SMED30005820

Overview
NameSMED30005820
Smed IDSMED30005820
Length (bp)1271
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30005820 (SMED30005820) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30005820 (SMED30005820) in cells (dots) of each of the 12 neoblast clusters.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30005820

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30005820h1SMcG0003722 SmedASXL_014379SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016
whole organism asexual adult RNA-sequencing evidence
pharynxSMED30005820h1SMcG0003722 dd_Smed_v4_19517_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30005820h1SMcG0003722 dd_Smed_v4_19517_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30005820h1SMcG0003722 dd_Smed_v4_19517_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30005820h1SMcG0003722 dd_Smed_v4_19517_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30005820h1SMcG0003722 dd_Smed_v6_19517_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017
whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of SMED30005820 vs. TrEMBL
Match: A0A1I8JC43 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.921e-13
Identity = 64/261 (24.52%), Postives = 115/261 (44.06%), Query Frame = 3
Query:  339 GKNISCIEREKSCHLGQKCSTFWNSFKSFCQFHTCDKTGDQ---CVVSYEQLRHYGMFDCVCVPFYQHQPMLMKKCLIIQTSLLDNQCLAFLNN------------RIMYQTLTFGSNDNSRKTDPGTDNMPKQLQSLSKEIP---------NCLYLYQLCTQSSACLQRYMEIEKHCS------ICQNYTACLEATRSFYSKPDTISLNSIRCQCNHSSFNDPCHRQQQMFQPFCIKKGQRPI-INCLILMQACLNNTSC 1028
            G+  SC+ER   C     C+    +F+  C F    K   Q   C+ SYE LR++G+  C C+ + + + +   +C  I+     N CL F N+            +   Q +   S D+ RK+ P ++ + K  +  S   P         NC  +YQ C +   CLQR++ + + C        C++   CL    +FY+  D  + ++  C C   + +  C +   +F+P C  +      ++C+ L+++C  + SC
Sbjct:  397 GRGGSCLERRSRCFDNPTCAADARAFQDRCGFDDISKCPGQRAACLQSYEALRNHGLIPCTCLNYTRAERL---QCDRIRRVYPGNVCLRFFNDAYNIGLLHPKSSKDPQQRIGASSPDDDRKS-PDSEAVVKSSEGASVIHPSAFQLIKSANCFEVYQSCVRHFDCLQRFIALAQACEWMSGAGSCRDRALCLGQLEAFYAYADRFANDAATCGC--PADDSDCQQMSDIFRPRCAYEPPSGTPVDCVQLVESCRASRSC 651          
BLAST of SMED30005820 vs. TrEMBL
Match: A0A267FPV5 (Uncharacterized protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig008712g2 PE=4 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 8.133e-12
Identity = 64/261 (24.52%), Postives = 114/261 (43.68%), Query Frame = 3
Query:  339 GKNISCIEREKSCHLGQKCSTFWNSFKSFCQFHTCDKTGDQ---CVVSYEQLRHYGMFDCVCVPFYQHQPMLMKKCLIIQTSLLDNQCLAFLNN------------RIMYQTLTFGSNDNSRKTDPGTDNMPKQLQSLSKEIP---------NCLYLYQLCTQSSACLQRYMEIEKHCSI------CQNYTACLEATRSFYSKPDTISLNSIRCQCNHSSFNDPCHRQQQMFQPFCI-KKGQRPIINCLILMQACLNNTSC 1028
            G+  SC+ER   C     C+    +F+  C F    K   Q   C+ SYE LR++G+  C C+ + + + +   +C  I+     N CL F N+            +   Q +   S D+ RK+ P ++ + K  +  S   P         NC  +YQ C +   CLQR++ + + C        C++   CL    +FY+  D  + ++  C C     +  C +   +F+P C  +      ++C+ L+++C  + SC
Sbjct:  206 GRGGSCLERRSRCFDNPTCAADARAFQDRCGFDDISKCPGQRAACLQSYEALRNHGLIPCTCLNYTRAERL---QCDRIRRVYPGNVCLRFFNDAYNIGLLHPKSSKDPQQRIGASSPDDDRKS-PDSEAVVKSSEGASVIHPSAFQLIKSANCFEVYQSCVRHFDCLQRFIALAQACEWMSGAGSCRDRALCLGQLEAFYAYADRFANDAATCGCPADDSD--CQQMSDIFRPRCAYEPPSGTPVDCVQLVESCRASRSC 460          
BLAST of SMED30005820 vs. TrEMBL
Match: A0A267ERK2 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig008712g1 PE=4 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 9.101e-12
Identity = 64/261 (24.52%), Postives = 113/261 (43.30%), Query Frame = 3
Query:  339 GKNISCIEREKSCHLGQKCSTFWNSFKSFCQFHTCDKTGDQ---CVVSYEQLRHYGMFDCVCVPFYQHQPMLMKKCLIIQTSLLDNQCLAFLNN------------RIMYQTLTFGSNDNSRKTDPGTDNMPKQLQSLSKEIP---------NCLYLYQLCTQSSACLQRYMEIEKHCSI------CQNYTACLEATRSFYSKPDTISLNSIRCQCNHSSFNDPCHRQQQMFQPFCI-KKGQRPIINCLILMQACLNNTSC 1028
            G+  SC+ER   C     C+    +F+  C F    K   Q   C+ SYE LR++G+  C C+ + + + +   +C  I+     N CL F N+            +   Q +  GS D+ RK+ P ++ + K     S   P         NC  +YQ C +   CLQR++ + + C        C++   CL    +FY+  D  + ++  C C     +  C +   +F+P C  +      ++C+ L+++C  +  C
Sbjct:  206 GRGGSCLERRSRCFDNPTCAADARAFQDRCGFDDISKCPGQRAACLQSYEALRNHGLIPCTCLNYTRAERL---QCDRIRRVYPGNVCLRFFNDAYNIGLLHPKSSKDPQQQIGAGSPDDDRKS-PDSEAVVKSSVGASVIHPSAFQLIKSANCFEVYQSCVRHFDCLQRFIALAQACEWMSGAGSCRDRALCLGQLEAFYAYADRFANDAATCGCPADDSD--CQQMSDIFRPRCAYEPPSGTPVDCVQLVESCRASRGC 460          
BLAST of SMED30005820 vs. TrEMBL
Match: A0A267H9B6 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig031393g1 PE=4 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.585e-10
Identity = 68/274 (24.82%), Postives = 108/274 (39.42%), Query Frame = 3
Query:  339 GKNISCIEREKSCHLGQKCSTFWNSFKSFCQFHTCDKTGD------QCVVSYEQLRHYGMFDCVCVPFYQHQPMLMKKCLIIQTSLLDNQCLAFLNNRIMYQTLTFGSNDNSRKTD----------------PGTDNMPKQLQSLSK----------EIPNCLYLYQLCTQSSACLQRYMEIEKHC----SICQNYTACLEATRSFYSKPDTISLNSIRCQCNHSSFNDPCHRQQQMFQPFCIKKGQRP-IINCLILMQACLNNTSCL*TYGEY 1049
            G+   C+ R  +C     C     SF++ C   T D   D       C+ +YE LRH G+  C C+         ++ C  ++T    N CL + N+      +           D                PG+     Q                +  NC  +Y+ C +   CLQR+  + + C    + C NY+ CL    +FYS  D+ + ++  CQC HS   D C +Q + F+P C     RP   +C+ L + C N+ +CL  Y  +
Sbjct:  183 GRGGDCLGRRATCLESAACRGHAESFRANC-VPTADPARDCQLSRVACLAAYEGLRHSGLIPCTCLNRSDGAAERLQ-CDTVRTFYQGNACLRYFNDAYNNGLVPLRPRQELEGEDTEEPLAPPPPPPPSRAPGSRAPVPQPPPPLSPPLSPAYEPIKPANCFDVYRGCARHYNCLQRFTALREACEWRSNACVNYSFCLTQLEAFYSYADSFAKDAATCQC-HSDDTD-CLQQLEAFRPRCAYDVTRPGGRSCIQLYETCQNSHNCLAKYAHH 452          
BLAST of SMED30005820 vs. TrEMBL
Match: A0A059F592 (DDE_Tnp_IS1595 domain-containing protein OS=Anncaliia algerae PRA339 OX=1288291 GN=H312_00426 PE=4 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 2.146e-6
Identity = 31/73 (42.47%), Postives = 44/73 (60.27%), Query Frame = -2
Query: 1052 CHCEVQLKLCSYGWIGFEWRCLNHKWSHYQTSVLLRQGSFFENIAVSS*KI*KILFYWTSQLNQSEILRFRRI 1270
            C+  + LK       G EWRC+N++   YQT+  +R+GS+ EN  +S+  I KIL YW++ L Q  ILRF  I
Sbjct:   37 CNVVMCLKPTGNKIDGIEWRCMNYRCPKYQTTYSIRKGSWLENFKISAKTIYKILLYWSNGLIQKNILRFVDI 109          
BLAST of SMED30005820 vs. Planmine SMEST
Match: SMESG000080577.1 (SMESG000080577.1)

HSP 1 Score: 526.939 bits (1356), Expect = 0.000e+0
Identity = 254/260 (97.69%), Postives = 257/260 (98.85%), Query Frame = 3
Query:  270 DILIKNSLRVCLGSLGLFAETSFGKNISCIEREKSCHLGQKCSTFWNSFKSFCQFHTCDKTGDQCVVSYEQLRHYGMFDCVCVPFYQHQPMLMKKCLIIQTSLLDNQCLAFLNNRIMYQTLTFGSNDNSRKTDPGTDNMPKQLQSLSKEIPNCLYLYQLCTQSSACLQRYMEIEKHCSICQNYTACLEATRSFYSKPDTISLNSIRCQCNHSSFNDPCHRQQQMFQPFCIKKGQRPIINCLILMQACLNNTSCL*TYGEY 1049
            DILIKNSLRVCLGSLGLFAETSFGKNISCIEREKSCHLGQKCSTFWNSFKSFCQFHTCDKTGDQCVVSYEQLRHYGMFDCVCVPFYQHQPMLMKKCLIIQTSLLDNQCLAFLNNRIMYQTLTFGSNDNSRKTDPGTDNMPKQLQSLSKEIPNCLYLYQLCTQSSACLQRYMEIEKHCSICQNYTACLEATRSFYSKPDTISLNSIRCQCNHSSFNDPCHRQQQMFQPFCIKKGQRPIINCLILMQACLNNTSCL ++  +
Sbjct:  162 DILIKNSLRVCLGSLGLFAETSFGKNISCIEREKSCHLGQKCSTFWNSFKSFCQFHTCDKTGDQCVVSYEQLRHYGMFDCVCVPFYQHQPMLMKKCLIIQTSLLDNQCLAFLNNRIMYQTLTFGSNDNSRKTDPGTDNMPKQLQSLSKEIPNCLYLYQLCTQSSACLQRYMEIEKHCSICQNYTACLEATRSFYSKPDTISLNSIRCQCNHSSFNDPCHRQQQMFQPFCIKKGQRPIINCLILMQACLNNTSCLDSFTVF 421          

HSP 2 Score: 85.5001 bits (210), Expect = 1.265e-17
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 3
Query:  150 AQLTSKNCFQMYESCDISQNNCQLDIIIMKKMCGDFLIDDDIL 278
            AQLTSKNCFQMYESCDISQNNCQLDIIIMKKMCGDFLIDD + 
Sbjct:   15 AQLTSKNCFQMYESCDISQNNCQLDIIIMKKMCGDFLIDDTVF 57          
BLAST of SMED30005820 vs. Planmine SMEST
Match: SMESG000080577.1 (SMESG000080577.1)

HSP 1 Score: 526.168 bits (1354), Expect = 0.000e+0
Identity = 254/260 (97.69%), Postives = 257/260 (98.85%), Query Frame = 3
Query:  270 DILIKNSLRVCLGSLGLFAETSFGKNISCIEREKSCHLGQKCSTFWNSFKSFCQFHTCDKTGDQCVVSYEQLRHYGMFDCVCVPFYQHQPMLMKKCLIIQTSLLDNQCLAFLNNRIMYQTLTFGSNDNSRKTDPGTDNMPKQLQSLSKEIPNCLYLYQLCTQSSACLQRYMEIEKHCSICQNYTACLEATRSFYSKPDTISLNSIRCQCNHSSFNDPCHRQQQMFQPFCIKKGQRPIINCLILMQACLNNTSCL*TYGEY 1049
            DILIKNSLRVCLGSLGLFAETSFGKNISCIEREKSCHLGQKCSTFWNSFKSFCQFHTCDKTGDQCVVSYEQLRHYGMFDCVCVPFYQHQPMLMKKCLIIQTSLLDNQCLAFLNNRIMYQTLTFGSNDNSRKTDPGTDNMPKQLQSLSKEIPNCLYLYQLCTQSSACLQRYMEIEKHCSICQNYTACLEATRSFYSKPDTISLNSIRCQCNHSSFNDPCHRQQQMFQPFCIKKGQRPIINCLILMQACLNNTSCL ++  +
Sbjct:  138 DILIKNSLRVCLGSLGLFAETSFGKNISCIEREKSCHLGQKCSTFWNSFKSFCQFHTCDKTGDQCVVSYEQLRHYGMFDCVCVPFYQHQPMLMKKCLIIQTSLLDNQCLAFLNNRIMYQTLTFGSNDNSRKTDPGTDNMPKQLQSLSKEIPNCLYLYQLCTQSSACLQRYMEIEKHCSICQNYTACLEATRSFYSKPDTISLNSIRCQCNHSSFNDPCHRQQQMFQPFCIKKGQRPIINCLILMQACLNNTSCLDSFTVF 397          

HSP 2 Score: 66.6254 bits (161), Expect = 1.414e-11
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 3
Query:  180 MYESCDISQNNCQLDIIIMKKMCGDFLIDDDIL 278
            MYESCDISQNNCQLDIIIMKKMCGDFLIDD + 
Sbjct:    1 MYESCDISQNNCQLDIIIMKKMCGDFLIDDTVF 33          
BLAST of SMED30005820 vs. Planmine SMEST
Match: SMESG000080577.1 (SMESG000080577.1)

HSP 1 Score: 524.628 bits (1350), Expect = 0.000e+0
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 3
Query:  270 DILIKNSLRVCLGSLGLFAETSFGKNISCIEREKSCHLGQKCSTFWNSFKSFCQFHTCDKTGDQCVVSYEQLRHYGMFDCVCVPFYQHQPMLMKKCLIIQTSLLDNQCLAFLNNRIMYQTLTFGSNDNSRKTDPGTDNMPKQLQSLSKEIPNCLYLYQLCTQSSACLQRYMEIEKHCSICQNYTACLEATRSFYSKPDTISLNSIRCQCNHSSFNDPCHRQQQMFQPFCIKKGQRPIINCLILMQACLNNTSCL 1031
            DILIKNSLRVCLGSLGLFAETSFGKNISCIEREKSCHLGQKCSTFWNSFKSFCQFHTCDKTGDQCVVSYEQLRHYGMFDCVCVPFYQHQPMLMKKCLIIQTSLLDNQCLAFLNNRIMYQTLTFGSNDNSRKTDPGTDNMPKQLQSLSKEIPNCLYLYQLCTQSSACLQRYMEIEKHCSICQNYTACLEATRSFYSKPDTISLNSIRCQCNHSSFNDPCHRQQQMFQPFCIKKGQRPIINCLILMQACLNNTSCL
Sbjct:  162 DILIKNSLRVCLGSLGLFAETSFGKNISCIEREKSCHLGQKCSTFWNSFKSFCQFHTCDKTGDQCVVSYEQLRHYGMFDCVCVPFYQHQPMLMKKCLIIQTSLLDNQCLAFLNNRIMYQTLTFGSNDNSRKTDPGTDNMPKQLQSLSKEIPNCLYLYQLCTQSSACLQRYMEIEKHCSICQNYTACLEATRSFYSKPDTISLNSIRCQCNHSSFNDPCHRQQQMFQPFCIKKGQRPIINCLILMQACLNNTSCL 415          

HSP 2 Score: 85.1149 bits (209), Expect = 7.713e-18
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 3
Query:  150 AQLTSKNCFQMYESCDISQNNCQLDIIIMKKMCGDFLIDDDIL 278
            AQLTSKNCFQMYESCDISQNNCQLDIIIMKKMCGDFLIDD + 
Sbjct:   15 AQLTSKNCFQMYESCDISQNNCQLDIIIMKKMCGDFLIDDTVF 57          
BLAST of SMED30005820 vs. Planmine SMEST
Match: SMESG000080577.1 (SMESG000080577.1)

HSP 1 Score: 523.857 bits (1348), Expect = 0.000e+0
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 3
Query:  270 DILIKNSLRVCLGSLGLFAETSFGKNISCIEREKSCHLGQKCSTFWNSFKSFCQFHTCDKTGDQCVVSYEQLRHYGMFDCVCVPFYQHQPMLMKKCLIIQTSLLDNQCLAFLNNRIMYQTLTFGSNDNSRKTDPGTDNMPKQLQSLSKEIPNCLYLYQLCTQSSACLQRYMEIEKHCSICQNYTACLEATRSFYSKPDTISLNSIRCQCNHSSFNDPCHRQQQMFQPFCIKKGQRPIINCLILMQACLNNTSCL 1031
            DILIKNSLRVCLGSLGLFAETSFGKNISCIEREKSCHLGQKCSTFWNSFKSFCQFHTCDKTGDQCVVSYEQLRHYGMFDCVCVPFYQHQPMLMKKCLIIQTSLLDNQCLAFLNNRIMYQTLTFGSNDNSRKTDPGTDNMPKQLQSLSKEIPNCLYLYQLCTQSSACLQRYMEIEKHCSICQNYTACLEATRSFYSKPDTISLNSIRCQCNHSSFNDPCHRQQQMFQPFCIKKGQRPIINCLILMQACLNNTSCL
Sbjct:  138 DILIKNSLRVCLGSLGLFAETSFGKNISCIEREKSCHLGQKCSTFWNSFKSFCQFHTCDKTGDQCVVSYEQLRHYGMFDCVCVPFYQHQPMLMKKCLIIQTSLLDNQCLAFLNNRIMYQTLTFGSNDNSRKTDPGTDNMPKQLQSLSKEIPNCLYLYQLCTQSSACLQRYMEIEKHCSICQNYTACLEATRSFYSKPDTISLNSIRCQCNHSSFNDPCHRQQQMFQPFCIKKGQRPIINCLILMQACLNNTSCL 391          

HSP 2 Score: 66.6254 bits (161), Expect = 1.020e-11
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 3
Query:  180 MYESCDISQNNCQLDIIIMKKMCGDFLIDDDIL 278
            MYESCDISQNNCQLDIIIMKKMCGDFLIDD + 
Sbjct:    1 MYESCDISQNNCQLDIIIMKKMCGDFLIDDTVF 33          
BLAST of SMED30005820 vs. Planmine SMEST
Match: SMESG000080577.1 (SMESG000080577.1)

HSP 1 Score: 287.345 bits (734), Expect = 3.028e-92
Identity = 138/144 (95.83%), Postives = 141/144 (97.92%), Query Frame = 3
Query:  618 MYQTLTFGSNDNSRKTDPGTDNMPKQLQSLSKEIPNCLYLYQLCTQSSACLQRYMEIEKHCSICQNYTACLEATRSFYSKPDTISLNSIRCQCNHSSFNDPCHRQQQMFQPFCIKKGQRPIINCLILMQACLNNTSCL*TYGEY 1049
            MYQTLTFGSNDNSRKTDPGTDNMPKQLQSLSKEIPNCLYLYQLCTQSSACLQRYMEIEKHCSICQNYTACLEATRSFYSKPDTISLNSIRCQCNHSSFNDPCHRQQQMFQPFCIKKGQRPIINCLILMQACLNNTSCL ++  +
Sbjct:    1 MYQTLTFGSNDNSRKTDPGTDNMPKQLQSLSKEIPNCLYLYQLCTQSSACLQRYMEIEKHCSICQNYTACLEATRSFYSKPDTISLNSIRCQCNHSSFNDPCHRQQQMFQPFCIKKGQRPIINCLILMQACLNNTSCLDSFTVF 144          
The following BLAST results are available for this feature:
BLAST of SMED30005820 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005820 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005820 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005820 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005820 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005820 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005820 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005820 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1I8JC432.921e-1324.52Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A267FPV58.133e-1224.52Uncharacterized protein (Fragment) OS=Macrostomum ... [more]
A0A267ERK29.101e-1224.52Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A267H9B63.585e-1024.82Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A059F5922.146e-642.47DDE_Tnp_IS1595 domain-containing protein OS=Anncal... [more]
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BLAST of SMED30005820 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005820 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005820 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005820 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005820 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005820 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000080577.11.265e-1797.69SMESG000080577.1[more]
SMESG000080577.11.414e-1197.69SMESG000080577.1[more]
SMESG000080577.17.713e-18100.00SMESG000080577.1[more]
SMESG000080577.11.020e-11100.00SMESG000080577.1[more]
SMESG000080577.13.028e-9295.83SMESG000080577.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30005820 ID=SMED30005820|Name=SMED30005820|organism=Schmidtea mediterranea sexual|type=transcript|length=1271bp
TGAAAATGTTTTAAAATTAGAAATGATTGCATTTGATTAATTTGAATATC
CAAAATGAAAAAAAAACGATGTTAAATGATATTAAATTTTAAACTGAAAT
TATTACAATGATTGTTCGTGTAATTCTTATAATTATTTTTCATCAAATTG
CTCAACTGACTTCTAAAAATTGTTTTCAAATGTATGAAAGTTGTGATATT
TCCCAAAACAATTGTCAATTGGATATAATTATTATGAAAAAAATGTGTGG
CGATTTTCTTATAGACGATGACATTTTAATCAAAAATAGTTTACGAGTAT
GCCTTGGTAGTTTGGGTTTATTTGCAGAAACAAGTTTTGGAAAAAATATA
AGCTGTATTGAAAGGGAAAAATCATGCCATCTGGGTCAAAAATGCTCTAC
CTTTTGGAATAGTTTCAAGTCATTTTGTCAATTTCATACGTGTGATAAAA
CAGGTGACCAATGTGTAGTTTCCTATGAACAATTACGACATTATGGAATG
TTTGACTGTGTCTGTGTTCCATTCTATCAACATCAACCCATGTTAATGAA
AAAATGTCTTATCATTCAAACAAGTTTACTTGACAACCAATGCTTGGCAT
TCCTGAATAACAGAATTATGTATCAAACTCTAACATTTGGCTCTAATGAT
AATTCGAGAAAAACTGATCCCGGAACTGATAATATGCCAAAACAACTTCA
GTCTCTCAGTAAAGAAATTCCAAATTGTTTGTATTTATATCAACTTTGCA
CACAATCATCAGCGTGTTTACAACGATATATGGAGATCGAGAAACACTGC
AGTATTTGCCAAAATTATACAGCATGTCTTGAAGCAACTCGCTCATTTTA
TTCGAAACCAGATACTATAAGCCTCAATTCCATTAGGTGTCAATGCAATC
ACTCTTCCTTTAATGACCCTTGTCATCGTCAACAGCAAATGTTTCAGCCT
TTTTGTATTAAAAAAGGTCAACGCCCAATTATTAACTGTCTTATACTAAT
GCAAGCTTGCCTGAATAATACCTCGTGTTTATAAACTTACGGAGAATATT
GAATTCTGCGAAACCGGAGTATTTCTGATTGATTCAATTGACTTGTCCAA
TAAAACAATATTTTTCAAATTTTTTATGATGATACTGCTATATTTTCAAA
AAAGCTTCCTTGTCGAAGTAATACGCTTGTTTGATAATGACTCCATTTAT
GATTTAGACATCTCCATTCAAAACCAATCCAACCATAAGAACAAAGTTTT
AACTGCACTTCACAATGGCAC
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protein sequence of SMED30005820-orf-1

>SMED30005820-orf-1 ID=SMED30005820-orf-1|Name=SMED30005820-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=309bp
MIVRVILIIIFHQIAQLTSKNCFQMYESCDISQNNCQLDIIIMKKMCGDF
LIDDDILIKNSLRVCLGSLGLFAETSFGKNISCIEREKSCHLGQKCSTFW
NSFKSFCQFHTCDKTGDQCVVSYEQLRHYGMFDCVCVPFYQHQPMLMKKC
LIIQTSLLDNQCLAFLNNRIMYQTLTFGSNDNSRKTDPGTDNMPKQLQSL
SKEIPNCLYLYQLCTQSSACLQRYMEIEKHCSICQNYTACLEATRSFYSK
PDTISLNSIRCQCNHSSFNDPCHRQQQMFQPFCIKKGQRPIINCLILMQA
CLNNTSCL*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000026gut
PLANA:0000099neuron
PLANA:0000418head
PLANA:0002032epidermal cell
Vocabulary: INTERPRO
TermDefinition
IPR003438GDNF_rcpt
IPR037193GDNF_alpha
Vocabulary: molecular function
TermDefinition
GO:0038023signaling receptor activity
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003438Glial cell line-derived neurotrophic factor receptorPANTHERPTHR10269GDNF RECEPTOR ALPHAcoord: 70..307
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.599
IPR037193GDNF receptor alphaSUPERFAMILYSSF110035GDNF receptor-likecoord: 203..286