General transcription factor II-I repeat domain-containing protein 2A

Overview
NameGeneral transcription factor II-I repeat domain-containing protein 2A
Smed IDSMED30005442
Length (bp)1112
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of General transcription factor II-I repeat domain-containing protein 2A (SMED30005442) t-SNE clustered cells

Violin plots show distribution of expression levels for General transcription factor II-I repeat domain-containing protein 2A (SMED30005442) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of General transcription factor II-I repeat domain-containing protein 2A (SMED30005442) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for General transcription factor II-I repeat domain-containing protein 2A (SMED30005442) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30005442

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
pharynxSMED30005442 dd_Smed_v4_14922_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30005442 dd_Smed_v4_14922_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30005442 dd_Smed_v4_14922_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30005442 dd_Smed_v4_14922_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Human
Match: GTF2IRD2B (GTF2I repeat domain containing 2B [Source:HGNC Symbol;Acc:HGNC:33125])

HSP 1 Score: 83.5741 bits (205), Expect = 9.972e-17
Identity = 53/167 (31.74%), Postives = 87/167 (52.10%), Query Frame = 2 
Query:  605 LLSFYCVIHDENLCT-KASAKH*XXXXXXXXXXXXX--XXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIKLISK 1096
            L S  C+IH E+LC  K    H + + V  +  + S  L H +      +++S+Y  LL + E +WLSRG VL  F   ++ I   +    +  PQL    W+  L FL D+T H N LN+ LQ +   + ++++    F  KL L+E+ +  +   +FP +KL+S+
Sbjct:  815 LKSICCIIHPESLCAQKLKMDHVMDVVVKSVNWICSRGLNHSEFTTLLYELDSQYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSIDWIRDLAFLVDMTMHLNALNISLQGHSQIVTQMYDLIRAFLAKLCLWETHLTRNNLAHFPTLKLVSR 981
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Human
Match: GTF2IRD2 (GTF2I repeat domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30775])

HSP 1 Score: 82.0333 bits (201), Expect = 3.587e-16
Identity = 53/167 (31.74%), Postives = 86/167 (51.50%), Query Frame = 2 
Query:  605 LLSFYCVIHDENLCT-KASAKH*XXXXXXXXXXXXX--XXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIKLISK 1096
            L S  C+IH E+LC  K    H + + V  +  + S  L H +      +++S+Y  LL + E +WLSRG VL  F   ++ I   +    +  PQL    W+  L FL D+T H N LN+ LQ +   + ++++    F  KL L+E+ +  +   +FP +KL S+
Sbjct:  810 LKSICCIIHPESLCAQKLKMDHVMDVVVKSVNWICSRGLNHSEFTTLLYELDSQYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSIDWIRDLAFLVDMTMHLNALNISLQGHSQIVTQMYDLIRAFLAKLCLWETHLTRNNLAHFPTLKLASR 976
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Human
Match: GTF2IRD2B (GTF2I repeat domain containing 2B [Source:HGNC Symbol;Acc:HGNC:33125])

HSP 1 Score: 79.7221 bits (195), Expect = 1.550e-15
Identity = 52/167 (31.14%), Postives = 85/167 (50.90%), Query Frame = 2 
Query:  605 LLSFYCVIHDENLCT-KASAKH*XXXXXXXX--XXXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIKLISK 1096
            L S  C+IH E+LC  K    H + + V  +       L H +      +++S+Y  LL + E +WLSRG VL  F   ++ I   +    +  PQL    W+  L FL D+T H N LN+ LQ +   + ++++    F  KL L+E+ +  +   +FP +KL+S+
Sbjct:  648 LKSICCIIHPESLCAQKLKMDHVMDVVVKSVNWICSRGLNHSEFTTLLYELDSQYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSIDWIRDLAFLVDMTMHLNALNISLQGHSQIVTQMYDLIRAFLAKLCLWETHLTRNNLAHFPTLKLVSR 814
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Human
Match: GTF2IRD2 (GTF2I repeat domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30775])

HSP 1 Score: 78.1814 bits (191), Expect = 5.216e-15
Identity = 52/167 (31.14%), Postives = 84/167 (50.30%), Query Frame = 2 
Query:  605 LLSFYCVIHDENLCT-KASAKH*XXXXXXXX--XXXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIKLISK 1096
            L S  C+IH E+LC  K    H + + V  +       L H +      +++S+Y  LL + E +WLSRG VL  F   ++ I   +    +  PQL    W+  L FL D+T H N LN+ LQ +   + ++++    F  KL L+E+ +  +   +FP +KL S+
Sbjct:  648 LKSICCIIHPESLCAQKLKMDHVMDVVVKSVNWICSRGLNHSEFTTLLYELDSQYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSIDWIRDLAFLVDMTMHLNALNISLQGHSQIVTQMYDLIRAFLAKLCLWETHLTRNNLAHFPTLKLASR 814
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Human
Match: ZMYM6 (zinc finger MYM-type containing 6 [Source:HGNC Symbol;Acc:HGNC:13050])

HSP 1 Score: 65.0846 bits (157), Expect = 1.111e-10
Identity = 39/120 (32.50%), Postives = 60/120 (50.00%), Query Frame = 2 
Query:  719 RQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQ-LEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFP 1075
            R +     ++ SE+  L LHAE RW+SRG +L     L   I+I L +      +   D+ W+  L +L+DI +  NELNL LQ    T   L  + + F  KL+++    Q + +  FP
Sbjct: 1048 RMLTILCEEMGSEHVSLPLHAEVRWISRGRMLKRLFELRHEIEIFLSQKHSDLAKYFHDEEWVGKLAYLSDIFSLINELNLSLQGTLTTFFNLCNKIDVFKRKLKMWLKRTQENDYDMFP 1167
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Zebrafish
Match: CR392001.3 (pep chromosome:GRCz11:8:38963323:38965260:-1 gene:ENSDARG00000117159.1 transcript:ENSDART00000181495.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CR392001.3)

HSP 1 Score: 122.094 bits (305), Expect = 2.893e-30
Identity = 67/182 (36.81%), Postives = 105/182 (57.69%), Query Frame = 2 
Query:  554 GKDSGFVKLLEKWLERPLLSFYCVIHDENLCTKASAKH*XXXX-----XXXXXXXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIK 1084
            G   GFV LL+K L+R LL+F+C++H E LC +      + +      +    +  +L HRQ +   ++++SEY DLLLH + RWLS+  VL  FV+ ++ ++  L   +  +PQLED  WL  L F+ D+T+H N+LN  LQ   +T L++ E    F  KL +F  D+Q  T  +FP ++
Sbjct:  257 GSKRGFVTLLQKALDRNLLAFHCILHQEALCAQTFPSECMVVMNLVIEMVNKIIAKALNHRQFRALLDEVDSEYSDLLLHNKVRWLSKDEVLRRFVACLEHVKTFLKSKDLIYPQLEDTEWLEKLHFMVDMTSHLNKLNESLQVRGNTALQMLEAVLSFERKLTVFARDVQRGTLSHFPSLR 438

HSP 2 Score: 29.6462 bits (65), Expect = 2.893e-30
Identity = 15/35 (42.86%), Postives = 21/35 (60.00%), Query Frame = 1 
Query:  379 FINSPQIHEELCELEPLTGTTRGVDIFE*LIAFTN 483
            ++NS    EE+ +L PL G TRG DI E ++   N
Sbjct:  201 YVNSDGPQEEIIKLIPLKGQTRGEDICEAVLKCLN 235
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Zebrafish
Match: AL928808.1 (pep chromosome:GRCz11:20:17257101:17259573:-1 gene:ENSDARG00000101333.2 transcript:ENSDART00000166397.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AL928808.1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.223e-19
Identity = 56/182 (30.77%), Postives = 100/182 (54.95%), Query Frame = 2 
Query:  551 VGKDSGFVKLLEKWLERPLL-SFYCVIHDEN-LCTKASAKH*XXXXXXXX--XXXXXXXHRQVKDFSNDIESEY-CDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMI 1081
            +G + G V L +     P   +F+C+IH E+ +  K +  H +K  +  +      +L HRQ K+  ++++ +   DLL H   RWLSRG+VL+ F  L++ +++ L E  +++P+L D  W+  L FL D+ ++ N LN+ LQ     +  L +    F  KL+LF++ +Q   + +FP +
Sbjct:  263 LGSERGLVGLCKADDRFPAFWTFHCIIHQEHWVSKKLNLDHIMKPVLEIVNFVRTHALNHRQFKNLIDELDEDLPSDLLFHCAVRWLSRGHVLSRFFELLNPVKLFLAEKHKEYPELHDPQWISDLAFLVDVLHYLNGLNVDLQGKLKMLPDLVQSVFAFVNKLKLFKTHLQKRDYTHFPTL 444

HSP 2 Score: 27.335 bits (59), Expect = 2.223e-19
Identity = 13/32 (40.62%), Postives = 18/32 (56.25%), Query Frame = 1 
Query:  397 IHEELCELEPLTGTTRGVDIFE*LIAFTNFKN 492
            I EEL ++ PL   TRG+D+ E L+      N
Sbjct:  214 IREELLDIVPLKDRTRGIDLKETLMTVVEKAN 245

HSP 3 Score: 23.0978 bits (48), Expect = 2.223e-19
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3 
Query:  522 SIITDGEPATLGKIVGL 572
            +I+TDG PA LG   GL
Sbjct:  253 AIVTDGAPAMLGSERGL 269
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Xenopus
Match: spag1 (sperm associated antigen 1 [Source:Xenbase;Acc:XB-GENE-853609])

HSP 1 Score: 71.2478 bits (173), Expect = 1.882e-14
Identity = 57/173 (32.95%), Postives = 84/173 (48.55%), Query Frame = 2 
Query:  551 VGKDSGFVKLLEK-WLERPLLSFYCVIHDENLCTKASAKH*XXXXXXXXX-----XXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEK---FPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFES 1042
            VG++ G    L K  ++  +  F+C++H E LC  +     +   V  +         SL HR+ K+F  ++++ Y DLLLH   RWLS G  L  F +L   I + L +I+        L D  +L  L FLTDIT   N LNL+LQ     + +L+     F  KL L +S
Sbjct:  265 VGRNQGLAGRLRKEGIDCHM--FHCIVHQEVLCGTSLKMADIMDVVTKVTNLIRGGNRSLTHRRFKNFLEELDAAYGDLLLHTNVRWLSAGKCLVRFFALRKEIHLYLSDIKCDSYLLEHLTDVSFLTALAFLTDITQFLNSLNLNLQGRDQNVSQLYSHIAAFRNKLHLLKS 435

HSP 2 Score: 27.7202 bits (60), Expect = 1.882e-14
Identity = 12/22 (54.55%), Postives = 16/22 (72.73%), Query Frame = 1 
Query:  394 QIHEELCELEPLTGTTRGVDIF 459
             I EEL E+ PL G+T+G DI+
Sbjct:  216 HISEELLEIVPLHGSTKGEDIY 237
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Xenopus
Match: ENSXETT00000016563.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:4:37379994:37381838:-1 gene:ENSXETG00000009412.1 transcript:ENSXETT00000016563.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 71.2478 bits (173), Expect = 1.975e-14
Identity = 57/173 (32.95%), Postives = 84/173 (48.55%), Query Frame = 2 
Query:  551 VGKDSGFVKLLEK-WLERPLLSFYCVIHDENLCTKASAKH*XXXXXXXXX-----XXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEK---FPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFES 1042
            VG++ G    L K  ++  +  F+C++H E LC  +     +   V  +         SL HR+ K+F  ++++ Y DLLLH   RWLS G  L  F +L   I + L +I+        L D  +L  L FLTDIT   N LNL+LQ     + +L+     F  KL L +S
Sbjct:  265 VGRNQGLAGRLRKEGIDCHM--FHCIVHQEVLCGTSLKMADIMDVVTKVTNLIRGGNRSLTHRRFKNFLEELDAAYGDLLLHTNVRWLSAGKCLVRFFALRKEIHLYLSDIKCDSYLLEHLTDVSFLTALAFLTDITQFLNSLNLNLQGRDQNVSQLYSHIAAFRNKLHLLKS 435

HSP 2 Score: 27.7202 bits (60), Expect = 1.975e-14
Identity = 12/22 (54.55%), Postives = 16/22 (72.73%), Query Frame = 1 
Query:  394 QIHEELCELEPLTGTTRGVDIF 459
             I EEL E+ PL G+T+G DI+
Sbjct:  216 HISEELLEIVPLHGSTKGEDIY 237
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Mouse
Match: Gtf2ird2 (GTF2I repeat domain containing 2 [Source:MGI Symbol;Acc:MGI:2149780])

HSP 1 Score: 75.0998 bits (183), Expect = 4.266e-14
Identity = 48/167 (28.74%), Postives = 79/167 (47.31%), Query Frame = 2 
Query:  605 LLSFYCVIHDENLCTKASAKH*XXXXXXXXXXXXXXXHRQVKDFSN---DIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIKLISK 1096
            L S  C+IH E LC +      +   V      I        DF+    +++S+Y  LL H   +WL RG VL  F   ++ I   +    +  PQL  + W+  L FL D+T H N L+  LQ +   + ++++    F  KL L+E+ +  +   +FP +K +S+
Sbjct:  642 LKSVRCIIHPEWLCAQKLRMGHVMDVVVDSVNWICSRGLNHGDFTTLLYELDSQYGSLLYHTALKWLGRGLVLRRFFESLEEIDSFMSSRGKPVPQLSSRDWILDLAFLVDMTTHLNTLDASLQGHSQIVTQMYDFIRAFLAKLCLWETHLARNNLAHFPTLKSVSR 808
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Mouse
Match: Zmym6 (zinc finger, MYM-type 6 [Source:MGI Symbol;Acc:MGI:106505])

HSP 1 Score: 62.003 bits (149), Expect = 7.498e-10
Identity = 39/124 (31.45%), Postives = 65/124 (52.42%), Query Frame = 2 
Query:  743 DIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQ-LEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIKLISKELDNA 1111
            ++ SE+ +L L+AE RWLSRG +L     L   I+I L +      +   D+ W+  L +L DI +  N+LN  LQ    T   L+ + + F  +L+++    Q + +  FP   L S+ LD++
Sbjct:  888 EMGSEHVNLPLNAEVRWLSRGRILTRLFELRHEIEIFLNQKHSDLARYFHDEEWIAKLAYLADIFSLINKLNSSLQGTMTTFFNLYNKVDVFQKRLKMWLKRAQENDYGMFP---LFSEFLDSS 1008
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Mouse
Match: Zmym6 (zinc finger, MYM-type 6 [Source:MGI Symbol;Acc:MGI:106505])

HSP 1 Score: 62.003 bits (149), Expect = 7.621e-10
Identity = 39/124 (31.45%), Postives = 65/124 (52.42%), Query Frame = 2 
Query:  743 DIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQ-LEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIKLISKELDNA 1111
            ++ SE+ +L L+AE RWLSRG +L     L   I+I L +      +   D+ W+  L +L DI +  N+LN  LQ    T   L+ + + F  +L+++    Q + +  FP   L S+ LD++
Sbjct:  980 EMGSEHVNLPLNAEVRWLSRGRILTRLFELRHEIEIFLNQKHSDLARYFHDEEWIAKLAYLADIFSLINKLNSSLQGTMTTFFNLYNKVDVFQKRLKMWLKRAQENDYGMFP---LFSEFLDSS 1100
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Mouse
Match: Zbed5 (zinc finger, BED type containing 5 [Source:MGI Symbol;Acc:MGI:1919220])

HSP 1 Score: 57.3806 bits (137), Expect = 1.764e-8
Identity = 44/129 (34.11%), Postives = 60/129 (46.51%), Query Frame = 2 
Query:  734 FSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAI-----QIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIKLISKELD 1105
              +D++     LLLH E RWLSRG VL     L D +     Q  + + E  F    D   L  + +L DI    NELNL LQ    T L L E+ + F  KLQL++  +  + F   P +    +E D
Sbjct:  476 LCSDLDEPSKTLLLHTEGRWLSRGKVLKRIFELRDELKMFFNQKAIRQFEALF---SDNSALQKVAYLVDIFTILNELNLSLQGPNSTCLDLSEKIHSFQMKLQLWQKKLDENKFYMLPTLSAFFEEHD 601
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. UniProt/SwissProt
Match: sp|Q6EKJ0|GTD2B_HUMAN (General transcription factor II-I repeat domain-containing protein 2B OS=Homo sapiens OX=9606 GN=GTF2IRD2B PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.446e-15
Identity = 52/167 (31.14%), Postives = 85/167 (50.90%), Query Frame = 2 
Query:  605 LLSFYCVIHDENLCT-KASAKH*XXXXXXXX--XXXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIKLISK 1096
            L S  C+IH E+LC  K    H + + V  +       L H +      +++S+Y  LL + E +WLSRG VL  F   ++ I   +    +  PQL    W+  L FL D+T H N LN+ LQ +   + ++++    F  KL L+E+ +  +   +FP +KL+S+
Sbjct:  648 LKSICCIIHPESLCAQKLKMDHVMDVVVKSVNWICSRGLNHSEFTTLLYELDSQYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSIDWIRDLAFLVDMTMHLNALNISLQGHSQIVTQMYDLIRAFLAKLCLWETHLTRNNLAHFPTLKLVSR 814
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. UniProt/SwissProt
Match: sp|Q86UP8|GTD2A_HUMAN (General transcription factor II-I repeat domain-containing protein 2A OS=Homo sapiens OX=9606 GN=GTF2IRD2 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 2.505e-14
Identity = 52/167 (31.14%), Postives = 84/167 (50.30%), Query Frame = 2 
Query:  605 LLSFYCVIHDENLCT-KASAKH*XXXXXXXX--XXXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIKLISK 1096
            L S  C+IH E+LC  K    H + + V  +       L H +      +++S+Y  LL + E +WLSRG VL  F   ++ I   +    +  PQL    W+  L FL D+T H N LN+ LQ +   + ++++    F  KL L+E+ +  +   +FP +KL S+
Sbjct:  648 LKSICCIIHPESLCAQKLKMDHVMDVVVKSVNWICSRGLNHSEFTTLLYELDSQYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSIDWIRDLAFLVDMTMHLNALNISLQGHSQIVTQMYDLIRAFLAKLCLWETHLTRNNLAHFPTLKLASR 814
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. UniProt/SwissProt
Match: sp|A4IFA3|GT2D2_BOVIN (General transcription factor II-I repeat domain-containing protein 2 OS=Bos taurus OX=9913 GN=GTF2IRD2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.615e-14
Identity = 50/167 (29.94%), Postives = 84/167 (50.30%), Query Frame = 2 
Query:  605 LLSFYCVIHDENLCT-KASAKH*XXXXXXXX--XXXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIKLISK 1096
            L S  C+IH E+LC  K    H + + V  +       L H +      +++ +Y  LL + E +WLSRG VL  F   ++ I   +    +  PQL  + W+  L FL D+T H N LN+ LQ +   + ++++    F  KL L+E+ +  +   +FP +K +S+
Sbjct:  649 LKSVCCIIHPESLCAQKLKMDHIMSVVVNAVNWICSRGLNHSEFTTLLYELDCQYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSQDWIKDLAFLVDMTMHLNTLNISLQGHSQIVTQMYDLIRAFLAKLCLWETHLARNNLAHFPTLKSVSR 815
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. UniProt/SwissProt
Match: sp|Q99NI3|GT2D2_MOUSE (General transcription factor II-I repeat domain-containing protein 2 OS=Mus musculus OX=10090 GN=Gtf2ird2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.984e-13
Identity = 48/167 (28.74%), Postives = 79/167 (47.31%), Query Frame = 2 
Query:  605 LLSFYCVIHDENLCTKASAKH*XXXXXXXXXXXXXXXHRQVKDFSN---DIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIKLISK 1096
            L S  C+IH E LC +      +   V      I        DF+    +++S+Y  LL H   +WL RG VL  F   ++ I   +    +  PQL  + W+  L FL D+T H N L+  LQ +   + ++++    F  KL L+E+ +  +   +FP +K +S+
Sbjct:  642 LKSVRCIIHPEWLCAQKLRMGHVMDVVVDSVNWICSRGLNHGDFTTLLYELDSQYGSLLYHTALKWLGRGLVLRRFFESLEEIDSFMSSRGKPVPQLSSRDWILDLAFLVDMTTHLNTLDASLQGHSQIVTQMYDFIRAFLAKLCLWETHLARNNLAHFPTLKSVSR 808
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. UniProt/SwissProt
Match: sp|O95789|ZMYM6_HUMAN (Zinc finger MYM-type protein 6 OS=Homo sapiens OX=9606 GN=ZMYM6 PE=1 SV=2)

HSP 1 Score: 65.0846 bits (157), Expect = 5.337e-10
Identity = 39/120 (32.50%), Postives = 60/120 (50.00%), Query Frame = 2 
Query:  719 RQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQ-LEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFP 1075
            R +     ++ SE+  L LHAE RW+SRG +L     L   I+I L +      +   D+ W+  L +L+DI +  NELNL LQ    T   L  + + F  KL+++    Q + +  FP
Sbjct: 1048 RMLTILCEEMGSEHVSLPLHAEVRWISRGRMLKRLFELRHEIEIFLSQKHSDLAKYFHDEEWVGKLAYLSDIFSLINELNLSLQGTLTTFFNLCNKIDVFKRKLKMWLKRTQENDYDMFP 1167
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. TrEMBL
Match: A0A087TCS8 (General transcription factor II-I repeat domain-containing protein 2A (Fragment) OS=Stegodyphus mimosarum OX=407821 GN=X975_02296 PE=4 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 6.504e-45
Identity = 95/183 (51.91%), Postives = 118/183 (64.48%), Query Frame = 2 
Query:  554 GKDSGFVKLLEKWLERPLLSFYCVIHDENLCTKASAKH*XXXXXXXXX------XXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIK 1084
            GK  GFVKL+E  L R LLSF+C+IH+ENL  KASA+    +    +K         +LIHR+ K F  +IES+Y DLLLH+E RWL RG VLN FV   D IQI L EI E   +L DK W   L FLTDI NH+N+  + LQ N  TILK++EEW  F  KL LFE+DI+T  F +FP++K
Sbjct:  103 GKTVGFVKLMENELGRSLLSFHCIIHEENLFAKASAQQRKNVMENVVKIVNMIIARSALIHRRFKAFLEEIESKYGDLLLHSEIRWL-RGKVLNRFVECFDDIQIFLHEIGENDLELNDKQWFLRLLFLTDIMNHYNDFKVRLQGNNRTILKIYEEWKSFTSKLILFETDIKTKKFHFFPLLK 284

HSP 2 Score: 48.1358 bits (113), Expect = 6.504e-45
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:  373 YGFINSPQIHEELCELEPLTGTTRGVDIFE*LIAFTNFKNGKSVDLK 513
            +  INS  ++EELC L  +  TT+G DIF  +  F NFKNG+ +DLK
Sbjct:   41 FASINSSNVNEELCVLASVNDTTKGTDIFPQVQDFGNFKNGQVLDLK 87
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. TrEMBL
Match: A0A3B1K4F4 (Uncharacterized protein OS=Astyanax mexicanus OX=7994 PE=4 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.629e-36
Identity = 79/182 (43.41%), Postives = 104/182 (57.14%), Query Frame = 2 
Query:  545 SNVGKDSGFVKLLEKWLERPLLSFYCVIHDENLCTKASAKH*XXXXXXXX------XXXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYF 1072
            S VGK  G VKL+E+ +  P++  +C+IH ENLC K S      +               +L HRQ +    +++SEY DL LH   RWLS G VL  FVS IDAI++ L E  +++PQLED+  +    FL DIT   NELNL LQ    T+L +FE W  F  KL +F  DI +STF+YF
Sbjct:   92 SMVGKQKGAVKLIEEKVGHPVMKLHCIIHQENLCAKMSNSDFNDVMATVAKVINFLVKRSALTHRQFRSLLEEMDSEYADLPLHLAVRWLSCGKVLERFVSCIDAIKVFLAEKGQQYPQLEDENCIVKHFFLADITGQLNELNLRLQGAGQTVLDMFETWTAFVTKLAVFSGDIASSTFRYF 273
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. TrEMBL
Match: H2YQ58 (Dimer_Tnp_hAT domain-containing protein OS=Ciona savignyi OX=51511 PE=4 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.678e-33
Identity = 76/187 (40.64%), Postives = 103/187 (55.08%), Query Frame = 2 
Query:  551 VGKDSGFVKLLEKWLERPLLSFYCVIHDENLCTKASAKH*XXXXXXXXX------XXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIKLIS 1093
            VG   GFV L E+ +  P++  +C+IH ENLC K S      +     K         +  HRQ +    ++ S Y D+ LH   RW SRG VL  FV  +  I++ L   ++ +P+LED  WL  L FL DIT H NELNL LQ +  T++ LFEEW GF  KL ++  DIQT++F YF  +K  S
Sbjct:  204 VGIHRGFVTLAEQMIGHPVMKLHCIIHQENLCAKISDSELNDVMSTVTKIVNFLVARSAKTHRQFRSLLEEMGSAYRDVPLHCSVRWFSRGKVLWRFVKCLVEIKVFLATQKQTYPELEDDKWLAKLMFLVDITAHLNELNLRLQGSGQTVICLFEEWKGFISKLDVYTQDIQTASFLYFKHLKAFS 390
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. TrEMBL
Match: J9K756 (DUF4371 domain-containing protein OS=Acyrthosiphon pisum OX=7029 PE=4 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.568e-30
Identity = 73/183 (39.89%), Postives = 108/183 (59.02%), Query Frame = 2 
Query:  551 VGKDSGFVKLLEKWLERPLLSFYCVIHDENLCTKASAKH*XXXXXXXXX-----XXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIK 1084
            VGK +GFV+L  K +  PL+SF+C+IH E LC K S K    +     K        +L +RQ     +++ES+Y  LL++   RWLSRG VL+ FV L++ I++ L E  + +P+L+D  WL  L F TD T  +NELN  LQ   H +L +FE   GF  K++++  D++   F+YFP +K
Sbjct:  259 VGKHNGFVQLFSKEISHPLISFHCLIHQEALCAKDSLKSLQNVMEVVTKVVNFITSRALNNRQFTKLLDEVESQYAGLLMYNSVRWLSRGQVLHRFVELLEEIRLFLFEKSQDYPELKDLNWLNDLMFFTDFTTMYNELNKKLQGPGHIVLTMFENIKGFEKKIEIYCKDLKNEKFKYFPHLK 441
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. TrEMBL
Match: A0A3B1J491 (Uncharacterized protein OS=Astyanax mexicanus OX=7994 PE=4 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.880e-28
Identity = 58/110 (52.73%), Postives = 75/110 (68.18%), Query Frame = 2 
Query:  743 DIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYF 1072
            +++SEY DL LH+  RWLS G VL  FVS IDAI++ L E  +++PQLED+ W+  L FL DIT H NELNL LQ    T++ +FE W  F  KL +F  DI +STF+YF
Sbjct:  199 EMDSEYADLPLHSAVRWLSCGKVLERFVSCIDAIKVFLAEKGQQYPQLEDEKWIVKLFFLADITGHLNELNLRLQGAGQTVMDMFETWTAFVAKLAVFSGDIASSTFRYF 308
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Cavefish
Match: ENSAMXT00000031692.1 (pep primary_assembly:Astyanax_mexicanus-2.0:7:21501471:21504188:-1 gene:ENSAMXG00000043766.1 transcript:ENSAMXT00000031692.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 146.747 bits (369), Expect = 6.169e-40
Identity = 79/182 (43.41%), Postives = 104/182 (57.14%), Query Frame = 2 
Query:  545 SNVGKDSGFVKLLEKWLERPLLSFYCVIHDENLCTKASAKH*XXXXXXXX------XXXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYF 1072
            S VGK  G VKL+E+ +  P++  +C+IH ENLC K S      +               +L HRQ +    +++SEY DL LH   RWLS G VL  FVS IDAI++ L E  +++PQLED+  +    FL DIT   NELNL LQ    T+L +FE W  F  KL +F  DI +STF+YF
Sbjct:   92 SMVGKQKGAVKLIEEKVGHPVMKLHCIIHQENLCAKMSNSDFNDVMATVAKVINFLVKRSALTHRQFRSLLEEMDSEYADLPLHLAVRWLSCGKVLERFVSCIDAIKVFLAEKGQQYPQLEDENCIVKHFFLADITGQLNELNLRLQGAGQTVLDMFETWTAFVTKLAVFSGDIASSTFRYF 273
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Cavefish
Match: ENSAMXT00000053332.1 (pep primary_assembly:Astyanax_mexicanus-2.0:1:2353647:2355530:-1 gene:ENSAMXG00000042872.1 transcript:ENSAMXT00000053332.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 124.79 bits (312), Expect = 1.091e-31
Identity = 58/110 (52.73%), Postives = 75/110 (68.18%), Query Frame = 2 
Query:  743 DIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYF 1072
            +++SEY DL LH+  RWLS G VL  FVS IDAI++ L E  +++PQLED+ W+  L FL DIT H NELNL LQ    T++ +FE W  F  KL +F  DI +STF+YF
Sbjct:  199 EMDSEYADLPLHSAVRWLSCGKVLERFVSCIDAIKVFLAEKGQQYPQLEDEKWIVKLFFLADITGHLNELNLRLQGAGQTVMDMFETWTAFVAKLAVFSGDIASSTFRYF 308
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Cavefish
Match: ENSAMXT00000049756.1 (pep primary_assembly:Astyanax_mexicanus-2.0:21:10276151:10280466:-1 gene:ENSAMXG00000035254.1 transcript:ENSAMXT00000049756.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 110.538 bits (275), Expect = 2.407e-26
Identity = 59/139 (42.45%), Postives = 80/139 (57.55%), Query Frame = 2 
Query:  545 SNVGKDSGFVKLLEKWLERPLLSFYCVIHDENLCTKASAKH*XXXXXXXX------XXXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHF 943
            S VGK  G VKL+E+ +  P++  +C+IH ENLC K S      +               +L HRQ +    +++SEY DL LH+  RWLS G VL  FVS IDAI++ L E  +++PQLED+ W+  L FL DIT H 
Sbjct:  252 SMVGKQKGAVKLIEEKVGHPIMKLHCIIHQENLCAKMSNSDFNDVMATVAKVINFLVKRSALTHRQFRSLLEEMDSEYADLPLHSAVRWLSCGKVLERFVSCIDAIKVFLAEKGQQYPQLEDEKWIVKLFFLADITGHL 390

HSP 2 Score: 27.7202 bits (60), Expect = 2.407e-26
Identity = 11/26 (42.31%), Postives = 18/26 (69.23%), Query Frame = 1 
Query:  379 FINSPQIHEELCELEPLTGTTRGVDI 456
            + ++  + EELC L+P+  TTRG +I
Sbjct:  199 YCDTTTVREELCCLQPMPDTTRGDNI 224
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Cavefish
Match: ENSAMXT00000052542.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000549.1:35642:40620:1 gene:ENSAMXG00000033785.1 transcript:ENSAMXT00000052542.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 98.2117 bits (243), Expect = 3.860e-22
Identity = 66/191 (34.55%), Postives = 95/191 (49.74%), Query Frame = 2 
Query:  545 SNVGKDSGFVKLLEKWL----ERPLLSFYCVIHDENLCTKASAKH*X-------XXXXXXXXXXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIK 1084
            S VG+ +GF+  L++ L       L  ++C+IH E LC     KH          +         SL HR+ + F  DI + Y D++ H E RWLSRGNVL  F +L + I++ L +  +    +E+  W+  L FLTD+T   NELNL LQ     I  LFE    F  KL LF + ++     +FP  +
Sbjct:  252 SMVGETNGFIGHLKRHLGPDQAAELKHYHCIIHQEALC----GKHLQFKQIMDFVVSAVNFIRARSLNHREFQSFLEDISAAYGDVIYHTEVRWLSRGNVLKIFFALRNEIKLFLEQKGKDTLVMENTDWIADLAFLTDLTGLLNELNLKLQGKDRLICHLFEAVCAFEMKLNLFATQLKKGNLTHFPTCQ 438
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Cavefish
Match: ENSAMXT00000037725.1 (pep primary_assembly:Astyanax_mexicanus-2.0:14:29162452:29166863:1 gene:ENSAMXG00000037303.1 transcript:ENSAMXT00000037725.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 97.8265 bits (242), Expect = 8.038e-22
Identity = 66/191 (34.55%), Postives = 94/191 (49.21%), Query Frame = 2 
Query:  545 SNVGKDSGFVKLLEKWL----ERPLLSFYCVIHDENLCTKASAKH*X-------XXXXXXXXXXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIK 1084
            S VG+ +GF+  L++ L       L  ++C+IH E LC     KH          +         SL HR+   F  DI + Y D++ H E RWLSRGNVL  F +L + I++ L +  +    +E+  W+  L FLTD+T   NELNL LQ     I  LFE    F  KL LF + ++     +FP  +
Sbjct:  440 SVVGETNGFIGHLKRHLGPDQAAELKHYHCIIHQEALC----GKHLHFKEIMDFVVSAVNFIRARSLKHREFPSFLEDISAAYGDVIYHTEVRWLSRGNVLKRFFALRNEIKLFLEQKGKDTLVMENTDWIADLAFLTDLTGLLNELNLKLQGKDRLICHLFEAVCAFEMKLNLFATQLKKGNLTHFPTCQ 626
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Medaka
Match: ENSORLT00000033718.1 (general transcription factor II-I repeat domain-containing protein 2 [Source:NCBI gene;Acc:110015985])

HSP 1 Score: 121.324 bits (303), Expect = 7.385e-30
Identity = 67/185 (36.22%), Postives = 101/185 (54.59%), Query Frame = 2 
Query:  545 SNVGKDSGFVKLLEKWLERPLLSFYCVIHDENLCTKASAKH*XXXX-----XXXXXXXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIK 1084
            S  G   GFV LL+K L+R LL+F+C++H E LC +       ++      +    +   L HRQ +   ++++S Y DLLLH + RWLSRG VL  F + ++ +++ L      FP+LE   W   L F+ D+T H N LN  LQ    T L + EE  GF  KL +F +D++  T  +FP ++
Sbjct:  257 SMTGAQKGFVALLQKSLDRKLLTFHCILHQEALCAQTFPPECTQVMDLVIQIVNKIMANGLNHRQFRSLLDELDSAYSDLLLHNKVRWLSRGVVLKRFAACLEEVKVFLSNKGLTFPELEQPEWQEKLHFMVDMTAHLNTLNTSLQGKGGTALHMLEEVLGFERKLTVFATDLKRGTLYHFPALR 441

HSP 2 Score: 28.8758 bits (63), Expect = 7.385e-30
Identity = 16/44 (36.36%), Postives = 24/44 (54.55%), Query Frame = 1 
Query:  379 FINSPQIHEELCELEPLTGTTRGVDIFE*LIAFTNFKNGKSVDL 510
            ++++    EE+ EL PL G TRG DI E ++     K  K+  L
Sbjct:  204 YVSAAGPQEEMIELIPLKGQTRGEDICEAVLHCLRTKEIKTTHL 247
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Medaka
Match: ENSORLT00000038486.1 (pep primary_assembly:ASM223467v1:11:14048492:14066451:1 gene:ENSORLG00000022236.1 transcript:ENSORLT00000038486.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 104.76 bits (260), Expect = 2.903e-24
Identity = 62/179 (34.64%), Postives = 98/179 (54.75%), Query Frame = 2 
Query:  551 VGKDSGFVKLLEKWLERPLLSFYCVIHDENLCTKASAKH*XXXXXXXXXX-----XXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYF 1072
            VGK+ GFV LL +  +R +LSF+C++H E LC +   +   ++    +++       +L  RQ K   +++   Y  LLLH+  RWLSRG VL+ F + +  I+  L     + P+L D  WL    +L D+T H N LN+ +Q   +TIL L +    F  +L+LF +DI+T    +F
Sbjct:  163 VGKNRGFVALLREHEKRRILSFHCILHQEALCAQMCGEQFGEVMSLVVRVVNFIVARALNDRQFKALLDEVGYSYPGLLLHSNVRWLSRGTVLSRFAACLSEIRTFLERKNVEHPELADTEWLLKFYYLVDMTGHLNHLNVKMQGVGNTILSLQQAVFAFEKRLELFIADIETGRLLHF 341
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Medaka
Match: ENSORLT00000027991.1 (pep primary_assembly:ASM223467v1:15:8817619:8823815:1 gene:ENSORLG00000022420.1 transcript:ENSORLT00000027991.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 103.219 bits (256), Expect = 1.227e-23
Identity = 61/179 (34.08%), Postives = 97/179 (54.19%), Query Frame = 2 
Query:  551 VGKDSGFVKLLEKWLERPLLSFYCVIHDENLCTKASAKH*XXXXXXXXXX-----XXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYF 1072
            VGK+ GFV LL +  +R +LSF+C++H E LC +   +   ++    +++       +L  RQ K    ++ + Y  LLLH+  RWLSRG VL+ F + +  I+  L     + P+L D  WL    +L D+T H N LN+ +Q   +TI  L +    F  +L+LF +DI+T    +F
Sbjct:  256 VGKNRGFVALLREHEKRRILSFHCILHQEALCAQMCGEQLGEVMSLVVRVVNFIVARALNDRQFKALLEEVGNSYPGLLLHSNVRWLSRGKVLSRFAACLSEIRTFLERKNVEHPELADTEWLLKFYYLVDMTGHLNHLNVKMQGVGNTIFSLQQAVFAFENRLELFIADIETGRLLHF 434
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Medaka
Match: ENSORLT00000040270.1 (pep primary_assembly:ASM223467v1:5:3656515:3660788:1 gene:ENSORLG00000025153.1 transcript:ENSORLT00000040270.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 103.219 bits (256), Expect = 1.328e-23
Identity = 61/179 (34.08%), Postives = 97/179 (54.19%), Query Frame = 2 
Query:  551 VGKDSGFVKLLEKWLERPLLSFYCVIHDENLCTKASAKH*XXXXXXXXXX-----XXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYF 1072
            VGK+ GFV LL +  +R +LSF+C++H E LC +   +   ++    +++       +L  RQ K    ++ + Y  LLLH+  RWLSRG VL+ F + +  I+  L     + P+L D  WL    +L D+T H N LN+ +Q   +TI  L +    F  +L+LF +DI+T    +F
Sbjct:  256 VGKNRGFVALLREHEKRRILSFHCILHQEALCAQMCGEQLGEVMSLVVRVVNFIVARALNDRQFKALLEEVGNSYPGLLLHSNVRWLSRGKVLSRFAACLSEIRTFLERKNVEHPELADTEWLLKFYYLVDMTGHLNHLNVKMQGVGNTIFSLQQAVFAFENRLELFIADIETGRLLHF 434
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Medaka
Match: ENSORLT00000028910.1 (pep primary_assembly:ASM223467v1:18:2548265:2550717:1 gene:ENSORLG00000029755.1 transcript:ENSORLT00000028910.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 102.834 bits (255), Expect = 1.472e-23
Identity = 61/179 (34.08%), Postives = 96/179 (53.63%), Query Frame = 2 
Query:  551 VGKDSGFVKLLEKWLERPLLSFYCVIHDENLCTKASAKH*XXXXXXXX-----XXXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYF 1072
            VGK+ GFV LL +  +R +LSF+C++H E LC +   +   ++    +      +  +L  RQ K    ++ + Y  LLLH+  RWLSRG VL+ F + +  I+  L     + P+L D  WL    +L D+T H N LN+ +Q   +TI  L +    F  +L+LF +DI+T    +F
Sbjct:  256 VGKNRGFVALLREHEKRRILSFHCILHQEALCAQMCGEQLGEVMSLVVWVVNFIVARALNDRQFKALLEEVGNSYPGLLLHSNVRWLSRGKVLSRFAACLSEIRTFLERKNVEHPELADTEWLLKFYYLVDMTGHLNHLNVRMQGVGNTIFSLQQAVFAFENRLELFIADIETGRLLHF 434
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BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Planmine SMEST
Match: SMESG000011945.1 (SMESG000011945.1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.118e-23
Identity = 56/172 (32.56%), Postives = 93/172 (54.07%), Query Frame = 2 
Query:  545 SNVGKDSGFVKLLEKWLERPLLSFYCVIHDENLCTKASAKH*XXXXXXXXX-----XXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESD 1045
            S +G   GFV +L++ +   +  ++C+ + E LC +   +   K+    +      +  +L HRQ+K+   ++ESEY D LLH + +WLSRGN L    SL+  I++ L+E    +P+L D   +    F+ D+  H N+LN   QRN +TI  + E+ + F  KL +F  D
Sbjct:  144 SMIGVSKGFVAILKEKINHEIFVYHCIFNQETLCAQTFPEEICKVMRLVITIINSIVAKALNHRQLKECLVEMESEYADPLLHNKIQWLSRGNALKRLASLLQEIEVFLLEKGVHYPELTDNQRIQNFHFVVDVMYHINQLNRKPQRNGNTIFSMLEKVDSFKNKLSVFAED 315
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Planmine SMEST
Match: SMESG000011571.1 (SMESG000011571.1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.265e-22
Identity = 58/160 (36.25%), Postives = 94/160 (58.75%), Query Frame = 2 
Query:  542 TSNVGKD-SGF----VKLLEKWLERPLLSFYCVIHDENLCTKA-----SAKH*XXXXXXXXXXXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILK 991
            +++V K  SGF    V +L++ +   + +++C+IH E LC +      S    L + +    ++  L HRQ K+F  ++ESEY +LLLH + RWLSR NVL  F SL+  I++ L+E    +P+L +  W+    F+ D+T+H N+LNL LQ   +TI +
Sbjct:   15 STDVAKSMSGFRKWFVAILKERINHEIFAYHCIIHQEALCEQTFPEEISKVMRLMITIINSIVVKGLNHRQFKEFLVEMESEYANLLLHNKVRWLSRRNVLKLFSSLLPEIEVFLLEKGVHYPELTNNQWIQYCHFVVDVTSHLNQLNLKLQGKGNTIFR 174
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BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Planmine SMEST
Match: SMESG000079713.1 (SMESG000079713.1)

HSP 1 Score: 69.707 bits (169), Expect = 1.177e-12
Identity = 50/130 (38.46%), Postives = 68/130 (52.31%), Query Frame = 2 
Query:  716 HRQVKDFSN--DIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIKLISKE 1099
            H Q K+F    D+E    DL  +   +WLS  + LN FV LI  +   L E ++ +P+LED  WL  L FLTDI      LNL LQ  Q+TI    +    F  KL LF++D+ T    +FP +K  S +
Sbjct:  353 HCQFKNFLEELDLEDHPNDLTFYCLVKWLSTYDALNRFVYLIGPVTDFLQEKKKPYPKLEDDNWLHDLMFLTDI---MQSLNLQLQGKQNTIADFTQTIFSFK-KLMLFKNDLTTRNLNHFPWLKSKSSQ 478
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Planmine SMEST
Match: SMESG000037770.1 (SMESG000037770.1)

HSP 1 Score: 65.855 bits (159), Expect = 2.458e-12
Identity = 54/182 (29.67%), Postives = 83/182 (45.60%), Query Frame = 2 
Query:  551 VGKDSGFVKLLEKWL-----ERPLLSFYCVIHDENLCTKASAKH*XXXXXXXXXXXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIE----EKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQY 1069
             GK+ G +  ++  +     +  ++  +C+IH E+LC               L     L   Q K F  D+ES++ D+L H   RWLS G VL    +L D I ++ +E++    E   Q++   WL    F  DI +  NELN+ LQ       +LF E   F  KLQLF   ++    +Y
Sbjct:  774 TGKNVGLITKIKDHVKNLHPDHTIIPLHCIIHQESLCKSV------------LDFNTLLTLLQFKSFLEDLESDHSDVLYHTNVRWLSLGKVLKRVWNLKDEI-VLFLEMKDITVEFTTQMKTSEWLSDFSFAVDILDKLNELNVKLQGKGVFAHELFAEVKSFQVKLQLFSRHLKEQKDRY 942

HSP 2 Score: 24.6386 bits (52), Expect = 2.458e-12
Identity = 12/23 (52.17%), Postives = 15/23 (65.22%), Query Frame = 1 
Query:  403 EELCELEPLTGTTRGVDIFE*LI 471
            EEL  +E L  TT G D+F+ LI
Sbjct:  727 EELLSMEHLKDTTTGQDLFDNLI 749
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Planmine SMEST
Match: SMESG000025120.1 (SMESG000025120.1)

HSP 1 Score: 64.6994 bits (156), Expect = 3.829e-11
Identity = 44/127 (34.65%), Postives = 60/127 (47.24%), Query Frame = 2 
Query:  716 HRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILK-------LFEEWNGFXFKLQLFESDIQTSTFQYFP 1075
            HR  K    D E +  DL+LH E  WLS+G +L  FVSLI+ I+  + +I+E + +L D   L  LRFLTDI   F      + R    I         L      F  KL L  S +  ++  +FP
Sbjct:  442 HRLFKTLLEDTEDKEHDLILHTEVSWLSKGKILTRFVSLIEEIKTFINDIKENYDELADSHRLIDLRFLTDIMEKFEFFKFGVARKDKNIADKVIAIPILNIAVKSFKAKLDLLISHLHINSLVHFP 568
The following BLAST results are available for this feature:
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
GTF2IRD2B9.972e-1731.74GTF2I repeat domain containing 2B [Source:HGNC Sym... [more]
GTF2IRD23.587e-1631.74GTF2I repeat domain containing 2 [Source:HGNC Symb... [more]
GTF2IRD2B1.550e-1531.14GTF2I repeat domain containing 2B [Source:HGNC Sym... [more]
GTF2IRD25.216e-1531.14GTF2I repeat domain containing 2 [Source:HGNC Symb... [more]
ZMYM61.111e-1032.50zinc finger MYM-type containing 6 [Source:HGNC Sym... [more]
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BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
CR392001.32.893e-3036.81pep chromosome:GRCz11:8:38963323:38965260:-1 gene:... [more]
AL928808.12.223e-1930.77pep chromosome:GRCz11:20:17257101:17259573:-1 gene... [more]
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BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2
Match NameE-valueIdentityDescription
spag11.882e-1432.95sperm associated antigen 1 [Source:Xenbase;Acc:XB-... [more]
ENSXETT00000016563.11.975e-1432.95pep primary_assembly:Xenopus_tropicalis_v9.1:4:373... [more]
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BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 4
Match NameE-valueIdentityDescription
Gtf2ird24.266e-1428.74GTF2I repeat domain containing 2 [Source:MGI Symbo... [more]
Zmym67.498e-1031.45zinc finger, MYM-type 6 [Source:MGI Symbol;Acc:MGI... [more]
Zmym67.621e-1031.45zinc finger, MYM-type 6 [Source:MGI Symbol;Acc:MGI... [more]
Zbed51.764e-834.11zinc finger, BED type containing 5 [Source:MGI Sym... [more]
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BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q6EKJ0|GTD2B_HUMAN7.446e-1531.14General transcription factor II-I repeat domain-co... [more]
sp|Q86UP8|GTD2A_HUMAN2.505e-1431.14General transcription factor II-I repeat domain-co... [more]
sp|A4IFA3|GT2D2_BOVIN7.615e-1429.94General transcription factor II-I repeat domain-co... [more]
sp|Q99NI3|GT2D2_MOUSE2.984e-1328.74General transcription factor II-I repeat domain-co... [more]
sp|O95789|ZMYM6_HUMAN5.337e-1032.50Zinc finger MYM-type protein 6 OS=Homo sapiens OX=... [more]
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BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A087TCS86.504e-4551.91General transcription factor II-I repeat domain-co... [more]
A0A3B1K4F41.629e-3643.41Uncharacterized protein OS=Astyanax mexicanus OX=7... [more]
H2YQ584.678e-3340.64Dimer_Tnp_hAT domain-containing protein OS=Ciona s... [more]
J9K7561.568e-3039.89DUF4371 domain-containing protein OS=Acyrthosiphon... [more]
A0A3B1J4912.880e-2852.73Uncharacterized protein OS=Astyanax mexicanus OX=7... [more]
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BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSAMXT00000031692.16.169e-4043.41pep primary_assembly:Astyanax_mexicanus-2.0:7:2150... [more]
ENSAMXT00000053332.11.091e-3152.73pep primary_assembly:Astyanax_mexicanus-2.0:1:2353... [more]
ENSAMXT00000049756.12.407e-2642.45pep primary_assembly:Astyanax_mexicanus-2.0:21:102... [more]
ENSAMXT00000052542.13.860e-2234.55pep primary_assembly:Astyanax_mexicanus-2.0:APWO02... [more]
ENSAMXT00000037725.18.038e-2234.55pep primary_assembly:Astyanax_mexicanus-2.0:14:291... [more]
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BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSORLT00000033718.17.385e-3036.22general transcription factor II-I repeat domain-co... [more]
ENSORLT00000038486.12.903e-2434.64pep primary_assembly:ASM223467v1:11:14048492:14066... [more]
ENSORLT00000027991.11.227e-2334.08pep primary_assembly:ASM223467v1:15:8817619:882381... [more]
ENSORLT00000040270.11.328e-2334.08pep primary_assembly:ASM223467v1:5:3656515:3660788... [more]
ENSORLT00000028910.11.472e-2334.08pep primary_assembly:ASM223467v1:18:2548265:255071... [more]
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BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000011945.19.118e-2332.56SMESG000011945.1[more]
SMESG000011571.11.265e-2236.25SMESG000011571.1[more]
SMESG000079713.11.177e-1238.46SMESG000079713.1[more]
SMESG000037770.12.458e-1229.67SMESG000037770.1[more]
SMESG000025120.13.829e-1134.65SMESG000025120.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30005442 ID=SMED30005442|Name=General transcription factor II-I repeat domain-containing protein 2A|organism=Schmidtea mediterranea sexual|type=transcript|length=1112bp
CTGAAATCGAAAAATTTAAAAGTATCTCATGTTCATGTGAGGAAAAATAT
GGATGTGTAAAAATAGGTGCAAAGACGGTCTGCACTTTATGTAACGAACA
TGTCATTACCAAACCAATCACAAGAATTTTTTCAGTAATATGCAGGAAGA
CGAAAAAATAGAACATATGAAAAAATGTGTAATCCAATATGATTAACAAA
AGAGTTTATTCCAGTAGTTCGTAGTTAAACATCAGCCATCTACGAAGTCG
AGTTTTATTTCATCCCTTAGCATAATAAAGTACGGAAAGCCAATCACGGA
TAGTGAGTTTCTAAAAAATACATTTTTAGNGTGTGCAGATTCGCTTTTGC
TAGGCTAGCAATATTTGCACGATATGGATTTATTAATTCTCCACAGATAC
ATGAGGAACTTTGCGAACTTGAACCTTTGACAGGTACAACAAGAGGCGTT
GATATTTTTGAATAATTAATAGCATTTACAAATTTCAAAAATGGAAAATC
TGTGGATTTAAAATTTTTTTGTCAATTATCACTGATGGTGAACCAGCAAC
GTTGGGAAAGATAGTGGGTTTGTAAAGTTATTGGAAAAATGGCTTGAACG
TCCACTTTTATCGTTTTATTGTGTGATTCATGACGAGAATTTATGTACAA
AAGCATCTGCCAAACATTAACTGAAATTATGAGTGTGGTAGTTAAAATTG
TTAATATCGCTAATCCACAGGCAGGTCAAAGATTTTTCAAATGACATAGA
ATCGGAATATTGTGATTTGCTTTTGCATGCAGAATTTCGCTGGCTTAGTA
GGGGAAATGTTTTGAACTGATTCGTTTCTCTCATTGATGCCATCCAAATT
GTTTTGATTGAAATAGAAGAAAAGTTTCCTCAACTCGAAGATAAGCTCTG
GCTGTTTGGGTTAAGGTTTTTGACAGACATTACAAATCATTTTAATGAGC
TTAATTTGCATCTCCAAAGAAATCAGCATACAATTCTAAAATTGTTTGAA
GAATGGAATGGTTTCGNATTTAAGTTACAACTCTTTGAAAGTGATATACA
AACTTCAACGTTCCAATATTTTCCTATGATCAAATTAATTAGTAAAGAAC
TTGACAATGCCA
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0004523RNA-DNA hybrid ribonuclease activity
GO:0003676nucleic acid binding
Vocabulary: biological process
TermDefinition
GO:0090502RNA phosphodiester bond hydrolysis, endonucleolytic