CIP29

Overview
NameCIP29 (AFD29611.1)
Smed IDSMED30005428
Length (bp)903
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of CIP29 (SMED30005428) t-SNE clustered cells

Violin plots show distribution of expression levels for CIP29 (SMED30005428) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of CIP29 (SMED30005428) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for CIP29 (SMED30005428) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30005428

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 14

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30005428h1SMcG0012564 SmedASXL_006015SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Smed sexual biotypeSMED30005428h1SMcG0012564 Contig54166newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30005428h1SMcG0012564 Contig54166uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
pharynxSMED30005428h1SMcG0012564 dd_Smed_v4_2297_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30005428h1SMcG0012564 dd_Smed_v4_2297_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30005428h1SMcG0012564 dd_Smed_v4_2297_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30005428h1SMcG0012564 dd_Smed_v4_2297_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30005428h1SMcG0012564 dd_Smed_v4_2297_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30005428h1SMcG0012564 dd_Smed_v4_2297_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30005428h1SMcG0012564 dd_Smed_v4_2297_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30005428h1SMcG0012564 dd_Smed_v4_2297_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30005428h1SMcG0012564 dd_Smed_v4_2297_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30005428h1SMcG0012564 dd_Smed_v6_2297_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30005428h1SMcG0012564 SMED_10768_V2GPL14150PMID:22385657
Wagner et al., 2012		whole organism asexual adult colorimetric in situ hybridization evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of CIP29 vs. Ensembl Human
Match: SARNP (SAP domain containing ribonucleoprotein [Source:HGNC Symbol;Acc:HGNC:24432])

HSP 1 Score: 71.2478 bits (173), Expect = 4.676e-14
Identity = 77/248 (31.05%), Postives = 118/248 (47.58%), Query Frame = 2 
Query:   56 DLTKLKVNDLRKKCKDLGLSITGNKSELISRIQDRKNEGGDESVLNEAELLGELDGSDSQVVSNVDEDLLLGDSTXXXXXXXXXXXXXXILQIDEPLSEPPVITDVEEPSAKIPKLDMQPIKETDKVLTIDNSEEKKKQDRAARFGIITNDTEENKKLARAQRFGLDVSKSNG-----DVTVDIEKLKKREERFGVSVSDKLSKAADEEKKLKRAERFGVQTSIQVESVGGVNLNDDKKAVRAARFGL 784
            +L KLK+ +L+++C   GL   G K +LI R+Q                    L+    +  +  D   +LGD T E + +           I+ P+ E       EEP  K   +D+   K+  K+ T +  + ++ Q RA RF +  +   E+KK ARA RFG+    + G        V+++KLK+R +RFG++VS    K+ D+EK  KR ERFG+ TS      G     + KK  RA RFG+
Sbjct:    7 ELHKLKLAELKQECLARGLETKGIKQDLIHRLQ------------------AYLEEHAEEEANEED---VLGDETEEEETK----------PIELPVKE-------EEPPEKT--VDVAAEKKVVKI-TSEIPQTERMQKRAERFNVPVSL--ESKKAARAARFGISSVPTKGLSSDNKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKLKKRKERFGIVTS--SAGTGTTEDTEAKKRKRAERFGI 209
[Close]
BLAST of CIP29 vs. Ensembl Human
Match: SARNP (SAP domain containing ribonucleoprotein [Source:HGNC Symbol;Acc:HGNC:24432])

HSP 1 Score: 71.2478 bits (173), Expect = 4.676e-14
Identity = 77/248 (31.05%), Postives = 118/248 (47.58%), Query Frame = 2 
Query:   56 DLTKLKVNDLRKKCKDLGLSITGNKSELISRIQDRKNEGGDESVLNEAELLGELDGSDSQVVSNVDEDLLLGDSTXXXXXXXXXXXXXXILQIDEPLSEPPVITDVEEPSAKIPKLDMQPIKETDKVLTIDNSEEKKKQDRAARFGIITNDTEENKKLARAQRFGLDVSKSNG-----DVTVDIEKLKKREERFGVSVSDKLSKAADEEKKLKRAERFGVQTSIQVESVGGVNLNDDKKAVRAARFGL 784
            +L KLK+ +L+++C   GL   G K +LI R+Q                    L+    +  +  D   +LGD T E + +           I+ P+ E       EEP  K   +D+   K+  K+ T +  + ++ Q RA RF +  +   E+KK ARA RFG+    + G        V+++KLK+R +RFG++VS    K+ D+EK  KR ERFG+ TS      G     + KK  RA RFG+
Sbjct:    7 ELHKLKLAELKQECLARGLETKGIKQDLIHRLQ------------------AYLEEHAEEEANEED---VLGDETEEEETK----------PIELPVKE-------EEPPEKT--VDVAAEKKVVKI-TSEIPQTERMQKRAERFNVPVSL--ESKKAARAARFGISSVPTKGLSSDNKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKLKKRKERFGIVTS--SAGTGTTEDTEAKKRKRAERFGI 209
[Close]
BLAST of CIP29 vs. Ensembl Human
Match: SARNP (SAP domain containing ribonucleoprotein [Source:HGNC Symbol;Acc:HGNC:24432])

HSP 1 Score: 65.855 bits (159), Expect = 3.839e-12
Identity = 74/246 (30.08%), Postives = 115/246 (46.75%), Query Frame = 2 
Query:   56 DLTKLKVNDLRKKCKDLGLSITGNKSELISRIQDRKNEGGDESVLNEAELLGELDGSDSQVVSNVDEDLLLGDSTXXXXXXXXXXXXXXILQIDEPLSEPPVITDVEEPSAKIPKLDMQPIKETDKVLTIDNSEEKKKQDRAARFGIITNDTEENKKLARAQRFGLDVSKSNG-----DVTVDIEKLKKREERFGVSVSDKLSKAADEEKKLKRAERFGVQTSIQVESVGGVNLNDDKKAVRAARF 778
            +L KLK+ +L+++C   GL   G K +LI R+Q                    L+    +  +  D   +LGD T E + +           I+ P+ E       EEP  K   +D+   K+  K+ T +  + ++ Q RA RF +  +   E+KK ARA RFG+    + G        V+++KLK+R +RFG++VS    K+ D+EK  KR ERFG+ TS    S G     D +  +   RF
Sbjct:    7 ELHKLKLAELKQECLARGLETKGIKQDLIHRLQ------------------AYLEEHAEEEANEED---VLGDETEEEETK----------PIELPVKE-------EEPPEKT--VDVAAEKKVVKI-TSEIPQTERMQKRAERFNVPVSL--ESKKAARAARFGISSVPTKGLSSDNKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKLKKRKERFGIVTS----SAGTGTTEDTEVKIYLERF 205
[Close]
BLAST of CIP29 vs. Ensembl Human
Match: AC023055.1 (novel protein)

HSP 1 Score: 67.0106 bits (162), Expect = 9.325e-12
Identity = 74/243 (30.45%), Postives = 114/243 (46.91%), Query Frame = 2 
Query:   71 KVNDLRKKCKDLGLSITGNKSELISRIQDRKNEGGDESVLNEAELLGELDGSDSQVVSNVDEDLLLGDSTXXXXXXXXXXXXXXILQIDEPLSEPPVITDVEEPSAKIPKLDMQPIKETDKVLTIDNSEEKKKQDRAARFGIITNDTEENKKLARAQRFGLDVSKSNG-----DVTVDIEKLKKREERFGVSVSDKLSKAADEEKKLKRAERFGVQTSIQVESVGGVNLNDDKKAVRAARFGL 784
            K+ +L+++C   GL   G K +LI R+Q                    L+    +  +  D   +LGD T E + +           I+ P+ E       EEP  K   +D+   K+  K+ T +  + ++ Q RA RF +    + E+KK ARA RFG+    + G        V+++KLK+R +RFG++VS    K+ D+EK  KR ERFG+ TS      G     + KK  RA RFG+
Sbjct:  325 KLAELKQECLARGLETKGIKQDLIHRLQ------------------AYLEEHAEEEANEED---VLGDETEEEETKP----------IELPVKE-------EEPPEKT--VDVAAEKKVVKI-TSEIPQTERMQKRAERFNVPV--SLESKKAARAARFGISSVPTKGLSSDNKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKLKKRKERFGIVTS--SAGTGTTEDTEAKKRKRAERFGI 522
[Close]
BLAST of CIP29 vs. Ensembl Zebrafish
Match: sarnp (SAP domain containing ribonucleoprotein [Source:ZFIN;Acc:ZDB-GENE-050522-161])

HSP 1 Score: 74.3294 bits (181), Expect = 2.335e-15
Identity = 52/109 (47.71%), Postives = 66/109 (60.55%), Query Frame = 2 
Query:  470 QDRAARFGI-ITNDTEENKKLARAQRFGLDVSKSNGDVT----VDIEKLKKREERFGVSVSDKLSKAADEEKKLKRAERFGVQTSIQVESVGGVNLNDDKKAVRAARFG 781
            Q RA RF + +T D   NKK ARA RFG+   +S+   +    VD+E LKKR ERFG++VS    K  D+EK  KR ERFG+ TS    S GG + ++ KK  RA RFG
Sbjct:   99 QKRAERFNVPLTGD---NKKAARAARFGVTAPESSKGASTKTNVDVEVLKKRAERFGMNVSSVSKKVEDDEKLKKRKERFGIVTS--ASSSGGGDDSEAKKRKRAERFG 202
[Close]
BLAST of CIP29 vs. Ensembl Xenopus
Match: sarnp (SAP domain containing ribonucleoprotein [Source:NCBI gene;Acc:549238])

HSP 1 Score: 70.4774 bits (171), Expect = 7.670e-14
Identity = 51/119 (42.86%), Postives = 69/119 (57.98%), Query Frame = 2 
Query:  452 SEEKKKQDRAARFGIITNDTEENKKLARAQRFGLDVSKSNGDVT-----VDIEKLKKREERFGVSVSDKLSKAADEEKKLKRAERFGVQTSIQVESVGGVNLNDD---KKAVRAARFGL 784
            SE  K Q RA RF +    + ++KK ARA RFGL  S   G+++     V ++KLK+R +RFG+SVS    K+ D+EK  KR ERFG+ TS         ++ DD   KK  RA RFG+
Sbjct:   97 SETDKLQKRAERFNVPA--SVDSKKAARAIRFGLSTSDKKGEISDAKSPVSMDKLKERAQRFGLSVSPVSKKSEDDEKLKKRKERFGIVTS-------SASVTDDTEAKKRKRAERFGI 206
[Close]
BLAST of CIP29 vs. Ensembl Xenopus
Match: sarnp (SAP domain containing ribonucleoprotein [Source:NCBI gene;Acc:549238])

HSP 1 Score: 55.4546 bits (132), Expect = 1.650e-8
Identity = 71/220 (32.27%), Postives = 99/220 (45.00%), Query Frame = 2 
Query:   80 DLRKKCKDLGLSITGNKSELISRIQDRKNEGGDESVLNEAELLGELDGSDSQ--VVSNVDEDLLLGDSTXXXXXXXXXXXXXXILQIDEPLSEPPVITDVEEPSAKIPKLDMQPIKETDKV------LTIDNSEEKKKQDRAARFGIITN--DTEENKKLARAQRFGLDVSKSNGDVTVDIEKLKKREERFGVSVSDKLSKAADEEKKLKRAERFGVQTS 709
            +L+++C   GL + GNKS+LISR+Q    E  +E   NE ++LGE    + Q   V+ V E+                          EP  + P  T+ E+   KI         ETDK+        +  S + KK  RA R GII       E       Q F      S+    V ++KLK+R +RFG+SVS    K+ D+EK  KR ERFG+ TS
Sbjct:   24 ELKQECLARGLEVKGNKSDLISRLQAYIEEHAEEEA-NEEDVLGEETEEEEQKSSVAAVKEE--------------------------EP-DDKPADTNAEKKLVKIS----SSASETDKLQKRAERFNVPASVDSKKAARAIRLGIIWFIFKLTELYFHINLQWFIFSGEISDAKSPVSMDKLKERAQRFGLSVSPVSKKSEDDEKLKKRKERFGIVTS 211
[Close]
BLAST of CIP29 vs. Ensembl Mouse
Match: Sarnp (SAP domain containing ribonucleoprotein [Source:MGI Symbol;Acc:MGI:1913368])

HSP 1 Score: 76.6406 bits (187), Expect = 3.170e-16
Identity = 79/249 (31.73%), Postives = 120/249 (48.19%), Query Frame = 2 
Query:   56 DLTKLKVNDLRKKCKDLGLSITGNKSELISRIQDRKNEGGDESVLNEAELLGELDGSDSQVVSNVDEDLLLGDSTXXXXXXXXXXXXXXILQIDEPLSEPPVITDVEEPSAKIPKLDMQPIKETDKVLT-IDNSEEKKKQDRAARFGIITNDTEENKKLARAQRFGLDVSKSNG-----DVTVDIEKLKKREERFGVSVSDKLSKAADEEKKLKRAERFGVQTSIQVESVGGVNLNDDKKAVRAARFGL 784
            +L KLK+ +L+++C   GL   G K +LI+R+Q    +  +E                       +E+ +LGD T E + +           I+ P+ E       EEP  K   +DM   K+  K+ + I  +E  + Q RA RF +    + E+KK ARA RFG+    + G        V+++KLK+R +RFG++VS    K+ D+EK  KR ERFG+ TS      G     + KK  RA RFG+
Sbjct:    7 ELHKLKLAELKQECLARGLETKGIKQDLINRLQAYLEDHAEE---------------------EANEEDVLGDETEEEEPKP----------IELPVKE-------EEPPEKA--VDMASEKKVVKITSGIPQTE--RMQKRAERFNVPV--SLESKKAARAARFGISSVPTKGLSSDTKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKLKKRKERFGIVTSSA--GTGTTEDTEAKKRKRAERFGI 209
[Close]
BLAST of CIP29 vs. Ensembl Mouse
Match: Sarnp (SAP domain containing ribonucleoprotein [Source:MGI Symbol;Acc:MGI:1913368])

HSP 1 Score: 63.1586 bits (152), Expect = 4.382e-12
Identity = 46/113 (40.71%), Postives = 63/113 (55.75%), Query Frame = 2 
Query:  470 QDRAARFGIITNDTEENKKLARAQRFGLDVSKSNG-----DVTVDIEKLKKREERFGVSVSDKLSKAADEEKKLKRAERFGVQTSIQVESVGGVNLNDD---KKAVRAARFGL 784
            Q RA RF +    + E+KK ARA RFG+    + G        V+++KLK+R +RFG++VS    K+ D+EK  KR ERFG+     V S  G    +D   KK  RA RFG+
Sbjct:   21 QKRAERFNVPV--SLESKKAARAARFGISSVPTKGLSSDTKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKLKKRKERFGI-----VTSSAGTGTTEDTEAKKRKRAERFGI 126

HSP 2 Score: 59.6918 bits (143), Expect = 7.322e-11
Identity = 46/101 (45.54%), Postives = 58/101 (57.43%), Query Frame = 2 
Query:  437 LTIDNSEEKKKQDRAARFGI-------ITNDTEENKKL----ARAQRFGLDVSKSNGDVTVDIEKLKKREERFGVSVSDKLSKAAD--EEKKLKRAERFGV 700
              +  S E KK  RAARFGI       +++DT+    L     RAQRFGL+VS S    + D EKLKKR+ERFG+  S   +   +  E KK KRAERFG+
Sbjct:   27 FNVPVSLESKKAARAARFGISSVPTKGLSSDTKPMVNLDKLKERAQRFGLNVS-SISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRKRAERFGI 126
[Close]
BLAST of CIP29 vs. UniProt/SwissProt
Match: sp|Q9D1J3|SARNP_MOUSE (SAP domain-containing ribonucleoprotein OS=Mus musculus OX=10090 GN=Sarnp PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 2.218e-15
Identity = 79/249 (31.73%), Postives = 120/249 (48.19%), Query Frame = 2 
Query:   56 DLTKLKVNDLRKKCKDLGLSITGNKSELISRIQDRKNEGGDESVLNEAELLGELDGSDSQVVSNVDEDLLLGDSTXXXXXXXXXXXXXXILQIDEPLSEPPVITDVEEPSAKIPKLDMQPIKETDKVLT-IDNSEEKKKQDRAARFGIITNDTEENKKLARAQRFGLDVSKSNG-----DVTVDIEKLKKREERFGVSVSDKLSKAADEEKKLKRAERFGVQTSIQVESVGGVNLNDDKKAVRAARFGL 784
            +L KLK+ +L+++C   GL   G K +LI+R+Q    +  +E                       +E+ +LGD T E + +           I+ P+ E       EEP  K   +DM   K+  K+ + I  +E  + Q RA RF +    + E+KK ARA RFG+    + G        V+++KLK+R +RFG++VS    K+ D+EK  KR ERFG+ TS      G     + KK  RA RFG+
Sbjct:    7 ELHKLKLAELKQECLARGLETKGIKQDLINRLQAYLEDHAEE---------------------EANEEDVLGDETEEEEPKP----------IELPVKE-------EEPPEKA--VDMASEKKVVKITSGIPQTE--RMQKRAERFNVPV--SLESKKAARAARFGISSVPTKGLSSDTKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKLKKRKERFGIVTSSA--GTGTTEDTEAKKRKRAERFGI 209
[Close]
BLAST of CIP29 vs. UniProt/SwissProt
Match: sp|Q498U4|SARNP_RAT (SAP domain-containing ribonucleoprotein OS=Rattus norvegicus OX=10116 GN=Sarnp PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 2.956e-14
Identity = 79/249 (31.73%), Postives = 120/249 (48.19%), Query Frame = 2 
Query:   56 DLTKLKVNDLRKKCKDLGLSITGNKSELISRIQDRKNEGGDESVLNEAELLGELDGSDSQVVSNVDEDLLLGDSTXXXXXXXXXXXXXXILQIDEPLSEPPVITDVEEPSAKIPKLDMQPIKETDKVLT-IDNSEEKKKQDRAARFGIITNDTEENKKLARAQRFGLDVSKSNG-----DVTVDIEKLKKREERFGVSVSDKLSKAADEEKKLKRAERFGVQTSIQVESVGGVNLNDDKKAVRAARFGL 784
            +L KLK+ +L+++C   GL   G K +LI+R+Q                    L+    +  +  D   +LGD T E + +           I+ P+ E       EEP  K+  +DM   K+  K+ + I  +E  + Q RA RF +  +   E+KK ARA RFG+    + G        V+++KLK+R +RFG++VS    K+ D+EK  KR ERFG+ TS      G     + KK  RA RFG+
Sbjct:    7 ELHKLKLAELKQECLARGLETKGIKQDLINRLQ------------------AYLEEHAEEEANEED---VLGDETEEEEPK----------PIELPVKE-------EEPPEKV--VDMASEKKVVKITSGIPQTE--RMQKRAERFNVPVSL--ESKKAARAARFGISSVPTKGLSSDTKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKLKKRKERFGIVTS--SAGTGTTEDTEAKKRKRAERFGI 209
[Close]
BLAST of CIP29 vs. UniProt/SwissProt
Match: sp|Q5R4V4|SARNP_PONAB (SAP domain-containing ribonucleoprotein OS=Pongo abelii OX=9601 GN=SARNP PE=2 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 2.245e-13
Identity = 77/248 (31.05%), Postives = 118/248 (47.58%), Query Frame = 2 
Query:   56 DLTKLKVNDLRKKCKDLGLSITGNKSELISRIQDRKNEGGDESVLNEAELLGELDGSDSQVVSNVDEDLLLGDSTXXXXXXXXXXXXXXILQIDEPLSEPPVITDVEEPSAKIPKLDMQPIKETDKVLTIDNSEEKKKQDRAARFGIITNDTEENKKLARAQRFGLDVSKSNG-----DVTVDIEKLKKREERFGVSVSDKLSKAADEEKKLKRAERFGVQTSIQVESVGGVNLNDDKKAVRAARFGL 784
            +L KLK+ +L+++C   GL   G K +LI R+Q                    L+    +  +  D   +LGD T E + +           I+ P+ E       EEP  K   +D+   K+  K+ T +  + ++ Q RA RF +  +   E+KK ARA RFG+    + G        V+++KLK+R +RFG++VS    K+ D+EK  KR ERFG+ TS      G     + KK  RA RFG+
Sbjct:    7 ELHKLKLAELKQECLARGLETKGIKQDLIHRLQ------------------AYLEEHAEEEANEED---VLGDETEEEETK----------PIELPVKE-------EEPPEKT--VDVAAEKKVVKI-TSEIPQTERMQKRAERFNVPVSL--ESKKAARAARFGISSVPTKGLSSDNKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKLKKRKERFGIVTS--SAGTGTTEDTEAKKRKRAERFGI 209
[Close]
BLAST of CIP29 vs. UniProt/SwissProt
Match: sp|P82979|SARNP_HUMAN (SAP domain-containing ribonucleoprotein OS=Homo sapiens OX=9606 GN=SARNP PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 2.245e-13
Identity = 77/248 (31.05%), Postives = 118/248 (47.58%), Query Frame = 2 
Query:   56 DLTKLKVNDLRKKCKDLGLSITGNKSELISRIQDRKNEGGDESVLNEAELLGELDGSDSQVVSNVDEDLLLGDSTXXXXXXXXXXXXXXILQIDEPLSEPPVITDVEEPSAKIPKLDMQPIKETDKVLTIDNSEEKKKQDRAARFGIITNDTEENKKLARAQRFGLDVSKSNG-----DVTVDIEKLKKREERFGVSVSDKLSKAADEEKKLKRAERFGVQTSIQVESVGGVNLNDDKKAVRAARFGL 784
            +L KLK+ +L+++C   GL   G K +LI R+Q                    L+    +  +  D   +LGD T E + +           I+ P+ E       EEP  K   +D+   K+  K+ T +  + ++ Q RA RF +  +   E+KK ARA RFG+    + G        V+++KLK+R +RFG++VS    K+ D+EK  KR ERFG+ TS      G     + KK  RA RFG+
Sbjct:    7 ELHKLKLAELKQECLARGLETKGIKQDLIHRLQ------------------AYLEEHAEEEANEED---VLGDETEEEETK----------PIELPVKE-------EEPPEKT--VDVAAEKKVVKI-TSEIPQTERMQKRAERFNVPVSL--ESKKAARAARFGISSVPTKGLSSDNKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKLKKRKERFGIVTS--SAGTGTTEDTEAKKRKRAERFGI 209
[Close]
BLAST of CIP29 vs. UniProt/SwissProt
Match: sp|O74871|YCW3_SCHPO (Uncharacterized protein C31H12.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC31H12.03c PE=1 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 3.532e-7
Identity = 58/227 (25.55%), Postives = 98/227 (43.17%), Query Frame = 2 
Query:   50 MEDLTKLKVNDLRKKCKDLGLSITGNKSELISRIQDRKNEGGDESVLNEAELLGELDGSDSQVVSNVDEDLLLGDSTXXXXXXXXXXXXXXILQIDEPLSEPPVITDVEEPSAKIPKLDMQPI------KETDKVLTIDNSEEKKKQDRAARFGIITNDTEENKKLARAQRFGLDVSKSNGDVTVDIEKLKKREERFGVSVSDKLSKAADEEKKLKRAERFGVQTSI 712
            M D   LKV +LR+K  + GLS  GNK+EL+SR+        + +  N A  LG+L        +  ++D+  GD                 ++ D       + TDV +P+    K    P       KE + +++ + S+  +           +   EE+++     +  +    S+ DV  + EKL +R +RFG+ V D      ++ KK  RA RFG+Q  +
Sbjct:    1 MSDYKSLKVAELREKLAEKGLSTAGNKAELVSRLTAATESNDENTSNNNATDLGDL--------APPEDDIDWGD-----------------MENDT------ISTDVNKPAEPESKETSAPAAAVEIEKENESIISKETSQAPE----------TSTGAEEHQETTEESKQSVSNEVSSPDVAKEQEKLIQRAKRFGIPVDD------EQIKKAARAARFGIQQPL 180
[Close]
BLAST of CIP29 vs. TrEMBL
Match: H9CXU0 (CIP29 OS=Schmidtea mediterranea OX=79327 PE=2 SV=1)

HSP 1 Score: 479.559 bits (1233), Expect = 1.450e-169
Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 2 
Query:   50 MEDLTKLKVNDLRKKCKDLGLSITGNKSELISRIQDRKNEGGDESVLNEAELLGELDGSDSQVVSNVDEDLLLGDSTXXXXXXXXXXXXXXILQIDEPLSEPPVITDVEEPSAKIPKLDMQPIKETDKVLTIDNSEEKKKQDRAARFGIITNDTEENKKLARAQRFGLDVSKSNGDVTVDIEKLKKREERFGVSVSDKLSKAADEEKKLKRAERFGVQTSIQVESVGGVNLNDDKKAVRAARFGLNTDEEKKKARAARFGN 832
            MEDLTKLKVNDLRKKCKDLGLSITGNKSELISRIQDRKNEGGDESVLNEAELLGELDGSDSQVVSNVDEDLLLGDSTSESKEEKNENNLSSILQIDEPLSEPPVITDVEEPSAKIPKLDMQPIKETDKVLTIDNSEEKKKQDRAARFGIITNDTEENKKLARAQRFGLDVSKSNGDVTVDIEKLKKREERFGVSVSDKLSKAADEEKKLKRAERFGVQTSIQVESVGGVNLNDDKKAVRAARFGLNTDEEKKKARAARFGN
Sbjct:    1 MEDLTKLKVNDLRKKCKDLGLSITGNKSELISRIQDRKNEGGDESVLNEAELLGELDGSDSQVVSNVDEDLLLGDSTSESKEEKNENNLSSILQIDEPLSEPPVITDVEEPSAKIPKLDMQPIKETDKVLTIDNSEEKKKQDRAARFGIITNDTEENKKLARAQRFGLDVSKSNGDVTVDIEKLKKREERFGVSVSDKLSKAADEEKKLKRAERFGVQTSIQVESVGGVNLNDDKKAVRAARFGLNTDEEKKKARAARFGN 261
[Close]
BLAST of CIP29 vs. TrEMBL
Match: A0A3Q0KI39 (SAP domain-containing protein OS=Schistosoma mansoni OX=6183 PE=4 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.178e-26
Identity = 109/300 (36.33%), Postives = 155/300 (51.67%), Query Frame = 2 
Query:   50 MEDLTKLKVNDLRKKCKDLGLSITGNKSELISRIQDRKNEGGDESVL----NEAELLGELDGSDSQVVSNVDEDLLLGDSTXXXXXXXXXXXXXXILQIDEPLSEPPVITDVEEPSAKIPKLDMQPIKET----DKVL----TIDNSEEKKKQD------------RAARFGIITNDTEENKKLARAQRFGLDVSKSNGDVTVD--------IEKLKKREERFGVSVSDKLSKAADEEKKLKRAERFGVQTSIQVESVGGVNLNDD-KKAVRAARFGLN-------TDEEKKKARAARFG 829
            +EDL KLK++DL+K CK+  L  TG K ELISRI +     G++ VL    +EAELLG+ +  DS  V+       +  ST+ + +  N+N   S L         PV+T  +    K P  ++ P K++    +KVL    T D+S +  K++            R  RF      +++ K LARA+RFGL +S +   V ++        +EKLKKR ERFGV+ S  L K  D E+K KR E+FG   S    S G   +ND+  K++RA +FGLN       +D EK   R ARFG
Sbjct:    8 VEDLHKLKLSDLKKICKENKLPSTGTKVELISRITEMH---GNKFVLLQPGDEAELLGDDEDGDSNHVN-------ISHSTTTTMDCSNDNGSPSGLNF-------PVVTANKTVGRKRPASELTPEKDSMTSGEKVLKVAHTTDDSHDNAKEEVTNLSDSERLVCRTKRFM-----SDDEKTLARAKRFGLPISNNINTVCLNNTSTKLDELEKLKKRAERFGVTTSKTLEKLTDLERKAKRLEKFGKPLS---SSSGNTQMNDELAKSIRAQKFGLNLSNNNSISDAEKLSKRQARFG 282
[Close]
BLAST of CIP29 vs. TrEMBL
Match: G4VN50 (SAP domain-containing protein OS=Schistosoma mansoni OX=6183 GN=Smp_078090.1 PE=4 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.061e-24
Identity = 108/300 (36.00%), Postives = 155/300 (51.67%), Query Frame = 2 
Query:   50 MEDLTKLKVNDLRKKCKDLGLSITGNKSELISRIQDRKNEGGDESVL----NEAELLGELDGSDSQVVSNVDEDLLLGDSTXXXXXXXXXXXXXXILQIDEPLSEPPVITDVEEPSAKIPKLDMQPIKET----DKVL----TIDNSEEKKKQD------------RAARFGIITNDTEENKKLARAQRFGLDVSKSNGDVTVD--------IEKLKKREERFGVSVSDKLSKAADEEKKLKRAERFGVQTSIQVESVGGVNLNDD-KKAVRAARFGLN-------TDEEKKKARAARFG 829
            +EDL KLK++DL+K CK+  L  TG K ELISRI +     G++ VL    +EAELLG+ +  DS  V+       +  ST+ + +  N+N   S L         PV+T  +    K P  ++ P K++    +KVL    T D+S +  K++            R  RF      +++ K LARA+RFGL +S +   V ++        +EKLKKR ERFGV+ S  L K  D E+K KR E+FG +      S G   +ND+  K++RA +FGLN       +D EK   R ARFG
Sbjct:    8 VEDLHKLKLSDLKKICKENKLPSTGTKVELISRITEMH---GNKFVLLQPGDEAELLGDDEDGDSNHVN-------ISHSTTTTMDCSNDNGSPSGLNF-------PVVTANKTVGRKRPASELTPEKDSMTSGEKVLKVAHTTDDSHDNAKEEVTNLSDSERLVCRTKRFM-----SDDEKTLARAKRFGLPISNNINTVCLNNTSTKLDELEKLKKRAERFGVTTSKTLEKLTDLERKAKRLEKFG-KPLSSSSSSGNTQMNDELAKSIRAQKFGLNLSNNNSISDAEKLSKRQARFG 284
[Close]
BLAST of CIP29 vs. TrEMBL
Match: C1LGG2 (DNA-binding SAP,domain-containing protein OS=Schistosoma japonicum OX=6182 GN=EWB00_003880 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.780e-23
Identity = 98/291 (33.68%), Postives = 143/291 (49.14%), Query Frame = 2 
Query:   50 MEDLTKLKVNDLRKKCKDLGLSITGNKSELISRIQDRKNEGGDESVL----NEAELLGELDGSDSQVVSNVDEDLLLGDSTXXXXXXXXXXXXXXILQIDEPLSEPPVITDVEEPSAKIPKLDMQPIKET---DKVLTIDNSEEKKKQDRAARFGIITNDTE------------ENKKLARAQRFGLDVSKSNGDVTV----DIEKLKKREERFGVSVSDKLSKAADEEKKLKRAERFGVQTSIQVESVGGVNLNDD-KKAVRAARFGLN-------TDEEKKKARAARFG 829
            +EDL KLK++DL+K CK+  LS TG K ELISRI +     G++ VL    +EAELLG+ +  DS  V     D +  ++ +                        PV++  +  S K P  ++ P K+    +K L I ++ E      +     + +D+E            E K LARA+RFGL ++  N +       ++EKLK+R ERFG + S  L    D E+K KR E+FG      V S G ++LND+  K++RA +FGL        +D EK   R ARFG
Sbjct:    9 IEDLHKLKLSDLKKICKENKLSSTGTKVELISRITEIH---GNKFVLLQPGDEAELLGDDEDGDSNNVDISHTDTMDCNNNASLNSVNF-----------------PVVSPAKNLSRKRPASELTPEKDLMKDEKALKIAHTIEDSHVSNSKEEMTMLSDSEHLTCRIKRFTTDEEKSLARAKRFGLPINSHNINTATSKSDELEKLKRRAERFGQTTSKTLEMINDLERKAKRLEKFGT----PVSSSGKIHLNDELAKSIRAQKFGLVLSSNDSLSDAEKLSRRQARFG 275
[Close]
BLAST of CIP29 vs. TrEMBL
Match: C1L4Y5 (DNA-binding SAP,domain-containing protein OS=Schistosoma japonicum OX=6182 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.053e-22
Identity = 97/291 (33.33%), Postives = 142/291 (48.80%), Query Frame = 2 
Query:   50 MEDLTKLKVNDLRKKCKDLGLSITGNKSELISRIQDRKNEGGDESVL----NEAELLGELDGSDSQVVSNVDEDLLLGDSTXXXXXXXXXXXXXXILQIDEPLSEPPVITDVEEPSAKIPKLDMQPIKET---DKVLTIDNSEEKKKQDRAARFGIITNDTE------------ENKKLARAQRFGLDVSKSNGDVTV----DIEKLKKREERFGVSVSDKLSKAADEEKKLKRAERFGVQTSIQVESVGGVNLNDD-KKAVRAARFGLN-------TDEEKKKARAARFG 829
            +EDL KLK++DL+K CK+  LS TG K ELISRI +     G++ VL    +EAELLG+ +  DS  V     D +  ++ +                        PV++  +  S K P  ++ P K+    +K L I ++ E      +     + +D+E            E K LARA+RFGL ++  N +       ++EKLK+R ERFG + S  L    D E+K KR E+FG      V S G ++LND+  K++RA +FGL        +D  K   R ARFG
Sbjct:    9 IEDLHKLKLSDLKKICKENKLSSTGTKVELISRITEIH---GNKFVLLQPGDEAELLGDDEDGDSNNVDISHTDTMDCNNNASLNSVNF-----------------PVVSPAKNLSRKRPASELTPEKDLMKDEKALKIAHTIEDSHASNSKEEMTMLSDSEHLTCRIKRFTTDEEKSLARAKRFGLPINSHNINTATSKSDELEKLKRRAERFGQTTSKTLEMINDLERKAKRLEKFGT----PVSSSGKIHLNDELAKSIRAQKFGLVLSSNDSLSDAGKLSRRQARFG 275
[Close]
BLAST of CIP29 vs. Ensembl Cavefish
Match: sarnp (SAP domain containing ribonucleoprotein [Source:NCBI gene;Acc:103027166])

HSP 1 Score: 73.9442 bits (180), Expect = 2.295e-15
Identity = 84/267 (31.46%), Postives = 118/267 (44.19%), Query Frame = 2 
Query:   56 DLTKLKVNDLRKKCKDLGLSITGNKSELISRIQDRKNEGGDESVLNEAELLGELDGSDSQVVSNVDEDLLLGDSTXXXXXXXXXXXXXXILQIDEPLSEPPVITDVEEPSAKIPKLDMQPIKETDKVLTIDNSEEKKKQDRAARFGIITNDTEENKKLARAQRFGLDVSKSN--------GDVTVDIEKLKKREERFGVSVSDKLSKAADEEKKLKRAERFGVQTSIQVESVGGVNLNDDKKAVRAARFGLNTDEEKKKARAARFGN 832
            +L KLK+ +L+++C   GL I GNK +LI+R+Q    E   E  +NE E+LGE     S                               +Q  E + EP                + +P K   K+ T  +S +++ Q RA RF +   +T +NKK ARA RFG+  + S             VD+E LKKR ERFG++VS    K  ++EK  KR ERFG+QT             +D +A             KK+ RA RFGN
Sbjct:    6 ELQKLKLAELKQECSLRGLDIKGNKGDLIARLQQYLEE--HEEDVNEEEVLGEFTEEAS-------------------------PKAEEAVQEQETVVEP----------------ETEPKKAVVKI-TAPSSGDERLQKRAERFNL--PETLDNKKAARAARFGIPATASAPSKGASAMSKTNVDVEVLKKRAERFGMNVSSVSKKVEEDEKLKKRKERFGIQTGAAAAG----AGAEDSEA-------------KKRKRAERFGN 209
[Close]
BLAST of CIP29 vs. Ensembl Sea Lamprey
Match: sarnp (SAP domain containing ribonucleoprotein [Source:ZFIN;Acc:ZDB-GENE-050522-161])

HSP 1 Score: 47.7506 bits (112), Expect = 8.740e-7
Identity = 57/145 (39.31%), Postives = 76/145 (52.41%), Query Frame = 2 
Query:  371 VEEPSAKIPKLDMQPIKETDKVLTIDNSEEKKKQDRAARFGIITNDTEENKKLARAQRFGLDVSKSNGDVT-------VDIEKLKKREERFGVSVSDKLSKAADEEKKLKRAERFGVQTSIQVESVGGVNLNDDKKAVRAARFGL 784
            VE+P+ K         K  D VLT   SE ++ Q RA RF +  N  E+ KK ARA RFG+  +++N  V+       VD  KL++R +RFGV+VS    K   E K  KR ERFGV T+    +     +   KK  RA RFG+
Sbjct:   94 VEKPAVK---------KVQDVVLT---SEAERLQTRAKRFNVEMN--EQAKKAARAARFGIVTTETNKAVSHRMTSVQVDTTKLQERAKRFGVNVSTVAQKIEVEGKLKKRKERFGVVTAAAAVATEDTEI---KKLKRAERFGI 221
[Close]
BLAST of CIP29 vs. Ensembl Nematostella
Match: EDO48904 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RHS5])

HSP 1 Score: 68.9366 bits (167), Expect = 3.158e-13
Identity = 92/281 (32.74%), Postives = 136/281 (48.40%), Query Frame = 2 
Query:   56 DLTKLKVNDLRKKCKDLGLSITGNKSELISRIQDRKNEGGDESVLNEAELLGELDGSDSQVVSNVDEDLLLGDST----XXXXXXXXXXXXXXILQIDEPLS------EPPVITDVEEPSAKIPKLDMQPIKETDKVLTIDN--SEEKKKQDRAARFGIITNDTEENKKLARAQRFGLDV----------SKSNGDVTVDIEKLKKREERFGVSVSDKLSKAADEEKKLKRAERFGVQTSIQVESVGGVNLNDDKKAVRAARFGLNTDEEKKKARAARFGN 832
            ++ KLKV +L+K+ +  GL++ GNKS+L +R+ +     G    L+E E   +++G D     + DED +L D +       +    E   SS L  DE  S      E P+  + +E  + I          T   LT+++  SE ++K  R  RFG     +E ++KLARA+RFG+++          + +     +D+ KLKKR ERFGV VS  +S   ++EK LKR ERFGV T                  V AA    +  E KKK RA RF N
Sbjct:    6 NVKKLKVAELKKELQQHGLTVKGNKSDLQARLTEFLQ--GQGVALHEGE---DVEGDDDLDNDDHDEDDVLADDSVDDLVAEESLSEEKKESSSLSADEVKSGKTEKIENPLPANGKEKKSSI----------TAAKLTVNSAASENERKLQRMKRFG--GPVSENDRKLARAERFGINLKETGKQDVNTTSTTQATPIDVNKLKKRAERFGV-VSPAVSNIVEKEKLLKRKERFGVTT------------------VAAA--TADPLEIKKKKRAERFSN 248
[Close]
BLAST of CIP29 vs. Ensembl Medaka
Match: sarnp (SAP domain containing ribonucleoprotein [Source:NCBI gene;Acc:101168041])

HSP 1 Score: 81.2629 bits (199), Expect = 8.326e-18
Identity = 86/257 (33.46%), Postives = 114/257 (44.36%), Query Frame = 2 
Query:   56 DLTKLKVNDLRKKCKDLGLSITGNKSELISRIQDRKNEGGDESVLNEAELLGELDGSDSQVVSNVDEDLLLGDSTXXXXXXXXXXXXXXILQIDEPLSEPPVITDVEEPSAKIPKLDMQ------PIKETDKVLTIDN--SEEKKKQDRAARFGIITNDTEENKKLARAQRFGLDVSKS-------NGDVTVDIEKLKKREERFGVSVSDKLSKAADEEKKLKRAERFGVQTSIQVESVGGVNLNDDKKAVRAARFG 781
            +L KLK+ +LR++C   GL   GNK ELI+R+Q         + L E E              +VD D +L + T                         P  T VE  S+   K D        P  E  KV+ I    S  ++ Q RA RF +    T E+KK  RA RFG   + +       N    VD+++LKKR ERFG++VS    K  ++EK  KR ERFG+ TS    S GG    + KK  RA RFG
Sbjct:   32 ELQKLKLAELRQECDARGLETKGNKGELIARLQ---------AYLEEHE-------------DDVDVDEVLAEDT-------------------------PEFTKVE--SSNSIKEDNHTETIAIPESEDKKVVKISPPLSAGERLQKRAERFNMPA--TAESKKALRAARFGSTTASNPTAGLVVNSKAAVDVDQLKKRAERFGMNVSSISQKIEEDEKLKKRKERFGILTSA---SPGGAEDAEAKKRKRAERFG 234
[Close]
BLAST of CIP29 vs. Planmine SMEST
Match: SMESG000073815.1 (SMESG000073815.1)

HSP 1 Score: 477.633 bits (1228), Expect = 2.997e-172
Identity = 260/261 (99.62%), Postives = 260/261 (99.62%), Query Frame = 2 
Query:   50 MEDLTKLKVNDLRKKCKDLGLSITGNKSELISRIQDRKNEGGDESVLNEAELLGELDGSDSQVVSNVDEDLLLGDSTXXXXXXXXXXXXXXILQIDEPLSEPPVITDVEEPSAKIPKLDMQPIKETDKVLTIDNSEEKKKQDRAARFGIITNDTEENKKLARAQRFGLDVSKSNGDVTVDIEKLKKREERFGVSVSDKLSKAADEEKKLKRAERFGVQTSIQVESVGGVNLNDDKKAVRAARFGLNTDEEKKKARAARFGN 832
            MEDLTKLKVNDLRKKCKDLGLSITGNKSELISRIQDRKNEGGDESVLNEAELLGELDGSDSQVVSNVDEDLLLGDSTSESKEEKNENNLSSILQIDEPLSEPPVITDVEEPSAKIPKLDMQPIKETDKVLTIDNSEEKKKQDRAARFGIITNDTEENKKLARAQRFGLDVSKSNGDVTVDIEKLKKREERFGVSVSDKLSKAADEEKKLKRAERFGVQTSIQVESVG VNLNDDKKAVRAARFGLNTDEEKKKARAARFGN
Sbjct:    1 MEDLTKLKVNDLRKKCKDLGLSITGNKSELISRIQDRKNEGGDESVLNEAELLGELDGSDSQVVSNVDEDLLLGDSTSESKEEKNENNLSSILQIDEPLSEPPVITDVEEPSAKIPKLDMQPIKETDKVLTIDNSEEKKKQDRAARFGIITNDTEENKKLARAQRFGLDVSKSNGDVTVDIEKLKKREERFGVSVSDKLSKAADEEKKLKRAERFGVQTSIQVESVGSVNLNDDKKAVRAARFGLNTDEEKKKARAARFGN 261
The following BLAST results are available for this feature:
BLAST of CIP29 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 4
Match NameE-valueIdentityDescription
SARNP4.676e-1431.05SAP domain containing ribonucleoprotein [Source:HG... [more]
SARNP4.676e-1431.05SAP domain containing ribonucleoprotein [Source:HG... [more]
SARNP3.839e-1230.08SAP domain containing ribonucleoprotein [Source:HG... [more]
AC023055.19.325e-1230.45novel protein[more]
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BLAST of CIP29 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of CIP29 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of CIP29 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
sarnp2.335e-1547.71SAP domain containing ribonucleoprotein [Source:ZF... [more]
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BLAST of CIP29 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2
Match NameE-valueIdentityDescription
sarnp7.670e-1442.86SAP domain containing ribonucleoprotein [Source:NC... [more]
sarnp1.650e-832.27SAP domain containing ribonucleoprotein [Source:NC... [more]
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BLAST of CIP29 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 2
Match NameE-valueIdentityDescription
Sarnp3.170e-1631.73SAP domain containing ribonucleoprotein [Source:MG... [more]
Sarnp4.382e-1240.71SAP domain containing ribonucleoprotein [Source:MG... [more]
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BLAST of CIP29 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q9D1J3|SARNP_MOUSE2.218e-1531.73SAP domain-containing ribonucleoprotein OS=Mus mus... [more]
sp|Q498U4|SARNP_RAT2.956e-1431.73SAP domain-containing ribonucleoprotein OS=Rattus ... [more]
sp|Q5R4V4|SARNP_PONAB2.245e-1331.05SAP domain-containing ribonucleoprotein OS=Pongo a... [more]
sp|P82979|SARNP_HUMAN2.245e-1331.05SAP domain-containing ribonucleoprotein OS=Homo sa... [more]
sp|O74871|YCW3_SCHPO3.532e-725.55Uncharacterized protein C31H12.03c OS=Schizosaccha... [more]
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BLAST of CIP29 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
H9CXU01.450e-169100.00CIP29 OS=Schmidtea mediterranea OX=79327 PE=2 SV=1[more]
A0A3Q0KI397.178e-2636.33SAP domain-containing protein OS=Schistosoma manso... [more]
G4VN501.061e-2436.00SAP domain-containing protein OS=Schistosoma manso... [more]
C1LGG22.780e-2333.68DNA-binding SAP,domain-containing protein OS=Schis... [more]
C1L4Y52.053e-2233.33DNA-binding SAP,domain-containing protein OS=Schis... [more]
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BLAST of CIP29 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
sarnp2.295e-1531.46SAP domain containing ribonucleoprotein [Source:NC... [more]
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BLAST of CIP29 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
sarnp8.740e-739.31SAP domain containing ribonucleoprotein [Source:ZF... [more]
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BLAST of CIP29 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of CIP29 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO489043.158e-1332.74Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of CIP29 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
sarnp8.326e-1833.46SAP domain containing ribonucleoprotein [Source:NC... [more]
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BLAST of CIP29 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000073815.12.997e-17299.62SMESG000073815.1[more]
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Cross References
External references for this transcript
DatabaseAccession
SmedGD GBrowseSMED30005428
GenBankAFD29611.1
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30005428 ID=SMED30005428|Name=CIP29|organism=Schmidtea mediterranea sexual|type=transcript|length=903bp
TATTATTGTATGCCGTTTGTTTTAATATTTATAGGTTTTTTGTGGTATAA
TGGAGGACTTGACGAAATTAAAGGTTAATGATCTGCGTAAAAAATGCAAG
GATTTAGGACTTTCAATTACTGGAAATAAGTCTGAACTTATCAGTCGTAT
TCAAGATCGTAAAAATGAAGGAGGAGATGAGTCAGTTTTAAACGAAGCTG
AGCTTTTGGGGGAATTAGATGGATCAGATTCACAAGTTGTGAGCAATGTA
GATGAAGATTTATTACTAGGTGATTCGACAAGTGAATCAAAAGAAGAGAA
AAATGAGAATAATCTAAGTTCAATTTTACAAATTGATGAACCATTATCAG
AACCTCCAGTTATTACTGATGTTGAAGAACCTTCTGCCAAAATTCCTAAG
TTAGATATGCAACCAATAAAAGAAACTGACAAAGTACTTACAATTGATAA
TAGTGAAGAAAAAAAAAAACAAGATCGTGCTGCTCGATTTGGAATTATTA
CTAATGATACCGAAGAAAATAAAAAACTTGCACGAGCTCAAAGATTCGGA
TTGGACGTTTCTAAAAGTAACGGAGATGTCACAGTTGATATTGAAAAGCT
AAAAAAAAGAGAGGAGCGATTTGGAGTATCCGTTAGCGATAAACTTAGCA
AAGCTGCTGATGAAGAAAAGAAACTAAAAAGGGCAGAAAGATTTGGAGTT
CAAACTTCTATTCAAGTAGAATCAGTTGGTGGTGTCAATTTAAATGACGA
TAAAAAAGCTGTCAGAGCGGCGAGATTTGGACTTAACACTGATGAAGAAA
AGAAAAAAGCTCGCGCTGCTAGATTCGGAAACTAATGTTATTTTAAATAT
TTCTTGTTGTAATTAATAAATAGTTCACAAAAAAAAGCTCGCGCTGCTAG
ATT
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protein sequence of SMED30005428-orf-1

>SMED30005428-orf-1 ID=SMED30005428-orf-1|Name=SMED30005428-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=262bp
MEDLTKLKVNDLRKKCKDLGLSITGNKSELISRIQDRKNEGGDESVLNEA
ELLGELDGSDSQVVSNVDEDLLLGDSTSESKEEKNENNLSSILQIDEPLS
EPPVITDVEEPSAKIPKLDMQPIKETDKVLTIDNSEEKKKQDRAARFGII
TNDTEENKKLARAQRFGLDVSKSNGDVTVDIEKLKKREERFGVSVSDKLS
KAADEEKKLKRAERFGVQTSIQVESVGGVNLNDDKKAVRAARFGLNTDEE
KKKARAARFGN*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000429neoblast
PLANA:0002032epidermal cell
PLANA:0002109X1 cell
PLANA:0003116parenchymal cell
Vocabulary: INTERPRO
TermDefinition
IPR036361SAP_dom_sf
IPR003034SAP_dom
Vocabulary: cellular component
TermDefinition
GO:0019013viral nucleocapsid
GO:0030529intracellular ribonucleoprotein complex
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003034SAP domainSMARTSM00513sap_9coord: 4..38
e-value: 3.8E-9
score: 46.4
IPR003034SAP domainPFAMPF02037SAPcoord: 4..36
e-value: 4.2E-12
score: 45.5
IPR003034SAP domainPROSITEPS50800SAPcoord: 4..38
score: 11.684
IPR036361SAP domain superfamilyGENE3DG3DSA:1.10.720.30coord: 2..46
e-value: 2.1E-10
score: 42.1
IPR036361SAP domain superfamilySUPERFAMILYSSF68906SAP domaincoord: 2..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..101
NoneNo IPR availablePANTHERPTHR46551:SF1SAP DOMAIN-CONTAINING RIBONUCLEOPROTEINcoord: 1..220
NoneNo IPR availablePANTHERPTHR46551FAMILY NOT NAMEDcoord: 1..220