+RKG  E+E +KKR++R  K  RA+ G +  +IL KRN KPE R+A R++AI+
Sbjct:    1 MKIGLCAFSGYKIYPGHGKTMVKIDGKSFTFLDKKCERSYLMKRNPRKVTWTVLYRRKHRKGI-EEEASKKRTRRTQKFQRAIVGASLAEILAKRNMKPEVRKAQRDQAIK 110
[Close]
BLAST of 60S ribosomal protein L24 vs. Ensembl Fly
Match: RpL24 (gene:FBgn0032518 transcript:FBtr0080524)

HSP 1 Score: 126.716 bits (317), Expect = 1.860e-37
Identity = 62/111 (55.86%), Postives = 83/111 (74.77%), Query Frame = 2 
Query:   20 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRRKNRKGNQEDEKTKKRSKRYVKPVRAVAGVTKDDILLKRNQKPEFRQAMREEAIR 352
            MK  +C FSG+K  PGHGK + ++DGK   F+ KK ERS+ MKRNPR+V+WTVLYRRK+RKG  E+E +KKR++R  K  RA+ G +  +IL KRN KPE R+A R++AI+
Sbjct:    1 MKIGLCAFSGYKIYPGHGKTMVKIDGKSFTFLDKKCERSYLMKRNPRKVTWTVLYRRKHRKGI-EEEASKKRTRRTQKFQRAIVGASLAEILAKRNMKPEVRKAQRDQAIK 110
[Close]
BLAST of 60S ribosomal protein L24 vs. Ensembl Fly
Match: RpL24-like (gene:FBgn0037899 transcript:FBtr0082403)

HSP 1 Score: 51.9878 bits (123), Expect = 1.665e-8
Identity = 24/57 (42.11%), Postives = 32/57 (56.14%), Query Frame = 2 
Query:   20 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRR 190
            M+ + C F   K  PGHG +  R D KV  F   K  ++F  K+NPR+V WT  YR+
Sbjct:    1 MRIQTCYFCSSKIYPGHGVQFVRNDCKVFKFCRGKCHKAFKRKKNPRKVGWTKAYRK 57
[Close]
BLAST of 60S ribosomal protein L24 vs. Ensembl Zebrafish
Match: rpl24 (ribosomal protein L24 [Source:NCBI gene;Acc:192301])

HSP 1 Score: 136.732 bits (343), Expect = 2.308e-41
Identity = 82/158 (51.90%), Postives = 111/158 (70.25%), Query Frame = 2 
Query:   20 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRRKNRKGNQEDEKTKKRSKRYVKPVRAVAGVTKDDILLKRNQKPEFRQAMREEAIRXXXXXXXXXXXXXXXXXXXXXXXXTSKAPKVVSKNPQTKAPRVSGKR 493
            MK E+C+FSG+K  PGHG++ AR+DGKV  F++ K E +F  KRNPR+++WTVLYRRK++KG Q +E +KKR++R VK  RA+ G +  +IL KRNQKPE R+A RE+AIRAAKE  K K+  KK    +    A S   + ++K  +  APRV GKR
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARIDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKG-QSEEVSKKRTRRAVKFQRAITGASLAEILAKRNQKPEVRKAQREQAIRAAKEAKKAKQATKKQTTQSSKAPAKSAQKQKIAKPMKVSAPRVGGKR 157
[Close]
BLAST of 60S ribosomal protein L24 vs. Ensembl Zebrafish
Match: rsl24d1 (ribosomal L24 domain containing 1 [Source:NCBI gene;Acc:406266])

HSP 1 Score: 48.521 bits (114), Expect = 3.357e-7
Identity = 23/57 (40.35%), Postives = 29/57 (50.88%), Query Frame = 2 
Query:   20 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRR 190
            M+ E C F      PGHG    R D KV  F   K  ++F  KRNPR+  WT  +R+
Sbjct:    1 MRIEKCYFCSAPVYPGHGMMFVRNDCKVFRFCRSKCHKNFKKKRNPRKTRWTKAFRK 57
[Close]
BLAST of 60S ribosomal protein L24 vs. Ensembl Xenopus
Match: ccni2 (cyclin I family, member 2 [Source:Xenbase;Acc:XB-GENE-5874358])

HSP 1 Score: 124.405 bits (311), Expect = 2.464e-36
Identity = 60/108 (55.56%), Postives = 82/108 (75.93%), Query Frame = 2 
Query:   20 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRRKNRKGNQEDEKTKKRSKRYVKPVRAVAGVTKDDILLKRNQKPEFRQAMREE 343
            MK E+C+FSG+K  PGHG++ AR DGKV  F++ K E +F  KRNPR+++WTVLYRRK++KG Q +E  KKR++R VK  RA+ G +  +I+ KRNQKPE R+A RE+
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKG-QSEEIQKKRTRRAVKFQRAITGASLAEIMAKRNQKPEVRKAQREQ 107
[Close]
BLAST of 60S ribosomal protein L24 vs. Ensembl Xenopus
Match: ccni2 (cyclin I family, member 2 [Source:Xenbase;Acc:XB-GENE-5874358])

HSP 1 Score: 123.635 bits (309), Expect = 2.827e-36
Identity = 60/108 (55.56%), Postives = 82/108 (75.93%), Query Frame = 2 
Query:   20 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRRKNRKGNQEDEKTKKRSKRYVKPVRAVAGVTKDDILLKRNQKPEFRQAMREE 343
            MK E+C+FSG+K  PGHG++ AR DGKV  F++ K E +F  KRNPR+++WTVLYRRK++KG Q +E  KKR++R VK  RA+ G +  +I+ KRNQKPE R+A RE+
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKG-QSEEIQKKRTRRAVKFQRAITGASLAEIMAKRNQKPEVRKAQREQ 107
[Close]
BLAST of 60S ribosomal protein L24 vs. Ensembl Xenopus
Match: ccni2 (cyclin I family, member 2 [Source:Xenbase;Acc:XB-GENE-5874358])

HSP 1 Score: 120.939 bits (302), Expect = 5.717e-35
Identity = 58/105 (55.24%), Postives = 80/105 (76.19%), Query Frame = 2 
Query:   29 EVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRRKNRKGNQEDEKTKKRSKRYVKPVRAVAGVTKDDILLKRNQKPEFRQAMREE 343
            E+C+FSG+K  PGHG++ AR DGKV  F++ K E +F  KRNPR+++WTVLYRRK++KG Q +E  KKR++R VK  RA+ G +  +I+ KRNQKPE R+A RE+
Sbjct:    3 ELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKG-QSEEIQKKRTRRAVKFQRAITGASLAEIMAKRNQKPEVRKAQREQ 106
[Close]
BLAST of 60S ribosomal protein L24 vs. Ensembl Xenopus
Match: ccni2 (cyclin I family, member 2 [Source:Xenbase;Acc:XB-GENE-5874358])

HSP 1 Score: 120.939 bits (302), Expect = 1.662e-34
Identity = 58/109 (53.21%), Postives = 82/109 (75.23%), Query Frame = 2 
Query:   17 IMKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRRKNRKGNQEDEKTKKRSKRYVKPVRAVAGVTKDDILLKRNQKPEFRQAMREE 343
            + + E+C+FSG+K  PGHG++ AR DGKV  F++ K E +F  KRNPR+++WTVLYRRK++KG Q +E  KKR++R VK  RA+ G +  +I+ KRNQKPE R+A RE+
Sbjct:   38 LRRVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKG-QSEEIQKKRTRRAVKFQRAITGASLAEIMAKRNQKPEVRKAQREQ 145
[Close]
BLAST of 60S ribosomal protein L24 vs. Ensembl Xenopus
Match: alx1 (ALX homeobox 1 [Source:Xenbase;Acc:XB-GENE-853095])

HSP 1 Score: 49.2914 bits (116), Expect = 2.015e-7
Identity = 23/57 (40.35%), Postives = 30/57 (52.63%), Query Frame = 2 
Query:   20 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRR 190
            M+ E C F      PGHG    R D KV  F   K  ++F  KRNPR++ WT  +R+
Sbjct:    1 MRVEKCYFCSAPIYPGHGMMFVRNDCKVFRFCRSKCHKNFKKKRNPRKIRWTKAFRK 57
[Close]
BLAST of 60S ribosomal protein L24 vs. Ensembl Mouse
Match: Rpl24 (ribosomal protein L24 [Source:MGI Symbol;Acc:MGI:1915443])

HSP 1 Score: 132.494 bits (332), Expect = 1.384e-39
Identity = 81/158 (51.27%), Postives = 108/158 (68.35%), Query Frame = 2 
Query:   20 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRRKNRKGNQEDEKTKKRSKRYVKPVRAVAGVTKDDILLKRNQKPEFRQAMREEAIRXXXXXXXXXXXXXXXXXXXXXXXXTSKAPKVVSKNPQTKAPRVSGKR 493
            MK E+C+FSG+K  PGHG++ AR DGKV  F++ K E +F  KRNPR+++WTVLYRRK++KG Q +E  KKR++R VK  RA+ G +  DI+ KRNQKPE R+A RE+AIRAAKE  K K+  KK+   A      +   + + K  +  APRV GKR
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKG-QSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR 157
[Close]
BLAST of 60S ribosomal protein L24 vs. Ensembl Mouse
Match: Rsl24d1 (ribosomal L24 domain containing 1 [Source:MGI Symbol;Acc:MGI:2681840])

HSP 1 Score: 49.6766 bits (117), Expect = 1.310e-7
Identity = 24/57 (42.11%), Postives = 30/57 (52.63%), Query Frame = 2 
Query:   20 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRR 190
            M+ E C F      PGHG    R D KV  F   K  ++F  KRNPR+V WT  +R+
Sbjct:    1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRK 57
[Close]
BLAST of 60S ribosomal protein L24 vs. UniProt/SwissProt
Match: sp|Q7Z0T8|RL24_SCHJA (60S ribosomal protein L24 OS=Schistosoma japonicum OX=6182 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 2.126e-40
Identity = 83/159 (52.20%), Postives = 107/159 (67.30%), Query Frame = 2 
Query:   20 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRRKNRKGNQEDEKTKKRSKRYVKPVRAVAGVTKDDILLKRNQKPEFRQAMREEAIRXXXXXXXXXXXXXXXXXXXXXXXXTSKAPKV-VSKNPQTKAPRVSGKR 493
            MK EVC++SGFK  PGHGK++ R+DG+  +FI+KKSERS  +KRNPRE+SWTVLYRRK +KG  E E+TK       K  R +AG +  +I+ KRNQKPE R+AMR++AIR      K+K+ E + K     KK  + APK   +K  Q  APRV GKR
Sbjct:    1 MKLEVCSYSGFKVYPGHGKRVIRVDGRSFYFINKKSERSHYLKRNPREISWTVLYRRKYKKGMSE-EQTKNELSVLTKTARGIAGASLAEIMAKRNQKPEVRKAMRDQAIR--AAKEKQKQKELEKKAKKVEKKKPTLAPKQKAAKITQKPAPRVGGKR 156
[Close]
BLAST of 60S ribosomal protein L24 vs. UniProt/SwissProt
Match: sp|Q8JGR4|RL24_DANRE (60S ribosomal protein L24 OS=Danio rerio OX=7955 GN=rpl24 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.551e-40
Identity = 82/158 (51.90%), Postives = 111/158 (70.25%), Query Frame = 2 
Query:   20 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRRKNRKGNQEDEKTKKRSKRYVKPVRAVAGVTKDDILLKRNQKPEFRQAMREEAIRXXXXXXXXXXXXXXXXXXXXXXXXTSKAPKVVSKNPQTKAPRVSGKR 493
            MK E+C+FSG+K  PGHG++ AR+DGKV  F++ K E +F  KRNPR+++WTVLYRRK++KG Q +E +KKR++R VK  RA+ G +  +IL KRNQKPE R+A RE+AIRAAKE  K K+  KK    +    A S   + ++K  +  APRV GKR
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARVDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKG-QSEEVSKKRTRRAVKFQRAITGASLAEILAKRNQKPEVRKAQREQAIRAAKEAKKAKQATKKQTTQSSKAPAKSAQKQKIAKPMKVSAPRVGGKR 157
[Close]
BLAST of 60S ribosomal protein L24 vs. UniProt/SwissProt
Match: sp|Q9DFQ7|RL24_GILMI (60S ribosomal protein L24 OS=Gillichthys mirabilis OX=8222 GN=rpl24 PE=2 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 3.349e-40
Identity = 81/158 (51.27%), Postives = 110/158 (69.62%), Query Frame = 2 
Query:   20 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRRKNRKGNQEDEKTKKRSKRYVKPVRAVAGVTKDDILLKRNQKPEFRQAMREEAIRXXXXXXXXXXXXXXXXXXXXXXXXTSKAPKVVSKNPQTKAPRVSGKR 493
            MK E+C+FSG+K  PGHG++ AR+DGKV  F++ K E +F  KRNPR+++WTVLYRRK++KG Q +E TKKR++R VK  RA+ G +  +I+ KRNQKPE R+A RE+AIRAAKE  K K+  KK    +    A +     ++K  +  APRV GKR
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARIDGKVFQFLNAKCESAFLAKRNPRQINWTVLYRRKHKKG-QSEEVTKKRTRRAVKFQRAITGASLAEIMAKRNQKPEVRKAQREQAIRAAKESKKAKQATKKPAAASAKTSAKTAQKPKIAKPMKISAPRVGGKR 157
[Close]
BLAST of 60S ribosomal protein L24 vs. UniProt/SwissProt
Match: sp|Q8ISQ3|RL24_BRABE (60S ribosomal protein L24 OS=Branchiostoma belcheri OX=7741 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 7.689e-39
Identity = 83/159 (52.20%), Postives = 109/159 (68.55%), Query Frame = 2 
Query:   20 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRRKNRKGNQEDEKTKKRSKRYVKPVRAVAGVTKDDILLKRNQKPEFRQAMREEAIRXXXXXXXXXXXXXXXXXXXXXXXXT-SKAPKVVSKNPQTKAPRVSGKR 493
            MK E+C +SG+K  PGHGK+ AR DG+V+ F++ K E SF MKRNPRE++WTVLYRRK++KG QE E  KKRS+R  K  RA+ G +  +I+ KRNQKPE R+A RE+A++AAKE  K  ++ K+         A  +KAPK V    +  APRV GKR
Sbjct:    1 MKIELCLYSGYKIYPGHGKRYARTDGRVYTFLNAKCEASFLMKRNPREITWTVLYRRKHKKGQQE-EIQKKRSRRTAKFQRAITGASLTEIMAKRNQKPEVRKAQREQAVKAAKEKKKADQVGKRKAPAKARATAPKTKAPKTV----KAAAPRVGGKR 154
[Close]
BLAST of 60S ribosomal protein L24 vs. UniProt/SwissProt
Match: sp|P83732|RL24_RAT (60S ribosomal protein L24 OS=Rattus norvegicus OX=10116 GN=Rpl24 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 9.678e-39
Identity = 81/158 (51.27%), Postives = 108/158 (68.35%), Query Frame = 2 
Query:   20 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRRKNRKGNQEDEKTKKRSKRYVKPVRAVAGVTKDDILLKRNQKPEFRQAMREEAIRXXXXXXXXXXXXXXXXXXXXXXXXTSKAPKVVSKNPQTKAPRVSGKR 493
            MK E+C+FSG+K  PGHG++ AR DGKV  F++ K E +F  KRNPR+++WTVLYRRK++KG Q +E  KKR++R VK  RA+ G +  DI+ KRNQKPE R+A RE+AIRAAKE  K K+  KK+   A      +   + + K  +  APRV GKR
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKG-QSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR 157
[Close]
BLAST of 60S ribosomal protein L24 vs. TrEMBL
Match: B0Z9M6 (Ribosomal protein rpl24 OS=Lineus viridis OX=56195 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 9.626e-43
Identity = 89/158 (56.33%), Postives = 115/158 (72.78%), Query Frame = 2 
Query:   20 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRRKNRKGNQEDEKTKKRSKRYVKPVRAVAGVTKDDILLKRNQKPEFRQAMREEAIRXXXXXXXXXXXXXXXXXXXXXXXXTSKAPKVVSKNPQTKAPRVSGKR 493
            MK E+C FSG+K  PGHGKK+ ++DGKV+ F+S K+E SF MKRNPR++SWTVLYRRK++KG QE E++KKR++R  K  RA+ G T  DI+ KRNQKPE R+A RE+AIRAAKE  K K+   +S K A  K    KA + +    Q+KAP+V GKR
Sbjct:    1 MKIELCAFSGYKVYPGHGKKLVKIDGKVYQFVSAKAEASFLMKRNPRKISWTVLYRRKHKKGQQE-EQSKKRTRRTTKFQRAITGATLMDIMAKRNQKPEVRKAQREQAIRAAKEKTKTKKAVSRSVKPAATKTKAQKAARPM----QSKAPKVGGKR 153
[Close]
BLAST of 60S ribosomal protein L24 vs. TrEMBL
Match: Q5DDK3 (Uncharacterized protein OS=Schistosoma japonicum OX=6182 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 8.089e-42
Identity = 69/111 (62.16%), Postives = 89/111 (80.18%), Query Frame = 2 
Query:   20 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRRKNRKGNQEDEKTKKRSKRYVKPVRAVAGVTKDDILLKRNQKPEFRQAMREEAIR 352
            MK EVC++SGFK  PGHGK++ R+DG+  +FI+KKSERS  +KRNPRE+SWTVLYRRK +KG  E E+TKKR+KR  K  R +AG +  +I+ KRNQKPE R+AMR++AIR
Sbjct:    1 MKLEVCSYSGFKVYPGHGKRVIRVDGRSFYFINKKSERSHYLKRNPREISWTVLYRRKYKKGMSE-EQTKKRTKRVTKSARGIAGASLAEIMAKRNQKPEVRKAMRDQAIR 110
[Close]
BLAST of 60S ribosomal protein L24 vs. TrEMBL
Match: A0A4Z2CRQ5 (60S ribosomal protein isoform 2 OS=Schistosoma japonicum OX=6182 GN=EWB00_008043 PE=4 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 8.267e-42
Identity = 69/111 (62.16%), Postives = 89/111 (80.18%), Query Frame = 2 
Query:   20 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRRKNRKGNQEDEKTKKRSKRYVKPVRAVAGVTKDDILLKRNQKPEFRQAMREEAIR 352
            MK EVC++SGFK  PGHGK++ R+DG+  +FI+KKSERS  +KRNPRE+SWTVLYRRK +KG  E E+TKKR+KR  K  R +AG +  +I+ KRNQKPE R+AMR++AIR
Sbjct:    1 MKLEVCSYSGFKVYPGHGKRVIRVDGRSFYFINKKSERSHYLKRNPREISWTVLYRRKYKKGMSE-EQTKKRTKRVTKTARGIAGASLAEIMAKRNQKPEVRKAMRDQAIR 110
[Close]
BLAST of 60S ribosomal protein L24 vs. TrEMBL
Match: T1J4N5 (TRASH domain-containing protein OS=Strigamia maritima OX=126957 PE=4 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.056e-41
Identity = 85/160 (53.12%), Postives = 112/160 (70.00%), Query Frame = 2 
Query:   20 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRRKNRKGNQEDEKTKKRSKRYVKPVRAVAGVTKDDILLKRNQKPEFRQAMREEAIRXXXXXXXXXXXXX--XXXXXXXXXXXTSKAPKVVSKNPQTKAPRVSGKR 493
            MK E+C++SG+K  PGHGK++ + DGKV+ F+S K ERS  MKRNPR+++WTVLYRRK++KG QE+E  KKR++R  K  RA+ G T +DI+ KRNQKPE R+A RE+AIRAAKE  K  +++K          +    KAPK +    Q KAPRV GKR
Sbjct:    1 MKIELCSYSGYKIYPGHGKRMVKADGKVYQFLSSKCERSHLMKRNPRKITWTVLYRRKHKKG-QEEEAAKKRTRRTTKFQRAIVGATLNDIMAKRNQKPEVRKAQREQAIRAAKEKAKGTKVQKKPTVAPAKAKQMQKQKAPKPI----QAKAPRVGGKR 155
[Close]
BLAST of 60S ribosomal protein L24 vs. TrEMBL
Match: C1LTF4 (Ribosomal protein L24 OS=Schistosoma japonicum OX=6182 GN=RpL24 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.543e-41
Identity = 69/111 (62.16%), Postives = 89/111 (80.18%), Query Frame = 2 
Query:   20 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRRKNRKGNQEDEKTKKRSKRYVKPVRAVAGVTKDDILLKRNQKPEFRQAMREEAIR 352
            MK EVC++SGFK  PGHGK++ R+DG+  +FI+KKSERS  +KRNPRE+SWTVLYRRK +KG  E E+TKKR+KR  K  R +AG +  +I+ KRNQKPE R+AMR++AIR
Sbjct:    1 MKLEVCSYSGFKVYPGHGKRVIRVDGRSFYFINKKSERSHYLKRNPREISWTVLYRRKYKKGMSE-EQTKKRTKRVTKSARGIAGASLAEIMAKRNQKPEVRKAMRDQAIR 110
[Close]
BLAST of 60S ribosomal protein L24 vs. Ensembl Cavefish
Match: rpl24 (ribosomal protein L24 [Source:NCBI gene;Acc:192301])

HSP 1 Score: 123.635 bits (309), Expect = 2.713e-36
Identity = 78/155 (50.32%), Postives = 107/155 (69.03%), Query Frame = 2 
Query:   29 EVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRRKNRKGNQEDEKTKKRSKRYVKPVRAVAGVTKDDILLKRNQKPEFRQAMREEAIRXXXXXXXXXXXXXXXXXXXXXXXXTSKAPKVVSKNPQTKAPRVSGKR 493
            ++C+FSG+K  PGHG++ AR+DGKV  F++ K E +F  KRNPR++SWTVLYRRK +KG  E E +KKR++R VK  RA+ G +  +IL KRNQKPE R+A RE+AIRAAKE  K K+  KK    +    + +   + ++K  +  APRV GKR
Sbjct:    3 DLCSFSGYKIYPGHGRRYARIDGKVFQFLNAKCESAFLTKRNPRQISWTVLYRRKYKKGLSE-EASKKRTRRAVKFQRAITGASLAEILAKRNQKPEVRKAQREQAIRAAKEAKKAKQATKKVPAQSTKAPSKAAPKQKIAKPMKVSAPRVGGKR 156
[Close]
BLAST of 60S ribosomal protein L24 vs. Ensembl Cavefish
Match: rsl24d1 (ribosomal L24 domain containing 1 [Source:NCBI gene;Acc:103029268])

HSP 1 Score: 48.9062 bits (115), Expect = 2.100e-7
Identity = 24/57 (42.11%), Postives = 29/57 (50.88%), Query Frame = 2 
Query:   20 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRR 190
            M+ E C F      PGHG    R D KV  F   K  R+F  KRNPR+  WT  +R+
Sbjct:    1 MRIEKCFFCSGPVYPGHGMMFVRNDCKVFRFCRSKCHRNFKKKRNPRKTRWTKAFRK 57
[Close]
BLAST of 60S ribosomal protein L24 vs. Ensembl Sea Lamprey
Match: rpl24 (ribosomal protein L24 [Source:NCBI gene;Acc:192301])

HSP 1 Score: 130.568 bits (327), Expect = 1.382e-39
Identity = 63/111 (56.76%), Postives = 82/111 (73.87%), Query Frame = 2 
Query:   20 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRRKNRKGNQEDEKTKKRSKRYVKPVRAVAGVTKDDILLKRNQKPEFRQAMREEAIR 352
            MK ++C+FSG+K  PGHG + AR+DGKV  F+    E +F  KRNPR+++WTVLYRRK++KG QE E +KKRS+R VK  RA+ G T  D L KRNQKP+ R+A RE+ IR
Sbjct:    1 MKLKLCSFSGYKIYPGHGVRFARVDGKVFQFLDANCESAFLSKRNPRQINWTVLYRRKHKKGQQE-EASKKRSRRAVKAQRAITGATLSDFLAKRNQKPKIRKAQREQDIR 110
[Close]
BLAST of 60S ribosomal protein L24 vs. Ensembl Yeast
Match: RPL24B (Ribosomal 60S subunit protein L24B; not essential for translation but may be required for normal translation rate; homologous to mammalian ribosomal protein L24, no bacterial homolog; RPL24B has a paralog, RPL24A, that arose from the whole genome duplication [Source:SGD;Acc:S000003380])

HSP 1 Score: 86.2705 bits (212), Expect = 1.590e-22
Identity = 49/111 (44.14%), Postives = 69/111 (62.16%), Query Frame = 2 
Query:   20 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRRKNRKGNQEDEKTKKRSKRYVKPVRAVAGVTKDDILLKRNQKPEFRQAMREEAIR 352
            MK EV +FSG K  PG G    R D K+  F + KS   F  ++NPR ++WTVL+R+ ++KG  E E  KKRS++ VK  R + G + D I  +R+ KPE R+A REE ++
Sbjct:    1 MKVEVDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHKKGITE-EVAKKRSRKTVKAQRPITGASLDLIKERRSLKPEVRKANREEKLK 110
[Close]
BLAST of 60S ribosomal protein L24 vs. Ensembl Yeast
Match: RPL24A (Ribosomal 60S subunit protein L24A; not essential for translation but may be required for normal translation rate; homologous to mammalian ribosomal protein L24, no bacterial homolog; RPL24A has a paralog, RPL24B, that arose from the whole genome duplication [Source:SGD;Acc:S000002999])

HSP 1 Score: 80.8777 bits (198), Expect = 1.444e-20
Identity = 46/106 (43.40%), Postives = 65/106 (61.32%), Query Frame = 2 
Query:   20 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRRKNRKGNQEDEKTKKRSKRYVKPVRAVAGVTKDDILLKRNQKPEFRQAMR 337
            MK E+ +FSG K  PG G    R D K+  F + KS   F  ++NPR ++WTVL+R+ ++KG  E E  KKRS++ VK  R + G + D I  +R+ KPE R+A R
Sbjct:    1 MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHKKGITE-EVAKKRSRKTVKAQRPITGASLDLIKERRSLKPEVRKANR 105
[Close]
BLAST of 60S ribosomal protein L24 vs. Ensembl Yeast
Match: RLP24 (Essential protein required for ribosomal large subunit biogenesis; associated with pre-60S ribosomal subunits; stimulates the ATPase activity of Afg2p, which is required for release of Rlp24p from the pre-60S particle; has similarity to Rpl24Ap and Rpl24Bp [Source:SGD;Acc:S000003999])

HSP 1 Score: 45.8246 bits (107), Expect = 4.008e-7
Identity = 20/57 (35.09%), Postives = 29/57 (50.88%), Query Frame = 2 
Query:   20 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRR 190
            M+   C+F      PGHG    R D K   F   K  ++F  +RNPR++ WT  +R+
Sbjct:    1 MRIYQCHFCSSPCYPGHGIMFVRNDAKEFRFCRSKCHKAFKQRRNPRKLKWTKAFRK 57
[Close]
BLAST of 60S ribosomal protein L24 vs. Ensembl Nematostella
Match: EDO32549 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SUQ5])

HSP 1 Score: 139.813 bits (351), Expect = 4.885e-43
Identity = 67/111 (60.36%), Postives = 88/111 (79.28%), Query Frame = 2 
Query:   20 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRRKNRKGNQEDEKTKKRSKRYVKPVRAVAGVTKDDILLKRNQKPEFRQAMREEAIR 352
            MK E+CN+SG+K  PGHGK+  R DGKV  F++K+ ER+  M+RNPREV+WTVLYRRK++KG QE E +KKR++R +K  R+V G + D+IL KRNQKPE R+A RE+AIR
Sbjct:    1 MKLELCNYSGYKIYPGHGKRYVRQDGKVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQE-EVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEVRKAQREQAIR 110
[Close]
BLAST of 60S ribosomal protein L24 vs. Ensembl Nematostella
Match: EDO33109 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7ST45])

HSP 1 Score: 101.679 bits (252), Expect = 6.581e-29
Identity = 52/85 (61.18%), Postives = 69/85 (81.18%), Query Frame = 2 
Query:   98 KVHFFISKKSERSFGMKRNPREVSWTVLYRRKNRKGNQEDEKTKKRSKRYVKPVRAVAGVTKDDILLKRNQKPEFRQAMREEAIR 352
            KV  F++K+ ER+  M+RNPREV+WTVLYRRK++KG QE E +KKR++R +K  R+V GV+ D+IL KRNQKPE R+A RE+AIR
Sbjct:    7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQE-EVSKKRTRRNIKFQRSVQGVSLDNILAKRNQKPEVRKAQREQAIR 90
[Close]
BLAST of 60S ribosomal protein L24 vs. Ensembl Nematostella
Match: EDO30967 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SZA0])

HSP 1 Score: 99.7525 bits (247), Expect = 3.253e-28
Identity = 51/85 (60.00%), Postives = 68/85 (80.00%), Query Frame = 2 
Query:   98 KVHFFISKKSERSFGMKRNPREVSWTVLYRRKNRKGNQEDEKTKKRSKRYVKPVRAVAGVTKDDILLKRNQKPEFRQAMREEAIR 352
            KV  F++K+ ER+  M+RNPREV+WTVLYRRK++KG QE E +KKR++R +K  R+V G + D+IL KRNQKPE R+A RE+AIR
Sbjct:    7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQE-EVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEVRKAQREQAIR 90
[Close]
BLAST of 60S ribosomal protein L24 vs. Ensembl Nematostella
Match: EDO28134 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T7B8])

HSP 1 Score: 99.3673 bits (246), Expect = 6.176e-28
Identity = 51/85 (60.00%), Postives = 68/85 (80.00%), Query Frame = 2 
Query:   98 KVHFFISKKSERSFGMKRNPREVSWTVLYRRKNRKGNQEDEKTKKRSKRYVKPVRAVAGVTKDDILLKRNQKPEFRQAMREEAIR 352
            KV  F++K+ ER+  M+RNPREV+WTVLYRRK++KG QE E +KKR++R +K  R+V G + D+IL KRNQKPE R+A RE+AIR
Sbjct:    7 KVFNFLTKRYERALLMRRNPREVTWTVLYRRKHKKGTQE-EVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEVRKAQREQAIR 90
[Close]
BLAST of 60S ribosomal protein L24 vs. Ensembl Nematostella
Match: EDO33112 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7ST51])

HSP 1 Score: 98.9821 bits (245), Expect = 7.675e-28
Identity = 51/85 (60.00%), Postives = 68/85 (80.00%), Query Frame = 2 
Query:   98 KVHFFISKKSERSFGMKRNPREVSWTVLYRRKNRKGNQEDEKTKKRSKRYVKPVRAVAGVTKDDILLKRNQKPEFRQAMREEAIR 352
            KV  F++K+ ER+  M+RNPREV+WTVLYRRK++KG QE E +KKR++R +K  R+V G + D+IL KRNQKPE R+A RE+AIR
Sbjct:    7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQE-EVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEVRKAQREKAIR 90
[Close]
BLAST of 60S ribosomal protein L24 vs. Ensembl Medaka
Match: rpl24 (ribosomal protein L24 [Source:NCBI gene;Acc:101172114])

HSP 1 Score: 127.872 bits (320), Expect = 6.247e-38
Identity = 61/108 (56.48%), Postives = 84/108 (77.78%), Query Frame = 2 
Query:   20 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRRKNRKGNQEDEKTKKRSKRYVKPVRAVAGVTKDDILLKRNQKPEFRQAMREE 343
            MK E+C+FSG+K  PGHG++ AR+DGKV  F++ K E +F  KRNPR+++WTVLYRRK++KG Q +E TKKR++R VK  RA+ G +  +I+ KRNQKPE R+A RE+
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARIDGKVFQFLNAKCESAFLAKRNPRQINWTVLYRRKHKKG-QSEEVTKKRTRRAVKFQRAITGASLAEIMAKRNQKPEVRKAQREQ 107
[Close]
BLAST of 60S ribosomal protein L24 vs. Ensembl Medaka
Match: rsl24d1 (ribosomal L24 domain containing 1 [Source:NCBI gene;Acc:101172974])

HSP 1 Score: 47.3654 bits (111), Expect = 8.188e-7
Identity = 23/57 (40.35%), Postives = 28/57 (49.12%), Query Frame = 2 
Query:   20 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRR 190
            M+ E C F      PGHG    R D K   F   K  R+F  KRNPR+  WT  +R+
Sbjct:    1 MRIEKCYFCSGPVYPGHGVMFVRNDCKTFRFCRSKCHRNFKKKRNPRKTRWTKAFRK 57
[Close]
BLAST of 60S ribosomal protein L24 vs. Planmine SMEST
Match: SMESG000007869.1 (SMESG000007869.1)

HSP 1 Score: 264.618 bits (675), Expect = 5.321e-92
Identity = 157/158 (99.37%), Postives = 158/158 (100.00%), Query Frame = 2 
Query:   20 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRRKNRKGNQEDEKTKKRSKRYVKPVRAVAGVTKDDILLKRNQKPEFRQAMREEAIRXXXXXXXXXXXXXXXXXXXXXXXXTSKAPKVVSKNPQTKAPRVSGKR 493
            MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRRKNRKGNQEDEKTKKRSKRYVKPVRAVAGVTKDDILLKRNQKPEFRQAMREEAIRAAKELNKKKELEKKSKKVAELKKATSKAPKV+SKNPQTKAPRVSGKR
Sbjct:    1 MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVSWTVLYRRKNRKGNQEDEKTKKRSKRYVKPVRAVAGVTKDDILLKRNQKPEFRQAMREEAIRAAKELNKKKELEKKSKKVAELKKATSKAPKVISKNPQTKAPRVSGKR 158
The following BLAST results are available for this feature:
BLAST of 60S ribosomal protein L24 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
RPL241.572e-3957.66ribosomal protein L24 [Source:HGNC Symbol;Acc:HGNC... [more]
RPL242.015e-3951.27ribosomal protein L24 [Source:HGNC Symbol;Acc:HGNC... [more]
RPL247.046e-3957.66ribosomal protein L24 [Source:HGNC Symbol;Acc:HGNC... [more]
RSL24D11.988e-742.11ribosomal L24 domain containing 1 [Source:HGNC Sym... [more]
RSL24D16.151e-742.11ribosomal L24 domain containing 1 [Source:HGNC Sym... [more]
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BLAST of 60S ribosomal protein L24 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rpl-24.16.766e-3545.6360S ribosomal protein L24 [Source:UniProtKB/Swiss... [more]
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BLAST of 60S ribosomal protein L24 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 4
Match NameE-valueIdentityDescription
RpL241.860e-3755.86gene:FBgn0032518 transcript:FBtr0342637[more]
RpL241.860e-3755.86gene:FBgn0032518 transcript:FBtr0345449[more]
RpL241.860e-3755.86gene:FBgn0032518 transcript:FBtr0080524[more]
RpL24-like1.665e-842.11gene:FBgn0037899 transcript:FBtr0082403[more]
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BLAST of 60S ribosomal protein L24 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
rpl242.308e-4151.90ribosomal protein L24 [Source:NCBI gene;Acc:192301... [more]
rsl24d13.357e-740.35ribosomal L24 domain containing 1 [Source:NCBI gen... [more]
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BLAST of 60S ribosomal protein L24 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ccni22.464e-3655.56cyclin I family, member 2 [Source:Xenbase;Acc:XB-G... [more]
ccni22.827e-3655.56cyclin I family, member 2 [Source:Xenbase;Acc:XB-G... [more]
ccni25.717e-3555.24cyclin I family, member 2 [Source:Xenbase;Acc:XB-G... [more]
ccni21.662e-3453.21cyclin I family, member 2 [Source:Xenbase;Acc:XB-G... [more]
alx12.015e-740.35ALX homeobox 1 [Source:Xenbase;Acc:XB-GENE-853095][more]
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BLAST of 60S ribosomal protein L24 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 2
Match NameE-valueIdentityDescription
Rpl241.384e-3951.27ribosomal protein L24 [Source:MGI Symbol;Acc:MGI:1... [more]
Rsl24d11.310e-742.11ribosomal L24 domain containing 1 [Source:MGI Symb... [more]
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BLAST of 60S ribosomal protein L24 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q7Z0T8|RL24_SCHJA2.126e-4052.2060S ribosomal protein L24 OS=Schistosoma japonicum... [more]
sp|Q8JGR4|RL24_DANRE2.551e-4051.9060S ribosomal protein L24 OS=Danio rerio OX=7955 G... [more]
sp|Q9DFQ7|RL24_GILMI3.349e-4051.2760S ribosomal protein L24 OS=Gillichthys mirabilis... [more]
sp|Q8ISQ3|RL24_BRABE7.689e-3952.2060S ribosomal protein L24 OS=Branchiostoma belcher... [more]
sp|P83732|RL24_RAT9.678e-3951.2760S ribosomal protein L24 OS=Rattus norvegicus OX=... [more]
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BLAST of 60S ribosomal protein L24 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
B0Z9M69.626e-4356.33Ribosomal protein rpl24 OS=Lineus viridis OX=56195... [more]
Q5DDK38.089e-4262.16Uncharacterized protein OS=Schistosoma japonicum O... [more]
A0A4Z2CRQ58.267e-4262.1660S ribosomal protein isoform 2 OS=Schistosoma jap... [more]
T1J4N51.056e-4153.13TRASH domain-containing protein OS=Strigamia marit... [more]
C1LTF41.543e-4162.16Ribosomal protein L24 OS=Schistosoma japonicum OX=... [more]
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BLAST of 60S ribosomal protein L24 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
rpl242.713e-3650.32ribosomal protein L24 [Source:NCBI gene;Acc:192301... [more]
rsl24d12.100e-742.11ribosomal L24 domain containing 1 [Source:NCBI gen... [more]
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BLAST of 60S ribosomal protein L24 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rpl241.382e-3956.76ribosomal protein L24 [Source:NCBI gene;Acc:192301... [more]
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BLAST of 60S ribosomal protein L24 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 3
Match NameE-valueIdentityDescription
RPL24B1.590e-2244.14Ribosomal 60S subunit protein L24B; not essential ... [more]
RPL24A1.444e-2043.40Ribosomal 60S subunit protein L24A; not essential ... [more]
RLP244.008e-735.09Essential protein required for ribosomal large sub... [more]
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BLAST of 60S ribosomal protein L24 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5
Match NameE-valueIdentityDescription
EDO325494.885e-4360.36Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO331096.581e-2961.18Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO309673.253e-2860.00Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO281346.176e-2860.00Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO331127.675e-2860.00Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of 60S ribosomal protein L24 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2
Match NameE-valueIdentityDescription
rpl246.247e-3856.48ribosomal protein L24 [Source:NCBI gene;Acc:101172... [more]
rsl24d18.188e-740.35ribosomal L24 domain containing 1 [Source:NCBI gen... [more]
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BLAST of 60S ribosomal protein L24 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000007869.15.321e-9299.37SMESG000007869.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30005988 ID=SMED30005988|Name=60S ribosomal protein L24|organism=Schmidtea mediterranea sexual|type=transcript|length=496bp
AAAATTTTAAATTATTATTATGAAATACGAAGTTTGCAATTTTAGTGGAT
TTAAAGCTATTCCTGGCCATGGGAAAAAAATTGCACGCTTAGATGGCAAA
GTACACTTTTTCATTAGCAAAAAATCAGAACGATCATTTGGAATGAAAAG
AAATCCACGTGAAGTTTCTTGGACTGTTTTGTATAGAAGAAAAAATCGCA
AAGGCAATCAAGAGGATGAAAAAACTAAGAAGAGATCCAAGAGATACGTT
AAGCCAGTTAGAGCTGTTGCTGGAGTTACTAAAGATGATATTCTTTTGAA
AAGAAATCAGAAACCTGAATTCAGACAAGCCATGCGTGAAGAAGCCATAA
GAGCTGCAAAGGAATTGAACAAGAAAAAGGAATTAGAGAAAAAGAGCAAG
AAAGTAGCTGAATTGAAAAAAGCAACTTCTAAAGCACCTAAAGTTGTTTC
TAAAAATCCTCAAACTAAAGCTCCAAGAGTCAGTGGCAAACGTTAA
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protein sequence of SMED30005988-orf-1

>SMED30005988-orf-1 ID=SMED30005988-orf-1|Name=SMED30005988-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=159bp
MKYEVCNFSGFKAIPGHGKKIARLDGKVHFFISKKSERSFGMKRNPREVS
WTVLYRRKNRKGNQEDEKTKKRSKRYVKPVRAVAGVTKDDILLKRNQKPE
FRQAMREEAIRAAKELNKKKELEKKSKKVAELKKATSKAPKVVSKNPQTK
APRVSGKR*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000429neoblast
PLANA:0002032epidermal cell
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR038630L24e/L24_sf
IPR000988Ribosomal_L24e-rel
IPR023441Ribosomal_L24e_dom
Vocabulary: biological process
TermDefinition
GO:0000027ribosomal large subunit assembly
GO:0006412translation
GO:0007275multicellular organism development
GO:0043009chordate embryonic development
GO:1902626assembly of large subunit precursor of preribosome
Vocabulary: molecular function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: cellular component
TermDefinition
GO:0005840ribosome
GO:0022625cytosolic large ribosomal subunit
GO:0030529intracellular ribonucleoprotein complex
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 102..135
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..135
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..158
NoneNo IPR availablePANTHERPTHR10792:SF2760S RIBOSOMAL PROTEIN L24coord: 1..142
NoneNo IPR availableSUPERFAMILYSSF57716Glucocorticoid receptor-like (DNA-binding domain)coord: 4..56
IPR000988Ribosomal protein L24e-relatedPFAMPF01246Ribosomal_L24ecoord: 1..65
e-value: 2.3E-24
score: 85.4
IPR000988Ribosomal protein L24e-relatedPANTHERPTHR1079260S RIBOSOMAL PROTEIN L24coord: 1..142
IPR000988Ribosomal protein L24e-relatedCDDcd00472Ribosomal_L24e_L24coord: 1..54
e-value: 1.96417E-18
score: 72.2198
IPR038630Ribosomal protein L24e/L24 superfamilyGENE3DG3DSA:2.30.170.20coord: 1..62
e-value: 3.0E-24
score: 86.8