SMED30005771

Overview
NameSMED30005771
Smed IDSMED30005771
Length (bp)998
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30005771 (SMED30005771) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30005771 (SMED30005771) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30005771 (SMED30005771) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30005771 (SMED30005771) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30005771

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 3

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
pharynxSMED30005771SMESG000042003.1 dd_Smed_v4_12482_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30005771SMESG000042003.1 dd_Smed_v6_12482_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
epidermisSMED30005771SMESG000042003.1 dd_Smed_v4_12482_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30005771 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.000608:75472..87266 -4841
Homology
[Close]
BLAST of SMED30005771 vs. TrEMBL
Match: A0A1S3HM18 (uncharacterized protein LOC106155680 OS=Lingula unguis OX=7574 GN=LOC106155680 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.755e-9
Identity = 62/202 (30.69%), Postives = 94/202 (46.53%), Query Frame = 2 
Query:  332 GIITGLIIMSDYQRRTFADQYNKSYN-DISICYNEFPLYDRNVSISPWFVCP-WKDP-RYRYCCGDEIEERCCRYFDRPGHLAGLIIGVIILCALIYIVIKYCHVMVKHCRRSCSKVVYKHDSPKTAKLDNNPIIYTENLSNLPYPTYNDLSMEYQPEF---PPQYPVDPQNPGTDYVEQPMPTYVSDESNQHFPLLSPENP 919
            G + GL   S YQRR    +Y    + + + CYN    +  N S+   F+CP W  P    YCCG E+++ CC ++D  G +AG++IG++I   L+   I  C    +  R SC     K  +  T ++ + P       S++P          YQP+    PP YP++P    TD   QP+ +  S E +   P  SP  P
Sbjct:   55 GTVYGL---SRYQRRR---RYKMDPDREPTRCYNSARRFQENGSLFNEFICPEWDQPDELEYCCGPELQQYCCGFWDDGGRVAGVVIGILIAVTLVIGCIACCCCQARKRRASC-----KSTTTGTTEMTSYP-------SSVP---------TYQPQMAQPPPAYPLNP----TDETSQPLMS-SSGEKDASGPGFSPYPP 224
[Close]
BLAST of SMED30005771 vs. TrEMBL
Match: A0A1S3HKT4 (uncharacterized protein LOC106155682 OS=Lingula unguis OX=7574 GN=LOC106155682 PE=4 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 1.742e-8
Identity = 30/83 (36.14%), Postives = 45/83 (54.22%), Query Frame = 2 
Query:  422 CYNEFPLYDRNVSISPWFVCP-WKDP-RYRYCCGDEIEERCCRYFDRPGHLAGLIIGVIILCALIYIVIKYCHVMVKHCRRSC 664
            CYN    +  N S+   F+CP W  P    YCCG E+++ CC ++D  G +AG++IG++I   L+   I  C    +  R SC
Sbjct:   10 CYNSARRFQENGSLFNEFICPEWDQPDELEYCCGPELQQYCCGFWDDGGRVAGVVIGILIAVTLVIGCIACCCCQARKRRASC 92
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BLAST of SMED30005771 vs. TrEMBL
Match: V4CHQ0 (Uncharacterized protein OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_238206 PE=4 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 2.161e-8
Identity = 55/196 (28.06%), Postives = 89/196 (45.41%), Query Frame = 2 
Query:  416 SICYNEFPLYDRNVSISPWFVCP-WKDPR-YRYCCGDEIEERCCRYFDRPGHLAGLIIGVI----ILCALIYIVIK-YCHVMVKHCRRSCSKVVYKHDS----PKTAKLDNNP---IIYTENLSNLPY---PTYNDLSMEYQPEFPPQYPVDPQNPGTDYVEQPMPTYVSDESNQHFPLLSPEN--PPPSYSEIKN 946
            +IC N F   D N +   +F+CP   +P  + YCCGD+  E CC Y+++ G + G++ GV+    +L  L+Y  IK Y    V     S  +  Y + +      T   ++NP     +T ++S+ PY   P   D +  Y  +  P Y ++P    + +   P P   +      F    P +  PPP YS+  N
Sbjct:  108 TICTNNFDK-DSNGTTYGYFICPRAGEPEDHEYCCGDDKREHCCEYYNQTGRIVGIVFGVLCGVTVLSVLLYCCIKHYKKDKVDDKFNSIRQGSYNNGNTTTPASTGPYNSNPPTSTAFTTSVSDNPYDSKPISGDATPAYDSKSAPPYSLEPT---SAFTYSPTPAATAGTVPLGFEYSDPAHYTPPPPYSQAVN 299
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BLAST of SMED30005771 vs. TrEMBL
Match: K1P0G4 (Uncharacterized protein OS=Crassostrea gigas OX=29159 GN=CGI_10002070 PE=4 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.681e-7
Identity = 44/152 (28.95%), Postives = 78/152 (51.32%), Query Frame = 2 
Query:  419 ICYNEFPLYDRN----VSISPWFVCPWKD---PRYRYCCGDEIEERCCRYFDRPGHLAGLIIGVIILCALIYIVIKYCHVMVKHCRRSCSKVVYKHDSPKTAKLDNN-------PIIYT---------ENLSNLPYPTYNDLSMEYQPEFPP 805
            +CYN+   Y+R+    VS    F CP  +     YRYCCG+E ++ CC ++D+PGH+ G++ G+I     +++V+ +C  ++K+ + + S+    H+ P T+ + N        P  Y          ++    PYPT +D+     P +PP
Sbjct:  188 VCYND--SYNRSTNGTVSYQGRFFCPLDENMSEDYRYCCGEEGQQYCCTFWDKPGHIVGVVFGIIAGVVALFVVV-FC--VIKYMKTTKSR---NHNRPYTSNISNTSNGHASYPPAYAPPTYEMSCVDSNGKTPYPT-SDMMGYSNPSYPP 330
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BLAST of SMED30005771 vs. TrEMBL
Match: K1PDZ5 (Uncharacterized protein OS=Crassostrea gigas OX=29159 GN=CGI_10007565 PE=4 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 7.607e-6
Identity = 25/75 (33.33%), Postives = 43/75 (57.33%), Query Frame = 2 
Query:  446 DRNVSISPWFVCP---WKDPRYRYCCGDEIEERCCRYFDRPGHLAGLIIGVIILCALIYIVIKYCHVMVKHCRRS 661
            +  VS    F CP   +    YRYCCG+E ++ CC ++D+PGH+ G++ G+I     ++I + +C V     ++S
Sbjct:    4 NDTVSYQGRFFCPIDEYMSEDYRYCCGEEGQQNCCTFWDKPGHIVGVVFGIIAGMVALFIAV-FCVVKCIRTKKS 77
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BLAST of SMED30005771 vs. Planmine SMEST
Match: SMESG000042003.1 (SMESG000042003.1)

HSP 1 Score: 464.537 bits (1194), Expect = 5.417e-166
Identity = 293/298 (98.32%), Postives = 296/298 (99.33%), Query Frame = 2 
Query:   59 KASLIIGIIVITGFLVIISEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNKIKVSVRYXXXXXXXXXXXXXXXXXXXXXXXXTGIITGLIIMSDYQRRTFADQYNKSYNDISICYNEFPLYDRNVSISPWFVCPWKDPRYRYCCGDEIEERCCRYFDRPGHLAGLIIGVIILCALIYIVIKYCHVMVKHCRRSCSKVVYKHDSPKTAKLDNNPIIYTENLSNLPYPTYNDLSMEYQPEFPPQYPVDPQNPGTDYVEQPMPTYVSDESNQHFPLLSPENPPPSYSEIKNYE 952
            KASLIIGIIVITGFLVIISEEARSGGSRGGGSRSSRSGSSRSSSGFRSSVRSRGVSYNKIKVSVRYSSWSRSHGLSSSFRYRSSSYSYKRTGIITGLIIMSDYQRRTFADQYNKSYNDISICYNEFPLYDRNVSISPWFVCPWKDPRYRYCCGDEIEERCCRYFDRPGHLAGLIIGVIILCALIYI IKYCHVM+KHCRRSCSKVVYKHDSPK AKLDNNPIIYTEN+SNLPYPTYNDLSMEYQPEFPPQYPVDPQNPG+DYVEQPMPTYVSDESNQHFPLLSPENPPPSYSEIKNYE
Sbjct:    5 KASLIIGIIVITGFLVIISEEARSGGSRGGGSRSSRSGSSRSSSGFRSSVRSRGVSYNKIKVSVRYSSWSRSHGLSSSFRYRSSSYSYKRTGIITGLIIMSDYQRRTFADQYNKSYNDISICYNEFPLYDRNVSISPWFVCPWKDPRYRYCCGDEIEERCCRYFDRPGHLAGLIIGVIILCALIYIAIKYCHVMIKHCRRSCSKVVYKHDSPKNAKLDNNPIIYTENVSNLPYPTYNDLSMEYQPEFPPQYPVDPQNPGSDYVEQPMPTYVSDESNQHFPLLSPENPPPSYSEIKNYE 302
[Close]
BLAST of SMED30005771 vs. Planmine SMEST
Match: SMESG000042003.1 (SMESG000042003.1)

HSP 1 Score: 464.151 bits (1193), Expect = 7.935e-166
Identity = 293/298 (98.32%), Postives = 296/298 (99.33%), Query Frame = 2 
Query:   59 KASLIIGIIVITGFLVIISEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNKIKVSVRYXXXXXXXXXXXXXXXXXXXXXXXXTGIITGLIIMSDYQRRTFADQYNKSYNDISICYNEFPLYDRNVSISPWFVCPWKDPRYRYCCGDEIEERCCRYFDRPGHLAGLIIGVIILCALIYIVIKYCHVMVKHCRRSCSKVVYKHDSPKTAKLDNNPIIYTENLSNLPYPTYNDLSMEYQPEFPPQYPVDPQNPGTDYVEQPMPTYVSDESNQHFPLLSPENPPPSYSEIKNYE 952
            KASLIIGIIVITGFLVIISEEARSGGSRGGGSRSSRSGSSRSSSGFRSSVRSRGVSYNKIKVSVRYSSWSRSHGLSSSFRYRSSSYSYKRTGIITGLIIMSDYQRRTFADQYNKSYNDISICYNEFPLYDRNVSISPWFVCPWKDPRYRYCCGDEIEERCCRYFDRPGHLAGLIIGVIILCALIYI IKYCHVM+KHCRRSCSKVVYKHDSPK AKLDNNPIIYTEN+SNLPYPTYNDLSMEYQPEFPPQYPVDPQNPG+DYVEQPMPTYVSDESNQHFPLLSPENPPPSYSEIKNYE
Sbjct:    8 KASLIIGIIVITGFLVIISEEARSGGSRGGGSRSSRSGSSRSSSGFRSSVRSRGVSYNKIKVSVRYSSWSRSHGLSSSFRYRSSSYSYKRTGIITGLIIMSDYQRRTFADQYNKSYNDISICYNEFPLYDRNVSISPWFVCPWKDPRYRYCCGDEIEERCCRYFDRPGHLAGLIIGVIILCALIYIAIKYCHVMIKHCRRSCSKVVYKHDSPKNAKLDNNPIIYTENVSNLPYPTYNDLSMEYQPEFPPQYPVDPQNPGSDYVEQPMPTYVSDESNQHFPLLSPENPPPSYSEIKNYE 305
[Close]
BLAST of SMED30005771 vs. Planmine SMEST
Match: SMESG000042003.1 (SMESG000042003.1)

HSP 1 Score: 434.491 bits (1116), Expect = 3.133e-154
Identity = 282/298 (94.63%), Postives = 285/298 (95.64%), Query Frame = 2 
Query:   59 KASLIIGIIVITGFLVIISEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNKIKVSVRYXXXXXXXXXXXXXXXXXXXXXXXXTGIITGLIIMSDYQRRTFADQYNKSYNDISICYNEFPLYDRNVSISPWFVCPWKDPRYRYCCGDEIEERCCRYFDRPGHLAGLIIGVIILCALIYIVIKYCHVMVKHCRRSCSKVVYKHDSPKTAKLDNNPIIYTENLSNLPYPTYNDLSMEYQPEFPPQYPVDPQNPGTDYVEQPMPTYVSDESNQHFPLLSPENPPPSYSEIKNYE 952
            KASLIIGIIVITGFLVIISEEARSGGSRGGGSRSSRSGSSRSSSGFRSSVRSRGVSYNKIKVSVRYSSWSRSHGLSSSFRYRSSSYSYKRTGIITGLIIMSDYQRRTFADQYNKSYNDISICYNEFPLYDRNVSISPWFVCPWKDPRYRYCCGDEIEERCCRYFDRPGHLAGLIIGVIILCALIYI IKYCHVM+KHCRRSCSKVVYKHDSPK            EN+SNLPYPTYNDLSMEYQPEFPPQYPVDPQNPG+DYVEQPMPTYVSDESNQHFPLLSPENPPPSYSEIKNYE
Sbjct:    8 KASLIIGIIVITGFLVIISEEARSGGSRGGGSRSSRSGSSRSSSGFRSSVRSRGVSYNKIKVSVRYSSWSRSHGLSSSFRYRSSSYSYKRTGIITGLIIMSDYQRRTFADQYNKSYNDISICYNEFPLYDRNVSISPWFVCPWKDPRYRYCCGDEIEERCCRYFDRPGHLAGLIIGVIILCALIYIAIKYCHVMIKHCRRSCSKVVYKHDSPK-----------NENVSNLPYPTYNDLSMEYQPEFPPQYPVDPQNPGSDYVEQPMPTYVSDESNQHFPLLSPENPPPSYSEIKNYE 294
[Close]
BLAST of SMED30005771 vs. Planmine SMEST
Match: SMESG000042003.1 (SMESG000042003.1)

HSP 1 Score: 434.491 bits (1116), Expect = 3.390e-154
Identity = 282/298 (94.63%), Postives = 285/298 (95.64%), Query Frame = 2 
Query:   59 KASLIIGIIVITGFLVIISEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNKIKVSVRYXXXXXXXXXXXXXXXXXXXXXXXXTGIITGLIIMSDYQRRTFADQYNKSYNDISICYNEFPLYDRNVSISPWFVCPWKDPRYRYCCGDEIEERCCRYFDRPGHLAGLIIGVIILCALIYIVIKYCHVMVKHCRRSCSKVVYKHDSPKTAKLDNNPIIYTENLSNLPYPTYNDLSMEYQPEFPPQYPVDPQNPGTDYVEQPMPTYVSDESNQHFPLLSPENPPPSYSEIKNYE 952
            KASLIIGIIVITGFLVIISEEARSGGSRGGGSRSSRSGSSRSSSGFRSSVRSRGVSYNKIKVSVRYSSWSRSHGLSSSFRYRSSSYSYKRTGIITGLIIMSDYQRRTFADQYNKSYNDISICYNEFPLYDRNVSISPWFVCPWKDPRYRYCCGDEIEERCCRYFDRPGHLAGLIIGVIILCALIYI IKYCHVM+KHCRRSCSKVVYKHDSPK            EN+SNLPYPTYNDLSMEYQPEFPPQYPVDPQNPG+DYVEQPMPTYVSDESNQHFPLLSPENPPPSYSEIKNYE
Sbjct:    5 KASLIIGIIVITGFLVIISEEARSGGSRGGGSRSSRSGSSRSSSGFRSSVRSRGVSYNKIKVSVRYSSWSRSHGLSSSFRYRSSSYSYKRTGIITGLIIMSDYQRRTFADQYNKSYNDISICYNEFPLYDRNVSISPWFVCPWKDPRYRYCCGDEIEERCCRYFDRPGHLAGLIIGVIILCALIYIAIKYCHVMIKHCRRSCSKVVYKHDSPK-----------NENVSNLPYPTYNDLSMEYQPEFPPQYPVDPQNPGSDYVEQPMPTYVSDESNQHFPLLSPENPPPSYSEIKNYE 291
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BLAST of SMED30005771 vs. Planmine SMEST
Match: SMESG000042005.1 (SMESG000042005.1)

HSP 1 Score: 156.762 bits (395), Expect = 4.738e-45
Identity = 120/275 (43.64%), Postives = 157/275 (57.09%), Query Frame = 2 
Query:  230 NKIKVSVRYXXXXXXXXXXXXXXXXXXXXXXXXTGIITGLIIMSDYQRRTFADQYNKSYNDISICYNEFPLYDRNVSISPWFVCPWKDPRYRYCCGDEIEERCCRYFDRPGHLAGLIIGVIILCALIYIVIKYCHVMVKHCRRSCSKVVYKHDSPKTAKLD-NNPIIY-------TENLSNLPYPTYNDLS---MEYQPEFP-------------------------PQYPVDPQN--PGTDYVEQPMPTYVSDESNQHFPLLSPENPPPSYSEI 940
             KI  S RYS WSRSHG SSSFRYR+S+Y YKR GI +GLI++S   R T+    + S ++ISICYNE PLY RN+S SPWFVCPW DPR+RYCCG+EIEERCCRYFDRPGHL GL+IG +++   I++++  C    KH  +  + +   +  P    +D  N I+Y       T+  +  PYP   DL    +  QP+F                          P YP+ P +  P     +Q   +   DES   + L+ PENPPPSYS+I
Sbjct:   51 GKIGSSSRYSMWSRSHGFSSSFRYRTSTYYYKRNGINSGLILVSARYRGTYYYSSDTSLDEISICYNESPLYGRNISKSPWFVCPWDDPRFRYCCGNEIEERCCRYFDRPGHLTGLLIGGLVM-VFIFVLVCQCFCK-KHKHKEKADIALVNVDPDKIDIDYTNAIVYPPEPVLPTDGNACPPYPQSFDLDKLPLCGQPDFSQTGITPNQTENQIPYVPQNTDNNGNPPYPLSPMDSVPQPHSGQQQYNSLSYDESGPQYSLIPPENPPPSYSDI 323
The following BLAST results are available for this feature:
BLAST of SMED30005771 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005771 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005771 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005771 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005771 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005771 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005771 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005771 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1S3HM182.755e-930.69uncharacterized protein LOC106155680 OS=Lingula un... [more]
A0A1S3HKT41.742e-836.14uncharacterized protein LOC106155682 OS=Lingula un... [more]
V4CHQ02.161e-828.06Uncharacterized protein OS=Lottia gigantea OX=2251... [more]
K1P0G41.681e-728.95Uncharacterized protein OS=Crassostrea gigas OX=29... [more]
K1PDZ57.607e-633.33Uncharacterized protein OS=Crassostrea gigas OX=29... [more]
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BLAST of SMED30005771 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005771 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005771 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005771 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005771 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005771 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000042003.15.417e-16698.32SMESG000042003.1[more]
SMESG000042003.17.935e-16698.32SMESG000042003.1[more]
SMESG000042003.13.133e-15494.63SMESG000042003.1[more]
SMESG000042003.13.390e-15494.63SMESG000042003.1[more]
SMESG000042005.14.738e-4543.64SMESG000042005.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30005771 ID=SMED30005771|Name=SMED30005771|organism=Schmidtea mediterranea sexual|type=transcript|length=998bp
TTTGAAATTTCTAATTTTTTGAAATCTTTATAATAATATGCTATTAATGC
AGAATTTTAAAGCGAGTTTAATAATTGGAATAATTGTAATCACAGGTTTT
CTGGTTATTATTTCTGAAGAAGCTCGAAGCGGTGGCAGCAGAGGTGGTGG
TAGTCGTAGTAGCAGAAGTGGAAGTAGTCGTAGTAGCAGTGGTTTTAGAA
GTTCTGTTCGATCAAGAGGGGTTTCGTATAATAAAATTAAGGTATCTGTG
AGATACTCTTCTTGGTCTAGAAGCCACGGCTTATCTTCTTCGTTTCGATA
CAGAAGTTCTTCCTACAGTTATAAAAGAACTGGAATTATTACAGGTCTTA
TAATCATGTCTGATTATCAGAGGAGGACATTTGCTGATCAATATAATAAA
TCTTATAATGATATTTCTATCTGTTACAATGAATTTCCTCTGTATGACAG
AAACGTTTCAATCTCACCATGGTTTGTATGTCCTTGGAAAGATCCTAGAT
ATCGTTATTGTTGTGGAGACGAAATAGAAGAACGATGTTGCAGATATTTT
GATAGGCCAGGTCATTTAGCTGGATTGATCATTGGAGTTATTATTTTGTG
TGCTCTTATTTACATCGTCATAAAGTACTGCCATGTAATGGTTAAGCACT
GCAGGCGTTCCTGTTCAAAGGTAGTTTATAAACATGATAGTCCGAAAACT
GCTAAACTCGATAATAACCCTATAATATATACAGAAAATTTATCAAATTT
GCCATATCCTACATACAATGACCTATCAATGGAGTATCAACCAGAATTTC
CTCCCCAATACCCCGTGGATCCTCAAAACCCAGGTACGGATTATGTGGAA
CAGCCGATGCCTACATATGTTTCAGATGAGTCTAATCAACATTTTCCACT
TTTATCACCAGAAAATCCTCCTCCGTCTTATTCTGAAATCAAGAATTATG
AATAATACCTTACTTTCTAAAACTAGAGTTTATTAGATCTTATTTCTT
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protein sequence of SMED30005771-orf-1

>SMED30005771-orf-1 ID=SMED30005771-orf-1|Name=SMED30005771-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=306bp
MLLMQNFKASLIIGIIVITGFLVIISEEARSGGSRGGGSRSSRSGSSRSS
SGFRSSVRSRGVSYNKIKVSVRYSSWSRSHGLSSSFRYRSSSYSYKRTGI
ITGLIIMSDYQRRTFADQYNKSYNDISICYNEFPLYDRNVSISPWFVCPW
KDPRYRYCCGDEIEERCCRYFDRPGHLAGLIIGVIILCALIYIVIKYCHV
MVKHCRRSCSKVVYKHDSPKTAKLDNNPIIYTENLSNLPYPTYNDLSMEY
QPEFPPQYPVDPQNPGTDYVEQPMPTYVSDESNQHFPLLSPENPPPSYSE
IKNYE*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000034epidermis
PLANA:0000418head
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 281..305
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..54
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..54
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 257..276
NoneNo IPR availableTMHMMTMhelixcoord: 7..26
NoneNo IPR availableTMHMMTMhelixcoord: 178..200