G-protein coupled receptor
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny AppSub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30005929 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 2
Homology
BLAST of G-protein coupled receptor vs. TrEMBL
Match: R7UAT5 (G_PROTEIN_RECEP_F2_4 domain-containing protein OS=Capitella teleta OX=283909 GN=CAPTEDRAFT_192473 PE=4 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.251e-13 Identity = 135/586 (23.04%), Postives = 234/586 (39.93%), Query Frame = 3 Query: 438 CYCDDQCSLFGDCCHKHQQHHEPIASCH--------DGYYVIDKCLYKSTDGNLKDKCE----RKSEISVNNLLYHVPTYGNYENVSLTFKNAFCAVCNGKNQFEF-------ARVEKHKTSLKRKKDNTTEKSNYKYTFPKEFQRICHENVIITCDDDSEDALKLLCRNQPTFYVTENRGMVQKIYRNAYCFLCNTNSLQWSYKY------RLVVPTEIKA----LDFXXXXXXXXXXXXXXYQI-----------------NQTTFRNHSDSISCTENK--NFQFFEKV----------LTVTFRIVSMISLLFMVLVFGCTNDHRNQASKITLFLTISVLSLCVTNIIFSVVEN--PSKRFCLYFSIAYHFCFLSSFFWMTIFALDVYKSITSPRLRINKTFALIKSRXXXXXXXXXXXXXXXXTITAVCIQKFDSENILNPSFGEIQCFINQLIGGLVWFFIPXXXXXXXXXXXXXXXYRFIYKINQQTVEVGHSLNVEKKNFILCIKLSILFGATWLPAFVGVFFNNYILKFIXXXXXXXXXXXXXXCFIYGMDVHKTTTKYIRSITENISSFATRKQSNA 2015 C C C F DCC K E +ASC YVID+C TD ++ KCE ++S + L VP G + + ++N FCA C+ F R+ + +++ ++ C V+ +C D + L C T V +N G+ Y+N C CN + ++ P I LD N L Y++ Q N I ENK N FE++ LT+ +S+ LL ++L + C RN K + L +S+L + +++ N + C+ ++ HF FLS F WM + A DV++S + ++ +SR FY L + LP ++ + + + F + + P++G+ C++ G LV F P+ I L+ N + + R + + + + S ++ +L +KL+++ G W+ F+ F++ IL +I L++ QGL + + F++ V + K T+ F T +S+A Sbjct: 48 CSCSPMCDFFDDCCDKESTQREEVASCRLRPTMPVRHFVYVIDRCPRDYTDDVIRGKCEDTKTGNDKLSTDGALPLVPVSG--ASSGMLYRNIFCAACHSVEDASFWVAEVPIRRLVAEEGAIRMAFQAALVAGRVTFSHLTFSAPFCRPRVVKSCPDSATKELASECVRGATSRVFQN-GIA---YKNIACASCNGANATSCVDPLPPLINHMIPPKRIMPYSLLLDLNTGSAALQTNRLGFYKVISLSDNSTNCSDLTYDPYQEKCSNLCSIIPSIENKVCNTSKFEEMVFKFDVGLGYLTLVGSALSIFGLLLLLLAYTCLPGLRNTPGKSLMSLAVSLL---LAQALYASGLNLMQPRSLCVSMAMFVHFFFLSQFCWMNVLAFDVWRSFRMHNIGLHSRLR-TRSRHFVFYCLYAWLLPAVVVLISFLLDLFQAS--IRPAYGQSFCWLGSRRGLLVLFASPISIMLIFNCGLFSLTARSLCIAGEDSDLLNLSRREHRRRLLLYVKLAVVMGLAWVFGFLATAFDSKILWYIFTALNTFQGLFICISFVFTQKVLRLLRK---KFTKGSGRFETSSRSHA 618
BLAST of G-protein coupled receptor vs. TrEMBL
Match: A0A4D5RNS5 (Putative g protein-coupled receptor OS=Ixodes scapularis OX=6945 PE=4 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.299e-11 Identity = 102/490 (20.82%), Postives = 204/490 (41.63%), Query Frame = 3 Query: 528 YYVIDKCLYKSTDGNLKDKCERKSEISVNNLLYHVPTYGNYENVSLTFKNAFCAVCN--GKNQFEFARVEKHKTSLKR-KKDNTTEKSNYKYTFPKEFQRICHENVIITCDDDSEDALKLLCRNQPTFY--VTENRGMVQKIYRNAYCFLCNTNSLQW--------------SYKYRLVVPTE---------IKALD---------FXXXXXXXXXXXXXXYQINQTTFRNHSDSISCTENKNFQFFEKVLTVTFRIVSMISLLFMVLVFGCTNDHRNQASKITLFLTISVLSLCVTNIIFSVVENPSKRFCLYFSIAYHFCFLSSFFWMTIFALDVYKSITSPRL--RINKTFALIKSRXXXXXXXXXXXXXXXXTITAVCIQKFDSENILNPSFGEIQCFINQLIGGLVWFFIPXXXXXXXXXXXXXXXYRFIYKINQQTVEVGHSLNVEK---KNFILCIKLSILFGATWLPAFVGVFFNNYILKFI 1871 +Y++ CL +++ CE Y +P + + +T+KN +CA+CN N + +E + + K + Y + P R E+ TC + + + + C+ TFY +T + YRN YC +CN +L Y+ ++P ++ D F + NQT + H +F + LT+ +S+ L V+VF + R+ +SK TL L+I++L + ++ + + S C ++ H+ FLS+FFW ++ + D+++SIT+ +L R N T A + +G P+++ + A + ++++P +G C+I ++ + +F P+ I L I++ +I K + + +++ + L ++L+++ GATW F+GVF ++ + + Sbjct: 120 FYMVTGCLPDWPIDDVRKACEESRNF--KETFYKIPVTSSTD---ITYKNGYCALCNYDLANTTFWNAIETPSSPITYFKLPDIIATQPYLHLRP--CSRRPQED---TCPEGTSENIVQKCK---TFYAPITTLKDEESPEYRNVYCAMCNGANLSALSCKPAEELSRFPVPYRQIAILPDPNLVTIFHPVLRTEDCYVKHRNRCFIKSPPELLRRQHDENSTNQTERKQH--------EMHFYTVQNYLTIVCVSLSICCLFLKVVVFSIYKEARSFSSKCTLCLSITLLMTQLLFLLVNSFKV-SAPVCTASAMLVHYGFLSTFFWTSVISFDIWRSITAAKLSSRRNSTLAFYS--------VTAWGAPMIIVVIAATVNWLAPTSLMSPLYGYSSCWIGRIWAQIAYFLAPMAILLAIGIVLYLNTVFYIRKTTDRARDFESKDGIQRSQHSHMTLFVRLALIMGATWGVGFLGVFVDSTVTDIL 579
BLAST of G-protein coupled receptor vs. TrEMBL
Match: A0A147BLH7 (Putative g protein-coupled receptor OS=Ixodes ricinus OX=34613 PE=4 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.090e-11 Identity = 63/253 (24.90%), Postives = 127/253 (50.20%), Query Frame = 3 Query: 1146 FQFFEKVLTVTFRIVSMISLLFMVLVFGCTNDHRNQASKITLFLTISVLSLCVTNIIFSVVEN--PSKRFCLYFSIAYHFCFLSSFFWMTIFALDVYKSITSPRLRINKTFALIKSRXXXXXXXXXXXXXXXXTITAVCIQKFDSENILNPSFGEIQCFINQLIGGLVWFFIPXXXXXXXXXXXXXXXYRFIYKINQQTVEVGHSLNVEKKNFI---------LCIKLSILFGATWLPAFVGVFFNNYILKFI 1871 F + LT+ +S+ L V+VF D R+ +SK TL L+I++L +T ++F +V + S+ C ++ HF FLS+FFW ++ + D+++ IT+ L + + R L Y + +G P+++ A + ++++P +G C+I + + +F P+ + L+ +++ +I K GH+ + E K+ + L ++L+++ GATW F+GVF ++ + + Sbjct: 356 FYTVQNYLTIVCVSLSICCLFLKVVVFSIYKDARSFSSKCTLCLSITLL---MTQLVFLLVNSFKVSRAVCTASAMLVHFGFLSTFFWTSVLSFDIWRGITAVNL------SSTRKRTLALYSVVAWGAPMIIVTVAAMVNWLAPTSLVSPLYGISSCWIGSIWAQITYFLAPMAVLLVIGVVLYLNTVFYIRKTT------GHARDFEFKDGVQQSQHSHMALYVRLALIMGATWGVGFLGVFVDSTVTDIL 593
BLAST of G-protein coupled receptor vs. TrEMBL
Match: B7QM22 (7 transmembrane receptor (Secretin family) superfamily protein OS=Ixodes scapularis OX=6945 GN=8043291 PE=4 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.113e-10 Identity = 105/435 (24.14%), Postives = 177/435 (40.69%), Query Frame = 3 Query: 663 LTFKNAFCAVCNGKNQFEFARVEKHKTSLKRKKDNTTEKSNYKYTFPKEFQRIC--HENVIITCDDDSEDALKLLCRNQPTFYVTENRG-MVQKIYRNAYCFLCN-TNSLQWSYKYRLVVPTEIKALDFXXXXXXXXXXXXXXYQINQTTFRNHSD--------------------------SISCTENKNFQFFEKVLTVTFRIVSMISLLFMVLVFGCTNDHRNQASKITLFLTISVLSLCVTNIIFSVVENPSKRFCLYFSIAYHFCFLSSFFWMTIFALDVYKSITSPRLRINKTFALIKSRXXXXXXXXXXXXXXXXTITAVCI--QKFDSENILNPSFGEIQCFINQLIGGLVWFFIPXXXXXXXXXXXXXXXYRFIYKINQQTVEVGHSLNVEKKNFILCIKLSILFGATWLPAFVGVFFNNYILKFI 1871 +T++NAFCA+CN + A + TS R+ T P R C H + +C + S+ C F + +G + IY+N YC LCN + L+ LVVP E L N LL+ + + F HS+ + + +E + + + LTV +S++ LL LV+ R +S+ TL L+ ++ + ++ + +E P C +I H+ FLS+FFW ++ + D++K++ RL ++ I L I A+C+ +L+P + C+I G + +F P+ L+ +I + + I K +Q ++ + L IKL + G TWL FVGVF NN + I Sbjct: 159 VTYRNAFCALCN--YDLDNATTFWNATSKIRRYFKVTTPDMADENKPLHL-RPCAFHTRINDSCLEGSDSETVRRCHTY--FAPVKPKGNESEVIYKNIYCGLCNGADPLELECAPMLVVP-ETWFLPQLRSGRPNLLSLLRPVLTSDSCFSWHSNKCYIRAPQYRYNASVTGANASLVNGTNATASEQQPYDI-QNYLTVVCVSLSLLCLLLKGLVYILYKSSRTFSSRCTLCLSATLFWSQLIFLLVNSLEVPHS-VCTGSAIVLHYGFLSTFFWTSVLSFDIWKNVAGVRLTSGRSSGFIA--------YCLIAWGGPLAIVAICVLLNWTAPTFVLSPRYARRGCWIGSFWGQVTFFLFPMFALLILDIGLYVHIVYHIRKTVKQAANFDFRGGAQRSHMALFIKLGFIIGTTWLLGFVGVFVNNVAMDII 577
BLAST of G-protein coupled receptor vs. TrEMBL
Match: A0A3S3P2X5 (G_PROTEIN_RECEP_F2_4 domain-containing protein (Fragment) OS=Dinothrombium tinctorium OX=1965070 GN=B4U79_14444 PE=4 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.332e-9 Identity = 63/243 (25.93%), Postives = 112/243 (46.09%), Query Frame = 3 Query: 1155 FEKVLTVTFRIVSMISLLFMVLVFGCTNDHRNQASKITLFLTISVLSLCVTNIIFSVVENP----SKRFCLYFSIAYHFCFLSSFFWMTIFALDVYKSITSPRLRINKTFALIKSRXXXXXXXXXXXXXXXXTITAVCIQKFDSENILNPSFGEIQCFINQLIGGLVWFFIPXXXXXXXXXXXXXXXYRFIYKINQQTVEVGHSLNVEKKNFILCIKLSILFGATWLPAFVGVFFNNYILKFI 1871 ++ + T + +S++ L ++++ N K + L+ ++L + NI F++ + S CL ++ H+ +L+SFFWM + + D+YK S L + +R Y L + P + +C F ENI P +G C+IN+ L++F IPL + N I + + K N +T + + N + N +L +KLS+ G TW+ V F N I F+ Sbjct: 351 WKSLFTEVIQKLSIVGLSLHLIIYSLVPKLHNVPGKCLMSLSFALL---MANICFAIAASTYIIQSSSLCLTVALFVHYFYLASFFWMNVISFDMYKCFDSGLLSLRS----WDNRCFLVYSLYSWLSPAAFVVVGLCFDVFTEENIFQPLYGFSLCWINRRSALLIYFGIPLTTIISVNTIFFTLTAMSLIKTNCETSLIRN--NQTEINILLHLKLSLTMGLTWIFGIVFAFTENTIFWFL 584
BLAST of G-protein coupled receptor vs. Ensembl Nematostella
Match: EDO34420 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SPE2]) HSP 1 Score: 59.6918 bits (143), Expect = 2.741e-9 Identity = 55/225 (24.44%), Postives = 99/225 (44.00%), Query Frame = 3 Query: 1164 VLTVTFRIVSMISLLFMVLVFGCTNDHRNQASKITLFLTISVLSLCVTNIIFSVVENPSKRFCLYFSIAYHFCFLSSFFWMTIFALDVYKSITSPRLRINKTFALIKSRXXXXXXXXXXXXXXXXTITAVCIQKFDSENILNPSFGEIQ-CFINQLIGGLVWFFIPXXXXXXXXXXXXXXXYRFIYKINQQTVEVGHSLNVEKKNF-ILCIKLSILFGATWLPAF 1832 LT+ +SMISL+ ++ + + RN ++ L L I++L + + F V ++ ++ C+ +++ HF LS+F WM + A DV+ + T P R + + ++TI+ D +G + CFI L F +P+ I LL N I I + ++T + + K N I+C K++ G TW+ A+ Sbjct: 413 ALTIAGCALSMISLVVLIFSYAVLPELRNLPGRVVLSLAITMLLYHL--LYFLVNQSDTRALCVAVAVSLHFALLSAFCWMNVLAFDVHHTFTKPGQRRTASRGHCPGTYAIYAAYSWGIPLAIVTISF----SVDLSGSWRIGYGRGEYCFIENPSAMLYLFLLPVAIILLYNFIALFHTMWHIRAVRKKTSKASN--QQRKPNLPIICFKMTSAMGITWVLAY 629 HSP 2 Score: 48.521 bits (114), Expect = 9.358e-6 Identity = 48/213 (22.54%), Postives = 83/213 (38.97%), Query Frame = 3 Query: 426 SETHCYCDDQCSLFGDCCHKHQQHHEPIASCHDGYYVIDKCLYKST--------------DGNLKDKCERKSEISVNNLLYHVPTYGNYENVSLTFKNAFCAVCNGKNQFEFARVEK-------HKTSLKRKKDNTTEKSNYKYTFPKEFQRICHENVIITCDDDSEDALKLLCRNQPTFYVTENRGMVQKIYRNAYCF-LCN-TNSLQWSYK 995 S+ C+CDD C F DCCH +++ + V D C ++ + DG +R S + ++ + +P ++N FCAVC ++ + R E T++ + + +Y+ P R H I L P+ +VTEN + K + ++Y F +C TN +Q+ YK Sbjct: 46 SQPKCFCDDMCVAFKDCCHDYEKKCGRPSVIESRESVEDICTFRRSHSTPYGFIFKRTCPDGTAHALSQRCSTVRDDDYMSSLPVIDVTSRTP--YRNLFCAVCRKADEISWWRAEAVCPNSTIDYTNMSKVRHFIASNCTMRYS-PSNAIRDLHPICI--------PPLTTPIIGTPSSHVTENVTEIIKEFCDSYAFPVCVITNGVQYMYK 247
BLAST of G-protein coupled receptor vs. Ensembl Nematostella
Match: EDO41825 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S3B6]) HSP 1 Score: 53.5286 bits (127), Expect = 2.555e-7 Identity = 43/167 (25.75%), Postives = 76/167 (45.51%), Query Frame = 3 Query: 1164 VLTVTFRIVSMISLLFMVLVFGCTNDHRNQASKITLFLTISVLSLCVTNIIFSVVENPSKRFCLYFSIAYHFCFLSSFFWMTIFALDVYKSITSPRLRINKTFALIKSRXXXXXXXXXXXXXXXXTITAVCIQKFDS--ENILNPSFGEIQCFINQLIGGLVWFFIP 1658 ++T+ +SM++L+F+ + G + RN KI + L ++L V ++ V N + C +I HF L++F WM + A DV+++ T N+ A+++S + I +C+ DS L+ G C+I+ G L F IP Sbjct: 605 IMTLAGSTISMLALIFLFVCHGYFPELRNFPGKIQINLAAALLMFHVFFLMVGV--NSVRGLCKVVAIGIHFFLLAAFLWMAVMAYDVHRTFT------NQEKAMVQSSRRLLKVYALVAWITPAAIVILCL-VIDSLLSGSLDYGTGAF-CYISSRWGLLFAFVIP 761 HSP 2 Score: 53.1434 bits (126), Expect = 2.930e-7 Identity = 36/125 (28.80%), Postives = 57/125 (45.60%), Query Frame = 3 Query: 411 SRCVGSE----THCYCDDQCSLFGDCCHKH-----------QQHHEPIASCHDGYYVIDKCLYKSTDGNLKDKCERKSEISVNN---LLYHVPTYGNYENVSLTFKNAFCAVCNGKNQFEFARVE 731 +RC SE CYCD C+ GDCC+ + ++ P C +GYY+ C ++TD L +C E N LL ++P N ++T+KN++CA C+ + + E Sbjct: 217 NRCGASERTTQQKCYCDVICNEIGDCCYDYRSKCNITSTAPRRESTPKRQCSNGYYIARTCP-ENTDRYLDGQCTADGETPSTNDRDLLRNLPVLD--RNTNVTYKNSYCAKCHMATKLTYWTAE 338
BLAST of G-protein coupled receptor vs. Ensembl Nematostella
Match: EDO31990 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SWC9]) HSP 1 Score: 49.2914 bits (116), Expect = 4.550e-6 Identity = 54/221 (24.43%), Postives = 86/221 (38.91%), Query Frame = 3 Query: 426 SETHCYCDDQCSLFGDCCHKH----------QQHHEPIASCHDGYYVIDKCLYKSTDGNLKDKCERKSEISVNNLLYHVPTYGNYENVSLTFKNAFCAVCNGKNQ--FEFARVEKHKTSLKRKKDNTT-------EKSNYKYTFPKEFQRICHENVIITCD---------DDSEDALKLLCRN-----QPTFYVTENRGM-VQKIYRNAYCFLC-NTNSLQ 983 S + CYCDD CS GDCC+ + ++ +C DG I +C + + NLL P Y + VS ++N CA+CN F + +V K S+ N T +K ++Y + +++ ++ TC D + + LC PT + RG+ + K RN +C +C N S Q Sbjct: 5 SPSKCYCDDLCSSLGDCCYDYIPRCENATEWRKLGPGTRTCVDGVIAISRCPSLTIASKAVISGCHSASSQPENLLSGAPVYDYAQGVS--YRNLDCALCNNATNVTFWYLKVACPK-SVSTALGNMTALLIDVRDKCTWEYQVKNDMKKLTCQSPDDTCKRGLSGDSVIDRYQAIVHDLCHMYALPIYPTLMLHVGRGLQIFKPIRNPHCLVCLNITSPQ 222
BLAST of G-protein coupled receptor vs. Ensembl Nematostella
Match: EDO37470 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SFI6]) HSP 1 Score: 49.2914 bits (116), Expect = 5.642e-6 Identity = 39/129 (30.23%), Postives = 58/129 (44.96%), Query Frame = 3 Query: 396 FQVDDSRCVGS----------ETHCYCDDQCSLFGDCCHKHQQ------HHEPIAS--CHDGYYVIDKCLYKSTDGNLKDKC-ERKSEI--SVNNLLYHVPTYGNYENVSLTFKNAFCAVCNGKNQFEF 719 F++ C+G ET CYCD C GDCCH +++ +P C + Y V + C K TD L C E EI +LL ++ + + +N+S ++N FCA CNG + Sbjct: 34 FEIPSLTCLGRCEVHSERFQIETLCYCDSICLQIGDCCHDYRKVCKAKLSEKPQVKQVCSNHYIVTNSC-PKGTDQYLDGLCSETHGEILRRPYDLLRNLHVFDHDKNIS--YRNVFCARCNGARNTSY 159
BLAST of G-protein coupled receptor vs. Planmine SMEST
Match: SMESG000067292.1 (SMESG000067292.1) HSP 1 Score: 981.474 bits (2536), Expect = 0.000e+0 Identity = 548/551 (99.46%), Postives = 550/551 (99.82%), Query Frame = 3 Query: 369 AKSLESQASFQVDDSRCVGSETHCYCDDQCSLFGDCCHKHQQHHEPIASCHDGYYVIDKCLYKSTDGNLKDKCERKSEISVNNLLYHVPTYGNYENVSLTFKNAFCAVCNGKNQFEFARVEKHKTSLKRKKDNTTEKSNYKYTFPKEFQRICHENVIITCDDDSEDALKLLCRNQPTFYVTENRGMVQKIYRNAYCFLCNTNSLQWSYKYRLVVPTEIKALDFXXXXXXXXXXXXXXYQINQTTFRNHSDSISCTENKNFQFFEKVLTVTFRIVSMISLLFMVLVFGCTNDHRNQASKITLFLTISVLSLCVTNIIFSVVENPSKRFCLYFSIAYHFCFLSSFFWMTIFALDVYKSITSPRLRINKTFALIKSRXXXXXXXXXXXXXXXXTITAVCIQKFDSENILNPSFGEIQCFINQLIGGLVWFFIPXXXXXXXXXXXXXXXYRFIYKINQQTVEVGHSLNVEKKNFILCIKLSILFGATWLPAFVGVFFNNYILKFIXXXXXXXXXXXXXXCFIYGMDVHKTTTKYIRSITENISSFATRKQSNASI 2021 AKSLESQASFQVDDSRCVGSETHCYCDDQCS+FGDCCHKHQQHHEPIASCHDGYYVIDKCLYKSTDGNLKDKCERKSEISVNNLLYHVPTYGNYENVSLTFKNAFCAVCNGKNQFEFARVEKHKTSLKRKKDNTTEKSNYKYTFPKEFQRICHENVIITCDDDSEDALKLLCRNQPTFYVTENRGMVQKIYRNAYCFLCNTNSLQWSYKYRLVVPTEIKALDFNEWCLNNCNELLKLYQINQTTFRNHSDSISCTENKNFQFFEKVLTVTFRIVSMISLLFMVLVFGCTNDHRNQASKITLFLTISVLSLCVTNIIFSVVENPSKRFCLYFSIAYHFCFLSSFFWMTIFALDVYKSITSPRLRINKT +LIKSRKLKFYFLGGYGLPLLLTITAVCIQKFDSENILNPSFGEIQCFINQLIGGLVWFFIPLCICLLTNIIICCVLYRFIYKINQQTVEVGHSLNVEKKNFILCIKLSILFGATWLPAFVGVFFNNYILKFIGGLLSSLQGLSLSLCFIYGMDVHKTTTKYIRSITENISSFATRKQSNASI Sbjct: 13 AKSLESQASFQVDDSRCVGSETHCYCDDQCSMFGDCCHKHQQHHEPIASCHDGYYVIDKCLYKSTDGNLKDKCERKSEISVNNLLYHVPTYGNYENVSLTFKNAFCAVCNGKNQFEFARVEKHKTSLKRKKDNTTEKSNYKYTFPKEFQRICHENVIITCDDDSEDALKLLCRNQPTFYVTENRGMVQKIYRNAYCFLCNTNSLQWSYKYRLVVPTEIKALDFNEWCLNNCNELLKLYQINQTTFRNHSDSISCTENKNFQFFEKVLTVTFRIVSMISLLFMVLVFGCTNDHRNQASKITLFLTISVLSLCVTNIIFSVVENPSKRFCLYFSIAYHFCFLSSFFWMTIFALDVYKSITSPRLRINKTISLIKSRKLKFYFLGGYGLPLLLTITAVCIQKFDSENILNPSFGEIQCFINQLIGGLVWFFIPLCICLLTNIIICCVLYRFIYKINQQTVEVGHSLNVEKKNFILCIKLSILFGATWLPAFVGVFFNNYILKFIGGLLSSLQGLSLSLCFIYGMDVHKTTTKYIRSITENISSFATRKQSNASI 563
BLAST of G-protein coupled receptor vs. Planmine SMEST
Match: SMESG000033614.1 (SMESG000033614.1) HSP 1 Score: 112.849 bits (281), Expect = 7.586e-26 Identity = 150/580 (25.86%), Postives = 256/580 (44.14%), Query Frame = 3 Query: 426 SETHCYCDDQCSLFGDCCHKHQQHHEP-----IASCH-------DGYYVIDKCLYKSTDGNLKDKCERKSEISVNNLLYHVPTYGNYENVSLTFKNAFCAVCNGKNQFEFARVEKHKTSLK-----RKKDNTTEKSNYKYTFP---KEFQRICHENVIITCDDDSEDALKLL---CRNQPTFYVTENRGMVQKIYRNAYCFLC-NTNSLQWSYKYRLVVPTEIKALDFXXXXXXXXXXXXXXYQINQTTFRNHSDSISCTENKNFQ------------------FFEKVL---TVTFRIVSMISLLFMVLVFGCTNDHRNQASKITLFLTISV-----LSLCVTNIIFSVVENPSKRFCLYFSIAYHFCFLSSFFWMTIFALDVYKSITSPRLRINKTFALIKSRXXXXXXXXXXXXXXXXTITAVCIQKFDSEN-ILNPSFGEIQCFINQLIGGLVWFFIPXXXXXXXXXXXXXXXYRFIYKINQQTVEVGHSLNVEKKNFILCIKLSILFGATWLPAFVGVFFNNYILKFIXXXXXXXXXXXXXXCFIYGMDVHKTTTKYIRSITENISSFATRKQSN 2012 S+ C+ D QC L+GDCC+ HQ H +P + SC ++I+KC K+ + L D C +K L +P N + + + N FCA CN + F + V+ + L+ + N+ FP + QR C +I C + K + C N Y +QK Y+N +C C N N R +P I+ F+ Y +N + + + E KNF E V+ + F +S++SL F+++++ +N +T+ L+I + +SL VTN +V++ S C Y +I +HF LS+F WM ++ALD+ ++ + INK + YF+ + + + +V I+ FD N L P +G C+ GGL+W+FIP+C+ LL NII C ++ ++K ++ + + N LC++L+ +FG ++ + +F IL +G +++ LQG L+LCF+ V + +ITE+IS +T + + Sbjct: 22 SDRICHSDPQCPLYGDCCYGHQDHGKPGLLKDVLSCKPYNKLFPSAMWLINKC--KNLNHPLSDFCTKKIFYPKAPLKSWIPVISNRK---IIYDNLFCAKCNEEIDFTYLPVKVNCGPLEIYDYASANQAVIDNPNHCEIFPYFNRTLQRSCEGEIITNCTNTKLIQNKFVIDKCENGEKDYFVFR---LQK-YKNVFCCKCWNKNCFG-----RRKLP-NIRNSPFS-------------YLLNFNDWEKQENKETVKE-KNFTQENNSSNNTNSTLDYSTGMGETVIYHISFAFTCLSLVSLFFLIILYLTHQVFKNLGGYLTICLSICLWLINFMSLLVTNT--QIVKSAS---CKYLAIFHHFVALSTFVWMAVYALDLLQTFGTKSASINKNRGW---KTFCIYFICVFAVSGCVVGISVIIEYFDKTNSTLRPQYGGPHCWFTSKFGGLIWYFIPVCLLLLWNIITCGFVFYQLFKTAKECRIINN--NDLNSTLWLCMRLTAVFGVGYVLQIIAIFTQLNILISLGSMVNCLQGFMLTLCFVCTKRVRSQLRNRLLTITESISKSSTANRPS 562
BLAST of G-protein coupled receptor vs. Planmine SMEST
Match: SMESG000033611.1 (SMESG000033611.1) HSP 1 Score: 108.612 bits (270), Expect = 2.083e-24 Identity = 142/583 (24.36%), Postives = 265/583 (45.45%), Query Frame = 3 Query: 414 RCVGSETHCYCDDQCSLFGDCCHKHQQHHEPIA------------SCHDGYYVIDKCLYKSTDGNLKDKCERK----SEISVNNLLYHVPTYGNYENVSLTFKNAFCAVCNGKNQFEFARVE------------KHKTSLKRKKDNTTEKSNYKYTFPKEFQRICHENVIITCDDDSEDALKLL---CRNQPTFYVTENRGMVQKIYRNAYCFLCNTNSLQWSY---KYRLVVPTEIKALDFXXXXXXXXXXXXXXYQINQTTFRNHSDSISCTENKNFQFFEKVLTVTFRIVSMISLLFMVLVFGCTNDHRNQASKITLFLTISVLSLCVTNIIFSVVENPS---KRFCLYFSIAYHFCFLSSFFWMTIFALDVY-----KSITSPRLRINKTFALIKSRXXXXXXXXXXXXXXXXTITAVCIQKFDSENILNPSFGEIQCFINQLIGGLVWFFIPXXXXXXXXXXXXXXXYRFIYKINQ--QTVEVGHSLNVEKKNFILCIKLSILFGATWLPAFVGVFFNNYILKFIXXXXXXXXXXXXXXCFIYG-------MDVHKTTTKYIRSITENISSFATRKQS 2009 +C + +C CDD+C+L+GDCC H+ ++ + S + YV+DKC K+ ++ K RK S+I V + + + G + F+N+FCA CN ++ + + + ++ + +D+ + + +RIC +I C + ED + + C N P + E G + +YRN +C C W + +++ PT I + + LN + + ++ + +N+++ ++KN ++F ++ TF +SMISL +++++ N +T+ L+I L + N +V++P+ FC Y I HF + +F WM I+ALD+ KS S + + KTF + +G L++T++ V ++ + P++G C+ +GG VW+FIP+CI LL N C +++ I K ++ Q V S ++ LCI+L+ +FG ++ + + + L G ++ LQG L+ CFI+ +DV + T EN+ + T +S Sbjct: 21 KCEKNSEYCNCDDKCTLYGDCCSGHESFNKTGSLRNILKCKLFKPSVAESIYVVDKC--KNNTKHILSKLCRKEVIFSKIPVKSFIPVINENG------VIFENSFCAKCNNEDLYSYLNISISCPDVNITDIYDANQAIAKSRDSCEIQPEIE----SNIKRICKTKLIDFCSNSFEDIGENITGKCTNGPESF--EVHGEI--LYRNTFCCKC------WKIHCRRLQVMKPTSILDMSTFSYLLNFNDWVESEDEVYKPE-QNNTEFDEIIKSKNLKYFVYYISFTFTCLSMISLTVLIVLYITQKVFHNFGGYLTICLSIC---LWLINFCTLLVQSPNIVNSSFCQYLGIFQHFITICNFIWMAIYALDLLQTFGVKSFNSSKKKTWKTFCF-------YCLVGFSCSGLIVTLSTVLEFTLETNCTIRPNYGGTHCWFTNKLGGTVWYFIPICILLLWNFGACILVFYRIIKTSKECQLVSNDQSYSI----LWLCIRLTSVFGFGYIFQIIAILTHFQPLIVFGSFVNCLQGCLLACCFIWTKRVRIIFVDVLTSFTDIFSKSNENVDKYKTTNKS 566
BLAST of G-protein coupled receptor vs. Planmine SMEST
Match: SMESG000033610.1 (SMESG000033610.1) HSP 1 Score: 75.485 bits (184), Expect = 5.540e-14 Identity = 127/544 (23.35%), Postives = 226/544 (41.54%), Query Frame = 3 Query: 417 CVGSETHCYCDDQCSLFGDCCHKHQQHH-----EPIASC-------HDGYYVIDKCL----YKS---TDGNLKDKCERKSEISVNNLLYHVPTYGNYENVSLTFKNAFCAVCNGKNQFEFARVE----KHKTSLKRKKDNTTEKSNYKYT----FPKEFQRICHENVIITCDDDSE---DALKLLCRNQPTFYVTENRGMVQKIYRNAYCFLCNTNSLQWSYKYRLVVPTEIKALDFXXXXXXXXXXXXXXYQINQTTFRNHSDSISCTENKNFQFFEKVLTVTFRIVSMISLLFMVLVFGCTNDHRNQASKITLFLTISVLSLCVTNIIFSVVENPSKRFCLYFSIAYHFCFLSSFFWMTIFALDVYKSITSPRLRINKTFALIKSRXXXXXXXXXXXXXXXXTITAVCIQKFDSEN--ILNPSFGEIQCFINQLIGGLVWFFIPXXXXXXXXXXXXXXXYRFIYKINQQTVEVGHSLNVEKKNFILCIKLSILFGATWLPAFVGVFFNNYILKFIXXXXXXXXXXXXXXCFIYGMDVHKTTT 1952 C S+ +C CD C FGDCC H++ E I+SC ++ VI+KC+ Y S T + K KS +V EN L ++N +CA CN ++++ + H + ++ + KS Y + E QR C N+ C + D + +C N V++ R YRN +C C+ ++ + L + A F+ NE+ + Q+ N + + E ++ F+K T F +SM+ L ++L++ + RN +T+ L+ + N++ + C Y I+ F L F WM +++LD+ ++ I K K+ K ++ + + + + I +F N P +G C+ + GL+W+FIP+C+ LL N + C +++ I K +++ V LC++L+ +FG ++ + IL I + +SLQG L +CF + V T Sbjct: 20 CRKSDQYCQCDKICVQFGDCCPGHEKFQQTGSLESISSCKVFAKNSYENMRVINKCVNDNHYYSKYCTKELMDPKLPIKSFAAVMG-----------EN-KLIYENYYCARCNNIKRYQYFSLSVSCFGHNITNFKQVNEIMIKSPYSCSILPLIDSELQRTCFINLTRLCQEPLSKRFDNVSDMCLNGKLDIVSDGRNF----YRNDHC--CSCRNISCFKQIPLALDVASSAFSFSLNFAAWENEVQTK-PVPQSNLTNKYFTHNVYE-IIYKIFDKT-TEVFTFLSMVCLFILILLYTTQSMFRNFGGYLTVCLSTCLWLSNFFNLLVFYKDFEKSFACTYIGISQQFFNLGMFVWMAVYSLDLLQTFGFRSTNIGKK----KTLKSFCFYCITGFSCVAINVGSAIIVEFTLPNNSTFRPKYGGRYCWFTNIPSGLIWYFIPVCLLLLWNSVTCVIVFYRIIKTSKECRVVQKK--ESNSTLWLCVRLTTVFGLGYVLQIFAILSKVDILVRILVVFNSLQGCFLMICFFWAKRVRAILT 536
BLAST of G-protein coupled receptor vs. Planmine SMEST
Match: SMESG000033615.1 (SMESG000033615.1) HSP 1 Score: 71.2478 bits (173), Expect = 8.940e-13 Identity = 80/286 (27.97%), Postives = 145/286 (50.70%), Query Frame = 3 Query: 1167 LTVTFRIVSMISLLFMVLVFGCTNDHRNQASKITLFLTISV-----LSLCVTNIIFSVVENPSKRFCLYFSIAYHFCFLSSFFWMTIFALDVYKSITSPRLRINKTFALIKSRXXXXXXXXXXXXXXXXTITAVCIQKFDSEN-ILNPSFGEIQCFINQLIGGLVWFFIPXXXXXXXXXXXXXXXYRFIYKINQQTVEVGHSLNVEKKNFILCIKLSILFGATWLPAFVGVFFNNYILKFIXXXXXXXXXXXXXXCFIYGMDVHKTTTKYIRSITENISSFATRKQ 2006 ++ F +S++SL F+++++ +N +T+ L+I + +SL VTN +VE+ S C Y +I +HF LS+F WM ++ALD+ ++ + + NK L + Y L G+ + +V + FD N L P +G C+ GGL+++FIP+C+ LL N I+C ++ ++K ++ V LC++L+ +FG ++ +F IL +G +++ LQG L+LCF+ + +ITE+IS +T + Sbjct: 128 ISFAFTCLSLVSLFFLIILYLTHQVFKNFGGYLTICLSICLWLINFMSLLVTNT--QIVESAS---CKYLAIFHHFVALSTFVWMAVYALDLLQTFGTKLVNANKKRGL---KSFSVYCLIGFSTSGSVVGISVITEYFDKTNSTLRPQYGGPYCWFTSKFGGLIYYFIPVCLLLLWNFIMCSFVFYQLFKTAKECRIVKK--KDANSTLWLCMRLTAVFGVGYVLQIFAIFTQLEILISLGSMVNCLQGFMLTLCFVCTKRARSLLRNRLLTITESISKSSTANK 403 The following BLAST results are available for this feature:
BLAST of G-protein coupled receptor vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of G-protein coupled receptor vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of G-protein coupled receptor vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of G-protein coupled receptor vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of G-protein coupled receptor vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of G-protein coupled receptor vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of G-protein coupled receptor vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of G-protein coupled receptor vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of G-protein coupled receptor vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of G-protein coupled receptor vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of G-protein coupled receptor vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of G-protein coupled receptor vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 4
BLAST of G-protein coupled receptor vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of G-protein coupled receptor vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30005929 ID=SMED30005929|Name=G-protein coupled receptor|organism=Schmidtea mediterranea sexual|type=transcript|length=2085bpback to top protein sequence of SMED30005929-orf-1 >SMED30005929-orf-1 ID=SMED30005929-orf-1|Name=SMED30005929-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=564bp MLFLKFLLIFFLAKSLESQASFQVDDSRCVGSETHCYCDDQCSLFGDCCHback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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