Transcriptional adapter 3

Overview


Name	Transcriptional adapter 3
Smed ID	SMED30005950
Length (bp)	1732

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of Transcriptional adapter 3 (SMED30005950) t-SNE clustered cells

Violin plots show distribution of expression levels for Transcriptional adapter 3 (SMED30005950) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Transcriptional adapter 3 (SMED30005950) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Transcriptional adapter 3 (SMED30005950) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30005950

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 52

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
neoblast	SMED30005950	h1SMcG0022397	SMED30035424	smed_20140614	PMID:29906446 Zeng et al., 2018
neoblast	SMED30005950	h1SMcG0022397	SMED30035424	smed_20140614	PMID:29906446 Zeng et al., 2018
X1 cell	SMED30005950	h1SMcG0022396	SmedASXL_008145	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
X2 cell	SMED30005950	h1SMcG0022396	SmedASXL_008145	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
X1 cell	SMED30005950	h1SMcG0022397	SmedASXL_005509	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
X2 cell	SMED30005950	h1SMcG0022397	SmedASXL_005509	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
X1 cell	SMED30005950	h1SMcG0022396	SmedASXL_008145	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
X2 cell	SMED30005950	h1SMcG0022396	SmedASXL_008145	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
X1 cell	SMED30005950	h1SMcG0022397	SmedASXL_005509	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
X2 cell	SMED30005950	h1SMcG0022397	SmedASXL_005509	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
nervous system	SMED30005950	h1SMcG0022397	dd_Smed_v4_4172_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
gut	SMED30005950	h1SMcG0022397	dd_Smed_v4_4172_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30005950	h1SMcG0022397	dd_Smed_v4_4172_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30005950	h1SMcG0022397	dd_Smed_v4_4172_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30005950	h1SMcG0022397	dd_Smed_v4_4172_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30005950	h1SMcG0022397	dd_Smed_v4_4172_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30005950	h1SMcG0022397	dd_Smed_v4_4172_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30005950	h1SMcG0022397	Contig18138	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30005950	h1SMcG0022397	Contig18138	newmark_ests	PMID:29674431 Fincher et al., 2018
nervous system	SMED30005950	h1SMcG0022397	dd_Smed_v4_4172_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
gut	SMED30005950	h1SMcG0022397	dd_Smed_v4_4172_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30005950	h1SMcG0022397	dd_Smed_v4_4172_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30005950	h1SMcG0022397	dd_Smed_v4_4172_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30005950	h1SMcG0022397	dd_Smed_v4_4172_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30005950	h1SMcG0022397	dd_Smed_v4_4172_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30005950	h1SMcG0022397	dd_Smed_v4_4172_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30005950	h1SMcG0022397	Contig18138	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30005950	h1SMcG0022397	Contig18138	newmark_ests	PMID:29674431 Fincher et al., 2018
gamma neoblast	SMED30005950	h1SMcG0022397	JQ425157.1	smed_ncbi_20240424	PMID:25017721 van Wolfswinkel et al., 2014
sigma neoblast	SMED30005950	h1SMcG0022397	JQ425157.1	smed_ncbi_20240424	PMID:25017721 van Wolfswinkel et al., 2014
gamma neoblast	SMED30005950	h1SMcG0022397	JQ425157.1	smed_ncbi_20240424	PMID:25017721 van Wolfswinkel et al., 2014
sigma neoblast	SMED30005950	h1SMcG0022397	JQ425157.1	smed_ncbi_20240424	PMID:25017721 van Wolfswinkel et al., 2014
parenchyma	SMED30005950	h1SMcG0022397	Contig49304	uc_Smed_v2	PMID:27612384 Roberts-Galbraith et al., 2016
parenchyma	SMED30005950	h1SMcG0022397	Contig49304	newmark_ests	PMID:27612384 Roberts-Galbraith et al., 2016
parenchyma	SMED30005950	h1SMcG0022397	Contig49304	uc_Smed_v2	PMID:27612384 Roberts-Galbraith et al., 2016
parenchyma	SMED30005950	h1SMcG0022397	Contig49304	newmark_ests	PMID:27612384 Roberts-Galbraith et al., 2016
neoblast	SMED30005950	h1SMcG0022397	SmWIOct06_024248	GPL14150_gene_models	PMID:22385657 Wagner et al., 2012
neoblast	SMED30005950	h1SMcG0022397	SMED_08795_V2_1	GPL14150	PMID:22385657 Wagner et al., 2012
neoblast	SMED30005950	h1SMcG0022397	SMED_08795_V2_1	GPL14150_gene_models	PMID:22385657 Wagner et al., 2012
neoblast	SMED30005950	h1SMcG0022397	SMED30035424	smed_20140614	PMID:22385657 Wagner et al., 2012
neoblast	SMED30005950	h1SMcG0022397	SMED_17787_V2_1	GPL14150	PMID:22385657 Wagner et al., 2012
neoblast	SMED30005950	h1SMcG0022397	SMED_17787_V2_1	GPL14150_gene_models	PMID:22385657 Wagner et al., 2012
neoblast	SMED30005950	h1SMcG0022397	SMED_08795_V2_2	GPL14150	PMID:22385657 Wagner et al., 2012
neoblast	SMED30005950	h1SMcG0022397	SMED_08795_V2_2	GPL14150_gene_models	PMID:22385657 Wagner et al., 2012
neoblast	SMED30005950	h1SMcG0022397	SmWIOct06_024248	GPL14150_gene_models	PMID:22385657 Wagner et al., 2012
neoblast	SMED30005950	h1SMcG0022397	SMED_08795_V2_1	GPL14150	PMID:22385657 Wagner et al., 2012
neoblast	SMED30005950	h1SMcG0022397	SMED_08795_V2_1	GPL14150_gene_models	PMID:22385657 Wagner et al., 2012
neoblast	SMED30005950	h1SMcG0022397	SMED30035424	smed_20140614	PMID:22385657 Wagner et al., 2012
neoblast	SMED30005950	h1SMcG0022397	SMED_17787_V2_1	GPL14150	PMID:22385657 Wagner et al., 2012
neoblast	SMED30005950	h1SMcG0022397	SMED_17787_V2_1	GPL14150_gene_models	PMID:22385657 Wagner et al., 2012
neoblast	SMED30005950	h1SMcG0022397	SMED_08795_V2_2	GPL14150	PMID:22385657 Wagner et al., 2012
neoblast	SMED30005950	h1SMcG0022397	SMED_08795_V2_2	GPL14150_gene_models	PMID:22385657 Wagner et al., 2012

Note: Hover over icons to view figure legend

Homology

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BLAST of Transcriptional adapter 3 vs. Ensembl Human
Match: TADA3 (transcriptional adaptor 3 [Source:HGNC Symbol;Acc:HGNC:19422])

HSP 1 Score: 66.2402 bits (160), Expect = 6.129e-11
Identity = 38/94 (40.43%), Postives = 57/94 (60.64%), Query Frame = 1

Query: 1351 EDKALLGLSRRQAELKLVSESNLGMLRRLLIAAKRDTKRQEIERRLAVADADVIECYNIIESYRPTHKIPLKKDRDAAYRALKERRKILKELES 1632
            ED+ L  L +RQAELK +S  N      LL  AK +  RQE+ +R+ +AD +V++ +  I + R   + P KK++D A++ LKER  ILK L+ 
Sbjct:  339 EDEVLAELRKRQAELKALSAHNRTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKDQAWKTLKERESILKLLDG 432

HSP 2 Score: 52.7582 bits (125), Expect = 1.293e-6
Identity = 23/58 (39.66%), Postives = 38/58 (65.52%), Query Frame = 1

Query:  565 TDSPTDKKLSPISQNYDIPNKFWELMEPYCAEINEDHLKTLDNFIKSYENDVIYYEVP 738
            TD P D  +  I +N D PN+FW  +EPYCA+I  + ++TL+  +K  E++  +Y++P
Sbjct:  136 TDDPID--VPRIPKN-DAPNRFWASVEPYCADITSEEVRTLEELLKPPEDEAEHYKIP 190

[Close]

Query: 1351 EDKALLGLSRRQAELKLVSESNLGMLRRLLIAAKRDTKRQEIERRLAVADADVIECYNIIESYRPTHKIPLKKDRDAAYRALKERRKILKELES 1632
            ED+ L  L +RQAELK +S  N      LL  AK +  RQE+ +R+ +AD +V++ +  I + R   + P KK++D A++ LKER  ILK L+ 
Sbjct:  339 EDEVLAELRKRQAELKALSAHNRTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKDQAWKTLKERESILKLLDG 432

HSP 2 Score: 52.7582 bits (125), Expect = 1.293e-6
Identity = 23/58 (39.66%), Postives = 38/58 (65.52%), Query Frame = 1

Query:  565 TDSPTDKKLSPISQNYDIPNKFWELMEPYCAEINEDHLKTLDNFIKSYENDVIYYEVP 738
            TD P D  +  I +N D PN+FW  +EPYCA+I  + ++TL+  +K  E++  +Y++P
Sbjct:  136 TDDPID--VPRIPKN-DAPNRFWASVEPYCADITSEEVRTLEELLKPPEDEAEHYKIP 190

[Close]

BLAST of Transcriptional adapter 3 vs. Ensembl Human
Match: TADA3 (transcriptional adaptor 3 [Source:HGNC Symbol;Acc:HGNC:19422])

HSP 1 Score: 52.373 bits (124), Expect = 1.343e-6
Identity = 23/58 (39.66%), Postives = 38/58 (65.52%), Query Frame = 1

Query:  565 TDSPTDKKLSPISQNYDIPNKFWELMEPYCAEINEDHLKTLDNFIKSYENDVIYYEVP 738
            TD P D  +  I +N D PN+FW  +EPYCA+I  + ++TL+  +K  E++  +Y++P
Sbjct:  136 TDDPID--VPRIPKN-DAPNRFWASVEPYCADITSEEVRTLEELLKPPEDEAEHYKIP 190

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BLAST of Transcriptional adapter 3 vs. Ensembl Zebrafish
Match: tada3l (transcriptional adaptor 3 (NGG1 homolog, yeast)-like [Source:NCBI gene;Acc:334785])

HSP 1 Score: 68.9366 bits (167), Expect = 6.240e-12
Identity = 38/94 (40.43%), Postives = 59/94 (62.77%), Query Frame = 1

Query: 1351 EDKALLGLSRRQAELKLVSESNLGMLRRLLIAAKRDTKRQEIERRLAVADADVIECYNIIESYRPTHKIPLKKDRDAAYRALKERRKILKELES 1632
            ED+ L  L +RQAELK ++  N      LL  A+ + ++QE+ +R+ VAD +V+E +  I + R   + P KK++D A++ALKER  ILK L+ 
Sbjct:  336 EDEVLAELQKRQAELKALTAHNRSRKLELLKLAREEMRKQELRQRVRVADNEVMEAFRRIMAARQKKRTPTKKEKDQAWKALKERESILKLLDG 429

HSP 2 Score: 50.8322 bits (120), Expect = 3.083e-6
Identity = 16/42 (38.10%), Postives = 30/42 (71.43%), Query Frame = 1

Query:  613 DIPNKFWELMEPYCAEINEDHLKTLDNFIKSYENDVIYYEVP 738
            D PN+FW  +EPYCA+I  + ++ L+  +K+ +++  YY++P
Sbjct:  150 DAPNRFWASVEPYCADITNEEIRVLEELLKAPDDEAEYYKIP 191

[Close]

BLAST of Transcriptional adapter 3 vs. Ensembl Zebrafish
Match: tada3l (transcriptional adaptor 3 (NGG1 homolog, yeast)-like [Source:NCBI gene;Acc:334785])

HSP 1 Score: 68.9366 bits (167), Expect = 6.296e-12
Identity = 38/94 (40.43%), Postives = 59/94 (62.77%), Query Frame = 1

Query: 1351 EDKALLGLSRRQAELKLVSESNLGMLRRLLIAAKRDTKRQEIERRLAVADADVIECYNIIESYRPTHKIPLKKDRDAAYRALKERRKILKELES 1632
            ED+ L  L +RQAELK ++  N      LL  A+ + ++QE+ +R+ VAD +V+E +  I + R   + P KK++D A++ALKER  ILK L+ 
Sbjct:  336 EDEVLAELQKRQAELKALTAHNRSRKLELLKLAREEMRKQELRQRVRVADNEVMEAFRRIMAARQKKRTPTKKEKDQAWKALKERESILKLLDG 429

[Close]

BLAST of Transcriptional adapter 3 vs. Ensembl Zebrafish
Match: tada3l (transcriptional adaptor 3 (NGG1 homolog, yeast)-like [Source:NCBI gene;Acc:334785])

HSP 1 Score: 68.9366 bits (167), Expect = 6.296e-12
Identity = 38/94 (40.43%), Postives = 59/94 (62.77%), Query Frame = 1

Query: 1351 EDKALLGLSRRQAELKLVSESNLGMLRRLLIAAKRDTKRQEIERRLAVADADVIECYNIIESYRPTHKIPLKKDRDAAYRALKERRKILKELES 1632
            ED+ L  L +RQAELK ++  N      LL  A+ + ++QE+ +R+ VAD +V+E +  I + R   + P KK++D A++ALKER  ILK L+ 
Sbjct:  336 EDEVLAELQKRQAELKALTAHNRSRKLELLKLAREEMRKQELRQRVRVADNEVMEAFRRIMAARQKKRTPTKKEKDQAWKALKERESILKLLDG 429

[Close]

BLAST of Transcriptional adapter 3 vs. Ensembl Zebrafish
Match: tada3l (transcriptional adaptor 3 (NGG1 homolog, yeast)-like [Source:NCBI gene;Acc:334785])

HSP 1 Score: 68.9366 bits (167), Expect = 6.296e-12
Identity = 38/94 (40.43%), Postives = 59/94 (62.77%), Query Frame = 1

Query: 1351 EDKALLGLSRRQAELKLVSESNLGMLRRLLIAAKRDTKRQEIERRLAVADADVIECYNIIESYRPTHKIPLKKDRDAAYRALKERRKILKELES 1632
            ED+ L  L +RQAELK ++  N      LL  A+ + ++QE+ +R+ VAD +V+E +  I + R   + P KK++D A++ALKER  ILK L+ 
Sbjct:  336 EDEVLAELQKRQAELKALTAHNRSRKLELLKLAREEMRKQELRQRVRVADNEVMEAFRRIMAARQKKRTPTKKEKDQAWKALKERESILKLLDG 429

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BLAST of Transcriptional adapter 3 vs. Ensembl Xenopus
Match: tada3 (transcriptional adaptor 3 [Source:NCBI gene;Acc:493402])

HSP 1 Score: 70.4774 bits (171), Expect = 2.894e-12
Identity = 39/94 (41.49%), Postives = 59/94 (62.77%), Query Frame = 1

Query: 1351 EDKALLGLSRRQAELKLVSESNLGMLRRLLIAAKRDTKRQEIERRLAVADADVIECYNIIESYRPTHKIPLKKDRDAAYRALKERRKILKELES 1632
            ED+ L  L +RQAELK +S  N    + LL  AK +  RQE+ +R+ +AD +V++ +  I + R   + P KK++D A++ALKER  ILK L+ 
Sbjct:  339 EDEVLAELRKRQAELKALSAHNRAKKQELLRLAKEEMNRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKDQAWKALKERESILKLLDG 432

HSP 2 Score: 57.7658 bits (138), Expect = 3.214e-8
Identity = 25/58 (43.10%), Postives = 39/58 (67.24%), Query Frame = 1

Query:  565 TDSPTDKKLSPISQNYDIPNKFWELMEPYCAEINEDHLKTLDNFIKSYENDVIYYEVP 738
            TD P D  +  I +N D PN+FW  +EPYCA+I  D +K L++ +K+ E++  YY++P
Sbjct:  136 TDDPVD--VPRIPKN-DAPNRFWASVEPYCADITNDEIKVLEDLLKTPEDEADYYKIP 190

[Close]

BLAST of Transcriptional adapter 3 vs. Ensembl Xenopus
Match: tada3 (transcriptional adaptor 3 [Source:NCBI gene;Acc:493402])

HSP 1 Score: 69.3218 bits (168), Expect = 5.796e-12
Identity = 39/94 (41.49%), Postives = 59/94 (62.77%), Query Frame = 1

Query: 1351 EDKALLGLSRRQAELKLVSESNLGMLRRLLIAAKRDTKRQEIERRLAVADADVIECYNIIESYRPTHKIPLKKDRDAAYRALKERRKILKELES 1632
            ED+ L  L +RQAELK +S  N    + LL  AK +  RQE+ +R+ +AD +V++ +  I + R   + P KK++D A++ALKER  ILK L+ 
Sbjct:  333 EDEVLAELRKRQAELKALSAHNRAKKQELLRLAKEEMNRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKDQAWKALKERESILKLLDG 426

[Close]

BLAST of Transcriptional adapter 3 vs. Ensembl Mouse
Match: Tada3 (transcriptional adaptor 3 [Source:MGI Symbol;Acc:MGI:1915724])

HSP 1 Score: 65.0846 bits (157), Expect = 2.224e-11
Identity = 38/94 (40.43%), Postives = 57/94 (60.64%), Query Frame = 1

Query: 1351 EDKALLGLSRRQAELKLVSESNLGMLRRLLIAAKRDTKRQEIERRLAVADADVIECYNIIESYRPTHKIPLKKDRDAAYRALKERRKILKELES 1632
            ED+ L  L +RQAELK +S  N      LL  AK +  RQE+ +R+ +AD +V++ +  I + R   + P KK++D A++ LKER  ILK L+ 
Sbjct:  139 EDEVLAELRKRQAELKALSAHNRTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKDQAWKTLKERESILKLLDG 232

[Close]

BLAST of Transcriptional adapter 3 vs. Ensembl Mouse
Match: Tada3 (transcriptional adaptor 3 [Source:MGI Symbol;Acc:MGI:1915724])

HSP 1 Score: 66.2402 bits (160), Expect = 4.134e-11
Identity = 38/94 (40.43%), Postives = 57/94 (60.64%), Query Frame = 1

Query: 1351 EDKALLGLSRRQAELKLVSESNLGMLRRLLIAAKRDTKRQEIERRLAVADADVIECYNIIESYRPTHKIPLKKDRDAAYRALKERRKILKELES 1632
            ED+ L  L +RQAELK +S  N      LL  AK +  RQE+ +R+ +AD +V++ +  I + R   + P KK++D A++ LKER  ILK L+ 
Sbjct:  339 EDEVLAELRKRQAELKALSAHNRTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKDQAWKTLKERESILKLLDG 432

HSP 2 Score: 52.7582 bits (125), Expect = 8.953e-7
Identity = 23/58 (39.66%), Postives = 38/58 (65.52%), Query Frame = 1

Query:  565 TDSPTDKKLSPISQNYDIPNKFWELMEPYCAEINEDHLKTLDNFIKSYENDVIYYEVP 738
            TD P D  +  I +N D PN+FW  +EPYCA+I  + ++TL+  +K  E++  +Y++P
Sbjct:  136 TDDPID--VPRIPKN-DAPNRFWASVEPYCADITSEEVRTLEELLKPPEDEAEHYKIP 190

[Close]

BLAST of Transcriptional adapter 3 vs. Ensembl Mouse
Match: Tada3 (transcriptional adaptor 3 [Source:MGI Symbol;Acc:MGI:1915724])

HSP 1 Score: 65.855 bits (159), Expect = 5.170e-11
Identity = 38/94 (40.43%), Postives = 57/94 (60.64%), Query Frame = 1

Query: 1351 EDKALLGLSRRQAELKLVSESNLGMLRRLLIAAKRDTKRQEIERRLAVADADVIECYNIIESYRPTHKIPLKKDRDAAYRALKERRKILKELES 1632
            ED+ L  L +RQAELK +S  N      LL  AK +  RQE+ +R+ +AD +V++ +  I + R   + P KK++D A++ LKER  ILK L+ 
Sbjct:  320 EDEVLAELRKRQAELKALSAHNRTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKDQAWKTLKERESILKLLDG 413

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BLAST of Transcriptional adapter 3 vs. UniProt/SwissProt
Match: sp|Q66JG5|TADA3_XENTR (Transcriptional adapter 3 OS=Xenopus tropicalis OX=8364 GN=tada3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.533e-11
Identity = 39/94 (41.49%), Postives = 59/94 (62.77%), Query Frame = 1

Query: 1351 EDKALLGLSRRQAELKLVSESNLGMLRRLLIAAKRDTKRQEIERRLAVADADVIECYNIIESYRPTHKIPLKKDRDAAYRALKERRKILKELES 1632
            ED+ L  L +RQAELK +S  N    + LL  AK +  RQE+ +R+ +AD +V++ +  I + R   + P KK++D A++ALKER  ILK L+ 
Sbjct:  339 EDEVLAELRKRQAELKALSAHNRAKKQELLRLAKEEMNRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKDQAWKALKERESILKLLDG 432

HSP 2 Score: 57.7658 bits (138), Expect = 1.702e-7
Identity = 25/58 (43.10%), Postives = 39/58 (67.24%), Query Frame = 1

Query:  565 TDSPTDKKLSPISQNYDIPNKFWELMEPYCAEINEDHLKTLDNFIKSYENDVIYYEVP 738
            TD P D  +  I +N D PN+FW  +EPYCA+I  D +K L++ +K+ E++  YY++P
Sbjct:  136 TDDPVD--VPRIPKN-DAPNRFWASVEPYCADITNDEIKVLEDLLKTPEDEADYYKIP 190

[Close]

BLAST of Transcriptional adapter 3 vs. UniProt/SwissProt
Match: sp|Q66IZ5|TAD3B_XENLA (Transcriptional adapter 3-B OS=Xenopus laevis OX=8355 GN=tada3-b PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.705e-11
Identity = 39/94 (41.49%), Postives = 59/94 (62.77%), Query Frame = 1

Query: 1351 EDKALLGLSRRQAELKLVSESNLGMLRRLLIAAKRDTKRQEIERRLAVADADVIECYNIIESYRPTHKIPLKKDRDAAYRALKERRKILKELES 1632
            ED+ L  L +RQAELK +S  N    + LL  AK +  RQE+ +R+ +AD +V++ +  I + R   + P KK++D A++ALKER  ILK L+ 
Sbjct:  339 EDEVLAELRKRQAELKALSAHNRAKKQELLRLAKEEMNRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKDQAWKALKERESILKLLDG 432

HSP 2 Score: 57.3806 bits (137), Expect = 1.842e-7
Identity = 25/58 (43.10%), Postives = 39/58 (67.24%), Query Frame = 1

Query:  565 TDSPTDKKLSPISQNYDIPNKFWELMEPYCAEINEDHLKTLDNFIKSYENDVIYYEVP 738
            TD P D  +  I +N D PN+FW  +EPYCA+I  D +K L++ +K+ E++  YY++P
Sbjct:  136 TDDPVD--VPRIPKN-DAPNRFWASVEPYCADITNDEIKVLEDLLKTPEDEADYYKIP 190

[Close]

BLAST of Transcriptional adapter 3 vs. UniProt/SwissProt
Match: sp|Q6PGT0|TAD3A_XENLA (Transcriptional adapter 3-A OS=Xenopus laevis OX=8355 GN=tada3-a PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.705e-11
Identity = 39/94 (41.49%), Postives = 59/94 (62.77%), Query Frame = 1

Query: 1351 EDKALLGLSRRQAELKLVSESNLGMLRRLLIAAKRDTKRQEIERRLAVADADVIECYNIIESYRPTHKIPLKKDRDAAYRALKERRKILKELES 1632
            ED+ L  L +RQAELK +S  N    + LL  AK +  RQE+ +R+ +AD +V++ +  I + R   + P KK++D A++ALKER  ILK L+ 
Sbjct:  339 EDEVLAELRKRQAELKALSAHNRAKKQELLRLAKEEMNRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKDQAWKALKERESILKLLDG 432

HSP 2 Score: 57.3806 bits (137), Expect = 1.858e-7
Identity = 25/58 (43.10%), Postives = 39/58 (67.24%), Query Frame = 1

Query:  565 TDSPTDKKLSPISQNYDIPNKFWELMEPYCAEINEDHLKTLDNFIKSYENDVIYYEVP 738
            TD P D  +  I +N D PN+FW  +EPYCA+I  D +K L++ +K+ E++  YY++P
Sbjct:  136 TDDPVD--VPRIPKN-DAPNRFWASVEPYCADITNDEIKVLEDLLKTPEDEADYYKIP 190

[Close]

BLAST of Transcriptional adapter 3 vs. UniProt/SwissProt
Match: sp|Q7SY21|TADA3_DANRE (Transcriptional adapter 3 OS=Danio rerio OX=7955 GN=tada3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.332e-11
Identity = 38/94 (40.43%), Postives = 59/94 (62.77%), Query Frame = 1

Query: 1351 EDKALLGLSRRQAELKLVSESNLGMLRRLLIAAKRDTKRQEIERRLAVADADVIECYNIIESYRPTHKIPLKKDRDAAYRALKERRKILKELES 1632
            ED+ L  L +RQAELK ++  N      LL  A+ + ++QE+ +R+ VAD +V+E +  I + R   + P KK++D A++ALKER  ILK L+ 
Sbjct:  336 EDEVLAELQKRQAELKALTAHNRSRKLELLKLAREEMRKQELRQRVRVADNEVMEAFRRIMAARQKKRTPTKKEKDQAWKALKERESILKLLDG 429

[Close]

BLAST of Transcriptional adapter 3 vs. UniProt/SwissProt
Match: sp|Q5R5V0|TADA3_PONAB (Transcriptional adapter 3 OS=Pongo abelii OX=9601 GN=TADA3 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.671e-10
Identity = 38/94 (40.43%), Postives = 57/94 (60.64%), Query Frame = 1

Query: 1351 EDKALLGLSRRQAELKLVSESNLGMLRRLLIAAKRDTKRQEIERRLAVADADVIECYNIIESYRPTHKIPLKKDRDAAYRALKERRKILKELES 1632
            ED+ L  L +RQAELK +S  N      LL  AK +  RQE+ +R+ +AD +V++ +  I + R   + P KK++D A++ LKER  ILK L+ 
Sbjct:  339 EDEVLAELRKRQAELKALSAHNRTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKDQAWKTLKERESILKLLDG 432

HSP 2 Score: 52.7582 bits (125), Expect = 5.995e-6
Identity = 23/58 (39.66%), Postives = 38/58 (65.52%), Query Frame = 1

Query:  565 TDSPTDKKLSPISQNYDIPNKFWELMEPYCAEINEDHLKTLDNFIKSYENDVIYYEVP 738
            TD P D  +  I +N D PN+FW  +EPYCA+I  + ++TL+  +K  E++  +Y++P
Sbjct:  136 TDDPID--VPRIPKN-DAPNRFWASVEPYCADITSEEVRTLEELLKPPEDEAEHYKIP 190

[Close]

BLAST of Transcriptional adapter 3 vs. TrEMBL
Match: A0A075AD91 (Uncharacterized protein OS=Opisthorchis viverrini OX=6198 GN=T265_06725 PE=4 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.126e-29
Identity = 64/96 (66.67%), Postives = 79/96 (82.29%), Query Frame = 1

Query: 1354 DKALLGLSRRQAELKLVSESNLGMLRRLLIAAKRDTKRQEIERRLAVADADVIECYNIIESYRPTHKIPLKKDRDAAYRALKERRKILKELESLDT 1641
            D+  L + +RQ EL+LV   N G+LRRL+ AA+RD +RQEI+RRLA+ADADVIE YN +ESYRP  K PLK+DRD+AY+ALKERRKILKELE+ DT
Sbjct:  776 DEVALAIQQRQQELRLVCAENHGVLRRLVQAARRDMQRQEIQRRLAIADADVIEAYNKLESYRPHRKPPLKRDRDSAYKALKERRKILKELEAFDT 871

HSP 2 Score: 73.559 bits (179), Expect = 7.904e-10
Identity = 60/195 (30.77%), Postives = 96/195 (49.23%), Query Frame = 1

Query:  160 VKLHDVSNLQVETEKIMCLLGYRMMNLSSLIDGKPM---VLNGLTQENCRNSIFLTPNLLPENQNGLSNRNTQPDKLTTKSNDIILKSSPEKPLAFIISQ-NRPSTRRTTSGVKRKISKEEF------VTPNKRKKPSNFPTDSQTDSPTDKKLSPISQNYDIPNKFWELMEPYCAEINEDHLKTLDNFIKSYEN 714
            + + D+++ Q E E+++  +  R+  LS+   GK +   ++N L Q   R    LT      NQ+              +   +++  +P+KPL  IISQ  RP  +     ++   S+++F      V    R     +     + SP DK  S  S +Y IPNKFWELMEPYCAEI E ++  L+N I+SY++
Sbjct:    1 MHMFDLASAQSELERMLSTVLERLECLSAESKGKDLPENIVNLLKQ---RGDTALTDI----NQSAFG-----------RPTSLVVTPNPDKPLTLIISQQTRPIHQTCLPALEPSSSRKKFPPGSPSVCRVSRSSTDVYAAQVSSTSP-DKNQS--SSSYAIPNKFWELMEPYCAEITEANISYLENLIRSYQD 174

[Close]

BLAST of Transcriptional adapter 3 vs. TrEMBL
Match: R7TJI0 (Uncharacterized protein OS=Capitella teleta OX=283909 GN=CAPTEDRAFT_174003 PE=4 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.153e-29
Identity = 110/383 (28.72%), Postives = 173/383 (45.17%), Query Frame = 1

Query:  559 SQTDSPTDKKLSPISQNYDIPNKFWELMEPYCAEINEDHLKTLDNFIKSYENDVIYYEVPEAPAQ------NEGACENQSYGLNLRRNSIHEEVNHLNGFVDGKNGIDLSNLLKKID-IEISVTKKKPLSQPKALKDFPKKFVESMSNHTENFIK-THQNKVNESKNNGFV------------------KTSQSSKSIAKQLKVSNSFKLERHIKKTAEDLGICNFNLPFIPKIQLEHDLQHNEPDQMGITKSSEADIIDPMILNSDDYIELNLPQPSSPRKRKFDFKIKEDKALLGLSRRQAELKLVSESNLGMLRRLLIAAKRDTKRQEIERRLAVADADVIECYNIIESYRPTHKIPLKKDRDAAYRALKERRKILKELE 1629
            S+T +P  K+L  +S+N D PN+FW ++EPYC EI  D LK L+  +K++E+D  YY+VP           NE   E Q  G  L                 G    D S LLK +D  E   +   PL+Q         + V+++    EN +     + ++E+   GFV                    + SS+S+AKQL + N+  LE+ IKK  E+ GI                                        L+SDD+   + P                D+ L  L ++Q EL+++S+ NL + +RL   AK + +RQE+ +++A ADADV++ Y  +++ +   + P KK+++ A RALKER  ++K LE
Sbjct:  135 SKTAAPKTKELPKLSKN-DTPNRFWAMIEPYCQEITTDDLKVLEEIMKTHEDDADYYKVPSLGKHYSHKWANEDLSEEQKEGFKLSDG------------CSGGGATDASTLLKHLDDSEDDSSPFGPLTQ---------RLVQALME--ENIMTPIDDSTISEA---GFVLSLRLFIFAFCFIVDAVEAATISSRSLAKQLNLGNTATLEKRIKKELEEHGI----------------------------------------LDSDDFNSEDDPN---------------DEVLAELRKKQQELRVLSQHNLMVTKRLYKMAKEEMQRQELRKKMATADADVMDAYRRLQAIKQKKRTPTKKEKEMAIRALKEREALVKALE 435

[Close]

BLAST of Transcriptional adapter 3 vs. TrEMBL
Match: A0A4S2L7V0 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_009388 PE=4 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.033e-29
Identity = 63/96 (65.62%), Postives = 78/96 (81.25%), Query Frame = 1

Query: 1354 DKALLGLSRRQAELKLVSESNLGMLRRLLIAAKRDTKRQEIERRLAVADADVIECYNIIESYRPTHKIPLKKDRDAAYRALKERRKILKELESLDT 1641
            D+  L + +RQ EL+LV   N G+L RL+ AA+RD +RQEI+RRLA+ADADVIE YN +ESYRP  K PLK+DRD+AY+ALKERRKILKELE+ DT
Sbjct:  816 DEVALAIQQRQQELRLVCAENHGVLHRLVQAARRDMQRQEIQRRLAIADADVIEAYNKLESYRPHRKPPLKRDRDSAYKALKERRKILKELEAFDT 911

HSP 2 Score: 97.0561 bits (240), Expect = 3.285e-17
Identity = 69/220 (31.36%), Postives = 113/220 (51.36%), Query Frame = 1

Query:   85 SYVHHETIDLSSKYPVFNKVLNTNDVKLHDVSNLQVETEKIMCLLGYRMMNLSSLIDGKPM---VLNGLTQENCRNSIFLTPNLLPENQNGLSNRNTQPDKLTTKSNDIILKSSPEKPLAFIISQ-NRPSTRRTTSGVKRKISKEEF------VTPNKRKKPSNFPTDSQTDSPTDKKLSPISQNYDIPNKFWELMEPYCAEINEDHLKTLDNFIKSYEN 714
            SY +HE   + S YP  +K+L++N++ + D+++ Q E E+++  +  R+  LS+   GK +   ++N L Q   R    +T      NQ+              +   +++  +P+KPL  IISQ  RP  +     +    S+++F      V    R     +   + + SP DK  S  S +Y IPNKFWELMEPYCAEI E ++  L+N I+SY++
Sbjct:   16 SYPYHEAQSMESLYPTLHKILHSNEMHMFDLASAQSELERMLSTVLERLECLSAESKGKDLPENIVNLLKQ---RGDTAVTDI----NQSAFG-----------RPTSLVVTPNPDKPLTLIISQQTRPVHQTCLPALDPSSSRKKFPPGSPSVCRVSRSSTDVYAAQASSTSP-DKNQS--SSSYAIPNKFWELMEPYCAEITEANISYLENLIRSYQD 214

[Close]

BLAST of Transcriptional adapter 3 vs. TrEMBL
Match: A0A419PLY7 (Transcriptional adapter 3 OS=Clonorchis sinensis OX=79923 GN=tada3 PE=4 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.407e-28
Identity = 62/96 (64.58%), Postives = 78/96 (81.25%), Query Frame = 1

Query: 1354 DKALLGLSRRQAELKLVSESNLGMLRRLLIAAKRDTKRQEIERRLAVADADVIECYNIIESYRPTHKIPLKKDRDAAYRALKERRKILKELESLDT 1641
            D+  L + +RQ EL+LV   N  +LRRL+ AA+RD +RQEI+RRLA+ADADVIE YN +ESYRP  K PLK+DRD+AY+ALKERRKIL+ELE+ DT
Sbjct:  776 DEVALAIQQRQQELRLVCVENHAVLRRLVQAARRDMQRQEIQRRLAIADADVIEAYNKLESYRPHRKPPLKRDRDSAYKALKERRKILQELEAFDT 871

HSP 2 Score: 74.3294 bits (181), Expect = 4.662e-10
Identity = 60/195 (30.77%), Postives = 96/195 (49.23%), Query Frame = 1

Query:  160 VKLHDVSNLQVETEKIMCLLGYRMMNLSSLIDGKPM---VLNGLTQENCRNSIFLTPNLLPENQNGLSNRNTQPDKLTTKSNDIILKSSPEKPLAFIISQ-NRPSTRRTTSGVKRKISKEEF------VTPNKRKKPSNFPTDSQTDSPTDKKLSPISQNYDIPNKFWELMEPYCAEINEDHLKTLDNFIKSYEN 714
            + + D+++ Q E E+++  +  R+  LS+   GK +   ++N L Q   R    LT      NQ+              +   +++  +P+KPL  IISQ  RP  +     ++   S+++F      V    R     +     + SP DK  S  S +Y IPNKFWELMEPYCAEI E ++  L+N I+SY++
Sbjct:    1 MHMFDLASAQSELERMLSTVLERLECLSAESKGKDLPENIVNLLKQ---RGDTALTDI----NQSAFG-----------RPTSLVVTPNPDKPLTLIISQQTRPVHQTCLPALEPSSSRKKFPPGSPSVCRVSRSSTDVYAAQVSSTSP-DKNQS--SSSYAIPNKFWELMEPYCAEITEANISYLENLIRSYQD 174

[Close]

BLAST of Transcriptional adapter 3 vs. TrEMBL
Match: A0A3S5CNH3 (Uncharacterized protein OS=Protopolystoma xenopodis OX=117903 GN=PXEA_LOCUS28796 PE=4 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.263e-28
Identity = 59/100 (59.00%), Postives = 76/100 (76.00%), Query Frame = 1

Query: 1345 IKEDKALLGLSRRQAELKLVSESNLGMLRRLLIAAKRDTKRQEIERRLAVADADVIECYNIIESYRPTHKIPLKKDRDAAYRALKERRKILKELESLDTE 1644
            ++ D+    + +RQ EL+ V  +N   LRRL+ AAKRD +RQEI+RRLAVADADVIE YN +E+YR   K PLK+DRDAA++ LKER+KILKELE  DT+
Sbjct:   34 LRADEIAWAIIQRQRELRSVCATNHSTLRRLVQAAKRDMQRQEIQRRLAVADADVIEAYNKLENYRAQRKTPLKRDRDAAWKTLKERKKILKELEVFDTK 133

[Close]

BLAST of Transcriptional adapter 3 vs. Ensembl Cavefish
Match: tada3l (transcriptional adaptor 3 [Source:NCBI gene;Acc:103021557])

HSP 1 Score: 70.4774 bits (171), Expect = 1.686e-12
Identity = 38/94 (40.43%), Postives = 60/94 (63.83%), Query Frame = 1

Query: 1351 EDKALLGLSRRQAELKLVSESNLGMLRRLLIAAKRDTKRQEIERRLAVADADVIECYNIIESYRPTHKIPLKKDRDAAYRALKERRKILKELES 1632
            ED+ L  L +RQAELK ++  N    + LL  A+ + ++QE+ +R+ VAD +V+E +  I + R   + P KK++D A++ALKER  ILK L+ 
Sbjct:  336 EDEVLAELQKRQAELKALTAHNRARKQELLRLAREEMRKQELRQRVRVADNEVMEAFRRIMAARQKKRTPTKKEKDQAWKALKERESILKLLDG 429

HSP 2 Score: 50.0618 bits (118), Expect = 5.205e-6
Identity = 16/42 (38.10%), Postives = 29/42 (69.05%), Query Frame = 1

Query:  613 DIPNKFWELMEPYCAEINEDHLKTLDNFIKSYENDVIYYEVP 738
            D PN+FW  +EPYCA+I  + ++ L+  +K  +++  YY++P
Sbjct:  150 DAPNRFWASVEPYCADITNEEIRVLEELLKPPDDEAEYYKIP 191

[Close]

BLAST of Transcriptional adapter 3 vs. Ensembl Cavefish
Match: tada3l (transcriptional adaptor 3 [Source:NCBI gene;Acc:103021557])

HSP 1 Score: 51.9878 bits (123), Expect = 9.823e-7
Identity = 25/62 (40.32%), Postives = 42/62 (67.74%), Query Frame = 1

Query: 1447 AKRDTKRQEIERRLAVADADVIECYNIIESYRPTHKIPLKKDRDAAYRALKERRKILKELES 1632
            A+ + ++QE+ +R+ VAD +V+E +  I + R   + P KK++D A++ALKER  ILK L+ 
Sbjct:  304 AREEMRKQELRQRVRVADNEVMEAFRRIMAARQKKRTPTKKEKDQAWKALKERESILKLLDG 365

HSP 2 Score: 49.2914 bits (116), Expect = 6.879e-6
Identity = 16/42 (38.10%), Postives = 29/42 (69.05%), Query Frame = 1

Query:  613 DIPNKFWELMEPYCAEINEDHLKTLDNFIKSYENDVIYYEVP 738
            D PN+FW  +EPYCA+I  + ++ L+  +K  +++  YY++P
Sbjct:  150 DAPNRFWASVEPYCADITNEEIRVLEELLKPPDDEAEYYKIP 191

[Close]

BLAST of Transcriptional adapter 3 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000003590.1 (pep scaffold:Pmarinus_7.0:GL490423:1883:5158:-1 gene:ENSPMAG00000003276.1 transcript:ENSPMAT00000003590.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 59.3066 bits (142), Expect = 1.070e-10
Identity = 37/98 (37.76%), Postives = 58/98 (59.18%), Query Frame = 1

Query: 1351 EDKALLGLSRRQAELKLVSESNLGM----LRRLLIAAKRDTKRQEIERRLAVADADVIECYNIIESYRPTHKIPLKKDRDAAYRALKERRKILKELES 1632
            ED+ L  L +RQAEL+ V+  N       ++R+   A+ + +RQE+  R  VAD +V+E Y  I   R   + P KK+++ A++ LKER  ILK L++
Sbjct:   65 EDEVLAELRKRQAELRAVTAHNRARKQAHIQRM---AREEMRRQELRARARVADTEVMEAYRRIMGARQKKRTPTKKEKEHAWKVLKERESILKLLDA 159

[Close]

BLAST of Transcriptional adapter 3 vs. Ensembl Nematostella
Match: EDO41447 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S4C1])

HSP 1 Score: 60.4622 bits (145), Expect = 8.054e-10
Identity = 35/94 (37.23%), Postives = 58/94 (61.70%), Query Frame = 1

Query: 1351 EDKALLGLSRRQAELKLVSESNLGMLRRLLIAAKRDTKRQEIERRLAVADADVIECYNIIESYRPTHKIPLKKDRDAAYRALKERRKILKELES 1632
            +D+ L  L R Q+ELK +   N    + LL  A+ + +RQE+  R  +A+A+V+E +  I + +   K P KK++D A++AL+ER  I++ LES
Sbjct:  348 DDEVLAELKRHQSELKTLIAKNKQAKQDLLKLAQEEMRRQELRHRSKIANAEVMENFRKIIACKQKRKSPTKKEKDIAWKALREREAIIRVLES 441

HSP 2 Score: 50.447 bits (119), Expect = 1.183e-6
Identity = 27/76 (35.53%), Postives = 46/76 (60.53%), Query Frame = 1

Query:  613 DIPNKFWELMEPYCAEINEDHLKTLDNFIKSYENDVIYYEVP-------EAPAQNEGACENQSYGLNL---RRNSI 810
            D PN+FW ++EPYCA++ +D LK L++ +K+ +++  Y ++P       E  AQ E   + Q  G+ L   RR+S+
Sbjct:  161 DAPNRFWSVVEPYCADLTQDDLKFLEDSLKADDDEHEYCKIPSLGKHYSEKWAQ-EDLMDEQQEGIKLQEKRRSSL 235

[Close]

BLAST of Transcriptional adapter 3 vs. Ensembl Medaka
Match: tada3l (transcriptional adaptor 3 [Source:NCBI gene;Acc:101160157])

HSP 1 Score: 72.7886 bits (177), Expect = 2.738e-13
Identity = 41/94 (43.62%), Postives = 61/94 (64.89%), Query Frame = 1

Query: 1351 EDKALLGLSRRQAELKLVSESNLGMLRRLLIAAKRDTKRQEIERRLAVADADVIECYNIIESYRPTHKIPLKKDRDAAYRALKERRKILKELES 1632
            ED+ L  L +RQAELK +S  N    + LL  AK + ++QE+ +R+ VAD +V+E +  I + R   + P KK++D A++ALKER  ILK L+S
Sbjct:  338 EDEILAELQKRQAELKALSAHNRARKQELLRLAKEEMRKQELRQRVRVADNEVMEGFRRIMAARQKKRTPTKKEKDQAWKALKERESILKLLDS 431

[Close]

Query: 1351 EDKALLGLSRRQAELKLVSESNLGMLRRLLIAAKRDTKRQEIERRLAVADADVIECYNIIESYRPTHKIPLKKDRDAAYRALKERRKILKELES 1632
            ED+ L  L +RQAELK +S  N    + LL  AK + ++QE+ +R+ VAD +V+E +  I + R   + P KK++D A++ALKER  ILK L+S
Sbjct:  338 EDEILAELQKRQAELKALSAHNRARKQELLRLAKEEMRKQELRQRVRVADNEVMEGFRRIMAARQKKRTPTKKEKDQAWKALKERESILKLLDS 431

[Close]

BLAST of Transcriptional adapter 3 vs. Ensembl Medaka
Match: tada3l (transcriptional adaptor 3 [Source:NCBI gene;Acc:101160157])

HSP 1 Score: 54.299 bits (129), Expect = 1.853e-7
Identity = 27/62 (43.55%), Postives = 43/62 (69.35%), Query Frame = 1

Query: 1447 AKRDTKRQEIERRLAVADADVIECYNIIESYRPTHKIPLKKDRDAAYRALKERRKILKELES 1632
            AK + ++QE+ +R+ VAD +V+E +  I + R   + P KK++D A++ALKER  ILK L+S
Sbjct:  306 AKEEMRKQELRQRVRVADNEVMEGFRRIMAARQKKRTPTKKEKDQAWKALKERESILKLLDS 367

[Close]

BLAST of Transcriptional adapter 3 vs. Planmine SMEST
Match: SMESG000023288.1 (SMESG000023288.1)

HSP 1 Score: 1088.56 bits (2814), Expect = 0.000e+0
Identity = 535/540 (99.07%), Postives = 536/540 (99.26%), Query Frame = 1

Query:   31 MRPSLNLRFGSGKGILSSSYVHHETIDLSSKYPVFNKVLNTNDVKLHDVSNLQVETEKIMCLLGYRMMNLSSLIDGKPMVLNGLTQENCRNSIFLTPNLLPENQNGLSNRNTQPDKLTTKSNDIILKSSPEKPLAFIISQNRPSTRRTTSGVKRKISKEEFVTPNKRKKPSNFPTDSQTDSPTDKKLSPISQNYDIPNKFWELMEPYCAEINEDHLKTLDNFIKSYENDVIYYEVPEAPAQNEGACENQSYGLNLRRNSIHEEVNHLNGFVDGKNGIDLSNLLKKIDIEISVTKKKPLSQPKALKDFPKKFVESMSNHTENFIKTHQNKVNESKNNGFVKTSQSSKSIAKQLKVSNSFKLERHIKKTAEDLGICNFNLPFIPKIQLEHDLQHNEPDQMGITKSSEADIIDPMILNSDDYIELNLPQPSSPRKRKFDFKIKEDKALLGLSRRQAELKLVSESNLGMLRRLLIAAKRDTKRQEIERRLAVADADVIECYNIIESYRPTHKIPLKKDRDAAYRALKERRKILKELESLDTEFL 1650
            MRPSLNLRFGSGKGILSSSYVHHETIDLSSKYPVFNKVLNTNDVKLHDVSNLQVETEKIMCLLGYRMMNLSSLIDGKPMVLNGLTQENCRNSIFLTPNLLPENQNGLSNRNTQPDKLTTKSNDIILKSSPEKPLAFIISQNRPSTRRTTSGVKRKISKEEFVTPNKRKKPSNFPTDSQTDSPTDKKLSPISQNYDIPNKFWELMEPYCAEINEDHLKTLDNFIKSYENDVIYYEVPEAPAQNEGACENQSYGLNLRRNSIHEEVNHLNGFVDGKNGIDLSNLLKKIDIEI    +KPLSQPKALKDFPKKFVESMSNHTENFIKTHQNKVNESKNNGFVKTSQSSKSIAKQLKVSNSFKLERHIKKTAEDLGICNFNLPFIPKIQLEHDLQHNEPDQMGITKSSEADIIDPMILNSDDYIELNLPQPSSPRKRKFDFKIKEDKALLGLSRRQAELKLVSESNLGMLRRLLIAAKRDTKRQEIERRLAVADADVIECYNIIESYRPTHKIPLKKDRDAAYRALKERRKILKELESLDTEFL
Sbjct:    1 MRPSLNLRFGSGKGILSSSYVHHETIDLSSKYPVFNKVLNTNDVKLHDVSNLQVETEKIMCLLGYRMMNLSSLIDGKPMVLNGLTQENCRNSIFLTPNLLPENQNGLSNRNTQPDKLTTKSNDIILKSSPEKPLAFIISQNRPSTRRTTSGVKRKISKEEFVTPNKRKKPSNFPTDSQTDSPTDKKLSPISQNYDIPNKFWELMEPYCAEINEDHLKTLDNFIKSYENDVIYYEVPEAPAQNEGACENQSYGLNLRRNSIHEEVNHLNGFVDGKNGIDLSNLLKKIDIEI----RKPLSQPKALKDFPKKFVESMSNHTENFIKTHQNKVNESKNNGFVKTSQSSKSIAKQLKVSNSFKLERHIKKTAEDLGICNFNLPFIPKIQLEHDLQHNEPDQMGITKSSEADIIDPMILNSDDYIELNLPQPSSPRKRKFDFKIKEDKALLGLSRRQAELKLVSESNLGMLRRLLIAAKRDTKRQEIERRLAVADADVIECYNIIESYRPTHKIPLKKDRDAAYRALKERRKILKELESLDTEFL 536

[Close]

BLAST of Transcriptional adapter 3 vs. Planmine SMEST
Match: SMESG000023288.1 (SMESG000023288.1)

HSP 1 Score: 1084.32 bits (2803), Expect = 0.000e+0
Identity = 535/541 (98.89%), Postives = 536/541 (99.08%), Query Frame = 1

Query:   31 MRPSLNLRFGSGKGILSSSYVHHETIDLSSKYPVFNKVLNTNDVKLHDVSNLQVETEKIMCLLGYRMMNLSSLIDGKPMVLNGLTQENCRNSIFLTPNLLPENQNGLSNRNTQPDKLTTKSNDIILKSSPEKPLAFIISQNRPSTRRTTSGVKRKISKEEFVTPNKRKKPSNFPTDSQTDSPTDKKLSPISQNYDIPNKFWELMEPYCAEINEDHLKTLDNFIKSYENDVIYYEVPEAPAQNEGACENQSYGLNLRRNSIHEEVNHLNGFVDGKNGIDLSNLLKKIDIEISVTKKKPLSQPKALKDFPKKFVESMSNHTENFIKTHQNKVNESKNNGFVKTSQSSKSIAKQLKVSNSFKLERHIKKTAEDLGICNFNLPFIPKIQLEHDL-QHNEPDQMGITKSSEADIIDPMILNSDDYIELNLPQPSSPRKRKFDFKIKEDKALLGLSRRQAELKLVSESNLGMLRRLLIAAKRDTKRQEIERRLAVADADVIECYNIIESYRPTHKIPLKKDRDAAYRALKERRKILKELESLDTEFL 1650
            MRPSLNLRFGSGKGILSSSYVHHETIDLSSKYPVFNKVLNTNDVKLHDVSNLQVETEKIMCLLGYRMMNLSSLIDGKPMVLNGLTQENCRNSIFLTPNLLPENQNGLSNRNTQPDKLTTKSNDIILKSSPEKPLAFIISQNRPSTRRTTSGVKRKISKEEFVTPNKRKKPSNFPTDSQTDSPTDKKLSPISQNYDIPNKFWELMEPYCAEINEDHLKTLDNFIKSYENDVIYYEVPEAPAQNEGACENQSYGLNLRRNSIHEEVNHLNGFVDGKNGIDLSNLLKKIDIEI    +KPLSQPKALKDFPKKFVESMSNHTENFIKTHQNKVNESKNNGFVKTSQSSKSIAKQLKVSNSFKLERHIKKTAEDLGICNFNLPFIPKIQLEHDL QHNEPDQMGITKSSEADIIDPMILNSDDYIELNLPQPSSPRKRKFDFKIKEDKALLGLSRRQAELKLVSESNLGMLRRLLIAAKRDTKRQEIERRLAVADADVIECYNIIESYRPTHKIPLKKDRDAAYRALKERRKILKELESLDTEFL
Sbjct:    1 MRPSLNLRFGSGKGILSSSYVHHETIDLSSKYPVFNKVLNTNDVKLHDVSNLQVETEKIMCLLGYRMMNLSSLIDGKPMVLNGLTQENCRNSIFLTPNLLPENQNGLSNRNTQPDKLTTKSNDIILKSSPEKPLAFIISQNRPSTRRTTSGVKRKISKEEFVTPNKRKKPSNFPTDSQTDSPTDKKLSPISQNYDIPNKFWELMEPYCAEINEDHLKTLDNFIKSYENDVIYYEVPEAPAQNEGACENQSYGLNLRRNSIHEEVNHLNGFVDGKNGIDLSNLLKKIDIEI----RKPLSQPKALKDFPKKFVESMSNHTENFIKTHQNKVNESKNNGFVKTSQSSKSIAKQLKVSNSFKLERHIKKTAEDLGICNFNLPFIPKIQLEHDLQQHNEPDQMGITKSSEADIIDPMILNSDDYIELNLPQPSSPRKRKFDFKIKEDKALLGLSRRQAELKLVSESNLGMLRRLLIAAKRDTKRQEIERRLAVADADVIECYNIIESYRPTHKIPLKKDRDAAYRALKERRKILKELESLDTEFL 537

The following BLAST results are available for this feature:

BLAST of Transcriptional adapter 3 vs. Ensembl Human
BLAST of Transcriptional adapter 3 vs. Ensembl Celegans
BLAST of Transcriptional adapter 3 vs. Ensembl Fly
BLAST of Transcriptional adapter 3 vs. Ensembl Zebrafish
BLAST of Transcriptional adapter 3 vs. Ensembl Xenopus
BLAST of Transcriptional adapter 3 vs. Ensembl Mouse
BLAST of Transcriptional adapter 3 vs. UniProt/SwissProt
BLAST of Transcriptional adapter 3 vs. TrEMBL
BLAST of Transcriptional adapter 3 vs. Ensembl Cavefish
BLAST of Transcriptional adapter 3 vs. Ensembl Sea Lamprey
BLAST of Transcriptional adapter 3 vs. Ensembl Yeast
BLAST of Transcriptional adapter 3 vs. Ensembl Nematostella
BLAST of Transcriptional adapter 3 vs. Ensembl Medaka
BLAST of Transcriptional adapter 3 vs. Planmine SMEST

BLAST of Transcriptional adapter 3 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 3


Match Name	E-value	Identity	Description
TADA3	6.129e-11	40.43	transcriptional adaptor 3 [Source:HGNC Symbol;Acc:...	[more]
TADA3	6.129e-11	40.43	transcriptional adaptor 3 [Source:HGNC Symbol;Acc:...	[more]
TADA3	1.343e-6	39.66	transcriptional adaptor 3 [Source:HGNC Symbol;Acc:...	[more]

BLAST of Transcriptional adapter 3 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Transcriptional adapter 3 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Transcriptional adapter 3 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 4


Match Name	E-value	Identity	Description
tada3l	6.240e-12	40.43	transcriptional adaptor 3 (NGG1 homolog, yeast)-li...	[more]
tada3l	6.296e-12	40.43	transcriptional adaptor 3 (NGG1 homolog, yeast)-li...	[more]
tada3l	6.296e-12	40.43	transcriptional adaptor 3 (NGG1 homolog, yeast)-li...	[more]
tada3l	6.296e-12	40.43	transcriptional adaptor 3 (NGG1 homolog, yeast)-li...	[more]

BLAST of Transcriptional adapter 3 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2


Match Name	E-value	Identity	Description
tada3	2.894e-12	41.49	transcriptional adaptor 3 [Source:NCBI gene;Acc:49...	[more]
tada3	5.796e-12	41.49	transcriptional adaptor 3 [Source:NCBI gene;Acc:49...	[more]

BLAST of Transcriptional adapter 3 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 3


Match Name	E-value	Identity	Description
Tada3	2.224e-11	40.43	transcriptional adaptor 3 [Source:MGI Symbol;Acc:M...	[more]
Tada3	4.134e-11	40.43	transcriptional adaptor 3 [Source:MGI Symbol;Acc:M...	[more]
Tada3	5.170e-11	40.43	transcriptional adaptor 3 [Source:MGI Symbol;Acc:M...	[more]

BLAST of Transcriptional adapter 3 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q66JG5\|TADA3_XENTR	1.533e-11	41.49	Transcriptional adapter 3 OS=Xenopus tropicalis OX...	[more]
sp\|Q66IZ5\|TAD3B_XENLA	1.705e-11	41.49	Transcriptional adapter 3-B OS=Xenopus laevis OX=8...	[more]
sp\|Q6PGT0\|TAD3A_XENLA	1.705e-11	41.49	Transcriptional adapter 3-A OS=Xenopus laevis OX=8...	[more]
sp\|Q7SY21\|TADA3_DANRE	5.332e-11	40.43	Transcriptional adapter 3 OS=Danio rerio OX=7955 G...	[more]
sp\|Q5R5V0\|TADA3_PONAB	2.671e-10	40.43	Transcriptional adapter 3 OS=Pongo abelii OX=9601 ...	[more]

BLAST of Transcriptional adapter 3 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A075AD91	1.126e-29	66.67	Uncharacterized protein OS=Opisthorchis viverrini ...	[more]
R7TJI0	1.153e-29	28.72	Uncharacterized protein OS=Capitella teleta OX=283...	[more]
A0A4S2L7V0	9.033e-29	65.63	Uncharacterized protein OS=Opisthorchis felineus O...	[more]
A0A419PLY7	3.407e-28	64.58	Transcriptional adapter 3 OS=Clonorchis sinensis O...	[more]
A0A3S5CNH3	7.263e-28	59.00	Uncharacterized protein OS=Protopolystoma xenopodi...	[more]

BLAST of Transcriptional adapter 3 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 2


Match Name	E-value	Identity	Description
tada3l	1.686e-12	40.43	transcriptional adaptor 3 [Source:NCBI gene;Acc:10...	[more]
tada3l	9.823e-7	40.32	transcriptional adaptor 3 [Source:NCBI gene;Acc:10...	[more]

BLAST of Transcriptional adapter 3 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1


Match Name	E-value	Identity	Description
ENSPMAT00000003590.1	1.070e-10	37.76	pep scaffold:Pmarinus_7.0:GL490423:1883:5158:-1 ge...	[more]

BLAST of Transcriptional adapter 3 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Transcriptional adapter 3 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1


Match Name	E-value	Identity	Description
EDO41447	8.054e-10	37.23	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of Transcriptional adapter 3 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 3


Match Name	E-value	Identity	Description
tada3l	2.738e-13	43.62	transcriptional adaptor 3 [Source:NCBI gene;Acc:10...	[more]
tada3l	2.738e-13	43.62	transcriptional adaptor 3 [Source:NCBI gene;Acc:10...	[more]
tada3l	1.853e-7	43.55	transcriptional adaptor 3 [Source:NCBI gene;Acc:10...	[more]

BLAST of Transcriptional adapter 3 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2


Match Name	E-value	Identity	Description
SMESG000023288.1	0.000e+0	99.07	SMESG000023288.1	[more]
SMESG000023288.1	0.000e+0	98.89	SMESG000023288.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30005950 ID=SMED30005950|Name=Transcriptional adapter 3|organism=Schmidtea mediterranea sexual|type=transcript|length=1732bp
AATATGGTATTAAATAAGTTTTAAACATAAATGAGGCCATCATTAAATTT
AAGATTTGGCTCCGGTAAAGGTATTCTTTCTTCTTCATATGTTCATCATG
AAACAATAGACTTGTCTTCTAAATACCCTGTTTTTAATAAAGTACTCAAT
ACTAATGACGTGAAATTACATGATGTATCAAATTTGCAAGTTGAAACTGA
AAAGATAATGTGTTTACTTGGATATCGGATGATGAATTTATCTTCTCTGA
TTGATGGAAAACCCATGGTTTTAAATGGTTTAACACAAGAAAATTGTAGA
AATTCAATTTTTTTAACTCCAAATTTATTACCAGAAAATCAAAATGGGTT
GTCGAACAGAAATACTCAACCTGATAAATTGACGACTAAATCCAACGATA
TAATACTAAAATCAAGTCCAGAAAAGCCATTAGCATTTATTATTTCGCAA
AATCGCCCATCTACACGTCGTACAACAAGTGGTGTTAAACGAAAAATAAG
CAAAGAAGAATTTGTTACTCCAAATAAACGAAAGAAACCAAGCAATTTTC
CAACAGATTCACAAACTGATTCACCAACCGATAAAAAGCTTTCACCGATT
TCCCAAAACTATGATATACCAAACAAATTCTGGGAATTAATGGAACCGTA
TTGTGCTGAAATCAATGAAGACCACCTGAAAACATTGGATAATTTCATCA
AATCCTATGAAAATGATGTAATTTATTACGAAGTTCCTGAAGCGCCAGCT
CAAAATGAAGGCGCTTGTGAAAATCAATCATACGGTTTAAATTTACGTCG
AAACTCCATTCACGAAGAAGTGAATCATTTAAATGGATTTGTCGACGGGA
AAAATGGAATTGATCTATCAAATCTTCTAAAGAAAATCGATATCGAAATA
AGCGTCACAAAAAAAAAACCACTTTCTCAGCCGAAAGCATTAAAAGACTT
TCCGAAGAAATTCGTTGAAAGCATGTCTAACCATACGGAAAATTTTATCA
AAACCCATCAAAATAAAGTCAACGAATCCAAGAATAATGGGTTTGTCAAA
ACCAGCCAATCGTCGAAATCTATTGCCAAACAATTGAAAGTCAGTAATAG
TTTCAAGTTGGAAAGGCATATTAAGAAAACCGCCGAAGATTTGGGAATCT
GTAATTTCAATCTTCCTTTCATTCCTAAAATTCAGCTCGAACACGATTTG
CAGCACAATGAGCCCGATCAAATGGGAATTACGAAGAGCAGTGAGGCAGA
TATAATAGATCCGATGATTCTCAATTCCGATGATTACATTGAACTCAATT
TACCGCAACCTTCCAGTCCGAGAAAACGAAAATTCGATTTCAAAATCAAA
GAAGACAAAGCACTATTGGGATTGAGTCGGCGCCAGGCGGAACTGAAACT
CGTCAGCGAATCGAACCTCGGAATGCTCAGACGGCTGTTGATAGCCGCTA
AACGTGATACTAAACGACAGGAAATCGAAAGGCGATTGGCTGTTGCGGAT
GCTGATGTGATCGAGTGCTACAATATCATTGAAAGTTACAGACCTACTCA
CAAAATACCGCTGAAGAAAGATCGTGATGCTGCTTATCGGGCGCTGAAGG
AACGCAGAAAGATTCTAAAAGAATTGGAGTCCTTGGATACGGAATTTTTA
TGATTACTACTGATGCATTTTATTGTAAATAATCTTTTTATCTAGTAAAT
CGAATAAATTTTTCACTTTTCTTAAAAAAAAA

protein sequence of SMED30005950-orf-1

>SMED30005950-orf-1 ID=SMED30005950-orf-1|Name=SMED30005950-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=541bp
MRPSLNLRFGSGKGILSSSYVHHETIDLSSKYPVFNKVLNTNDVKLHDVS
NLQVETEKIMCLLGYRMMNLSSLIDGKPMVLNGLTQENCRNSIFLTPNLL
PENQNGLSNRNTQPDKLTTKSNDIILKSSPEKPLAFIISQNRPSTRRTTS
GVKRKISKEEFVTPNKRKKPSNFPTDSQTDSPTDKKLSPISQNYDIPNKF
WELMEPYCAEINEDHLKTLDNFIKSYENDVIYYEVPEAPAQNEGACENQS
YGLNLRRNSIHEEVNHLNGFVDGKNGIDLSNLLKKIDIEISVTKKKPLSQ
PKALKDFPKKFVESMSNHTENFIKTHQNKVNESKNNGFVKTSQSSKSIAK
QLKVSNSFKLERHIKKTAEDLGICNFNLPFIPKIQLEHDLQHNEPDQMGI
TKSSEADIIDPMILNSDDYIELNLPQPSSPRKRKFDFKIKEDKALLGLSR
RQAELKLVSESNLGMLRRLLIAAKRDTKRQEIERRLAVADADVIECYNII
ESYRPTHKIPLKKDRDAAYRALKERRKILKELESLDTEFL*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **biological process**
Term	Definition
GO:1903508	positive regulation of nucleic acid-templated transcription
GO:0006351	transcription, DNA-templated
GO:0006355	regulation of transcription, DNA-templated
GO:0006357	regulation of transcription from RNA polymerase II promoter
GO:0043966	histone H3 acetylation
GO:0043967	histone H4 acetylation

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0002109	X1 cell
PLANA:0002111	X2 cell

Vocabulary: **INTERPRO**
Term	Definition
IPR019340	Histone_AcTrfase_su3

Vocabulary: **cellular component**
Term	Definition
GO:0000124	SAGA complex
GO:0005634	nucleus
GO:0005671	Ada2/Gcn5/Ada3 transcription activator complex

Vocabulary: **molecular function**
Term	Definition
GO:0003713	transcription coactivator activity

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019340	Histone acetyltransferases subunit 3	PFAM	PF10198	Ada3	coord: 360..499 e-value: 3.9E-6 score: 27.0
IPR019340	Histone acetyltransferases subunit 3	PANTHER	PTHR13556	TRANSCRIPTIONAL ADAPTER 3-RELATED	coord: 103..237 coord: 308..536
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 152..166
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..189
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..189

Main menu

Transcriptional adapter 3

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 52

Owlery

blazegraph-runner