CAP-Gly domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30005421 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 12
Homology
BLAST of CAP-Gly domain-containing protein vs. Ensembl Zebrafish
Match: si:ch211-175f12.2 (si:ch211-175f12.2 [Source:ZFIN;Acc:ZDB-GENE-110411-220]) HSP 1 Score: 64.3142 bits (155), Expect = 1.452e-10 Identity = 29/85 (34.12%), Postives = 50/85 (58.82%), Query Frame = 1 Query: 2173 FTPKVASDLHLDDVVKFVRPGGKMATGTVCFIGHLPGRSEVCVGLEL-GEEAGKHDGLFEGHRYFQCRKNRGVFISFHKIILAYK 2424 F P DL V+ + P G++ TGT+ ++G++ + +G+EL + G+HDG +EG RYF C G F+ F K+++A++ Sbjct: 220 FVPHSPMDLKTGHRVRIMLPSGRICTGTLRYLGNMHNSPDHYLGVELEMADNGQHDGTYEGQRYFDCDPGYGAFVPFSKLLMAWE 304
BLAST of CAP-Gly domain-containing protein vs. Ensembl Zebrafish
Match: si:ch211-175f12.2 (si:ch211-175f12.2 [Source:ZFIN;Acc:ZDB-GENE-110411-220]) HSP 1 Score: 63.1586 bits (152), Expect = 1.636e-10 Identity = 29/85 (34.12%), Postives = 50/85 (58.82%), Query Frame = 1 Query: 2173 FTPKVASDLHLDDVVKFVRPGGKMATGTVCFIGHLPGRSEVCVGLEL-GEEAGKHDGLFEGHRYFQCRKNRGVFISFHKIILAYK 2424 F P DL V+ + P G++ TGT+ ++G++ + +G+EL + G+HDG +EG RYF C G F+ F K+++A++ Sbjct: 147 FVPHSPMDLKTGHRVRIMLPSGRICTGTLRYLGNMHNSPDHYLGVELEMADNGQHDGTYEGQRYFDCDPGYGAFVPFSKLLMAWE 231
BLAST of CAP-Gly domain-containing protein vs. Ensembl Zebrafish
Match: CABZ01072096.1 (pep chromosome:GRCz11:10:44408675:44411032:-1 gene:ENSDARG00000079483.4 transcript:ENSDART00000111509.4 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CABZ01072096.1) HSP 1 Score: 50.8322 bits (120), Expect = 3.621e-6 Identity = 32/77 (41.56%), Postives = 40/77 (51.95%), Query Frame = 1 Query: 2182 KVASDLHLDDVVKFVRPGGKMATGTVCFIGHLP-GRSEVCVGLELGEEAGKHDGLFEGHRYFQCRKNRGVFISFHKI 2409 K+ +L L D V GG A G V F+G + E C G+EL E GK+DG G RYFQC G+F HK+ Sbjct: 171 KIQRELKLGDRVLV---GGSKA-GVVRFLGETDFAKGEWC-GVELDEPLGKNDGAVAGGRYFQCLPKYGLFAPTHKV 242
BLAST of CAP-Gly domain-containing protein vs. Ensembl Xenopus
Match: ENSXETT00000016691.1 (uncharacterized LOC100495307 [Source:NCBI gene;Acc:100495307]) HSP 1 Score: 109.768 bits (273), Expect = 1.472e-24 Identity = 53/102 (51.96%), Postives = 71/102 (69.61%), Query Frame = 1 Query: 2134 TENYTYP-----PRYEYSFTPKVASDLHLDDVVKFVRPGGKMATGTVCFIGHLPGRSEVCVGLEL-GEEAGKHDGLFEGHRYFQCRKNRGVFISFHKIILAY 2421 TE+ T P PR F PK +DL + D+VKF RP GK++ GT+ + G LPGR EV +G+EL G E GKHDG+F+G RYF C+ N+GVF++F KII+A+ Sbjct: 378 TESSTRPSALVLPRR--PFAPKSIADLKVGDLVKFSRPAGKISKGTIQYKGCLPGRVEVYLGVELEGSEVGKHDGIFQGTRYFLCKPNKGVFVNFSKIIMAW 477
BLAST of CAP-Gly domain-containing protein vs. Ensembl Xenopus
Match: ENSXETT00000016706.1 (uncharacterized LOC100495307 [Source:NCBI gene;Acc:100495307]) HSP 1 Score: 110.923 bits (276), Expect = 2.176e-24 Identity = 53/102 (51.96%), Postives = 71/102 (69.61%), Query Frame = 1 Query: 2134 TENYTYP-----PRYEYSFTPKVASDLHLDDVVKFVRPGGKMATGTVCFIGHLPGRSEVCVGLEL-GEEAGKHDGLFEGHRYFQCRKNRGVFISFHKIILAY 2421 TE+ T P PR F PK +DL + D+VKF RP GK++ GT+ + G LPGR EV +G+EL G E GKHDG+F+G RYF C+ N+GVF++F KII+A+ Sbjct: 632 TESSTRPSALVLPRR--PFAPKSIADLKVGDLVKFSRPAGKISKGTIQYKGCLPGRVEVYLGVELEGSEVGKHDGIFQGTRYFLCKPNKGVFVNFSKIIMAW 731
BLAST of CAP-Gly domain-containing protein vs. TrEMBL
Match: K1PSP0 (CAP-Gly domain-containing linker protein 3 OS=Crassostrea gigas OX=29159 GN=CGI_10008448 PE=4 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 1.613e-24 Identity = 48/83 (57.83%), Postives = 69/83 (83.13%), Query Frame = 1 Query: 2173 FTPKVASDLHLDDVVKFVRPGGKMATGTVCFIGHLPGRSEVCVGLELGEEAGKHDGLFEGHRYFQCRKNRGVFISFHKIILAY 2421 F+P+ DL+L+DVVKF R GGK++ GTV F+GHLPGRS+ +G+EL +E GKHDG FEG RYF+C+ N+GVF++F+K+++A+ Sbjct: 1505 FSPRSPGDLNLEDVVKFSRAGGKLSQGTVKFVGHLPGRSDAYLGVELDKEDGKHDGKFEGMRYFRCKPNKGVFVAFNKVVMAW 1587
BLAST of CAP-Gly domain-containing protein vs. TrEMBL
Match: A0A210PHN7 (Restin-like OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT07661 PE=4 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.647e-24 Identity = 47/83 (56.63%), Postives = 69/83 (83.13%), Query Frame = 1 Query: 2173 FTPKVASDLHLDDVVKFVRPGGKMATGTVCFIGHLPGRSEVCVGLELGEEAGKHDGLFEGHRYFQCRKNRGVFISFHKIILAY 2421 F+P+ D+HL+DVVKF R GGK++ GTV F+GHLPGR++V +G+EL +E GKHDG FE RYF+C+ N+GVF++F+K+++A+ Sbjct: 1894 FSPRTPGDIHLEDVVKFSRQGGKLSQGTVKFVGHLPGRNDVYLGVELDKEEGKHDGTFESARYFKCKPNKGVFVAFNKVVMAW 1976
BLAST of CAP-Gly domain-containing protein vs. TrEMBL
Match: A0A2C9LH93 (CAP-Gly domain-containing protein OS=Biomphalaria glabrata OX=6526 GN=106051307 PE=4 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.206e-22 Identity = 45/83 (54.22%), Postives = 65/83 (78.31%), Query Frame = 1 Query: 2173 FTPKVASDLHLDDVVKFVRPGGKMATGTVCFIGHLPGRSEVCVGLELGEEAGKHDGLFEGHRYFQCRKNRGVFISFHKIILAY 2421 F P+ +DL +DVVKF R GGK+ G V ++GHLPGRSE +G+EL ++ GKHDG FEG RYF+C+ N+GVF++F+K+++A+ Sbjct: 1109 FAPRSIADLRNEDVVKFSRVGGKLTQGVVKYVGHLPGRSEAYLGVELDKDEGKHDGTFEGIRYFKCKPNKGVFVAFNKVVMAW 1191
BLAST of CAP-Gly domain-containing protein vs. TrEMBL
Match: A0A2C9LHY3 (CAP-Gly domain-containing protein OS=Biomphalaria glabrata OX=6526 GN=106051307 PE=4 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.313e-22 Identity = 45/83 (54.22%), Postives = 65/83 (78.31%), Query Frame = 1 Query: 2173 FTPKVASDLHLDDVVKFVRPGGKMATGTVCFIGHLPGRSEVCVGLELGEEAGKHDGLFEGHRYFQCRKNRGVFISFHKIILAY 2421 F P+ +DL +DVVKF R GGK+ G V ++GHLPGRSE +G+EL ++ GKHDG FEG RYF+C+ N+GVF++F+K+++A+ Sbjct: 1092 FAPRSIADLRNEDVVKFSRVGGKLTQGVVKYVGHLPGRSEAYLGVELDKDEGKHDGTFEGIRYFKCKPNKGVFVAFNKVVMAW 1174
BLAST of CAP-Gly domain-containing protein vs. TrEMBL
Match: A0A1I8IZN2 (CAP-Gly domain-containing protein OS=Macrostomum lignano OX=282301 PE=4 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 1.322e-22 Identity = 43/85 (50.59%), Postives = 66/85 (77.65%), Query Frame = 1 Query: 2173 FTPKVASDLHLDDVVKFVRPGGKMATGTVCFIGHLPGRSEVCVGLELGEEAGKHDGLFEGHRYFQCRKNRGVFISFHKIILAYKS 2427 F PK A+D+ D+VKF R GG+++ G V F+G LPGR++ VG+EL +E GKHDG+++G RYFQC+ +GVF++F+K+I+ Y++ Sbjct: 140 FAPKQAADIRSGDLVKFTRYGGRISKGLVHFVGRLPGRTDYYVGIELDQEEGKHDGVYDGRRYFQCKPRKGVFVAFNKLIMCYQA 224
BLAST of CAP-Gly domain-containing protein vs. Ensembl Cavefish
Match: si:ch211-175f12.2 (uncharacterized LOC103030656 [Source:NCBI gene;Acc:103030656]) HSP 1 Score: 65.0846 bits (157), Expect = 6.135e-11 Identity = 30/85 (35.29%), Postives = 51/85 (60.00%), Query Frame = 1 Query: 2173 FTPKVASDLHLDDVVKFVRPGGKMATGTVCFIGHLPGRSEVCVGLELG-EEAGKHDGLFEGHRYFQCRKNRGVFISFHKIILAYK 2424 F P DL V+ + P G+++TGT+ ++G L G E+ +G+EL E G+ G +EG YF C+ G F++F K+++A++ Sbjct: 213 FVPHSPMDLQPGHRVRIMLPSGRISTGTLRYLGPLQGLPEMHLGVELELAENGQQTGTYEGQFYFDCKPGYGAFVAFSKLLMAWE 297
BLAST of CAP-Gly domain-containing protein vs. Ensembl Cavefish
Match: cyldl (cylindromatosis (turban tumor syndrome), like [Source:ZFIN;Acc:ZDB-GENE-131127-190]) HSP 1 Score: 55.0694 bits (131), Expect = 2.609e-7 Identity = 24/48 (50.00%), Postives = 33/48 (68.75%), Query Frame = 1 Query: 2251 GTVCFIGHLPGRSEVCVGLELGEEAGKHDGLFEGHRYFQCRKNRGVFI 2394 GTV +IGHLP ++++ GLEL E+ G +DG F RYF C RG+F+ Sbjct: 282 GTVRWIGHLPEKTDLMAGLELEEDWGVNDGTFRNDRYFFCPPKRGIFV 329
BLAST of CAP-Gly domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000004647.1 (pep scaffold:Pmarinus_7.0:GL484285:5077:12891:1 gene:ENSPMAG00000004232.1 transcript:ENSPMAT00000004647.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 50.447 bits (119), Expect = 1.277e-6 Identity = 29/73 (39.73%), Postives = 38/73 (52.05%), Query Frame = 1 Query: 2194 DLHLDDVVKFVRPGGKMATGTVCFIGHLP-GRSEVCVGLELGEEAGKHDGLFEGHRYFQCRKNRGVFISFHKI 2409 DL + D V G G V F+G + E C G+EL E GK+DG G RYFQC++ G+F HK+ Sbjct: 190 DLKMGDRVLV----GGTKAGVVRFVGETDFAKGEWC-GVELDEPLGKNDGAVAGTRYFQCQQRYGLFAPIHKV 257
BLAST of CAP-Gly domain-containing protein vs. Ensembl Sea Lamprey
Match: si:dkeyp-47f9.4 (si:dkeyp-47f9.4 [Source:ZFIN;Acc:ZDB-GENE-131126-9]) HSP 1 Score: 49.6766 bits (117), Expect = 2.536e-6 Identity = 24/53 (45.28%), Postives = 29/53 (54.72%), Query Frame = 1 Query: 2236 GKMATGTVCFIGHLPGRSEVCVGLELGEEAGKHDGLFEGHRYFQCRKNRGVFI 2394 G GTV F+G + + +GLEL GKHDG GHRYF CR GV + Sbjct: 585 GTGEMGTVRFVGEVGFAAGTWLGLELRAPRGKHDGAVGGHRYFSCRPGCGVMV 637
BLAST of CAP-Gly domain-containing protein vs. Ensembl Nematostella
Match: EDO30311 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T153]) HSP 1 Score: 83.1889 bits (204), Expect = 3.324e-16 Identity = 33/83 (39.76%), Postives = 51/83 (61.45%), Query Frame = 1 Query: 2173 FTPKVASDLHLDDVVKFVRPGGKMATGTVCFIGHLPGRSEVCVGLELGEEAGKHDGLFEGHRYFQCRKNRGVFISFHKIILAY 2421 F P D+ L V R G + G V ++G LP R++ +G+EL GKHDG F G R+F+C+ NRG+F+S++K+++ Y Sbjct: 1180 FAPNSPQDIQLGMRVLVTRTRGNVGRGVVKYVGSLPDRTDTYIGVELDSGEGKHDGSFGGKRFFRCKPNRGIFVSYNKVVMCY 1262
BLAST of CAP-Gly domain-containing protein vs. Ensembl Nematostella
Match: EDO33600 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SRR5]) HSP 1 Score: 48.1358 bits (113), Expect = 9.414e-6 Identity = 28/75 (37.33%), Postives = 40/75 (53.33%), Query Frame = 1 Query: 2188 ASDLHLDDVVKFVRPGGKMATGTVCFIGHLPGRSEVCVGLELGEEAGKHDGLFEGHRYFQCRKNRGVFISFHKII 2412 +S L + D + V G K+ GT+ ++G G+EL E GK+DG G RYFQC + G+F HK+I Sbjct: 90 SSSLEIGD--RVVVSGNKI--GTLRYVGTTEFAKGEWAGVELDEPLGKNDGAVAGTRYFQCIQGYGLFAPVHKVI 160
BLAST of CAP-Gly domain-containing protein vs. Ensembl Medaka
Match: cyldl (ubiquitin carboxyl-terminal hydrolase CYLD [Source:NCBI gene;Acc:101168449]) HSP 1 Score: 51.2174 bits (121), Expect = 4.221e-6 Identity = 27/69 (39.13%), Postives = 38/69 (55.07%), Query Frame = 1 Query: 2200 HLD--DVVKFVRPGGKMATGTVCFIGHLPGRSEVCVGLELGEEAGKHDGLFEGHRYFQCRKNRGVFISF 2400 HLD +V+ G + G + +IG LP R E+ GLEL E+ G DG F+G R+F C R +F+ Sbjct: 290 HLDVNSMVEVTLGAGNLY-GIIRWIGKLPEREEIMAGLELEEDRGVSDGTFKGVRFFVCPNKRALFVKL 357
BLAST of CAP-Gly domain-containing protein vs. Ensembl Medaka
Match: cyldl (ubiquitin carboxyl-terminal hydrolase CYLD [Source:NCBI gene;Acc:101168449]) HSP 1 Score: 51.2174 bits (121), Expect = 4.685e-6 Identity = 27/69 (39.13%), Postives = 38/69 (55.07%), Query Frame = 1 Query: 2200 HLD--DVVKFVRPGGKMATGTVCFIGHLPGRSEVCVGLELGEEAGKHDGLFEGHRYFQCRKNRGVFISF 2400 HLD +V+ G + G + +IG LP R E+ GLEL E+ G DG F+G R+F C R +F+ Sbjct: 290 HLDVNSMVEVTLGAGNLY-GIIRWIGKLPEREEIMAGLELEEDRGVSDGTFKGVRFFVCPNKRALFVKL 357
BLAST of CAP-Gly domain-containing protein vs. Ensembl Medaka
Match: cyldl (ubiquitin carboxyl-terminal hydrolase CYLD [Source:NCBI gene;Acc:101168449]) HSP 1 Score: 51.2174 bits (121), Expect = 4.685e-6 Identity = 27/69 (39.13%), Postives = 38/69 (55.07%), Query Frame = 1 Query: 2200 HLD--DVVKFVRPGGKMATGTVCFIGHLPGRSEVCVGLELGEEAGKHDGLFEGHRYFQCRKNRGVFISF 2400 HLD +V+ G + G + +IG LP R E+ GLEL E+ G DG F+G R+F C R +F+ Sbjct: 290 HLDVNSMVEVTLGAGNLY-GIIRWIGKLPEREEIMAGLELEEDRGVSDGTFKGVRFFVCPNKRALFVKL 357
BLAST of CAP-Gly domain-containing protein vs. Ensembl Medaka
Match: dctn1a (dynactin subunit 1 [Source:NCBI gene;Acc:101162870]) HSP 1 Score: 50.447 bits (119), Expect = 8.459e-6 Identity = 27/67 (40.30%), Postives = 36/67 (53.73%), Query Frame = 1 Query: 2209 DVVKFVRPGGKMATGTVCFIGHLPGRSEVCVGLELGEEAGKHDGLFEGHRYFQCRKNRGVFISFHKI 2409 D+ V GK GTV +IG S VG+ L E GK+DG +G RYF C +N G+F+ +I Sbjct: 10 DIGSVVEVTGKGQRGTVAYIGTTLFASGKWVGVILDEPKGKNDGTVQGKRYFTCEENHGIFVRQSQI 76
BLAST of CAP-Gly domain-containing protein vs. Ensembl Medaka
Match: dctn1a (dynactin subunit 1 [Source:NCBI gene;Acc:101162870]) HSP 1 Score: 50.447 bits (119), Expect = 9.258e-6 Identity = 31/94 (32.98%), Postives = 46/94 (48.94%), Query Frame = 1 Query: 2143 YTYPPRYEYSFTPKVASDLHLDD-----VVKFVRPGGKMATGTVCFIGHLPGRSEVCVGLELGEEAGKHDGLFEGHRYFQCRKNRGVFISFHKI 2409 ++Y PR K++S ++ + V GK GTV +IG S VG+ L E GK+DG +G RYF C +N G+F+ +I Sbjct: 7 HSYTPRLTSPLISKMSSAGSVESGKPPKIGSVVEVTGKGQRGTVAYIGTTLFASGKWVGVILDEPKGKNDGTVQGKRYFTCEENHGIFVRQSQI 100
BLAST of CAP-Gly domain-containing protein vs. Planmine SMEST
Match: SMESG000006189.1 (SMESG000006189.1) HSP 1 Score: 1309.28 bits (3387), Expect = 0.000e+0 Identity = 762/762 (100.00%), Postives = 762/762 (100.00%), Query Frame = 1 Query: 145 MSLPENYVTVSHHNFSPIDENRNYSSLPTSGRLSESKIERNVDDFXXXXXXXXXXXXXXXXXSDSITLKENSRHSSLLFDNESEIPIDLEDENIRPSIHHDHNINASREVSNHSKTPILDLMNDQVIKSPRVSTVNSIENNDIQNENDHEKIATPTIKFTKNSNHSTNDSTGKNDDKFHEKSSDYQEFVLKLTEMSSLLLQKDDEIKKLSQKLIEIETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEEKNKIPKGVSMENSIEILNVSLEQENQSNLDTKNNPNLSNVNPDGNENLKSVSIDNFTIDRDELTPDIRKKLGDLESEVRRLQQANVDSILTLQKLEDNNASSGHLSNFTAINQLLVDHNLLKEELQQLKWDHAKLTQVGLLAEEISQLKKDMKFLKNYTKMSSKSLNHLPTSSIYNRHVKDTIDSKIKDRQIFVSNIPDSNGNSNYIYQKLQSQRKPMAETPSIHKMLKSSIESLESPYHITCQNIQHSVPFSGGPTYRARKVSDSSSVLVEDIKPKSWIQPIPKSYNHSYQLLPNELSSPFNDCYNNKDFDAQXXXXXXXXXXXXXEKSEDNWQSTNKNYNENNGDFLSTLENESSEVSTVKNTENYTYPPRYEYSFTPKVASDLHLDDVVKFVRPGGKMATGTVCFIGHLPGRSEVCVGLELGEEAGKHDGLFEGHRYFQCRKNRGVFISFHKIILAYKSH 2430 MSLPENYVTVSHHNFSPIDENRNYSSLPTSGRLSESKIERNVDDFLNKIALNNNLINDIENNSDSITLKENSRHSSLLFDNESEIPIDLEDENIRPSIHHDHNINASREVSNHSKTPILDLMNDQVIKSPRVSTVNSIENNDIQNENDHEKIATPTIKFTKNSNHSTNDSTGKNDDKFHEKSSDYQEFVLKLTEMSSLLLQKDDEIKKLSQKLIEIETKNKSRKNSSSSSSSSSSSSDESDKSSKEKPILKKNKKEKSKDKNETKKNKKEKENSKDKSETKKQSAKKDKKMKISKSNEEKNKIPKGVSMENSIEILNVSLEQENQSNLDTKNNPNLSNVNPDGNENLKSVSIDNFTIDRDELTPDIRKKLGDLESEVRRLQQANVDSILTLQKLEDNNASSGHLSNFTAINQLLVDHNLLKEELQQLKWDHAKLTQVGLLAEEISQLKKDMKFLKNYTKMSSKSLNHLPTSSIYNRHVKDTIDSKIKDRQIFVSNIPDSNGNSNYIYQKLQSQRKPMAETPSIHKMLKSSIESLESPYHITCQNIQHSVPFSGGPTYRARKVSDSSSVLVEDIKPKSWIQPIPKSYNHSYQLLPNELSSPFNDCYNNKDFDAQSVDSYVSVTTSVTEKSEDNWQSTNKNYNENNGDFLSTLENESSEVSTVKNTENYTYPPRYEYSFTPKVASDLHLDDVVKFVRPGGKMATGTVCFIGHLPGRSEVCVGLELGEEAGKHDGLFEGHRYFQCRKNRGVFISFHKIILAYKSH Sbjct: 1 MSLPENYVTVSHHNFSPIDENRNYSSLPTSGRLSESKIERNVDDFLNKIALNNNLINDIENNSDSITLKENSRHSSLLFDNESEIPIDLEDENIRPSIHHDHNINASREVSNHSKTPILDLMNDQVIKSPRVSTVNSIENNDIQNENDHEKIATPTIKFTKNSNHSTNDSTGKNDDKFHEKSSDYQEFVLKLTEMSSLLLQKDDEIKKLSQKLIEIETKNKSRKNSSSSSSSSSSSSDESDKSSKEKPILKKNKKEKSKDKNETKKNKKEKENSKDKSETKKQSAKKDKKMKISKSNEEKNKIPKGVSMENSIEILNVSLEQENQSNLDTKNNPNLSNVNPDGNENLKSVSIDNFTIDRDELTPDIRKKLGDLESEVRRLQQANVDSILTLQKLEDNNASSGHLSNFTAINQLLVDHNLLKEELQQLKWDHAKLTQVGLLAEEISQLKKDMKFLKNYTKMSSKSLNHLPTSSIYNRHVKDTIDSKIKDRQIFVSNIPDSNGNSNYIYQKLQSQRKPMAETPSIHKMLKSSIESLESPYHITCQNIQHSVPFSGGPTYRARKVSDSSSVLVEDIKPKSWIQPIPKSYNHSYQLLPNELSSPFNDCYNNKDFDAQSVDSYVSVTTSVTEKSEDNWQSTNKNYNENNGDFLSTLENESSEVSTVKNTENYTYPPRYEYSFTPKVASDLHLDDVVKFVRPGGKMATGTVCFIGHLPGRSEVCVGLELGEEAGKHDGLFEGHRYFQCRKNRGVFISFHKIILAYKSH 762
BLAST of CAP-Gly domain-containing protein vs. Planmine SMEST
Match: SMESG000011534.1 (SMESG000011534.1) HSP 1 Score: 120.168 bits (300), Expect = 5.307e-28 Identity = 45/84 (53.57%), Postives = 69/84 (82.14%), Query Frame = 1 Query: 2170 SFTPKVASDLHLDDVVKFVRPGGKMATGTVCFIGHLPGRSEVCVGLELGEEAGKHDGLFEGHRYFQCRKNRGVFISFHKIILAY 2421 +F P+ SD+ ++DVVKF+R GG+++ G V FIGHLP R+++ +G+EL E GKH+G+++G RYFQCR+N+GVF++F+KII+ Y Sbjct: 494 AFAPRAGSDISINDVVKFIRQGGRISKGLVHFIGHLPKRNDIYLGIELEIEEGKHNGIYDGVRYFQCRENKGVFVAFNKIIMVY 577
BLAST of CAP-Gly domain-containing protein vs. Planmine SMEST
Match: SMESG000031119.1 (SMESG000031119.1) HSP 1 Score: 79.337 bits (194), Expect = 5.087e-15 Identity = 29/77 (37.66%), Postives = 52/77 (67.53%), Query Frame = 1 Query: 2194 DLHLDDVVKFVRPGGKMATGTVCFIGHLPGRSEVCVGLELGEEAGKHDGLFEGHRYFQCRKNRGVFISFHKIILAYK 2424 ++ + D+V+F R ++ G V FIG LP + ++ +GL+L + G +DG + G RYF+ KNRG+F+SF ++++ +K Sbjct: 438 NIDVGDIVRFSRETCRVCLGIVKFIGDLPNQKDIFLGLKLERDDGLNDGTYNGQRYFEFEKNRGIFVSFQRVMMIFK 514
BLAST of CAP-Gly domain-containing protein vs. Planmine SMEST
Match: SMESG000031119.1 (SMESG000031119.1) HSP 1 Score: 78.5666 bits (192), Expect = 5.825e-15 Identity = 30/83 (36.14%), Postives = 53/83 (63.86%), Query Frame = 1 Query: 2176 TPKVASDLHLDDVVKFVRPGGKMATGTVCFIGHLPGRSEVCVGLELGEEAGKHDGLFEGHRYFQCRKNRGVFISFHKIILAYK 2424 P ++ + D+V+F R ++ G V FIG LP + ++ +GL+L + G +DG + G RYF+ KNRG+F+SF ++++ +K Sbjct: 346 VPVHPCNIDVGDIVRFSRETCRVCLGIVKFIGDLPNQKDIFLGLKLERDDGLNDGTYNGQRYFEFEKNRGIFVSFQRVMMIFK 428
BLAST of CAP-Gly domain-containing protein vs. Planmine SMEST
Match: SMESG000031119.1 (SMESG000031119.1) HSP 1 Score: 56.6102 bits (135), Expect = 6.364e-8 Identity = 24/70 (34.29%), Postives = 41/70 (58.57%), Query Frame = 1 Query: 2176 TPKVASDLHLDDVVKFVRPGGKMATGTVCFIGHLPGRSEVCVGLELGEEAGKHDGLFEGHRYFQ---CRK 2376 P ++ + D+V+F R ++ G V FIG LP + ++ +GL+L + G +DG + G RYF+ C+K Sbjct: 476 VPVHPCNIDVGDIVRFSRETCRVCLGIVKFIGDLPNQKDIFLGLKLERDDGLNDGTYNGQRYFELKICKK 545 The following BLAST results are available for this feature:
BLAST of CAP-Gly domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of CAP-Gly domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of CAP-Gly domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of CAP-Gly domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 3
BLAST of CAP-Gly domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 2
BLAST of CAP-Gly domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of CAP-Gly domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of CAP-Gly domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of CAP-Gly domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 2
BLAST of CAP-Gly domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 2
BLAST of CAP-Gly domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of CAP-Gly domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 2
BLAST of CAP-Gly domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of CAP-Gly domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30005421 ID=SMED30005421|Name=CAP-Gly domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=2516bpback to top protein sequence of SMED30005421-orf-1 >SMED30005421-orf-1 ID=SMED30005421-orf-1|Name=SMED30005421-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=779bp MKLIYFISTIFIYLFNMSLPENYVTVSHHNFSPIDENRNYSSLPTSGRLSback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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