General transcription factor II-I repeat domain-containing protein 2A
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30005442 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 4
Homology
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Human
Match: GTF2IRD2B (GTF2I repeat domain containing 2B [Source:HGNC Symbol;Acc:HGNC:33125]) HSP 1 Score: 83.5741 bits (205), Expect = 9.972e-17 Identity = 53/167 (31.74%), Postives = 87/167 (52.10%), Query Frame = 2 Query: 605 LLSFYCVIHDENLCT-KASAKH*XXXXXXXXXXXXX--XXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIKLISK 1096 L S C+IH E+LC K H + + V + + S L H + +++S+Y LL + E +WLSRG VL F ++ I + + PQL W+ L FL D+T H N LN+ LQ + + ++++ F KL L+E+ + + +FP +KL+S+ Sbjct: 815 LKSICCIIHPESLCAQKLKMDHVMDVVVKSVNWICSRGLNHSEFTTLLYELDSQYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSIDWIRDLAFLVDMTMHLNALNISLQGHSQIVTQMYDLIRAFLAKLCLWETHLTRNNLAHFPTLKLVSR 981
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Human
Match: GTF2IRD2 (GTF2I repeat domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30775]) HSP 1 Score: 82.0333 bits (201), Expect = 3.587e-16 Identity = 53/167 (31.74%), Postives = 86/167 (51.50%), Query Frame = 2 Query: 605 LLSFYCVIHDENLCT-KASAKH*XXXXXXXXXXXXX--XXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIKLISK 1096 L S C+IH E+LC K H + + V + + S L H + +++S+Y LL + E +WLSRG VL F ++ I + + PQL W+ L FL D+T H N LN+ LQ + + ++++ F KL L+E+ + + +FP +KL S+ Sbjct: 810 LKSICCIIHPESLCAQKLKMDHVMDVVVKSVNWICSRGLNHSEFTTLLYELDSQYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSIDWIRDLAFLVDMTMHLNALNISLQGHSQIVTQMYDLIRAFLAKLCLWETHLTRNNLAHFPTLKLASR 976
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Human
Match: GTF2IRD2B (GTF2I repeat domain containing 2B [Source:HGNC Symbol;Acc:HGNC:33125]) HSP 1 Score: 79.7221 bits (195), Expect = 1.550e-15 Identity = 52/167 (31.14%), Postives = 85/167 (50.90%), Query Frame = 2 Query: 605 LLSFYCVIHDENLCT-KASAKH*XXXXXXXX--XXXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIKLISK 1096 L S C+IH E+LC K H + + V + L H + +++S+Y LL + E +WLSRG VL F ++ I + + PQL W+ L FL D+T H N LN+ LQ + + ++++ F KL L+E+ + + +FP +KL+S+ Sbjct: 648 LKSICCIIHPESLCAQKLKMDHVMDVVVKSVNWICSRGLNHSEFTTLLYELDSQYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSIDWIRDLAFLVDMTMHLNALNISLQGHSQIVTQMYDLIRAFLAKLCLWETHLTRNNLAHFPTLKLVSR 814
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Human
Match: GTF2IRD2 (GTF2I repeat domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30775]) HSP 1 Score: 78.1814 bits (191), Expect = 5.216e-15 Identity = 52/167 (31.14%), Postives = 84/167 (50.30%), Query Frame = 2 Query: 605 LLSFYCVIHDENLCT-KASAKH*XXXXXXXX--XXXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIKLISK 1096 L S C+IH E+LC K H + + V + L H + +++S+Y LL + E +WLSRG VL F ++ I + + PQL W+ L FL D+T H N LN+ LQ + + ++++ F KL L+E+ + + +FP +KL S+ Sbjct: 648 LKSICCIIHPESLCAQKLKMDHVMDVVVKSVNWICSRGLNHSEFTTLLYELDSQYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSIDWIRDLAFLVDMTMHLNALNISLQGHSQIVTQMYDLIRAFLAKLCLWETHLTRNNLAHFPTLKLASR 814
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Human
Match: ZMYM6 (zinc finger MYM-type containing 6 [Source:HGNC Symbol;Acc:HGNC:13050]) HSP 1 Score: 65.0846 bits (157), Expect = 1.111e-10 Identity = 39/120 (32.50%), Postives = 60/120 (50.00%), Query Frame = 2 Query: 719 RQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQ-LEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFP 1075 R + ++ SE+ L LHAE RW+SRG +L L I+I L + + D+ W+ L +L+DI + NELNL LQ T L + + F KL+++ Q + + FP Sbjct: 1048 RMLTILCEEMGSEHVSLPLHAEVRWISRGRMLKRLFELRHEIEIFLSQKHSDLAKYFHDEEWVGKLAYLSDIFSLINELNLSLQGTLTTFFNLCNKIDVFKRKLKMWLKRTQENDYDMFP 1167
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Zebrafish
Match: CR392001.3 (pep chromosome:GRCz11:8:38963323:38965260:-1 gene:ENSDARG00000117159.1 transcript:ENSDART00000181495.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CR392001.3) HSP 1 Score: 122.094 bits (305), Expect = 2.893e-30 Identity = 67/182 (36.81%), Postives = 105/182 (57.69%), Query Frame = 2 Query: 554 GKDSGFVKLLEKWLERPLLSFYCVIHDENLCTKASAKH*XXXX-----XXXXXXXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIK 1084 G GFV LL+K L+R LL+F+C++H E LC + + + + + +L HRQ + ++++SEY DLLLH + RWLS+ VL FV+ ++ ++ L + +PQLED WL L F+ D+T+H N+LN LQ +T L++ E F KL +F D+Q T +FP ++ Sbjct: 257 GSKRGFVTLLQKALDRNLLAFHCILHQEALCAQTFPSECMVVMNLVIEMVNKIIAKALNHRQFRALLDEVDSEYSDLLLHNKVRWLSKDEVLRRFVACLEHVKTFLKSKDLIYPQLEDTEWLEKLHFMVDMTSHLNKLNESLQVRGNTALQMLEAVLSFERKLTVFARDVQRGTLSHFPSLR 438 HSP 2 Score: 29.6462 bits (65), Expect = 2.893e-30 Identity = 15/35 (42.86%), Postives = 21/35 (60.00%), Query Frame = 1 Query: 379 FINSPQIHEELCELEPLTGTTRGVDIFE*LIAFTN 483 ++NS EE+ +L PL G TRG DI E ++ N Sbjct: 201 YVNSDGPQEEIIKLIPLKGQTRGEDICEAVLKCLN 235
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Zebrafish
Match: AL928808.1 (pep chromosome:GRCz11:20:17257101:17259573:-1 gene:ENSDARG00000101333.2 transcript:ENSDART00000166397.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AL928808.1) HSP 1 Score: 84.3445 bits (207), Expect = 2.223e-19 Identity = 56/182 (30.77%), Postives = 100/182 (54.95%), Query Frame = 2 Query: 551 VGKDSGFVKLLEKWLERPLL-SFYCVIHDEN-LCTKASAKH*XXXXXXXX--XXXXXXXHRQVKDFSNDIESEY-CDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMI 1081 +G + G V L + P +F+C+IH E+ + K + H +K + + +L HRQ K+ ++++ + DLL H RWLSRG+VL+ F L++ +++ L E +++P+L D W+ L FL D+ ++ N LN+ LQ + L + F KL+LF++ +Q + +FP + Sbjct: 263 LGSERGLVGLCKADDRFPAFWTFHCIIHQEHWVSKKLNLDHIMKPVLEIVNFVRTHALNHRQFKNLIDELDEDLPSDLLFHCAVRWLSRGHVLSRFFELLNPVKLFLAEKHKEYPELHDPQWISDLAFLVDVLHYLNGLNVDLQGKLKMLPDLVQSVFAFVNKLKLFKTHLQKRDYTHFPTL 444 HSP 2 Score: 27.335 bits (59), Expect = 2.223e-19 Identity = 13/32 (40.62%), Postives = 18/32 (56.25%), Query Frame = 1 Query: 397 IHEELCELEPLTGTTRGVDIFE*LIAFTNFKN 492 I EEL ++ PL TRG+D+ E L+ N Sbjct: 214 IREELLDIVPLKDRTRGIDLKETLMTVVEKAN 245 HSP 3 Score: 23.0978 bits (48), Expect = 2.223e-19 Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3 Query: 522 SIITDGEPATLGKIVGL 572 +I+TDG PA LG GL Sbjct: 253 AIVTDGAPAMLGSERGL 269
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Xenopus
Match: spag1 (sperm associated antigen 1 [Source:Xenbase;Acc:XB-GENE-853609]) HSP 1 Score: 71.2478 bits (173), Expect = 1.882e-14 Identity = 57/173 (32.95%), Postives = 84/173 (48.55%), Query Frame = 2 Query: 551 VGKDSGFVKLLEK-WLERPLLSFYCVIHDENLCTKASAKH*XXXXXXXXX-----XXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEK---FPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFES 1042 VG++ G L K ++ + F+C++H E LC + + V + SL HR+ K+F ++++ Y DLLLH RWLS G L F +L I + L +I+ L D +L L FLTDIT N LNL+LQ + +L+ F KL L +S Sbjct: 265 VGRNQGLAGRLRKEGIDCHM--FHCIVHQEVLCGTSLKMADIMDVVTKVTNLIRGGNRSLTHRRFKNFLEELDAAYGDLLLHTNVRWLSAGKCLVRFFALRKEIHLYLSDIKCDSYLLEHLTDVSFLTALAFLTDITQFLNSLNLNLQGRDQNVSQLYSHIAAFRNKLHLLKS 435 HSP 2 Score: 27.7202 bits (60), Expect = 1.882e-14 Identity = 12/22 (54.55%), Postives = 16/22 (72.73%), Query Frame = 1 Query: 394 QIHEELCELEPLTGTTRGVDIF 459 I EEL E+ PL G+T+G DI+ Sbjct: 216 HISEELLEIVPLHGSTKGEDIY 237
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Xenopus
Match: ENSXETT00000016563.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:4:37379994:37381838:-1 gene:ENSXETG00000009412.1 transcript:ENSXETT00000016563.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 71.2478 bits (173), Expect = 1.975e-14 Identity = 57/173 (32.95%), Postives = 84/173 (48.55%), Query Frame = 2 Query: 551 VGKDSGFVKLLEK-WLERPLLSFYCVIHDENLCTKASAKH*XXXXXXXXX-----XXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEK---FPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFES 1042 VG++ G L K ++ + F+C++H E LC + + V + SL HR+ K+F ++++ Y DLLLH RWLS G L F +L I + L +I+ L D +L L FLTDIT N LNL+LQ + +L+ F KL L +S Sbjct: 265 VGRNQGLAGRLRKEGIDCHM--FHCIVHQEVLCGTSLKMADIMDVVTKVTNLIRGGNRSLTHRRFKNFLEELDAAYGDLLLHTNVRWLSAGKCLVRFFALRKEIHLYLSDIKCDSYLLEHLTDVSFLTALAFLTDITQFLNSLNLNLQGRDQNVSQLYSHIAAFRNKLHLLKS 435 HSP 2 Score: 27.7202 bits (60), Expect = 1.975e-14 Identity = 12/22 (54.55%), Postives = 16/22 (72.73%), Query Frame = 1 Query: 394 QIHEELCELEPLTGTTRGVDIF 459 I EEL E+ PL G+T+G DI+ Sbjct: 216 HISEELLEIVPLHGSTKGEDIY 237
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Mouse
Match: Gtf2ird2 (GTF2I repeat domain containing 2 [Source:MGI Symbol;Acc:MGI:2149780]) HSP 1 Score: 75.0998 bits (183), Expect = 4.266e-14 Identity = 48/167 (28.74%), Postives = 79/167 (47.31%), Query Frame = 2 Query: 605 LLSFYCVIHDENLCTKASAKH*XXXXXXXXXXXXXXXHRQVKDFSN---DIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIKLISK 1096 L S C+IH E LC + + V I DF+ +++S+Y LL H +WL RG VL F ++ I + + PQL + W+ L FL D+T H N L+ LQ + + ++++ F KL L+E+ + + +FP +K +S+ Sbjct: 642 LKSVRCIIHPEWLCAQKLRMGHVMDVVVDSVNWICSRGLNHGDFTTLLYELDSQYGSLLYHTALKWLGRGLVLRRFFESLEEIDSFMSSRGKPVPQLSSRDWILDLAFLVDMTTHLNTLDASLQGHSQIVTQMYDFIRAFLAKLCLWETHLARNNLAHFPTLKSVSR 808
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Mouse
Match: Zmym6 (zinc finger, MYM-type 6 [Source:MGI Symbol;Acc:MGI:106505]) HSP 1 Score: 62.003 bits (149), Expect = 7.498e-10 Identity = 39/124 (31.45%), Postives = 65/124 (52.42%), Query Frame = 2 Query: 743 DIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQ-LEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIKLISKELDNA 1111 ++ SE+ +L L+AE RWLSRG +L L I+I L + + D+ W+ L +L DI + N+LN LQ T L+ + + F +L+++ Q + + FP L S+ LD++ Sbjct: 888 EMGSEHVNLPLNAEVRWLSRGRILTRLFELRHEIEIFLNQKHSDLARYFHDEEWIAKLAYLADIFSLINKLNSSLQGTMTTFFNLYNKVDVFQKRLKMWLKRAQENDYGMFP---LFSEFLDSS 1008
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Mouse
Match: Zmym6 (zinc finger, MYM-type 6 [Source:MGI Symbol;Acc:MGI:106505]) HSP 1 Score: 62.003 bits (149), Expect = 7.621e-10 Identity = 39/124 (31.45%), Postives = 65/124 (52.42%), Query Frame = 2 Query: 743 DIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQ-LEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIKLISKELDNA 1111 ++ SE+ +L L+AE RWLSRG +L L I+I L + + D+ W+ L +L DI + N+LN LQ T L+ + + F +L+++ Q + + FP L S+ LD++ Sbjct: 980 EMGSEHVNLPLNAEVRWLSRGRILTRLFELRHEIEIFLNQKHSDLARYFHDEEWIAKLAYLADIFSLINKLNSSLQGTMTTFFNLYNKVDVFQKRLKMWLKRAQENDYGMFP---LFSEFLDSS 1100
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Mouse
Match: Zbed5 (zinc finger, BED type containing 5 [Source:MGI Symbol;Acc:MGI:1919220]) HSP 1 Score: 57.3806 bits (137), Expect = 1.764e-8 Identity = 44/129 (34.11%), Postives = 60/129 (46.51%), Query Frame = 2 Query: 734 FSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAI-----QIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIKLISKELD 1105 +D++ LLLH E RWLSRG VL L D + Q + + E F D L + +L DI NELNL LQ T L L E+ + F KLQL++ + + F P + +E D Sbjct: 476 LCSDLDEPSKTLLLHTEGRWLSRGKVLKRIFELRDELKMFFNQKAIRQFEALF---SDNSALQKVAYLVDIFTILNELNLSLQGPNSTCLDLSEKIHSFQMKLQLWQKKLDENKFYMLPTLSAFFEEHD 601
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. UniProt/SwissProt
Match: sp|Q6EKJ0|GTD2B_HUMAN (General transcription factor II-I repeat domain-containing protein 2B OS=Homo sapiens OX=9606 GN=GTF2IRD2B PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 7.446e-15 Identity = 52/167 (31.14%), Postives = 85/167 (50.90%), Query Frame = 2 Query: 605 LLSFYCVIHDENLCT-KASAKH*XXXXXXXX--XXXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIKLISK 1096 L S C+IH E+LC K H + + V + L H + +++S+Y LL + E +WLSRG VL F ++ I + + PQL W+ L FL D+T H N LN+ LQ + + ++++ F KL L+E+ + + +FP +KL+S+ Sbjct: 648 LKSICCIIHPESLCAQKLKMDHVMDVVVKSVNWICSRGLNHSEFTTLLYELDSQYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSIDWIRDLAFLVDMTMHLNALNISLQGHSQIVTQMYDLIRAFLAKLCLWETHLTRNNLAHFPTLKLVSR 814
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. UniProt/SwissProt
Match: sp|Q86UP8|GTD2A_HUMAN (General transcription factor II-I repeat domain-containing protein 2A OS=Homo sapiens OX=9606 GN=GTF2IRD2 PE=1 SV=3) HSP 1 Score: 78.1814 bits (191), Expect = 2.505e-14 Identity = 52/167 (31.14%), Postives = 84/167 (50.30%), Query Frame = 2 Query: 605 LLSFYCVIHDENLCT-KASAKH*XXXXXXXX--XXXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIKLISK 1096 L S C+IH E+LC K H + + V + L H + +++S+Y LL + E +WLSRG VL F ++ I + + PQL W+ L FL D+T H N LN+ LQ + + ++++ F KL L+E+ + + +FP +KL S+ Sbjct: 648 LKSICCIIHPESLCAQKLKMDHVMDVVVKSVNWICSRGLNHSEFTTLLYELDSQYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSIDWIRDLAFLVDMTMHLNALNISLQGHSQIVTQMYDLIRAFLAKLCLWETHLTRNNLAHFPTLKLASR 814
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. UniProt/SwissProt
Match: sp|A4IFA3|GT2D2_BOVIN (General transcription factor II-I repeat domain-containing protein 2 OS=Bos taurus OX=9913 GN=GTF2IRD2 PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 7.615e-14 Identity = 50/167 (29.94%), Postives = 84/167 (50.30%), Query Frame = 2 Query: 605 LLSFYCVIHDENLCT-KASAKH*XXXXXXXX--XXXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIKLISK 1096 L S C+IH E+LC K H + + V + L H + +++ +Y LL + E +WLSRG VL F ++ I + + PQL + W+ L FL D+T H N LN+ LQ + + ++++ F KL L+E+ + + +FP +K +S+ Sbjct: 649 LKSVCCIIHPESLCAQKLKMDHIMSVVVNAVNWICSRGLNHSEFTTLLYELDCQYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSQDWIKDLAFLVDMTMHLNTLNISLQGHSQIVTQMYDLIRAFLAKLCLWETHLARNNLAHFPTLKSVSR 815
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. UniProt/SwissProt
Match: sp|Q99NI3|GT2D2_MOUSE (General transcription factor II-I repeat domain-containing protein 2 OS=Mus musculus OX=10090 GN=Gtf2ird2 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.984e-13 Identity = 48/167 (28.74%), Postives = 79/167 (47.31%), Query Frame = 2 Query: 605 LLSFYCVIHDENLCTKASAKH*XXXXXXXXXXXXXXXHRQVKDFSN---DIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIKLISK 1096 L S C+IH E LC + + V I DF+ +++S+Y LL H +WL RG VL F ++ I + + PQL + W+ L FL D+T H N L+ LQ + + ++++ F KL L+E+ + + +FP +K +S+ Sbjct: 642 LKSVRCIIHPEWLCAQKLRMGHVMDVVVDSVNWICSRGLNHGDFTTLLYELDSQYGSLLYHTALKWLGRGLVLRRFFESLEEIDSFMSSRGKPVPQLSSRDWILDLAFLVDMTTHLNTLDASLQGHSQIVTQMYDFIRAFLAKLCLWETHLARNNLAHFPTLKSVSR 808
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. UniProt/SwissProt
Match: sp|O95789|ZMYM6_HUMAN (Zinc finger MYM-type protein 6 OS=Homo sapiens OX=9606 GN=ZMYM6 PE=1 SV=2) HSP 1 Score: 65.0846 bits (157), Expect = 5.337e-10 Identity = 39/120 (32.50%), Postives = 60/120 (50.00%), Query Frame = 2 Query: 719 RQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQ-LEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFP 1075 R + ++ SE+ L LHAE RW+SRG +L L I+I L + + D+ W+ L +L+DI + NELNL LQ T L + + F KL+++ Q + + FP Sbjct: 1048 RMLTILCEEMGSEHVSLPLHAEVRWISRGRMLKRLFELRHEIEIFLSQKHSDLAKYFHDEEWVGKLAYLSDIFSLINELNLSLQGTLTTFFNLCNKIDVFKRKLKMWLKRTQENDYDMFP 1167
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. TrEMBL
Match: A0A087TCS8 (General transcription factor II-I repeat domain-containing protein 2A (Fragment) OS=Stegodyphus mimosarum OX=407821 GN=X975_02296 PE=4 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 6.504e-45 Identity = 95/183 (51.91%), Postives = 118/183 (64.48%), Query Frame = 2 Query: 554 GKDSGFVKLLEKWLERPLLSFYCVIHDENLCTKASAKH*XXXXXXXXX------XXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIK 1084 GK GFVKL+E L R LLSF+C+IH+ENL KASA+ + +K +LIHR+ K F +IES+Y DLLLH+E RWL RG VLN FV D IQI L EI E +L DK W L FLTDI NH+N+ + LQ N TILK++EEW F KL LFE+DI+T F +FP++K Sbjct: 103 GKTVGFVKLMENELGRSLLSFHCIIHEENLFAKASAQQRKNVMENVVKIVNMIIARSALIHRRFKAFLEEIESKYGDLLLHSEIRWL-RGKVLNRFVECFDDIQIFLHEIGENDLELNDKQWFLRLLFLTDIMNHYNDFKVRLQGNNRTILKIYEEWKSFTSKLILFETDIKTKKFHFFPLLK 284 HSP 2 Score: 48.1358 bits (113), Expect = 6.504e-45 Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 1 Query: 373 YGFINSPQIHEELCELEPLTGTTRGVDIFE*LIAFTNFKNGKSVDLK 513 + INS ++EELC L + TT+G DIF + F NFKNG+ +DLK Sbjct: 41 FASINSSNVNEELCVLASVNDTTKGTDIFPQVQDFGNFKNGQVLDLK 87
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. TrEMBL
Match: A0A3B1K4F4 (Uncharacterized protein OS=Astyanax mexicanus OX=7994 PE=4 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 1.629e-36 Identity = 79/182 (43.41%), Postives = 104/182 (57.14%), Query Frame = 2 Query: 545 SNVGKDSGFVKLLEKWLERPLLSFYCVIHDENLCTKASAKH*XXXXXXXX------XXXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYF 1072 S VGK G VKL+E+ + P++ +C+IH ENLC K S + +L HRQ + +++SEY DL LH RWLS G VL FVS IDAI++ L E +++PQLED+ + FL DIT NELNL LQ T+L +FE W F KL +F DI +STF+YF Sbjct: 92 SMVGKQKGAVKLIEEKVGHPVMKLHCIIHQENLCAKMSNSDFNDVMATVAKVINFLVKRSALTHRQFRSLLEEMDSEYADLPLHLAVRWLSCGKVLERFVSCIDAIKVFLAEKGQQYPQLEDENCIVKHFFLADITGQLNELNLRLQGAGQTVLDMFETWTAFVTKLAVFSGDIASSTFRYF 273
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. TrEMBL
Match: H2YQ58 (Dimer_Tnp_hAT domain-containing protein OS=Ciona savignyi OX=51511 PE=4 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 4.678e-33 Identity = 76/187 (40.64%), Postives = 103/187 (55.08%), Query Frame = 2 Query: 551 VGKDSGFVKLLEKWLERPLLSFYCVIHDENLCTKASAKH*XXXXXXXXX------XXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIKLIS 1093 VG GFV L E+ + P++ +C+IH ENLC K S + K + HRQ + ++ S Y D+ LH RW SRG VL FV + I++ L ++ +P+LED WL L FL DIT H NELNL LQ + T++ LFEEW GF KL ++ DIQT++F YF +K S Sbjct: 204 VGIHRGFVTLAEQMIGHPVMKLHCIIHQENLCAKISDSELNDVMSTVTKIVNFLVARSAKTHRQFRSLLEEMGSAYRDVPLHCSVRWFSRGKVLWRFVKCLVEIKVFLATQKQTYPELEDDKWLAKLMFLVDITAHLNELNLRLQGSGQTVICLFEEWKGFISKLDVYTQDIQTASFLYFKHLKAFS 390
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. TrEMBL
Match: J9K756 (DUF4371 domain-containing protein OS=Acyrthosiphon pisum OX=7029 PE=4 SV=2) HSP 1 Score: 133.265 bits (334), Expect = 1.568e-30 Identity = 73/183 (39.89%), Postives = 108/183 (59.02%), Query Frame = 2 Query: 551 VGKDSGFVKLLEKWLERPLLSFYCVIHDENLCTKASAKH*XXXXXXXXX-----XXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIK 1084 VGK +GFV+L K + PL+SF+C+IH E LC K S K + K +L +RQ +++ES+Y LL++ RWLSRG VL+ FV L++ I++ L E + +P+L+D WL L F TD T +NELN LQ H +L +FE GF K++++ D++ F+YFP +K Sbjct: 259 VGKHNGFVQLFSKEISHPLISFHCLIHQEALCAKDSLKSLQNVMEVVTKVVNFITSRALNNRQFTKLLDEVESQYAGLLMYNSVRWLSRGQVLHRFVELLEEIRLFLFEKSQDYPELKDLNWLNDLMFFTDFTTMYNELNKKLQGPGHIVLTMFENIKGFEKKIEIYCKDLKNEKFKYFPHLK 441
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. TrEMBL
Match: A0A3B1J491 (Uncharacterized protein OS=Astyanax mexicanus OX=7994 PE=4 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 2.880e-28 Identity = 58/110 (52.73%), Postives = 75/110 (68.18%), Query Frame = 2 Query: 743 DIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYF 1072 +++SEY DL LH+ RWLS G VL FVS IDAI++ L E +++PQLED+ W+ L FL DIT H NELNL LQ T++ +FE W F KL +F DI +STF+YF Sbjct: 199 EMDSEYADLPLHSAVRWLSCGKVLERFVSCIDAIKVFLAEKGQQYPQLEDEKWIVKLFFLADITGHLNELNLRLQGAGQTVMDMFETWTAFVAKLAVFSGDIASSTFRYF 308
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Cavefish
Match: ENSAMXT00000031692.1 (pep primary_assembly:Astyanax_mexicanus-2.0:7:21501471:21504188:-1 gene:ENSAMXG00000043766.1 transcript:ENSAMXT00000031692.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 146.747 bits (369), Expect = 6.169e-40 Identity = 79/182 (43.41%), Postives = 104/182 (57.14%), Query Frame = 2 Query: 545 SNVGKDSGFVKLLEKWLERPLLSFYCVIHDENLCTKASAKH*XXXXXXXX------XXXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYF 1072 S VGK G VKL+E+ + P++ +C+IH ENLC K S + +L HRQ + +++SEY DL LH RWLS G VL FVS IDAI++ L E +++PQLED+ + FL DIT NELNL LQ T+L +FE W F KL +F DI +STF+YF Sbjct: 92 SMVGKQKGAVKLIEEKVGHPVMKLHCIIHQENLCAKMSNSDFNDVMATVAKVINFLVKRSALTHRQFRSLLEEMDSEYADLPLHLAVRWLSCGKVLERFVSCIDAIKVFLAEKGQQYPQLEDENCIVKHFFLADITGQLNELNLRLQGAGQTVLDMFETWTAFVTKLAVFSGDIASSTFRYF 273
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Cavefish
Match: ENSAMXT00000053332.1 (pep primary_assembly:Astyanax_mexicanus-2.0:1:2353647:2355530:-1 gene:ENSAMXG00000042872.1 transcript:ENSAMXT00000053332.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 124.79 bits (312), Expect = 1.091e-31 Identity = 58/110 (52.73%), Postives = 75/110 (68.18%), Query Frame = 2 Query: 743 DIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYF 1072 +++SEY DL LH+ RWLS G VL FVS IDAI++ L E +++PQLED+ W+ L FL DIT H NELNL LQ T++ +FE W F KL +F DI +STF+YF Sbjct: 199 EMDSEYADLPLHSAVRWLSCGKVLERFVSCIDAIKVFLAEKGQQYPQLEDEKWIVKLFFLADITGHLNELNLRLQGAGQTVMDMFETWTAFVAKLAVFSGDIASSTFRYF 308
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Cavefish
Match: ENSAMXT00000049756.1 (pep primary_assembly:Astyanax_mexicanus-2.0:21:10276151:10280466:-1 gene:ENSAMXG00000035254.1 transcript:ENSAMXT00000049756.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 110.538 bits (275), Expect = 2.407e-26 Identity = 59/139 (42.45%), Postives = 80/139 (57.55%), Query Frame = 2 Query: 545 SNVGKDSGFVKLLEKWLERPLLSFYCVIHDENLCTKASAKH*XXXXXXXX------XXXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHF 943 S VGK G VKL+E+ + P++ +C+IH ENLC K S + +L HRQ + +++SEY DL LH+ RWLS G VL FVS IDAI++ L E +++PQLED+ W+ L FL DIT H Sbjct: 252 SMVGKQKGAVKLIEEKVGHPIMKLHCIIHQENLCAKMSNSDFNDVMATVAKVINFLVKRSALTHRQFRSLLEEMDSEYADLPLHSAVRWLSCGKVLERFVSCIDAIKVFLAEKGQQYPQLEDEKWIVKLFFLADITGHL 390 HSP 2 Score: 27.7202 bits (60), Expect = 2.407e-26 Identity = 11/26 (42.31%), Postives = 18/26 (69.23%), Query Frame = 1 Query: 379 FINSPQIHEELCELEPLTGTTRGVDI 456 + ++ + EELC L+P+ TTRG +I Sbjct: 199 YCDTTTVREELCCLQPMPDTTRGDNI 224
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Cavefish
Match: ENSAMXT00000052542.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000549.1:35642:40620:1 gene:ENSAMXG00000033785.1 transcript:ENSAMXT00000052542.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 98.2117 bits (243), Expect = 3.860e-22 Identity = 66/191 (34.55%), Postives = 95/191 (49.74%), Query Frame = 2 Query: 545 SNVGKDSGFVKLLEKWL----ERPLLSFYCVIHDENLCTKASAKH*X-------XXXXXXXXXXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIK 1084 S VG+ +GF+ L++ L L ++C+IH E LC KH + SL HR+ + F DI + Y D++ H E RWLSRGNVL F +L + I++ L + + +E+ W+ L FLTD+T NELNL LQ I LFE F KL LF + ++ +FP + Sbjct: 252 SMVGETNGFIGHLKRHLGPDQAAELKHYHCIIHQEALC----GKHLQFKQIMDFVVSAVNFIRARSLNHREFQSFLEDISAAYGDVIYHTEVRWLSRGNVLKIFFALRNEIKLFLEQKGKDTLVMENTDWIADLAFLTDLTGLLNELNLKLQGKDRLICHLFEAVCAFEMKLNLFATQLKKGNLTHFPTCQ 438
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Cavefish
Match: ENSAMXT00000037725.1 (pep primary_assembly:Astyanax_mexicanus-2.0:14:29162452:29166863:1 gene:ENSAMXG00000037303.1 transcript:ENSAMXT00000037725.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 97.8265 bits (242), Expect = 8.038e-22 Identity = 66/191 (34.55%), Postives = 94/191 (49.21%), Query Frame = 2 Query: 545 SNVGKDSGFVKLLEKWL----ERPLLSFYCVIHDENLCTKASAKH*X-------XXXXXXXXXXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIK 1084 S VG+ +GF+ L++ L L ++C+IH E LC KH + SL HR+ F DI + Y D++ H E RWLSRGNVL F +L + I++ L + + +E+ W+ L FLTD+T NELNL LQ I LFE F KL LF + ++ +FP + Sbjct: 440 SVVGETNGFIGHLKRHLGPDQAAELKHYHCIIHQEALC----GKHLHFKEIMDFVVSAVNFIRARSLKHREFPSFLEDISAAYGDVIYHTEVRWLSRGNVLKRFFALRNEIKLFLEQKGKDTLVMENTDWIADLAFLTDLTGLLNELNLKLQGKDRLICHLFEAVCAFEMKLNLFATQLKKGNLTHFPTCQ 626
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Medaka
Match: ENSORLT00000033718.1 (general transcription factor II-I repeat domain-containing protein 2 [Source:NCBI gene;Acc:110015985]) HSP 1 Score: 121.324 bits (303), Expect = 7.385e-30 Identity = 67/185 (36.22%), Postives = 101/185 (54.59%), Query Frame = 2 Query: 545 SNVGKDSGFVKLLEKWLERPLLSFYCVIHDENLCTKASAKH*XXXX-----XXXXXXXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIK 1084 S G GFV LL+K L+R LL+F+C++H E LC + ++ + + L HRQ + ++++S Y DLLLH + RWLSRG VL F + ++ +++ L FP+LE W L F+ D+T H N LN LQ T L + EE GF KL +F +D++ T +FP ++ Sbjct: 257 SMTGAQKGFVALLQKSLDRKLLTFHCILHQEALCAQTFPPECTQVMDLVIQIVNKIMANGLNHRQFRSLLDELDSAYSDLLLHNKVRWLSRGVVLKRFAACLEEVKVFLSNKGLTFPELEQPEWQEKLHFMVDMTAHLNTLNTSLQGKGGTALHMLEEVLGFERKLTVFATDLKRGTLYHFPALR 441 HSP 2 Score: 28.8758 bits (63), Expect = 7.385e-30 Identity = 16/44 (36.36%), Postives = 24/44 (54.55%), Query Frame = 1 Query: 379 FINSPQIHEELCELEPLTGTTRGVDIFE*LIAFTNFKNGKSVDL 510 ++++ EE+ EL PL G TRG DI E ++ K K+ L Sbjct: 204 YVSAAGPQEEMIELIPLKGQTRGEDICEAVLHCLRTKEIKTTHL 247
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Medaka
Match: ENSORLT00000038486.1 (pep primary_assembly:ASM223467v1:11:14048492:14066451:1 gene:ENSORLG00000022236.1 transcript:ENSORLT00000038486.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 104.76 bits (260), Expect = 2.903e-24 Identity = 62/179 (34.64%), Postives = 98/179 (54.75%), Query Frame = 2 Query: 551 VGKDSGFVKLLEKWLERPLLSFYCVIHDENLCTKASAKH*XXXXXXXXXX-----XXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYF 1072 VGK+ GFV LL + +R +LSF+C++H E LC + + ++ +++ +L RQ K +++ Y LLLH+ RWLSRG VL+ F + + I+ L + P+L D WL +L D+T H N LN+ +Q +TIL L + F +L+LF +DI+T +F Sbjct: 163 VGKNRGFVALLREHEKRRILSFHCILHQEALCAQMCGEQFGEVMSLVVRVVNFIVARALNDRQFKALLDEVGYSYPGLLLHSNVRWLSRGTVLSRFAACLSEIRTFLERKNVEHPELADTEWLLKFYYLVDMTGHLNHLNVKMQGVGNTILSLQQAVFAFEKRLELFIADIETGRLLHF 341
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Medaka
Match: ENSORLT00000027991.1 (pep primary_assembly:ASM223467v1:15:8817619:8823815:1 gene:ENSORLG00000022420.1 transcript:ENSORLT00000027991.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 103.219 bits (256), Expect = 1.227e-23 Identity = 61/179 (34.08%), Postives = 97/179 (54.19%), Query Frame = 2 Query: 551 VGKDSGFVKLLEKWLERPLLSFYCVIHDENLCTKASAKH*XXXXXXXXXX-----XXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYF 1072 VGK+ GFV LL + +R +LSF+C++H E LC + + ++ +++ +L RQ K ++ + Y LLLH+ RWLSRG VL+ F + + I+ L + P+L D WL +L D+T H N LN+ +Q +TI L + F +L+LF +DI+T +F Sbjct: 256 VGKNRGFVALLREHEKRRILSFHCILHQEALCAQMCGEQLGEVMSLVVRVVNFIVARALNDRQFKALLEEVGNSYPGLLLHSNVRWLSRGKVLSRFAACLSEIRTFLERKNVEHPELADTEWLLKFYYLVDMTGHLNHLNVKMQGVGNTIFSLQQAVFAFENRLELFIADIETGRLLHF 434
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Medaka
Match: ENSORLT00000040270.1 (pep primary_assembly:ASM223467v1:5:3656515:3660788:1 gene:ENSORLG00000025153.1 transcript:ENSORLT00000040270.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 103.219 bits (256), Expect = 1.328e-23 Identity = 61/179 (34.08%), Postives = 97/179 (54.19%), Query Frame = 2 Query: 551 VGKDSGFVKLLEKWLERPLLSFYCVIHDENLCTKASAKH*XXXXXXXXXX-----XXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYF 1072 VGK+ GFV LL + +R +LSF+C++H E LC + + ++ +++ +L RQ K ++ + Y LLLH+ RWLSRG VL+ F + + I+ L + P+L D WL +L D+T H N LN+ +Q +TI L + F +L+LF +DI+T +F Sbjct: 256 VGKNRGFVALLREHEKRRILSFHCILHQEALCAQMCGEQLGEVMSLVVRVVNFIVARALNDRQFKALLEEVGNSYPGLLLHSNVRWLSRGKVLSRFAACLSEIRTFLERKNVEHPELADTEWLLKFYYLVDMTGHLNHLNVKMQGVGNTIFSLQQAVFAFENRLELFIADIETGRLLHF 434
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Medaka
Match: ENSORLT00000028910.1 (pep primary_assembly:ASM223467v1:18:2548265:2550717:1 gene:ENSORLG00000029755.1 transcript:ENSORLT00000028910.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 102.834 bits (255), Expect = 1.472e-23 Identity = 61/179 (34.08%), Postives = 96/179 (53.63%), Query Frame = 2 Query: 551 VGKDSGFVKLLEKWLERPLLSFYCVIHDENLCTKASAKH*XXXXXXXX-----XXXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYF 1072 VGK+ GFV LL + +R +LSF+C++H E LC + + ++ + + +L RQ K ++ + Y LLLH+ RWLSRG VL+ F + + I+ L + P+L D WL +L D+T H N LN+ +Q +TI L + F +L+LF +DI+T +F Sbjct: 256 VGKNRGFVALLREHEKRRILSFHCILHQEALCAQMCGEQLGEVMSLVVWVVNFIVARALNDRQFKALLEEVGNSYPGLLLHSNVRWLSRGKVLSRFAACLSEIRTFLERKNVEHPELADTEWLLKFYYLVDMTGHLNHLNVRMQGVGNTIFSLQQAVFAFENRLELFIADIETGRLLHF 434
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Planmine SMEST
Match: SMESG000011945.1 (SMESG000011945.1) HSP 1 Score: 97.8265 bits (242), Expect = 9.118e-23 Identity = 56/172 (32.56%), Postives = 93/172 (54.07%), Query Frame = 2 Query: 545 SNVGKDSGFVKLLEKWLERPLLSFYCVIHDENLCTKASAKH*XXXXXXXXX-----XXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESD 1045 S +G GFV +L++ + + ++C+ + E LC + + K+ + + +L HRQ+K+ ++ESEY D LLH + +WLSRGN L SL+ I++ L+E +P+L D + F+ D+ H N+LN QRN +TI + E+ + F KL +F D Sbjct: 144 SMIGVSKGFVAILKEKINHEIFVYHCIFNQETLCAQTFPEEICKVMRLVITIINSIVAKALNHRQLKECLVEMESEYADPLLHNKIQWLSRGNALKRLASLLQEIEVFLLEKGVHYPELTDNQRIQNFHFVVDVMYHINQLNRKPQRNGNTIFSMLEKVDSFKNKLSVFAED 315
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Planmine SMEST
Match: SMESG000011571.1 (SMESG000011571.1) HSP 1 Score: 93.9745 bits (232), Expect = 1.265e-22 Identity = 58/160 (36.25%), Postives = 94/160 (58.75%), Query Frame = 2 Query: 542 TSNVGKD-SGF----VKLLEKWLERPLLSFYCVIHDENLCTKA-----SAKH*XXXXXXXXXXXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILK 991 +++V K SGF V +L++ + + +++C+IH E LC + S L + + ++ L HRQ K+F ++ESEY +LLLH + RWLSR NVL F SL+ I++ L+E +P+L + W+ F+ D+T+H N+LNL LQ +TI + Sbjct: 15 STDVAKSMSGFRKWFVAILKERINHEIFAYHCIIHQEALCEQTFPEEISKVMRLMITIINSIVVKGLNHRQFKEFLVEMESEYANLLLHNKVRWLSRRNVLKLFSSLLPEIEVFLLEKGVHYPELTNNQWIQYCHFVVDVTSHLNQLNLKLQGKGNTIFR 174
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Planmine SMEST
Match: SMESG000079713.1 (SMESG000079713.1) HSP 1 Score: 69.707 bits (169), Expect = 1.177e-12 Identity = 50/130 (38.46%), Postives = 68/130 (52.31%), Query Frame = 2 Query: 716 HRQVKDFSN--DIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQYFPMIKLISKE 1099 H Q K+F D+E DL + +WLS + LN FV LI + L E ++ +P+LED WL L FLTDI LNL LQ Q+TI + F KL LF++D+ T +FP +K S + Sbjct: 353 HCQFKNFLEELDLEDHPNDLTFYCLVKWLSTYDALNRFVYLIGPVTDFLQEKKKPYPKLEDDNWLHDLMFLTDI---MQSLNLQLQGKQNTIADFTQTIFSFK-KLMLFKNDLTTRNLNHFPWLKSKSSQ 478
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Planmine SMEST
Match: SMESG000037770.1 (SMESG000037770.1) HSP 1 Score: 65.855 bits (159), Expect = 2.458e-12 Identity = 54/182 (29.67%), Postives = 83/182 (45.60%), Query Frame = 2 Query: 551 VGKDSGFVKLLEKWL-----ERPLLSFYCVIHDENLCTKASAKH*XXXXXXXXXXXXXXXHRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIE----EKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILKLFEEWNGFXFKLQLFESDIQTSTFQY 1069 GK+ G + ++ + + ++ +C+IH E+LC L L Q K F D+ES++ D+L H RWLS G VL +L D I ++ +E++ E Q++ WL F DI + NELN+ LQ +LF E F KLQLF ++ +Y Sbjct: 774 TGKNVGLITKIKDHVKNLHPDHTIIPLHCIIHQESLCKSV------------LDFNTLLTLLQFKSFLEDLESDHSDVLYHTNVRWLSLGKVLKRVWNLKDEI-VLFLEMKDITVEFTTQMKTSEWLSDFSFAVDILDKLNELNVKLQGKGVFAHELFAEVKSFQVKLQLFSRHLKEQKDRY 942 HSP 2 Score: 24.6386 bits (52), Expect = 2.458e-12 Identity = 12/23 (52.17%), Postives = 15/23 (65.22%), Query Frame = 1 Query: 403 EELCELEPLTGTTRGVDIFE*LI 471 EEL +E L TT G D+F+ LI Sbjct: 727 EELLSMEHLKDTTTGQDLFDNLI 749
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Planmine SMEST
Match: SMESG000025120.1 (SMESG000025120.1) HSP 1 Score: 64.6994 bits (156), Expect = 3.829e-11 Identity = 44/127 (34.65%), Postives = 60/127 (47.24%), Query Frame = 2 Query: 716 HRQVKDFSNDIESEYCDLLLHAEFRWLSRGNVLN*FVSLIDAIQIVLIEIEEKFPQLEDKLWLFGLRFLTDITNHFNELNLHLQRNQHTILK-------LFEEWNGFXFKLQLFESDIQTSTFQYFP 1075 HR K D E + DL+LH E WLS+G +L FVSLI+ I+ + +I+E + +L D L LRFLTDI F + R I L F KL L S + ++ +FP Sbjct: 442 HRLFKTLLEDTEDKEHDLILHTEVSWLSKGKILTRFVSLIEEIKTFINDIKENYDELADSHRLIDLRFLTDIMEKFEFFKFGVARKDKNIADKVIAIPILNIAVKSFKAKLDLLISHLHINSLVHFP 568 The following BLAST results are available for this feature:
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 2
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 2
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 4
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30005442 ID=SMED30005442|Name=General transcription factor II-I repeat domain-containing protein 2A|organism=Schmidtea mediterranea sexual|type=transcript|length=1112bpback to top Annotated Terms
The following terms have been associated with this transcript:
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