CCHC-type domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30005962 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 5
Homology
BLAST of CCHC-type domain-containing protein vs. Ensembl Human
Match: SF1 (splicing factor 1 [Source:HGNC Symbol;Acc:HGNC:12950]) HSP 1 Score: 243.817 bits (621), Expect = 4.062e-72 Identity = 139/301 (46.18%), Postives = 190/301 (63.12%), Query Frame = 1 Query: 598 VPLYLKPDDAEVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHAD-KMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSAP-LPGEDEPLHAYITSMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETDGLNKLKIL-----SEAQSIATNTIICSLCGGTGHLPRDCKVNSNEIPMMEFPVQHVQLEGEYNNFINELGIDEASAKPAYLG 1479 +P L + Y +Q+QI LT KL + R+PSP+P+Y +GKR+NT+E+R R+++EE + NLI + AL PD P AD K R+ +KV IPQD+YP+INF GL+IGPRG T K++EKE KI++RGKGS K GK+ LPGEDEPLHA +T+ + E+V +AVE+I+ I++ GIE PE QNDLRK Q+++LA LNGT RE D +IL SE +SI TNT +C+ CGG GH+ DCK P + +++ EY + + ELG EA PA +G Sbjct: 40 IPPGLTREQERAYIVQLQIEDLTRKLRTGDLGIPPNPEDRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEMVALNPDFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDN----RILRPWQSSETRSI-TNTTVCTKCGGAGHIASDCKFQRPGDP--QSAQDKARMDKEYLSLMAELG--EAPV-PASVG 330
BLAST of CCHC-type domain-containing protein vs. Ensembl Human
Match: SF1 (splicing factor 1 [Source:HGNC Symbol;Acc:HGNC:12950]) HSP 1 Score: 242.662 bits (618), Expect = 1.793e-71 Identity = 139/301 (46.18%), Postives = 190/301 (63.12%), Query Frame = 1 Query: 598 VPLYLKPDDAEVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHAD-KMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSAP-LPGEDEPLHAYITSMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETDGLNKLKIL-----SEAQSIATNTIICSLCGGTGHLPRDCKVNSNEIPMMEFPVQHVQLEGEYNNFINELGIDEASAKPAYLG 1479 +P L + Y +Q+QI LT KL + R+PSP+P+Y +GKR+NT+E+R R+++EE + NLI + AL PD P AD K R+ +KV IPQD+YP+INF GL+IGPRG T K++EKE KI++RGKGS K GK+ LPGEDEPLHA +T+ + E+V +AVE+I+ I++ GIE PE QNDLRK Q+++LA LNGT RE D +IL SE +SI TNT +C+ CGG GH+ DCK P + +++ EY + + ELG EA PA +G Sbjct: 40 IPPGLTREQERAYIVQLQIEDLTRKLRTGDLGIPPNPEDRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEMVALNPDFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDN----RILRPWQSSETRSI-TNTTVCTKCGGAGHIASDCKFQRPGDP--QSAQDKARMDKEYLSLMAELG--EAPV-PASVG 330
BLAST of CCHC-type domain-containing protein vs. Ensembl Human
Match: SF1 (splicing factor 1 [Source:HGNC Symbol;Acc:HGNC:12950]) HSP 1 Score: 243.432 bits (620), Expect = 4.639e-71 Identity = 139/301 (46.18%), Postives = 190/301 (63.12%), Query Frame = 1 Query: 598 VPLYLKPDDAEVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHAD-KMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSAP-LPGEDEPLHAYITSMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETDGLNKLKIL-----SEAQSIATNTIICSLCGGTGHLPRDCKVNSNEIPMMEFPVQHVQLEGEYNNFINELGIDEASAKPAYLG 1479 +P L + Y +Q+QI LT KL + R+PSP+P+Y +GKR+NT+E+R R+++EE + NLI + AL PD P AD K R+ +KV IPQD+YP+INF GL+IGPRG T K++EKE KI++RGKGS K GK+ LPGEDEPLHA +T+ + E+V +AVE+I+ I++ GIE PE QNDLRK Q+++LA LNGT RE D +IL SE +SI TNT +C+ CGG GH+ DCK P + +++ EY + + ELG EA PA +G Sbjct: 40 IPPGLTREQERAYIVQLQIEDLTRKLRTGDLGIPPNPEDRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEMVALNPDFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDN----RILRPWQSSETRSI-TNTTVCTKCGGAGHIASDCKFQRPGDP--QSAQDKARMDKEYLSLMAELG--EAPV-PASVG 330
BLAST of CCHC-type domain-containing protein vs. Ensembl Human
Match: SF1 (splicing factor 1 [Source:HGNC Symbol;Acc:HGNC:12950]) HSP 1 Score: 244.202 bits (622), Expect = 5.210e-71 Identity = 139/301 (46.18%), Postives = 190/301 (63.12%), Query Frame = 1 Query: 598 VPLYLKPDDAEVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHAD-KMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSAP-LPGEDEPLHAYITSMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETDGLNKLKIL-----SEAQSIATNTIICSLCGGTGHLPRDCKVNSNEIPMMEFPVQHVQLEGEYNNFINELGIDEASAKPAYLG 1479 +P L + Y +Q+QI LT KL + R+PSP+P+Y +GKR+NT+E+R R+++EE + NLI + AL PD P AD K R+ +KV IPQD+YP+INF GL+IGPRG T K++EKE KI++RGKGS K GK+ LPGEDEPLHA +T+ + E+V +AVE+I+ I++ GIE PE QNDLRK Q+++LA LNGT RE D +IL SE +SI TNT +C+ CGG GH+ DCK P + +++ EY + + ELG EA PA +G Sbjct: 165 IPPGLTREQERAYIVQLQIEDLTRKLRTGDLGIPPNPEDRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEMVALNPDFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDN----RILRPWQSSETRSI-TNTTVCTKCGGAGHIASDCKFQRPGDP--QSAQDKARMDKEYLSLMAELG--EAPV-PASVG 455
BLAST of CCHC-type domain-containing protein vs. Ensembl Human
Match: SF1 (splicing factor 1 [Source:HGNC Symbol;Acc:HGNC:12950]) HSP 1 Score: 243.047 bits (619), Expect = 6.066e-71 Identity = 139/301 (46.18%), Postives = 190/301 (63.12%), Query Frame = 1 Query: 598 VPLYLKPDDAEVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHAD-KMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSAP-LPGEDEPLHAYITSMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETDGLNKLKIL-----SEAQSIATNTIICSLCGGTGHLPRDCKVNSNEIPMMEFPVQHVQLEGEYNNFINELGIDEASAKPAYLG 1479 +P L + Y +Q+QI LT KL + R+PSP+P+Y +GKR+NT+E+R R+++EE + NLI + AL PD P AD K R+ +KV IPQD+YP+INF GL+IGPRG T K++EKE KI++RGKGS K GK+ LPGEDEPLHA +T+ + E+V +AVE+I+ I++ GIE PE QNDLRK Q+++LA LNGT RE D +IL SE +SI TNT +C+ CGG GH+ DCK P + +++ EY + + ELG EA PA +G Sbjct: 40 IPPGLTREQERAYIVQLQIEDLTRKLRTGDLGIPPNPEDRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEMVALNPDFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDN----RILRPWQSSETRSI-TNTTVCTKCGGAGHIASDCKFQRPGDP--QSAQDKARMDKEYLSLMAELG--EAPV-PASVG 330
BLAST of CCHC-type domain-containing protein vs. Ensembl Celegans
Match: sfa-1 (SF1 protein; Splicing FActor [Source:UniProtKB/TrEMBL;Acc:G5EF97]) HSP 1 Score: 209.534 bits (532), Expect = 1.483e-58 Identity = 118/295 (40.00%), Postives = 171/295 (57.97%), Query Frame = 1 Query: 598 VPLYLKPDDAEVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHAD-KMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSAPLPGEDEPLHAYITSMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETDGLNKLKI------------LSEAQSIATNTIICSLCGGTGHLPRDCKVNSNEIPMMEFPVQHVQLEGEYNNFINELG 1443 +P L D Y +Q++I T KL ++ E R+PSP+PVY +GKR+NT+E R R+ +E+ + I L + P+ P AD + R+ +KV+IPQ+ +PD+NF GL+IGPRG T K LE ETG KI++RGKGS K GKL P+PGE+EPLHAY+T + +A EKIK++I + P+ N+LRK Q+++LA+LNGT+R D N + +A ++ TN I C+ CG GH+ +DCK N M ++ EY+ + ELG Sbjct: 208 LPADLTEDQRNAYLLQLEIEDATRKLRLADFGV-AEGRERSPSPEPVYDANGKRLNTREVRKRQELEQLRHEKIQALLKINPNFKPPADYRAPNIRLHDKVWIPQEQFPDLNFVGLLIGPRGNTLKSLEAETGAKIIIRGKGSIKEGKLTNRLGPMPGENEPLHAYVTGTDMNVIKKACEKIKQVIAEATALPD-NNELRKLQLRELALLNGTFRPEDLANGARCSNCGSDEHKSWECPDAPNV-TNQIKCTNCGAFGHISKDCK---NPKGMY---ASEAGMDDEYSALMAELG 493
BLAST of CCHC-type domain-containing protein vs. Ensembl Celegans
Match: asd-2 (RNA-binding protein asd-2 [Source:UniProtKB/Swiss-Prot;Acc:G5EFF1]) HSP 1 Score: 103.99 bits (258), Expect = 3.885e-24 Identity = 56/125 (44.80%), Postives = 80/125 (64.00%), Query Frame = 1 Query: 889 EKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGK---LNGGSAPLPGEDEPLHAYITSMSRES-----VDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYR 1239 EKVF+P ++PD NF G I+GPRGMT K LE+ETG KI++RG+GS + K LN G E LH I E+ + RAVE+++K++ + PE ++DL++ Q+ +LAI+NGTYR Sbjct: 90 EKVFVPAKEHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSMRDKKKEELNRGKPNWEHLSEELHVLIQCEDTENRAKVKLMRAVEEVRKLL---VPAPEGEDDLKRKQLMELAIINGTYR 211
BLAST of CCHC-type domain-containing protein vs. Ensembl Celegans
Match: asd-2 (RNA-binding protein asd-2 [Source:UniProtKB/Swiss-Prot;Acc:G5EFF1]) HSP 1 Score: 104.375 bits (259), Expect = 9.247e-24 Identity = 56/125 (44.80%), Postives = 80/125 (64.00%), Query Frame = 1 Query: 889 EKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGK---LNGGSAPLPGEDEPLHAYITSMSRES-----VDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYR 1239 EKVF+P ++PD NF G I+GPRGMT K LE+ETG KI++RG+GS + K LN G E LH I E+ + RAVE+++K++ + PE ++DL++ Q+ +LAI+NGTYR Sbjct: 90 EKVFVPAKEHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSMRDKKKEELNRGKPNWEHLSEELHVLIQCEDTENRAKVKLMRAVEEVRKLL---VPAPEGEDDLKRKQLMELAIINGTYR 211
BLAST of CCHC-type domain-containing protein vs. Ensembl Celegans
Match: asd-2 (RNA-binding protein asd-2 [Source:UniProtKB/Swiss-Prot;Acc:G5EFF1]) HSP 1 Score: 103.99 bits (258), Expect = 2.680e-23 Identity = 56/125 (44.80%), Postives = 80/125 (64.00%), Query Frame = 1 Query: 889 EKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGK---LNGGSAPLPGEDEPLHAYITSMSRES-----VDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYR 1239 EKVF+P ++PD NF G I+GPRGMT K LE+ETG KI++RG+GS + K LN G E LH I E+ + RAVE+++K++ + PE ++DL++ Q+ +LAI+NGTYR Sbjct: 162 EKVFVPAKEHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSMRDKKKEELNRGKPNWEHLSEELHVLIQCEDTENRAKVKLMRAVEEVRKLL---VPAPEGEDDLKRKQLMELAIINGTYR 283
BLAST of CCHC-type domain-containing protein vs. Ensembl Celegans
Match: asd-2 (RNA-binding protein asd-2 [Source:UniProtKB/Swiss-Prot;Acc:G5EFF1]) HSP 1 Score: 103.219 bits (256), Expect = 3.603e-23 Identity = 56/125 (44.80%), Postives = 80/125 (64.00%), Query Frame = 1 Query: 889 EKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGK---LNGGSAPLPGEDEPLHAYITSMSRES-----VDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYR 1239 EKVF+P ++PD NF G I+GPRGMT K LE+ETG KI++RG+GS + K LN G E LH I E+ + RAVE+++K++ + PE ++DL++ Q+ +LAI+NGTYR Sbjct: 132 EKVFVPAKEHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSMRDKKKEELNRGKPNWEHLSEELHVLIQCEDTENRAKVKLMRAVEEVRKLL---VPAPEGEDDLKRKQLMELAIINGTYR 253
BLAST of CCHC-type domain-containing protein vs. Ensembl Fly
Match: SF1 (gene:FBgn0025571 transcript:FBtr0083456) HSP 1 Score: 252.292 bits (643), Expect = 1.651e-73 Identity = 132/293 (45.05%), Postives = 186/293 (63.48%), Query Frame = 1 Query: 598 VPLYLKPDDAEVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHAD-KMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSA-PLPGEDEPLHAYITSMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETD-------GLNKLKILSEAQSIATNTIICSLCGGTGHLPRDC--KVNSNEIPMMEFPVQHVQLEGEYNNFINELG 1443 +P L P E Y +Q QI ++ KL + R+PSP+P+Y DGKR+NT+E+R R+R+EE++ LI+++ + P+ P AD K R+ +KV IPQ+ +PDINF GL+IGPRG T K +EK+TG KI++RGKGS K GK+ PLPGEDEPLHA+IT+ + E+V +AV+KIK +I+ GIE PE NDLR+ Q+++LA LNGT RE D + + I TNTI+C+ CGGTGHL +DC K + +P M +++ EY + + ELG Sbjct: 295 LPSTLDPAQQEAYLVQFQIEEISRKLRTGDLGITQNPEERSPSPEPIYSSDGKRLNTREFRYRKRLEEQRHQLIVKMQTVNPEFKPPADYKPPVTRVSDKVLIPQEQHPDINFVGLLIGPRGNTLKAMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGEDEPLHAFITAPNPEAVRKAVDKIKDVIRQGIEVPEGHNDLRRMQLRELAQLNGTLRENDIQRCTCGSTDHKSWQCPDKPIITNTIVCTSCGGTGHLTKDCRNKRPGSGVPGMACEDSQAKIDEEYMSLMAELG 587
BLAST of CCHC-type domain-containing protein vs. Ensembl Fly
Match: how (gene:FBgn0264491 transcript:FBtr0100514) HSP 1 Score: 94.3597 bits (233), Expect = 2.168e-20 Identity = 53/129 (41.09%), Postives = 81/129 (62.79%), Query Frame = 1 Query: 883 IEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGK---LNGGSAPLPGEDEPLHAYITSMSRES-----VDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRET 1245 + EKV++P ++PD NF G I+GPRGMT K LE+ETG KI++RGKGS + K N G + LH IT E+ + +AV +++K++ + E +++L+K Q+ +LAI+NGTYR+T Sbjct: 137 MNEKVYVPVREHPDFNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRDKKKEDANRGKPNWEHLSDDLHVLITVEDTENRATVKLAQAVAEVQKLL---VPQAEGEDELKKRQLMELAIINGTYRDT 262
BLAST of CCHC-type domain-containing protein vs. Ensembl Fly
Match: how (gene:FBgn0264491 transcript:FBtr0084178) HSP 1 Score: 93.9745 bits (232), Expect = 2.330e-20 Identity = 53/129 (41.09%), Postives = 81/129 (62.79%), Query Frame = 1 Query: 883 IEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGK---LNGGSAPLPGEDEPLHAYITSMSRES-----VDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRET 1245 + EKV++P ++PD NF G I+GPRGMT K LE+ETG KI++RGKGS + K N G + LH IT E+ + +AV +++K++ + E +++L+K Q+ +LAI+NGTYR+T Sbjct: 137 MNEKVYVPVREHPDFNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRDKKKEDANRGKPNWEHLSDDLHVLITVEDTENRATVKLAQAVAEVQKLL---VPQAEGEDELKKRQLMELAIINGTYRDT 262
BLAST of CCHC-type domain-containing protein vs. Ensembl Fly
Match: how (gene:FBgn0264491 transcript:FBtr0084177) HSP 1 Score: 93.9745 bits (232), Expect = 3.082e-20 Identity = 53/129 (41.09%), Postives = 81/129 (62.79%), Query Frame = 1 Query: 883 IEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGK---LNGGSAPLPGEDEPLHAYITSMSRES-----VDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRET 1245 + EKV++P ++PD NF G I+GPRGMT K LE+ETG KI++RGKGS + K N G + LH IT E+ + +AV +++K++ + E +++L+K Q+ +LAI+NGTYR+T Sbjct: 137 MNEKVYVPVREHPDFNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRDKKKEDANRGKPNWEHLSDDLHVLITVEDTENRATVKLAQAVAEVQKLL---VPQAEGEDELKKRQLMELAIINGTYRDT 262
BLAST of CCHC-type domain-containing protein vs. Ensembl Fly
Match: how (gene:FBgn0264491 transcript:FBtr0301401) HSP 1 Score: 93.9745 bits (232), Expect = 3.082e-20 Identity = 53/129 (41.09%), Postives = 81/129 (62.79%), Query Frame = 1 Query: 883 IEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGK---LNGGSAPLPGEDEPLHAYITSMSRES-----VDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRET 1245 + EKV++P ++PD NF G I+GPRGMT K LE+ETG KI++RGKGS + K N G + LH IT E+ + +AV +++K++ + E +++L+K Q+ +LAI+NGTYR+T Sbjct: 137 MNEKVYVPVREHPDFNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRDKKKEDANRGKPNWEHLSDDLHVLITVEDTENRATVKLAQAVAEVQKLL---VPQAEGEDELKKRQLMELAIINGTYRDT 262
BLAST of CCHC-type domain-containing protein vs. Ensembl Zebrafish
Match: sf1 (splicing factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2492]) HSP 1 Score: 248.44 bits (633), Expect = 9.170e-74 Identity = 135/292 (46.23%), Postives = 184/292 (63.01%), Query Frame = 1 Query: 598 VPLYLKPDDAEVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHAD-KMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSAP-LPGEDEPLHAYITSMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETDGLNKLKILSEAQSI----ATNTIICSLCGGTGHLPRDCKVNSNEIPMMEFPVQHVQ----LEGEYNNFINELG 1443 +P L D Y +Q+QI LT KL + + R+PSP+P+Y +GKR+NT+EYR R+++EE + +LI + L P+ P AD K R+ +KV IPQD+YP+INF GL+IGPRG T K++EKE KI++RGKGS K GK+ LPGEDEPLHA +T+ + E+V +AVE+I+ I++ GIE PE QNDLRK Q+++LA LNGT RE D +IL QS TNT +C+ CGG GH+ DCK S+ P P Q Q ++ EY + + ELG Sbjct: 40 IPPGLTRDQERAYIVQLQIEDLTRKLRTGDLGIPVNPEDRSPSPEPIYNSEGKRLNTREYRTRKKLEEERHSLITEMVGLNPEFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECCAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDN----RILRPWQSTEPRSITNTTLCTKCGGAGHISSDCKFTSSFAPRPGEPPQSAQDKARMDKEYLSLMAELG 327
BLAST of CCHC-type domain-containing protein vs. Ensembl Zebrafish
Match: sf1 (splicing factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2492]) HSP 1 Score: 248.054 bits (632), Expect = 9.330e-73 Identity = 135/292 (46.23%), Postives = 184/292 (63.01%), Query Frame = 1 Query: 598 VPLYLKPDDAEVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHAD-KMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSAP-LPGEDEPLHAYITSMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETDGLNKLKILSEAQSI----ATNTIICSLCGGTGHLPRDCKVNSNEIPMMEFPVQHVQ----LEGEYNNFINELG 1443 +P L D Y +Q+QI LT KL + + R+PSP+P+Y +GKR+NT+EYR R+++EE + +LI + L P+ P AD K R+ +KV IPQD+YP+INF GL+IGPRG T K++EKE KI++RGKGS K GK+ LPGEDEPLHA +T+ + E+V +AVE+I+ I++ GIE PE QNDLRK Q+++LA LNGT RE D +IL QS TNT +C+ CGG GH+ DCK S+ P P Q Q ++ EY + + ELG Sbjct: 112 IPPGLTRDQERAYIVQLQIEDLTRKLRTGDLGIPVNPEDRSPSPEPIYNSEGKRLNTREYRTRKKLEEERHSLITEMVGLNPEFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECCAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDN----RILRPWQSTEPRSITNTTLCTKCGGAGHISSDCKFTSSFAPRPGEPPQSAQDKARMDKEYLSLMAELG 399
BLAST of CCHC-type domain-containing protein vs. Ensembl Zebrafish
Match: qki2 (QKI, KH domain containing, RNA binding 2 [Source:NCBI gene;Acc:393815]) HSP 1 Score: 99.7525 bits (247), Expect = 1.317e-22 Identity = 58/132 (43.94%), Postives = 85/132 (64.39%), Query Frame = 1 Query: 877 ARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGK---LNGGSAPLPGEDEPLHAYIT---SMSRESV--DRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETD 1248 A+++EK+++P +YPD NF G I+GPRG+T K LE ETG KI++RGKGS + K N G +E LH IT S +R + RAVE++KK++ + E ++ L+K Q+ +LAILNGTYR+ + Sbjct: 59 AQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDSQNRAEIKLKRAVEEVKKLL---VPAAEGEDSLKKMQLMELAILNGTYRDAN 187
BLAST of CCHC-type domain-containing protein vs. Ensembl Zebrafish
Match: qki2 (QKI, KH domain containing, RNA binding 2 [Source:NCBI gene;Acc:393815]) HSP 1 Score: 99.7525 bits (247), Expect = 1.528e-22 Identity = 58/132 (43.94%), Postives = 85/132 (64.39%), Query Frame = 1 Query: 877 ARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGK---LNGGSAPLPGEDEPLHAYIT---SMSRESV--DRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETD 1248 A+++EK+++P +YPD NF G I+GPRG+T K LE ETG KI++RGKGS + K N G +E LH IT S +R + RAVE++KK++ + E ++ L+K Q+ +LAILNGTYR+ + Sbjct: 80 AQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDSQNRAEIKLKRAVEEVKKLL---VPAAEGEDSLKKMQLMELAILNGTYRDAN 208
BLAST of CCHC-type domain-containing protein vs. Ensembl Zebrafish
Match: qki2 (QKI, KH domain containing, RNA binding 2 [Source:NCBI gene;Acc:393815]) HSP 1 Score: 99.3673 bits (246), Expect = 2.049e-22 Identity = 58/132 (43.94%), Postives = 85/132 (64.39%), Query Frame = 1 Query: 877 ARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGK---LNGGSAPLPGEDEPLHAYIT---SMSRESV--DRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETD 1248 A+++EK+++P +YPD NF G I+GPRG+T K LE ETG KI++RGKGS + K N G +E LH IT S +R + RAVE++KK++ + E ++ L+K Q+ +LAILNGTYR+ + Sbjct: 80 AQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDSQNRAEIKLKRAVEEVKKLL---VPAAEGEDSLKKMQLMELAILNGTYRDAN 208
BLAST of CCHC-type domain-containing protein vs. Ensembl Xenopus
Match: men1 (menin 1 [Source:NCBI gene;Acc:549115]) HSP 1 Score: 239.965 bits (611), Expect = 6.649e-71 Identity = 134/291 (46.05%), Postives = 185/291 (63.57%), Query Frame = 1 Query: 598 VPLYLKPDDAEVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHAD-KMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSAP-LPGEDEPLHAYITSMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETDGLNKLKIL-----SEAQSIATNTIICSLCGGTGHLPRDCKVNSNEI-PMMEFPVQ-HVQLEGEYNNFINELG 1443 +P L + Y +Q+QI LT KL + R+PSP+P+Y +GKR+NT+E+R R+++EE + NLI + L PD P AD K R+ +KV IPQD+YP+INF GL+IGPRG T K++EKE KI++RGKGS K GK+ LPGEDEPLHA +T+ + E+V +AV++I+ I++ GIE PE QNDLRK Q+++LA LNGT RE D +IL SE +SI TNT +C+ CGG GH+ DCK S + P Q +++ EY + + ELG Sbjct: 44 IPPGLTREQERAYIVQLQIEDLTRKLRTGDLGIPPNPEDRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEMVGLNPDFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVDQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDN----RILRPWQSSETRSI-TNTTVCTKCGGAGHIASDCKFTSVTVRPGEPQSAQDKARMDKEYLSLMAELG 329
BLAST of CCHC-type domain-containing protein vs. Ensembl Xenopus
Match: men1 (menin 1 [Source:NCBI gene;Acc:549115]) HSP 1 Score: 238.81 bits (608), Expect = 1.445e-69 Identity = 134/291 (46.05%), Postives = 185/291 (63.57%), Query Frame = 1 Query: 598 VPLYLKPDDAEVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHAD-KMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSAP-LPGEDEPLHAYITSMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETDGLNKLKIL-----SEAQSIATNTIICSLCGGTGHLPRDCKVNSNEI-PMMEFPVQ-HVQLEGEYNNFINELG 1443 +P L + Y +Q+QI LT KL + R+PSP+P+Y +GKR+NT+E+R R+++EE + NLI + L PD P AD K R+ +KV IPQD+YP+INF GL+IGPRG T K++EKE KI++RGKGS K GK+ LPGEDEPLHA +T+ + E+V +AV++I+ I++ GIE PE QNDLRK Q+++LA LNGT RE D +IL SE +SI TNT +C+ CGG GH+ DCK S + P Q +++ EY + + ELG Sbjct: 74 IPPGLTREQERAYIVQLQIEDLTRKLRTGDLGIPPNPEDRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEMVGLNPDFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVDQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDN----RILRPWQSSETRSI-TNTTVCTKCGGAGHIASDCKFTSVTVRPGEPQSAQDKARMDKEYLSLMAELG 359
BLAST of CCHC-type domain-containing protein vs. Ensembl Xenopus
Match: men1 (menin 1 [Source:NCBI gene;Acc:549115]) HSP 1 Score: 238.424 bits (607), Expect = 2.943e-69 Identity = 134/291 (46.05%), Postives = 185/291 (63.57%), Query Frame = 1 Query: 598 VPLYLKPDDAEVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHAD-KMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSAP-LPGEDEPLHAYITSMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETDGLNKLKIL-----SEAQSIATNTIICSLCGGTGHLPRDCKVNSNEI-PMMEFPVQ-HVQLEGEYNNFINELG 1443 +P L + Y +Q+QI LT KL + R+PSP+P+Y +GKR+NT+E+R R+++EE + NLI + L PD P AD K R+ +KV IPQD+YP+INF GL+IGPRG T K++EKE KI++RGKGS K GK+ LPGEDEPLHA +T+ + E+V +AV++I+ I++ GIE PE QNDLRK Q+++LA LNGT RE D +IL SE +SI TNT +C+ CGG GH+ DCK S + P Q +++ EY + + ELG Sbjct: 101 IPPGLTREQERAYIVQLQIEDLTRKLRTGDLGIPPNPEDRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEMVGLNPDFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVDQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDN----RILRPWQSSETRSI-TNTTVCTKCGGAGHIASDCKFTSVTVRPGEPQSAQDKARMDKEYLSLMAELG 386
BLAST of CCHC-type domain-containing protein vs. Ensembl Xenopus
Match: spsb3 (splA/ryanodine receptor domain and SOCS box containing 3 [Source:Xenbase;Acc:XB-GENE-971062]) HSP 1 Score: 96.6709 bits (239), Expect = 2.503e-21 Identity = 55/132 (41.67%), Postives = 83/132 (62.88%), Query Frame = 1 Query: 877 ARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGK---LNGGSAPLPGEDEPLHAYITSMSRES-----VDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETD 1248 +++EK+++P +YPD NF G I+GPRG+T K LE ETG KI++RGKGS + K N G +E LH IT ++ + RAVE++KK++ + E ++ L+K Q+ +LAILNGTYR+ + Sbjct: 81 VQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLL---VPAAEGEDSLKKMQLMELAILNGTYRDAN 209
BLAST of CCHC-type domain-containing protein vs. Ensembl Xenopus
Match: spsb3 (splA/ryanodine receptor domain and SOCS box containing 3 [Source:Xenbase;Acc:XB-GENE-971062]) HSP 1 Score: 92.0485 bits (227), Expect = 2.309e-19 Identity = 55/147 (37.41%), Postives = 83/147 (56.46%), Query Frame = 1 Query: 877 ARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGK------------------LNGGSAPLPGEDEPLHAYITSMSRES-----VDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETD 1248 +++EK+++P +YPD NF G I+GPRG+T K LE ETG KI++RGKGS + K N G +E LH IT ++ + RAVE++KK++ + E ++ L+K Q+ +LAILNGTYR+ + Sbjct: 105 VQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKAVTNILECSILALNKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLL---VPAAEGEDSLKKMQLMELAILNGTYRDAN 248
BLAST of CCHC-type domain-containing protein vs. Ensembl Mouse
Match: Sf1 (splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]) HSP 1 Score: 237.654 bits (605), Expect = 3.130e-73 Identity = 127/259 (49.03%), Postives = 171/259 (66.02%), Query Frame = 1 Query: 598 VPLYLKPDDAEVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHAD-KMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSAP-LPGEDEPLHAYITSMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETDGLNKLKIL-----SEAQSIATNTIICSLCGGTGHLPRDCK 1353 +P L + Y +Q+QI LT KL + R+PSP+P+Y +GKR+NT+E+R R+++EE + LI + AL PD P AD K R+ +KV IPQD+YP+INF GL+IGPRG T K++EKE KI++RGKGS K GK+ LPGEDEPLHA +T+ + E+V +AVE+I+ I++ GIE PE QNDLRK Q+++LA LNGT RE D +IL SE +SI TNT +C+ CGG GH+ DCK Sbjct: 14 IPPGLTREQERAYIVQLQIEDLTRKLRTGDLGIPPNPEDRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHTLITEMVALNPDFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDN----RILRPWQSSETRSI-TNTTVCTKCGGAGHIASDCK 267
BLAST of CCHC-type domain-containing protein vs. Ensembl Mouse
Match: Sf1 (splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]) HSP 1 Score: 237.654 bits (605), Expect = 3.130e-73 Identity = 127/259 (49.03%), Postives = 171/259 (66.02%), Query Frame = 1 Query: 598 VPLYLKPDDAEVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHAD-KMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSAP-LPGEDEPLHAYITSMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETDGLNKLKIL-----SEAQSIATNTIICSLCGGTGHLPRDCK 1353 +P L + Y +Q+QI LT KL + R+PSP+P+Y +GKR+NT+E+R R+++EE + LI + AL PD P AD K R+ +KV IPQD+YP+INF GL+IGPRG T K++EKE KI++RGKGS K GK+ LPGEDEPLHA +T+ + E+V +AVE+I+ I++ GIE PE QNDLRK Q+++LA LNGT RE D +IL SE +SI TNT +C+ CGG GH+ DCK Sbjct: 14 IPPGLTREQERAYIVQLQIEDLTRKLRTGDLGIPPNPEDRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHTLITEMVALNPDFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDN----RILRPWQSSETRSI-TNTTVCTKCGGAGHIASDCK 267
BLAST of CCHC-type domain-containing protein vs. Ensembl Mouse
Match: Sf1 (splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]) HSP 1 Score: 241.891 bits (616), Expect = 1.616e-71 Identity = 138/301 (45.85%), Postives = 189/301 (62.79%), Query Frame = 1 Query: 598 VPLYLKPDDAEVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHAD-KMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSAP-LPGEDEPLHAYITSMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETDGLNKLKIL-----SEAQSIATNTIICSLCGGTGHLPRDCKVNSNEIPMMEFPVQHVQLEGEYNNFINELGIDEASAKPAYLG 1479 +P L + Y +Q+QI LT KL + R+PSP+P+Y +GKR+NT+E+R R+++EE + LI + AL PD P AD K R+ +KV IPQD+YP+INF GL+IGPRG T K++EKE KI++RGKGS K GK+ LPGEDEPLHA +T+ + E+V +AVE+I+ I++ GIE PE QNDLRK Q+++LA LNGT RE D +IL SE +SI TNT +C+ CGG GH+ DCK P + +++ EY + + ELG EA PA +G Sbjct: 40 IPPGLTREQERAYIVQLQIEDLTRKLRTGDLGIPPNPEDRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHTLITEMVALNPDFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDN----RILRPWQSSETRSI-TNTTVCTKCGGAGHIASDCKFQRPGDP--QSAQDKARMDKEYLSLMAELG--EAPV-PASVG 330
BLAST of CCHC-type domain-containing protein vs. Ensembl Mouse
Match: Sf1 (splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]) HSP 1 Score: 241.891 bits (616), Expect = 1.616e-71 Identity = 138/301 (45.85%), Postives = 189/301 (62.79%), Query Frame = 1 Query: 598 VPLYLKPDDAEVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHAD-KMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSAP-LPGEDEPLHAYITSMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETDGLNKLKIL-----SEAQSIATNTIICSLCGGTGHLPRDCKVNSNEIPMMEFPVQHVQLEGEYNNFINELGIDEASAKPAYLG 1479 +P L + Y +Q+QI LT KL + R+PSP+P+Y +GKR+NT+E+R R+++EE + LI + AL PD P AD K R+ +KV IPQD+YP+INF GL+IGPRG T K++EKE KI++RGKGS K GK+ LPGEDEPLHA +T+ + E+V +AVE+I+ I++ GIE PE QNDLRK Q+++LA LNGT RE D +IL SE +SI TNT +C+ CGG GH+ DCK P + +++ EY + + ELG EA PA +G Sbjct: 40 IPPGLTREQERAYIVQLQIEDLTRKLRTGDLGIPPNPEDRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHTLITEMVALNPDFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDN----RILRPWQSSETRSI-TNTTVCTKCGGAGHIASDCKFQRPGDP--QSAQDKARMDKEYLSLMAELG--EAPV-PASVG 330
BLAST of CCHC-type domain-containing protein vs. Ensembl Mouse
Match: Sf1 (splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]) HSP 1 Score: 241.121 bits (614), Expect = 5.043e-71 Identity = 138/301 (45.85%), Postives = 189/301 (62.79%), Query Frame = 1 Query: 598 VPLYLKPDDAEVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHAD-KMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSAP-LPGEDEPLHAYITSMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETDGLNKLKIL-----SEAQSIATNTIICSLCGGTGHLPRDCKVNSNEIPMMEFPVQHVQLEGEYNNFINELGIDEASAKPAYLG 1479 +P L + Y +Q+QI LT KL + R+PSP+P+Y +GKR+NT+E+R R+++EE + LI + AL PD P AD K R+ +KV IPQD+YP+INF GL+IGPRG T K++EKE KI++RGKGS K GK+ LPGEDEPLHA +T+ + E+V +AVE+I+ I++ GIE PE QNDLRK Q+++LA LNGT RE D +IL SE +SI TNT +C+ CGG GH+ DCK P + +++ EY + + ELG EA PA +G Sbjct: 40 IPPGLTREQERAYIVQLQIEDLTRKLRTGDLGIPPNPEDRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHTLITEMVALNPDFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDN----RILRPWQSSETRSI-TNTTVCTKCGGAGHIASDCKFQRPGDP--QSAQDKARMDKEYLSLMAELG--EAPV-PASVG 330
BLAST of CCHC-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q15637|SF01_HUMAN (Splicing factor 1 OS=Homo sapiens OX=9606 GN=SF1 PE=1 SV=4) HSP 1 Score: 243.432 bits (620), Expect = 2.228e-70 Identity = 139/301 (46.18%), Postives = 190/301 (63.12%), Query Frame = 1 Query: 598 VPLYLKPDDAEVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHAD-KMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSAP-LPGEDEPLHAYITSMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETDGLNKLKIL-----SEAQSIATNTIICSLCGGTGHLPRDCKVNSNEIPMMEFPVQHVQLEGEYNNFINELGIDEASAKPAYLG 1479 +P L + Y +Q+QI LT KL + R+PSP+P+Y +GKR+NT+E+R R+++EE + NLI + AL PD P AD K R+ +KV IPQD+YP+INF GL+IGPRG T K++EKE KI++RGKGS K GK+ LPGEDEPLHA +T+ + E+V +AVE+I+ I++ GIE PE QNDLRK Q+++LA LNGT RE D +IL SE +SI TNT +C+ CGG GH+ DCK P + +++ EY + + ELG EA PA +G Sbjct: 40 IPPGLTREQERAYIVQLQIEDLTRKLRTGDLGIPPNPEDRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEMVALNPDFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDN----RILRPWQSSETRSI-TNTTVCTKCGGAGHIASDCKFQRPGDP--QSAQDKARMDKEYLSLMAELG--EAPV-PASVG 330
BLAST of CCHC-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q64213|SF01_MOUSE (Splicing factor 1 OS=Mus musculus OX=10090 GN=Sf1 PE=1 SV=6) HSP 1 Score: 241.121 bits (614), Expect = 2.379e-69 Identity = 138/301 (45.85%), Postives = 189/301 (62.79%), Query Frame = 1 Query: 598 VPLYLKPDDAEVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHAD-KMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSAP-LPGEDEPLHAYITSMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETDGLNKLKIL-----SEAQSIATNTIICSLCGGTGHLPRDCKVNSNEIPMMEFPVQHVQLEGEYNNFINELGIDEASAKPAYLG 1479 +P L + Y +Q+QI LT KL + R+PSP+P+Y +GKR+NT+E+R R+++EE + LI + AL PD P AD K R+ +KV IPQD+YP+INF GL+IGPRG T K++EKE KI++RGKGS K GK+ LPGEDEPLHA +T+ + E+V +AVE+I+ I++ GIE PE QNDLRK Q+++LA LNGT RE D +IL SE +SI TNT +C+ CGG GH+ DCK P + +++ EY + + ELG EA PA +G Sbjct: 40 IPPGLTREQERAYIVQLQIEDLTRKLRTGDLGIPPNPEDRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHTLITEMVALNPDFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDN----RILRPWQSSETRSI-TNTTVCTKCGGAGHIASDCKFQRPGDP--QSAQDKARMDKEYLSLMAELG--EAPV-PASVG 330
BLAST of CCHC-type domain-containing protein vs. UniProt/SwissProt
Match: sp|O74555|BBP_SCHPO (Branchpoint-bridging protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=bpb1 PE=1 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 5.399e-48 Identity = 100/288 (34.72%), Postives = 158/288 (54.86%), Query Frame = 1 Query: 628 EVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHADKMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSAPLPGEDEPLHAYITSMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETDGLNKLKILSEAQSIA------------TNTIICSLCGGTGHLPRDCKVNSNEIPMMEFPVQHVQLEGEYNNFINELGIDEA 1455 E+YS+ +++ +T KL + R+PSP P Y + G+R+NT+E R ++++E+ + +I R + P +D A+ +EKV++P DYP+INF GL+IGPRG T KD+E ++G KI +RGKGS K GK + +E LH +T+ S + ++ A++ I +IQ PE QNDL++NQ++QLA LNGT R+ + ++ ++ T I+C CG GH+ RDC V + PM + + EY + + ELG A Sbjct: 103 ELYSLNVRLEEITQKLRTGDVVPHHRE--RSPSPPPQYDNHGRRLNTREIRYKKKLEDERHRIIERAMKMVPGFRAPSDYRRPAKTQEKVYVPVKDYPEINFIGLLIGPRGHTLKDMEAKSGAKIAIRGKGSVKEGKGRSDPSVRGNMEEDLHCLVTADSEDKINHAIKLIDNVIQTAASVPEGQNDLKRNQLRQLATLNGTLRDDEN----QVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVRDQQPPMAD-----STADREYQSLMQELGGGSA 379
BLAST of CCHC-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q4WXV6|BBP_ASPFU (Branchpoint-bridging protein OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=bbp PE=3 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 2.011e-46 Identity = 93/249 (37.35%), Postives = 145/249 (58.23%), Query Frame = 1 Query: 628 EVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHADKMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSAPLPGEDEPLHAYITSMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETDG--------LNKLKILSEAQSIATNTIICSLCGGTGHLPRDC 1350 E Y++ ++I ++ KL + R+PSP P Y + G+R+NT+EYR R+R+E+ + L+ + P+ P +D + +EKV++P +DYP+INF GL+IGPRG T K +E E+G KI +RGKGS K GK +A ++E LH I + + E V++A + + +I+ PE QN+L++NQ+++LA LNGT R+ + + K Q T IIC +CG GH+ RDC Sbjct: 98 EAYTLHLRIEEISQKLRINDVVPADGD--RSPSPPPQYDNFGRRVNTREYRYRKRLEDERHKLVEKAMKTIPNYHPPSDYRRPTKTQEKVYVPVNDYPEINFIGLLIGPRGNTLKKMEAESGAKIAIRGKGSVKEGKGRSDAAHASNQEEDLHCLIMADTEEKVNKAKKLVHNVIETAASIPEGQNELKRNQLRELAALNGTLRDDENQACQNCGQIGHRKYDCPEQRNFTANIICRVCGNAGHMARDC 344
BLAST of CCHC-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q8NIW7|BBP_NEUCR (Branchpoint-bridging protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=bbp-1 PE=3 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 2.308e-46 Identity = 95/249 (38.15%), Postives = 145/249 (58.23%), Query Frame = 1 Query: 628 EVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHADKMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSAPLPGEDEPLHAYITSMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETDG--------LNKLKILSEAQSIATNTIICSLCGGTGHLPRDC 1350 E Y++ ++I +T KL + R+PSP P Y + G+R+NT+EYR R+++E+ + LI + P+ P +D + +EKV++P +DYP+INF GL+IGPRG T K +E E+G KI +RGKGS K GK +A ++E LH I + + E V++A + I II+ PE QN+L++NQ+++LA LNGT R+ + + K + T IIC +CG GH+ RDC Sbjct: 113 EAYTLHLRIEEITQKLKIDDVVPADGD--RSPSPAPQYDNHGRRVNTREYRYRKKLEDERHKLIEKAMKTIPNYHPPSDYRRPTKTQEKVYVPVNDYPEINFIGLLIGPRGNTLKKMETESGAKIAIRGKGSVKEGKGRSDAAHSSNQEEDLHCLIMADTEEKVNKAKKLIHNIIETAASIPEGQNELKRNQLRELAALNGTLRDDENQACQNCGQIGHRKYDCPEKQNYTANIICRVCGNAGHMARDC 359
BLAST of CCHC-type domain-containing protein vs. TrEMBL
Match: A4V6J6 (SF1 protein (Fragment) OS=Dugesia japonica OX=6161 PE=2 SV=1) HSP 1 Score: 420.239 bits (1079), Expect = 4.307e-141 Identity = 225/250 (90.00%), Postives = 232/250 (92.80%), Query Frame = 1 Query: 358 SRKEKPIKQENNEYSETQSSKRISPKKETYDSYHDSQIFVKQESLVKQEASVKTEDSDNNXXXXXXXXXXXXXXXXGQAKVPLYLKPDDAEVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHADKMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSAPLPGEDEPLHAYITSMS 1107 +RK KPIK+E+ Y+E SSKR SPKKE +D +SQ KQES VKQE SVKTEDSD NSEKAARKRKRESKWSSGQAKVPLYLKPDDAEVYSIQIQINSLTTKLAQQNYTEEIE MCR+ SPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHADKMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSAPLPGEDEPLHAYITSMS Sbjct: 3 TRKRKPIKEESI-YTEVFSSKRFSPKKEEFDYQPESQSLFKQESYVKQECSVKTEDSDGNSEKAARKRKRESKWSSGQAKVPLYLKPDDAEVYSIQIQINSLTTKLAQQNYTEEIETMCRSASPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHADKMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSAPLPGEDEPLHAYITSMS 251
BLAST of CCHC-type domain-containing protein vs. TrEMBL
Match: A0A504YE84 (Splicing factor 1 OS=Fasciola gigantica OX=46835 GN=FGIG_05464 PE=4 SV=1) HSP 1 Score: 288.115 bits (736), Expect = 8.367e-86 Identity = 144/294 (48.98%), Postives = 204/294 (69.39%), Query Frame = 1 Query: 595 KVPLYLKPDDAEVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHAD-KMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNG-GSAPLPGEDEPLHAYITSMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETDGLNKLKILSEAQSIATNTIICSLCGGTGHLPRDCKVNSNEIPMME----FPVQHVQLEGEYNNFINELGIDEAS 1458 ++P L P +Y IQ+QI ++ +L + R+PSP+P+Y DGKR+NT+EYR R++MEE + +L+ +L L PD P AD K RI +KVFIPQD++PDINF GL+IGPRG T K LEKETG K+++RGKGS K GKL P+PGEDEPLHA++++ + E+V +AV+KI +II+ GIE PE QNDLR+ Q+++LA+LNGT RE +GL KL+ ++EAQ+IATN I C +CGG GHL +DCK N + + ++ P + +++ EY+ + ELG+ AS Sbjct: 55 QLPPNLTPQQERIYIIQLQIEDISRRLKCGDLGIPKNPEDRSPSPEPIYSSDGKRLNTREYRTRKKMEEERHSLVQQLTELNPDYKPPADYKPPQNRITDKVFIPQDNHPDINFVGLLIGPRGNTLKALEKETGAKVIIRGKGSVKEGKLGRRDGLPMPGEDEPLHAFVSAPTAEAVQKAVKKINEIIRQGIEVPESQNDLRRAQLRELALLNGTLREHEGLMKLRAMAEAQTIATNKIHCGICGGAGHLSQDCKANLSAMAYIDQLNNNPTERAKMDSEYSALMAELGVGAAS 348
BLAST of CCHC-type domain-containing protein vs. TrEMBL
Match: A0A0R3SKU2 (CCHC-type domain-containing protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS5555 PE=4 SV=1) HSP 1 Score: 285.034 bits (728), Expect = 3.352e-85 Identity = 145/289 (50.17%), Postives = 197/289 (68.17%), Query Frame = 1 Query: 595 KVPLYLKPDDAEVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHAD-KMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKL-NGGSAPLPGEDEPLHAYITSMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETDGLNKLKILSEAQSIATNTIICSLCGGTGHLPRDCKVNSNEIPMMEF---PVQHVQLEGEYNNFINELGI 1446 ++P L PD ++Y +Q+QI LT +L + R+PSP+PVY DGKR+NT+EYR R+ MEE + N I ++ L P+ P D + +I +K+FIPQDD+P INF GL+IGPRG T K LEKETG KI++RGKGS K GKL P+PGEDEPLHA+I++ + ES +AVEKI+ II+ GIE PE +NDLRK Q+++LA+LNGT RE +GL +L+ LSEAQ+IATN I CSLCGG GHL DCK+ + + + P + +++ EY + ELG+ Sbjct: 50 QLPPNLTPDQEKMYILQLQIEDLTRRLKTGDLGIPANPEDRSPSPEPVYSSDGKRLNTREYRTRKTMEENRHNFIQQMLELNPEYKPPIDYRAPNNKITDKIFIPQDDHPHINFVGLLIGPRGNTLKALEKETGAKIIIRGKGSVKDGKLVRRDGMPIPGEDEPLHAFISATTPESCQKAVEKIESIIRQGIEVPEGENDLRKAQLRELALLNGTLREHEGLARLRALSEAQNIATNKIQCSLCGGFGHLASDCKLRDPNVSVEQLGINPTERAKMDSEYTALMAELGV 338
BLAST of CCHC-type domain-containing protein vs. TrEMBL
Match: A0A0R3TEP9 (KH domain-containing protein OS=Rodentolepis nana OX=102285 GN=HNAJ_LOCUS5536 PE=4 SV=1) HSP 1 Score: 277.33 bits (708), Expect = 1.131e-83 Identity = 142/290 (48.97%), Postives = 195/290 (67.24%), Query Frame = 1 Query: 592 AKVPLYLKPDDAEVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHAD-KMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKL-NGGSAPLPGEDEPLHAYITSMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETDGLNKLKILSEAQSIATNTIICSLCGGTGHLPRDCKVNSNEIPMMEF---PVQHVQLEGEYNNFINELGI 1446 ++P L + ++Y +Q+QI LT +L + R+PSP+PVY DGKR+NT+EYR R+ MEE + N I ++ L P+ P D + +I +K+FIPQDD+P INF GL+IGPRG T K LEKETG KI++RGKGS K GKL P+PGEDEPLHA+I++ + ES +AVEKI+ II+ GIE PE +NDLRK Q+++LA+LNGT RE +GL +L+ LSEAQ+IATN I CSLC G GHL DCK+ + + + P + +++ EY + ELG+ Sbjct: 49 TQLPPNLTAEQEKMYILQLQIEDLTRRLKTGDLGISANPEDRSPSPEPVYSSDGKRLNTREYRTRKTMEENRHNFIQQMLELNPEYKPPIDYRAPNNKITDKIFIPQDDHPHINFVGLLIGPRGNTLKALEKETGAKIIIRGKGSVKDGKLVRRDGMPIPGEDEPLHAFISATTPESCQKAVEKIESIIRQGIEVPEGENDLRKAQLRELALLNGTLREHEGLARLRALSEAQNIATNKIQCSLCLGLGHLASDCKLRDPNVSVEQLGINPTERAKMDSEYTALMAELGV 338
BLAST of CCHC-type domain-containing protein vs. TrEMBL
Match: A0A068Y7E6 (Zinc finger protein OS=Echinococcus multilocularis OX=6211 PE=4 SV=1) HSP 1 Score: 281.567 bits (719), Expect = 1.418e-83 Identity = 143/303 (47.19%), Postives = 200/303 (66.01%), Query Frame = 1 Query: 595 KVPLYLKPDDAEVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHAD-KMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKL-NGGSAPLPGEDEPLHAYITSMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETDGLNKLKILSEAQSIATNTIICSLCGGTGHLPRDCKVNSNEIPMMEF---PVQHVQLEGEYNNFINELGIDEASAKPAYLGFMP 1488 ++P L P ++Y +Q+QI +T +L + R+PSP+PVY DGKR+NT+EYR R+ MEE + N I ++ L PD P D + +I +K+FIPQ+D+P INF GL+IGPRG T K LEKETG KI++RGKGS K GKL P+PGEDEPLHA++++ + ES +AVEKI+ II+ GIE PE +NDLRK+Q+++LA+LNGT RE +GL +L+ ++EAQ+IATN I CS+CGG GHL DCK+ + M P++ +++ EY + ELG+ A G P Sbjct: 51 QLPPNLTPAQEKMYILQLQIEDITRRLKTGDLGIPANPEDRSPSPEPVYSSDGKRLNTREYRTRKTMEENRHNFIQQMLELNPDYKPPIDYRAPQNKITDKIFIPQEDHPHINFVGLLIGPRGNTLKALEKETGAKIIIRGKGSVKDGKLIRRDGMPIPGEDEPLHAFVSAATPESCQKAVEKIQSIIRQGIEVPEGENDLRKSQLRELALLNGTLREHEGLARLRAMAEAQNIATNKIQCSMCGGFGHLASDCKLRDPSVTMEHMGINPMERAKMDSEYTALMAELGVGYGGAATLPPGVAP 353
BLAST of CCHC-type domain-containing protein vs. Ensembl Cavefish
Match: sf1 (splicing factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2492]) HSP 1 Score: 245.743 bits (626), Expect = 2.980e-71 Identity = 140/305 (45.90%), Postives = 191/305 (62.62%), Query Frame = 1 Query: 598 VPLYLKPDDAEVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHAD-KMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSAP-LPGEDEPLHAYITSMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETDGLNKLKIL-----SEAQSIATNTIICSLCGGTGHLPRDCKVNSNEIPMMEFPVQHVQ----LEGEYNNFINELGIDEASAKPAYLG 1479 +P L + Y +Q+QI LT KL + + R+PSP+P+Y +GKR+NT+EYR R+++EE + +LI + L P+ P AD K R+ +KV IPQD+YP+INF GL+IGPRG T K++EKE KI++RGKGS K GK+ LPGEDEPLHA +T+ + E+V +AVE+I+ I++ GIE PE QNDLRK Q+++LA LNGT RE D +IL SE +SI TNT +C+ CGG GH+ DCK S+ P Q Q ++ EY + + ELG EA PA G Sbjct: 192 IPPGLTREQERAYIVQLQIEDLTRKLRTGDLGIPVNPEDRSPSPEPIYNSEGKRLNTREYRTRKKLEEERHSLITEMVGLNPEFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECCAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDN----RILRPWQSSEPRSI-TNTTLCTKCGGAGHIASDCKFTSSYTQRQGEPPQSAQDKARMDKEYLSLMAELG--EAPVPPAGGG 489
BLAST of CCHC-type domain-containing protein vs. Ensembl Cavefish
Match: qki2 (protein quaking-B [Source:NCBI gene;Acc:103029551]) HSP 1 Score: 100.523 bits (249), Expect = 8.722e-23 Identity = 58/132 (43.94%), Postives = 85/132 (64.39%), Query Frame = 1 Query: 877 ARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGK---LNGGSAPLPGEDEPLHAYIT---SMSRESV--DRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETD 1248 A+++EK+++P +YPD NF G I+GPRG+T K LE ETG KI++RGKGS + K N G +E LH IT S +R + RAVE++KK++ + E ++ L+K Q+ +LAILNGTYR+ + Sbjct: 80 AQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDSQNRAEIKLKRAVEEVKKLL---VPAAEGEDSLKKMQLMELAILNGTYRDAN 208
BLAST of CCHC-type domain-containing protein vs. Ensembl Cavefish
Match: qki2 (protein quaking-B [Source:NCBI gene;Acc:103029551]) HSP 1 Score: 100.523 bits (249), Expect = 9.696e-23 Identity = 58/132 (43.94%), Postives = 85/132 (64.39%), Query Frame = 1 Query: 877 ARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGK---LNGGSAPLPGEDEPLHAYIT---SMSRESV--DRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETD 1248 A+++EK+++P +YPD NF G I+GPRG+T K LE ETG KI++RGKGS + K N G +E LH IT S +R + RAVE++KK++ + E ++ L+K Q+ +LAILNGTYR+ + Sbjct: 80 AQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDSQNRAEIKLKRAVEEVKKLL---VPAAEGEDSLKKMQLMELAILNGTYRDAN 208
BLAST of CCHC-type domain-containing protein vs. Ensembl Cavefish
Match: qki2 (protein quaking-B [Source:NCBI gene;Acc:103029551]) HSP 1 Score: 100.138 bits (248), Expect = 1.181e-22 Identity = 58/132 (43.94%), Postives = 85/132 (64.39%), Query Frame = 1 Query: 877 ARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGK---LNGGSAPLPGEDEPLHAYIT---SMSRESV--DRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETD 1248 A+++EK+++P +YPD NF G I+GPRG+T K LE ETG KI++RGKGS + K N G +E LH IT S +R + RAVE++KK++ + E ++ L+K Q+ +LAILNGTYR+ + Sbjct: 80 AQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDSQNRAEIKLKRAVEEVKKLL---VPAAEGEDSLKKMQLMELAILNGTYRDAN 208
BLAST of CCHC-type domain-containing protein vs. Ensembl Cavefish
Match: qkib (QKI, KH domain containing, RNA binding b [Source:ZFIN;Acc:ZDB-GENE-081028-54]) HSP 1 Score: 95.5153 bits (236), Expect = 4.029e-21 Identity = 54/132 (40.91%), Postives = 82/132 (62.12%), Query Frame = 1 Query: 877 ARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGK---LNGGSAPLPGEDEPLHAYITSMSRES-----VDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETD 1248 +++EK+++P +YPD NF G I+GPRG+T K LE ETG KI++RGKGS + K N G +E LH IT ++ + RAVE++ K++ + E ++ L+K Q+ +LAILNGTYR+ + Sbjct: 80 VQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKVRANRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVNKLL---VPAAEGEDSLKKMQLMELAILNGTYRDAN 208
BLAST of CCHC-type domain-containing protein vs. Ensembl Sea Lamprey
Match: sf1 (splicing factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2492]) HSP 1 Score: 232.646 bits (592), Expect = 1.585e-67 Identity = 126/286 (44.06%), Postives = 185/286 (64.69%), Query Frame = 1 Query: 598 VPLYLKPDDAEVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHAD-KMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSA-PLPGEDEPLHAYITSMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYR--ETDGLNKLKILSEAQSIATNTIICSLCGGTGHLPRDCKVNSNEIPMMEFPVQHVQLEGEYNNFINELG 1443 +P L D Y +Q+QI + KL + R+PSP+P+Y ++GKR+NT+EYR R+++E+ + LI +Y L PD P AD K +I E++ IPQD++PDINF GLIIGPRG T K +EKE KI++RGKGS K GK+ PLPGEDEPLHA +T+ ++++V +AV++IK I++ GIE PE QN+LR+ Q+++LA LNGT R E+ L + E +S+ TN IC+ CGG GH+ DC+++S P + + +++ EY + + ELG Sbjct: 110 LPPGLNKDQERAYIVQLQIEDMNRKLRTGDLGIPPNPEERSPSPEPIYNNEGKRLNTREYRTRKKIEDDRHVLIQEMYRLNPDYKPPADYKPPAQKISERIMIPQDEHPDINFIGLIIGPRGNTLKKIEKECNAKIMIRGKGSVKEGKIGHKPGQPLPGEDEPLHALVTASTQDNVRKAVDQIKNILKQGIEVPEGQNELRRMQLRELARLNGTLRDDESRVLRPWQAPPETRSV-TNMTICNRCGGAGHIASDCRISSMGPP--QGNQERARMDEEYLSLMAELG 392
BLAST of CCHC-type domain-containing protein vs. Ensembl Sea Lamprey
Match: khdrbs2 (KH domain containing, RNA binding, signal transduction associated 2 [Source:NCBI gene;Acc:768147]) HSP 1 Score: 62.3882 bits (150), Expect = 8.807e-11 Identity = 38/127 (29.92%), Postives = 67/127 (52.76%), Query Frame = 1 Query: 880 RIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKL-----NGGSAPLPGEDEPLHAYITSMSRES-----VDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNG 1230 ++ E+V IP +P NF G ++GPRG + K +++ETGTK+ + GKGS + L G E LH I + S + A++++KK + P+ +++R+ Q+++L+ L G Sbjct: 36 KLAERVIIPAKQHPKFNFVGKLLGPRGNSLKRMQEETGTKMSILGKGSMRDKALEEEMRKSGENKYAHLSEELHVLIEVFAPPSEAYSRMGHALDEVKKYL-----VPDYNDEIRQEQLRELSFLKG 157
BLAST of CCHC-type domain-containing protein vs. Ensembl Sea Lamprey
Match: KHDRBS3 (KH RNA binding domain containing, signal transduction associated 3 [Source:HGNC Symbol;Acc:HGNC:18117]) HSP 1 Score: 61.2326 bits (147), Expect = 1.191e-10 Identity = 39/127 (30.71%), Postives = 68/127 (53.54%), Query Frame = 1 Query: 880 RIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAK-----PGKLNGGSAPLPGEDEPLHAYIT-----SMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNG 1230 ++ E+V IP +P NF G ++GPRG + K L++ETGTK+ + GKGS + G A +E LH I S + + A++++KK + P+ +++R+ Q+++L+ L G Sbjct: 36 KLIERVIIPVRQHPKFNFIGKLLGPRGNSLKRLKEETGTKLSILGKGSMRDRDKEEDLRKSGEAKYAHLNEDLHVLIEVFAPPSQAYRRMGHALDEVKKYL-----VPDYNDEIRQQQLRELSFLKG 157
BLAST of CCHC-type domain-containing protein vs. Ensembl Sea Lamprey
Match: khdrbs1a (KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]) HSP 1 Score: 61.6178 bits (148), Expect = 2.010e-10 Identity = 41/128 (32.03%), Postives = 66/128 (51.56%), Query Frame = 1 Query: 880 RIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGS----AKPGKL-NGGSAPLPGEDEPLHAYITSM-----SRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGT 1233 ++ EKV IP +P NF G ++GP+G T K L+ ETGT++ + GKG AK +L N G A +E LH I + + A+E++KK P+ +++ + Q+ ++ LNG Sbjct: 60 KLAEKVLIPAKQHPKFNFVGKLLGPQGNTLKRLQVETGTRMAIMGKGCMKDRAKEEELRNSGEAKYVHLNEELHVLIEVYAPLPEAYSRMGHALEEVKKFFN-----PDYNDEICQEQLMEMTYLNGV 182
BLAST of CCHC-type domain-containing protein vs. Ensembl Yeast
Match: MSL5 (Component of commitment complex; which defines first step in splicing pathway; essential protein that interacts with Mud2p and Prp40p, forming a bridge between the intron ends; also involved in nuclear retention of pre-mRNA; relocalizes to the cytosol in response to hypoxia [Source:SGD;Acc:S000004106]) HSP 1 Score: 162.54 bits (410), Expect = 5.033e-44 Identity = 94/261 (36.02%), Postives = 144/261 (55.17%), Query Frame = 1 Query: 628 EVYSIQI--QINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHADKMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSAPLPGE---DEPLHAYITSMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETD------GLNKLKILSEAQSIATNT--IICSLCGGTGHLPRDCKVNSNEI 1371 ++YS Q+ +I +T KL ++ R+PSP PVY GKR NT+E R R+++E+ + L+ P VP D + ++K +IP D YPD+NF GL++GPRG T + L++++ KI +RG+GS K GK N P PG ++PLH I + S + + + ++ + I+ + PE QNDL++ Q+++LA LNGT RE + GL K N I+C +CG TGH RDC +S + Sbjct: 62 QIYSYQVMFRIQEITIKLRTNDFVPPSRKN-RSPSPPPVYDAQGKRTNTREQRYRKKLEDERIKLVEIALKTIPYFVPPDDYKRPTKFQDKYYIPVDQYPDVNFVGLLLGPRGRTLRKLQEDSNCKIAIRGRGSVKEGK-NASDLP-PGAMNFEDPLHCLIIADSEDKIQKGIKVCQNIVIKAVTSPEGQNDLKRGQLRELAELNGTLREDNRPCPICGLKDHKRYDCPNRKIPNIQGIVCKICGQTGHFSRDCNSSSQRM 319
BLAST of CCHC-type domain-containing protein vs. Ensembl Nematostella
Match: EDO45484 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RSV9]) HSP 1 Score: 144.436 bits (363), Expect = 3.843e-39 Identity = 78/178 (43.82%), Postives = 112/178 (62.92%), Query Frame = 1 Query: 598 VPLYLKPDDAEVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHAD-KMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGG---SAPLPGEDEPLHAYITSMSRESV 1119 +P LKPD + Y +Q++I ++ L + R+PSP+P+Y DGKR+NT+++R R+R+E+ + I + + PD P AD K +I++KV IPQD+ P++NF GL+IGPRG T K++EKET KI++RGKGS K GK G GEDEPLHA +T + ESV Sbjct: 84 LPPNLKPDQQKAYLMQLRIEEISRMLRTGDLGIPDNPEDRSPSPEPIYNTDGKRLNTRDFRVRKRLEDERHKFIQDMMKINPDFKPPADYKPPLIKIQDKVMIPQDENPEVNFIGLLIGPRGNTLKNMEKETNAKIMIRGKGSIKDGKQGRGRDMQLMNSGEDEPLHALVTGPTAESV 261
BLAST of CCHC-type domain-containing protein vs. Ensembl Nematostella
Match: EDO30297 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T170]) HSP 1 Score: 88.9669 bits (219), Expect = 1.996e-20 Identity = 50/131 (38.17%), Postives = 79/131 (60.31%), Query Frame = 1 Query: 877 ARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSAPLPG---EDEPLHAYITSMSRES-----VDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRET 1245 ++ EKV+ P ++P NF G +IGPRGMT +++E TG K+L+RGKGS K KL P DE LH I+ E +++AVE+++ +++ E +++++K Q+K LA+LNGT RE+ Sbjct: 51 VKLVEKVYAPVKEFPKFNFVGRVIGPRGMTLREIESTTGCKLLVRGKGSMKDKKLEEEKRGQPNYEHLDEDLHVLISCEDTEERCHTRLEKAVERVQSLLRP---VEEGEDEIKKKQLKDLALLNGTLRES 178
BLAST of CCHC-type domain-containing protein vs. Ensembl Nematostella
Match: EDO44127 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RWI4]) HSP 1 Score: 70.4774 bits (171), Expect = 3.334e-14 Identity = 46/127 (36.22%), Postives = 68/127 (53.54%), Query Frame = 1 Query: 877 ARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSA----KPGKLNGGSAPLPGE-DEPLHAYIT-----SMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILN 1227 ++ EKVFIP D+P NF G ++GPRG T K L+ TGTK+ + GKGS K +L P E LH I + + A+E+IKK + PE+ +++ + QM+++AILN Sbjct: 47 VKLSEKVFIPVKDHPKFNFVGKLLGPRGNTFKRLQNSTGTKMSILGKGSMRDKEKEEELRATEDPKYAHLGEELHVLIEVEAPPGQAHARLGIAIEEIKKYL-----IPEMNDEIHQEQMREMAILN 168
BLAST of CCHC-type domain-containing protein vs. Ensembl Nematostella
Match: EDO28641 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T5W9]) HSP 1 Score: 63.5438 bits (153), Expect = 4.651e-12 Identity = 28/54 (51.85%), Postives = 39/54 (72.22%), Query Frame = 1 Query: 880 RIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKL 1041 ++ EKV+ P ++P NF G +IGPRGMT +++E TG K+L+RGKGS K KL Sbjct: 91 KLVEKVYAPVKEFPKFNFVGRVIGPRGMTLREIESTTGCKLLVRGKGSMKDKKL 144
BLAST of CCHC-type domain-containing protein vs. Ensembl Medaka
Match: sf1 (splicing factor 1 [Source:NCBI gene;Acc:101157648]) HSP 1 Score: 240.736 bits (613), Expect = 4.535e-70 Identity = 137/296 (46.28%), Postives = 184/296 (62.16%), Query Frame = 1 Query: 598 VPLYLKPDDAEVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHAD-KMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSAP-LPGEDEPLHAYITSMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETDGLNKLKIL-----SEAQSIATNTIICSLCGGTGHLPRDCKVNSNEIPMMEF---PVQHVQ----LEGEYNNFINELG 1443 +P L D Y +Q+QI LT KL + + R+PSP+P+Y +GKR+NT+EYR R+++EE + LI + L PD P AD K R+ +KV IPQD+YP+INF GL+IGPRG T K++EKE KI++RGKGS K GK+ LPGEDEPLHA +T+ + E+V +AVE+I+ I++ GIE PE QNDLRK Q+++LA LNGT RE D +IL SE +SI TNT +C+ CGG GH+ DCK S P Q Q ++ EY + + ELG Sbjct: 111 IPPGLTRDQERAYIVQLQIEDLTRKLRTGDLGIPVNPEDRSPSPEPIYNSEGKRLNTREYRTRKKIEEERHALITEMIGLNPDFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECCAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDN----RILRPWQNSEPRSI-TNTTLCTKCGGAGHISSDCKYTSTFAAHRATGGEPPQSAQDKARMDKEYLSLMAELG 401
BLAST of CCHC-type domain-containing protein vs. Ensembl Medaka
Match: sf1 (splicing factor 1 [Source:NCBI gene;Acc:101157648]) HSP 1 Score: 240.736 bits (613), Expect = 5.353e-70 Identity = 137/296 (46.28%), Postives = 184/296 (62.16%), Query Frame = 1 Query: 598 VPLYLKPDDAEVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHAD-KMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSAP-LPGEDEPLHAYITSMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETDGLNKLKIL-----SEAQSIATNTIICSLCGGTGHLPRDCKVNSNEIPMMEF---PVQHVQ----LEGEYNNFINELG 1443 +P L D Y +Q+QI LT KL + + R+PSP+P+Y +GKR+NT+EYR R+++EE + LI + L PD P AD K R+ +KV IPQD+YP+INF GL+IGPRG T K++EKE KI++RGKGS K GK+ LPGEDEPLHA +T+ + E+V +AVE+I+ I++ GIE PE QNDLRK Q+++LA LNGT RE D +IL SE +SI TNT +C+ CGG GH+ DCK S P Q Q ++ EY + + ELG Sbjct: 111 IPPGLTRDQERAYIVQLQIEDLTRKLRTGDLGIPVNPEDRSPSPEPIYNSEGKRLNTREYRTRKKIEEERHALITEMIGLNPDFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECCAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDN----RILRPWQNSEPRSI-TNTTLCTKCGGAGHISSDCKYTSTFAAHRATGGEPPQSAQDKARMDKEYLSLMAELG 401
BLAST of CCHC-type domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000045137.1 (protein quaking-B-like [Source:NCBI gene;Acc:101161529]) HSP 1 Score: 99.3673 bits (246), Expect = 2.103e-22 Identity = 54/132 (40.91%), Postives = 86/132 (65.15%), Query Frame = 1 Query: 877 ARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGK---LNGGSAPLPGEDEPLHAYIT-----SMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETD 1248 A+++EK+++P +YPD NF G I+GPRG+T K LE ETG KI++RGKGS + K +N G +E LH IT + ++ + RA+ ++KK++ + E +++L+K Q+ +LAILNGTYR+ + Sbjct: 82 AQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEMNRGKPNWEHLNEDLHVLITVEDTHNRAKIKLQRAINEVKKLL---VPAAEGEDNLKKMQLMELAILNGTYRDAN 210
BLAST of CCHC-type domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000044982.1 (protein quaking-B-like [Source:NCBI gene;Acc:101161529]) HSP 1 Score: 99.3673 bits (246), Expect = 2.285e-22 Identity = 54/132 (40.91%), Postives = 86/132 (65.15%), Query Frame = 1 Query: 877 ARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGK---LNGGSAPLPGEDEPLHAYIT-----SMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETD 1248 A+++EK+++P +YPD NF G I+GPRG+T K LE ETG KI++RGKGS + K +N G +E LH IT + ++ + RA+ ++KK++ + E +++L+K Q+ +LAILNGTYR+ + Sbjct: 82 AQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEMNRGKPNWEHLNEDLHVLITVEDTHNRAKIKLQRAINEVKKLL---VPAAEGEDNLKKMQLMELAILNGTYRDAN 210
BLAST of CCHC-type domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000033069.1 (protein quaking-B-like [Source:NCBI gene;Acc:101161529]) HSP 1 Score: 99.3673 bits (246), Expect = 2.477e-22 Identity = 54/132 (40.91%), Postives = 86/132 (65.15%), Query Frame = 1 Query: 877 ARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGK---LNGGSAPLPGEDEPLHAYIT-----SMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETD 1248 A+++EK+++P +YPD NF G I+GPRG+T K LE ETG KI++RGKGS + K +N G +E LH IT + ++ + RA+ ++KK++ + E +++L+K Q+ +LAILNGTYR+ + Sbjct: 82 AQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEMNRGKPNWEHLNEDLHVLITVEDTHNRAKIKLQRAINEVKKLL---VPAAEGEDNLKKMQLMELAILNGTYRDAN 210
BLAST of CCHC-type domain-containing protein vs. Planmine SMEST
Match: SMESG000031867.1 (SMESG000031867.1) HSP 1 Score: 844.729 bits (2181), Expect = 0.000e+0 Identity = 460/462 (99.57%), Postives = 461/462 (99.78%), Query Frame = 1 Query: 169 NKSPXXXXXXXXXXXXXXXXXXXXEHSNDSKRERSPKRKRQDYSPESSYRKKHHKRDRSYSNSSRKEKPIKQENNEYSETQSSKRISPKKETYDSYHDSQIFVKQESLVKQEASVKTEDSDNNXXXXXXXXXXXXXXXXGQAKVPLYLKPDDAEVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHADKMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSAPLPGEDEPLHAYITSMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETDGLNKLKILSEAQSIATNTIICSLCGGTGHLPRDCKVNSNEIPMMEFPVQHVQLEGEYNNFINELGIDEASAKPAYLGFMPXXXXXXXXXXXXXFVRNFIFRS 1554 NKSPSRADHSSRKRKDKDRDYKRREHSNDSKRERSPKRKRQDYSPESSYRKKHHKRDRSYSNSSRKEKPIKQENNEYSETQSSKRISPKKETYDSYHDSQIFVKQESL+KQEASVKTEDSDNNSEKA RKRKRESKWSSGQAKVPLYLKPDDAEVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHADKMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSAPLPGEDEPLHAYITSMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETDGLNKLKILSEAQSIATNTIICSLCGGTGHLPRDCKVNSNEIPMMEFPVQHVQLEGEYNNFINELGIDEASAKPAYLGFMPQQSSGNSSQGASSFVRNFIFRS Sbjct: 45 NKSPSRADHSSRKRKDKDRDYKRREHSNDSKRERSPKRKRQDYSPESSYRKKHHKRDRSYSNSSRKEKPIKQENNEYSETQSSKRISPKKETYDSYHDSQIFVKQESLIKQEASVKTEDSDNNSEKATRKRKRESKWSSGQAKVPLYLKPDDAEVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHADKMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSAPLPGEDEPLHAYITSMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETDGLNKLKILSEAQSIATNTIICSLCGGTGHLPRDCKVNSNEIPMMEFPVQHVQLEGEYNNFINELGIDEASAKPAYLGFMPQQSSGNSSQGASSFVRNFIFRS 506
BLAST of CCHC-type domain-containing protein vs. Planmine SMEST
Match: SMESG000060577.1 (SMESG000060577.1) HSP 1 Score: 587.8 bits (1514), Expect = 0.000e+0 Identity = 301/425 (70.82%), Postives = 358/425 (84.24%), Query Frame = 1 Query: 280 RKRQDYSPESSYRKKHHKRDRSYSNSSRKEKPIKQENNEYSETQSSKRISPKKETYDSYHDSQIFVKQESLVKQEASVKTEDSDNNXXXXXXXXXXXXXXXXGQAKVPLYLKPDDAEVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHADKMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSAPLPGEDEPLHAYITSMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETDGLNKLKILSEAQSIATNTIICSLCGGTGHLPRDCKVNSNEIPMMEFPVQHVQLEGEYNNFINELGIDEASAKPAYLGFMPXXXXXXXXXXXXXFVRNFIFRS 1554 RKR ++S + S R KH KR+RS + +R E +K EN E SE +SSKR +D++ + + +++ + + + +N+ ++ RKRKRESKW +GQAKVP+YL +DAEVYSIQIQ+NS+TTKL Q+NY EEIEAMCR PSPDPVY H+GKRINTKE+RARER+++RKRNLILRL+ALRP+LVPHADKM+GARIEE++FIPQ+DYPDINFAGLIIGPRGMTQK+LEKETGTKIL+RGKGSAKPG+ NG APLPGEDEPLHAY+TSMSRESVD+A EKI+KIIQDGIEFPELQNDLRKNQMKQLAI NGTYRET+GLNKLKIL EAQSI TNTIICSLCGGTGHLPRDC VNSN IPMM FP QH +LEGEY+NFINELG+D KPA+LGF+PQ +SGN++QG SSFV+NFIFR+ Sbjct: 68 RKRHEHSRDHSDRIKHRKRERSNFSPTRNESLMKLENFENSEHRSSKRTD---------YDTRRYSPTQHILRSDHKEENFFNSDNNSESTRKRKRESKWGTGQAKVPMYLNSEDAEVYSIQIQLNSVTTKLTQRNYAEEIEAMCREPSPDPVYNHEGKRINTKEFRARERLDDRKRNLILRLHALRPELVPHADKMIGARIEERIFIPQEDYPDINFAGLIIGPRGMTQKELEKETGTKILIRGKGSAKPGQFNGDGAPLPGEDEPLHAYVTSMSRESVDKAAEKIRKIIQDGIEFPELQNDLRKNQMKQLAIFNGTYRETEGLNKLKILGEAQSIVTNTIICSLCGGTGHLPRDCLVNSNLIPMMHFPPQHAKLEGEYDNFINELGVDGTDTKPAFLGFIPQHNSGNTTQGTSSFVKNFIFRN 483
BLAST of CCHC-type domain-containing protein vs. Planmine SMEST
Match: SMESG000031862.1 (SMESG000031862.1) HSP 1 Score: 432.565 bits (1111), Expect = 1.019e-147 Identity = 218/321 (67.91%), Postives = 256/321 (79.75%), Query Frame = 1 Query: 598 VPLYLKPDDAEVYSIQIQINSLTTKLAQQNYTEEIEAMCRAPSPDPVYGHDGKRINTKEYRARERMEERKRNLILRLYALRPDLVPHADKMMGARIEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSAPLPGEDEPLHAYITSMSRESVDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRETDGLNKLKILSEAQSIATNTIICSLCGGTGHLPRDCKVNSN--EIPMMEFPVQHVQLEGEYNNFINELGID-EASAKPAYLGFMPXX-XXXXXXXXXXXFVRNFIF 1548 +P + P DAEVY IQ+QI +T+KL +QNYT EIEAM R PSPDP+YG DGKRINTKEYRARER+E+RK+ L+L+L+ LRPDLVPH DK+ G R EEKVFIPQDDYPDIN GLIIGPRG+T KDLEKE KI++RGKGS GK+N + PLPGEDE LHAYITS S+E V++A ++I KIIQ+GI+FPEL+NDLRKNQMKQLAILNGTYRETDGLNKLK+L EAQS TNTIICSLCGGTGHLPRDCKVN N E P + P Q L+GEY +F+NELG + + PAYLGF+P+ S GA+SFVR F+F Sbjct: 48 IPPNMNPKDAEVYIIQLQITDITSKLQKQNYTSEIEAMTRLPSPDPIYGPDGKRINTKEYRARERLEDRKKQLMLKLHTLRPDLVPHTDKI-GGRFEEKVFIPQDDYPDINLIGLIIGPRGLTLKDLEKEYNVKIIIRGKGSIHNGKVNVNNVPLPGEDECLHAYITSFSKECVEKATDRINKIIQEGIDFPELENDLRKNQMKQLAILNGTYRETDGLNKLKMLGEAQSCVTNTIICSLCGGTGHLPRDCKVNQNPAEFPPLNIP-QSSPLDGEYKSFMNELGSEGRPTVLPAYLGFLPEFPPPNASVDGANSFVRKFVF 366
BLAST of CCHC-type domain-containing protein vs. Planmine SMEST
Match: SMESG000068399.1 (SMESG000068399.1) HSP 1 Score: 93.5893 bits (231), Expect = 2.162e-20 Identity = 52/134 (38.81%), Postives = 83/134 (61.94%), Query Frame = 1 Query: 883 IEEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKP--------GKLNGGSAPLPGEDEPLHAYITSMSRES-----VDRAVEKIKKIIQDGIEFPELQNDLRKNQMKQLAILNGTYRET 1245 ++EKV++P D+ P+ NF G I+GPRG+T K LE+E K+++RGKGS + GK N ++ LH IT E+ + A++ I+K I+ GI+ P+ ++D++K Q+ +LAI+NGTYR+T Sbjct: 92 LQEKVYVPVDENPNYNFIGRILGPRGLTAKQLEQELQCKLMIRGKGSLRNKEKEDELRGKPNWEHL-----NDKLHINITVEDYENRAVIKLKWALDAIEKFIEQGIKMPDGEDDIKKRQLMELAIINGTYRDT 220
BLAST of CCHC-type domain-containing protein vs. Planmine SMEST
Match: SMESG000080790.1 (SMESG000080790.1) HSP 1 Score: 71.2478 bits (173), Expect = 4.487e-13 Identity = 45/126 (35.71%), Postives = 71/126 (56.35%), Query Frame = 1 Query: 886 EEKVFIPQDDYPDINFAGLIIGPRGMTQKDLEKETGTKILLRGKGSAKPGKLNGGSAPLPGE---DEPLHAYITSMSRES-VDRAVEKIKK----IIQDGIEFPELQNDLRKNQMKQLAILNGTYR 1239 +EK+F+P + P+ NF G I+GPRG T K LE++ KI++RG+GS + + P +E LH I E+ VD + IK+ IQ+G+ PE + L++ Q+ +L+ILN + R Sbjct: 64 QEKIFLPVKENPNYNFVGRILGPRGYTAKQLEQKLDCKIMIRGRGSMRDQNKEEQNRNKPNWEHLNEDLHVLINISDCENRVDEKMNTIKEAISSFIQEGLNTPESLDTLKQMQLMELSILNESDR 189 The following BLAST results are available for this feature:
BLAST of CCHC-type domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of CCHC-type domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of CCHC-type domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of CCHC-type domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of CCHC-type domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of CCHC-type domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of CCHC-type domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of CCHC-type domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of CCHC-type domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of CCHC-type domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 4
BLAST of CCHC-type domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 1
BLAST of CCHC-type domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 4
BLAST of CCHC-type domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of CCHC-type domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30005962 ID=SMED30005962|Name=CCHC-type domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1913bpback to top protein sequence of SMED30005962-orf-1 >SMED30005962-orf-1 ID=SMED30005962-orf-1|Name=SMED30005962-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=507bp MTRKDKSPSRRDRRRSSTDTDSYRRKQKDHRRRDRDRSSQESSRNKSPSRback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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