protein C10
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30005881 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 2
Homology
BLAST of protein C10 vs. Ensembl Fly
Match: CG15387 (gene:FBgn0031403 transcript:FBtr0113015) HSP 1 Score: 53.5286 bits (127), Expect = 1.294e-9 Identity = 30/105 (28.57%), Postives = 65/105 (61.90%), Query Frame = 1 Query: 73 NTEDLKEIIREILSKISSPEXXXXXXXXXXXXXXXSTVYHMKHIFPIVVDIQLEIVEKHGYNSPDGFGIVEFINDVRQKAKEDFELFELHKELKMVTMPDFTLIT 387 N++ K+I+ +I+ ++ PE + KL+ KA+ K + M+H+FP+V+ +QLE+++ HG+ + G+V+F +R+ ++D E+ L +++ + +P + T Sbjct: 8 NSDTAKQILMDIIRCVNQPENSKKLSEAKASAGK-EMILMMQHVFPLVMQLQLEVIKGHGFPG-NREGLVQFSQLIREMERDDMEIVRLRSQIRAIYLPPIAINT 110
BLAST of protein C10 vs. TrEMBL
Match: E0VEZ6 (Uncharacterized protein OS=Pediculus humanus subsp. corporis OX=121224 GN=8239498 PE=4 SV=1) HSP 1 Score: 56.225 bits (134), Expect = 3.533e-7 Identity = 38/102 (37.25%), Postives = 61/102 (59.80%), Query Frame = 1 Query: 88 KEIIREILSKISSPEXXXXXXXXXXXXXXXSTVYHMKHIFPIVVDIQLEIVEKHGYNSPDGF-GIVEFINDVRQKAKEDFELFELHKELKMVTMPDFTLITE 390 K I+ E++ I+ PE A KL K + M+ +FPI+V IQ+E+++K+G+ PDG G+V+F+ +R +E+ E+ ELH ++K MP L TE Sbjct: 13 KAILTEMIEAINIPENASKLEQAKTNAGN-DMIKMMQFVFPIMVQIQMEVIKKYGF--PDGRDGMVQFLQLIRNIERENKEVAELHGQIKTHLMPPVNLNTE 111
BLAST of protein C10 vs. TrEMBL
Match: A0A3B0K457 (Blast:Protein C10 OS=Drosophila guanche OX=7266 GN=DGUA_6G012648 PE=4 SV=1) HSP 1 Score: 56.225 bits (134), Expect = 3.651e-7 Identity = 32/105 (30.48%), Postives = 66/105 (62.86%), Query Frame = 1 Query: 73 NTEDLKEIIREILSKISSPEXXXXXXXXXXXXXXXSTVYHMKHIFPIVVDIQLEIVEKHGYNSPDGFGIVEFINDVRQKAKEDFELFELHKELKMVTMPDFTLIT 387 N E+ K+I+ +I+ ++ PE + KL+ KA+ K + M+H+FP+V+ +QLE+++ HG+ + + G+V+F VR+ ++D E+ L +++ + +P + T Sbjct: 8 NNENAKQILMDIIRCVNQPENSKKLSQAKASAGK-EMLLMMQHVFPLVMQLQLEVIKGHGFPA-NREGLVQFSQLVREMERDDMEIARLRSQIRAIYLPPIAINT 110
BLAST of protein C10 vs. TrEMBL
Match: B4I2G6 (GM18252 OS=Drosophila sechellia OX=7238 GN=Dsec\GM18252 PE=4 SV=1) HSP 1 Score: 54.6842 bits (130), Expect = 1.162e-6 Identity = 31/105 (29.52%), Postives = 65/105 (61.90%), Query Frame = 1 Query: 73 NTEDLKEIIREILSKISSPEXXXXXXXXXXXXXXXSTVYHMKHIFPIVVDIQLEIVEKHGYNSPDGFGIVEFINDVRQKAKEDFELFELHKELKMVTMPDFTLIT 387 N+E K+I+ +I+ ++ PE + KL+ KA+ K + M+H+FP+V+ +QLE+++ HG+ + G+V+F +R+ ++D E+ L +++ + +P + T Sbjct: 8 NSETAKQILMDIIRCVNQPENSKKLSEAKASAGK-EMILMMQHVFPLVMQLQLEVIKGHGFPG-NREGLVQFSQLIREMERDDMEIVRLRSQIRAIYLPPIAINT 110
BLAST of protein C10 vs. TrEMBL
Match: B3N9H6 (Uncharacterized protein OS=Drosophila erecta OX=7220 GN=Dere\GG24545 PE=4 SV=1) HSP 1 Score: 54.6842 bits (130), Expect = 1.162e-6 Identity = 31/105 (29.52%), Postives = 65/105 (61.90%), Query Frame = 1 Query: 73 NTEDLKEIIREILSKISSPEXXXXXXXXXXXXXXXSTVYHMKHIFPIVVDIQLEIVEKHGYNSPDGFGIVEFINDVRQKAKEDFELFELHKELKMVTMPDFTLIT 387 N+E K+I+ +I+ ++ PE + KL+ KA+ K + M+H+FP+V+ +QLE+++ HG+ + G+V+F +R+ ++D E+ L +++ + +P + T Sbjct: 8 NSETAKQILMDIIRCVNQPENSKKLSEAKASAGK-EMILMMQHVFPLVMQLQLEVIKGHGFPG-NREGLVQFSQLIREMERDDMEIVRLRSQIRAIYLPPIAINT 110
BLAST of protein C10 vs. TrEMBL
Match: B4NW69 (Uncharacterized protein OS=Drosophila yakuba OX=7245 GN=Dyak\GE15185 PE=4 SV=1) HSP 1 Score: 54.6842 bits (130), Expect = 1.162e-6 Identity = 31/105 (29.52%), Postives = 65/105 (61.90%), Query Frame = 1 Query: 73 NTEDLKEIIREILSKISSPEXXXXXXXXXXXXXXXSTVYHMKHIFPIVVDIQLEIVEKHGYNSPDGFGIVEFINDVRQKAKEDFELFELHKELKMVTMPDFTLIT 387 N+E K+I+ +I+ ++ PE + KL+ KA+ K + M+H+FP+V+ +QLE+++ HG+ + G+V+F +R+ ++D E+ L +++ + +P + T Sbjct: 8 NSETAKQILMDIIRCVNQPENSKKLSEAKASAGK-EMILMMQHVFPLVMQLQLEVIKGHGFPG-NREGLVQFSQLIREMERDDMEIVRLRSQIRAIYLPPIAINT 110
BLAST of protein C10 vs. Planmine SMEST
Match: SMESG000004188.1 (SMESG000004188.1) HSP 1 Score: 195.282 bits (495), Expect = 2.964e-65 Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1 Query: 64 MTQNTEDLKEIIREILSKISSPEXXXXXXXXXXXXXXXSTVYHMKHIFPIVVDIQLEIVEKHGYNSPDGFGIVEFINDVRQKAKEDFELFELHKELKMVTMPDFTLITEKLNS 402 MTQNTEDLKEIIREILSKISSPEVALKLNNLKAANVKNSTVYHMKHIFPIVVDIQLEIVEKHGYNSPDGFGIVEFINDVRQKAKEDFELFELHKELKMVTMPDFTLITEKLNS Sbjct: 1 MTQNTEDLKEIIREILSKISSPEVALKLNNLKAANVKNSTVYHMKHIFPIVVDIQLEIVEKHGYNSPDGFGIVEFINDVRQKAKEDFELFELHKELKMVTMPDFTLITEKLNS 113 The following BLAST results are available for this feature:
BLAST of protein C10 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of protein C10 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of protein C10 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 1
BLAST of protein C10 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of protein C10 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of protein C10 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of protein C10 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of protein C10 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of protein C10 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of protein C10 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of protein C10 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of protein C10 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of protein C10 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of protein C10 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30005881 ID=SMED30005881|Name=protein C10|organism=Schmidtea mediterranea sexual|type=transcript|length=477bpback to top protein sequence of SMED30005881-orf-1 >SMED30005881-orf-1 ID=SMED30005881-orf-1|Name=SMED30005881-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=114bp MTQNTEDLKEIIREILSKISSPEVALKLNNLKAANVKNSTVYHMKHIFPIback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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