SMED30005411

Overview
NameSMED30005411
Smed IDSMED30005411
Length (bp)2659
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30005411 (SMED30005411) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30005411 (SMED30005411) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30005411 (SMED30005411) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30005411 (SMED30005411) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30005411

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
prepharyngeal regionSMED30005411h1SMcG0019424 dd_Smed_v6_47500_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30005411 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.001468:15874..18531 +13263
Homology
[Close]
BLAST of SMED30005411 vs. TrEMBL
Match: A0A0R3X0N7 (Bravo_FIGEY domain-containing protein OS=Hydatigena taeniaeformis OX=6205 GN=TTAC_LOCUS6697 PE=4 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 6.342e-19
Identity = 152/701 (21.68%), Postives = 274/701 (39.09%), Query Frame = 2 
Query:   86 PAVKLRKTE----------YTVRNEKLSIDAYLSQQIL--VTLIGKQP--FQFFCQTYPLEIQFIVIKAEFCWKLFLSDSEKCSTINEPKQSISLGFEKFAIEFDNQTGFIVSGNSNF----LRGFYFCRLENQFDSIVSNNIEIHNIHYYRS--LIKESFKPNTDLNSQPIKTVADSHLLDFGIEINDTYKSIPKWIFQKIEKSIKWRICPVNYDDFTYSWAECFKNEILLQPNVDYVQFNNFSIHLFDHVYTKYARFVLESFSVIEKGPW------NKFRIIGSVEMLNSLSGDIIKYSIDNEHLYFREGFSNFFEYKLSAAYTGDVENFK--WEKGLSSLSAKFVQTERELFFPKLVTRDLEGIYYLKLTSLNNYKVFDFTFHVHIVSLPVISNILQIPNNVYIFP--NQPTSMKLVVKGMNLKGTLKINSHLISLISKASHKTSMVNLFQRFPYLSGVRFE------NSIRTELKFLEMEVKLNKMKKLLENRGQFLAVSFEVESPQGVLRLRTIVEIVELPVWRRTVNQVDCFDVCHGDRDHLFLCDTFSDQYIKRNFKIDTQWMVEVNGREISE---EDNLLKTYLNITNGSLIL-----KRIFSDAWNDVKIACKLTIYAPKVFINHETQYE-KIYSSDEDERIKGSLEKVVTIVPGRKTRLISIEK------TIITVSLISVIYICGIALFLK 2035
            P +K RK E          Y   NE + +D    + I+  V LI   P   +F C    L     +  A+ C++   S    C         +S  F KF    D   G+I + N +     L   YFCRL N    I SN IE+ ++  Y +  + ++S +P   +   PI   +    L+ G  ++  +  +P W  Q       W  C    D        C+     +    ++    N ++ + D V       +L + S++    +      N  + +    +  +    II  S  +  +  R G+       L+A YT + +     W K  SSL  +F      L FP+ +     G+Y L L S +   +F +     IV  P    I + P    I P  NQ   +     G+  + +L IN   I ++S A ++ S+  L + FPY+  +  E      +SIR  ++ L                G    V+  V +  G +R  T++ ++  P   R ++   C + C     H F CD     Y     ++   W  E++G+++      DN L T+L  +N  ++L       +F + + +V ++C+  I+ P+  +     YE   Y +  D  +   L   +   P  K++L+++         +I V ++ ++ I  + + ++
Sbjct:   18 PFLKFRKVESATHRNGSFSYFGTNEPIIVDGVFPRVIIQIVELINNVPPKLEFHCVVDKLSKDSPITSAQLCFETPASRKLNCDNALGSSYLLSDKF-KFKSTGDIYNGYIFTSNWDRDRFPLDATYFCRLSNSNGVIQSNAIEVQDMDSYTTAFIKRQSLEP---ILRGPIVGSSFPMSLECGGYMD--HVELPNWAKQTFPVPYDWVACEAEADS-QLDIRMCYDRSRSIAGYFEHTVLPNGTLIIHDLVKDWRPIGILCTTSIVRNKIFSAYFQDNDGKAVPFTYIPGTYPNQIIPRSPQDNRVALRSGWHARDTITLNAFYTANPKTVTAMWTKDDSSLPIQFTSNRHSLVFPQDIKPTYAGLYVLSLKSPHEQLLFKYEV---IVEQP--PTIKEAPPRHIIIPQGNQAQVIADFSGGLTSR-SLLINGIQIDVVSSARYRESLRLLQESFPYVGDLNPEIEFPSDSSIRYTVRDLAFAPN--------SPYGSSHIVTMVVTNALGSVRTNTLIRVLPKPDVIRQLSDYSCVEDCFNHTTHRFYCDIEVAPYT--GLRVVKTW--ELDGQDLERLDPRDNRL-TFLKHSNQEVVLNIAQDNALFDELFANVDLSCRFRIFGPETDLFAGYMYETPYYDTKNDPALHAILTAHIRKYPS-KSKLVTVASISWIVAVVIAVLILLIVAILAVCIVMR 691
[Close]
BLAST of SMED30005411 vs. TrEMBL
Match: W6UK84 (Bravo_FIGEY domain-containing protein OS=Echinococcus granulosus OX=6210 GN=EGR_03208 PE=4 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.727e-18
Identity = 150/707 (21.22%), Postives = 273/707 (38.61%), Query Frame = 2 
Query:   47 SENLERILRFAPNPAVKLRKTEYTV--RNEKLSIDAYLSQQIL--VTLIGKQP--FQFFCQTYPLEIQFIVIKAEFCWKLFLSDSEKCSTINEPKQSISLGFEKFAIEFDNQTGFIVS---GNSNF-LRGFYFCRLENQFDSIVSNNIEIHNIHYYRS--LIKESFKPNTDLNSQPIKTVADSHLLDFGIEINDTYKSIPKWIFQKIEKSIKWRICPVNYDDFTYSWAECFKNEILLQPNVDYVQFNNFSIHLFDHVYTKYARFVLESFSVIEKGPWNKF------RIIGSVEMLNSLSGDIIKYSIDNEHLYFREGFSNFFEYKLSAAYTGDVENF--KWEKGLSSLSAKFVQTERELFFPKLVTRDLEGIYYLKLTSLNNYKVFDFTFHVHIVSLPVISNILQIPNNVYIFPNQPTSMKLVVK--GMNLKGTLKINSHLISLISKASHKTSMVNLFQRFPYLSGVRFE------NSIRTELKFLEMEVKLNKMKKLLENRGQFLAVSFEVESPQGVLRLRTIVEIVELPVWRRTVNQVDCFDVCHGDRDHLFLCD----TFSDQYIKRNFKIDTQWMVEVNGREISEEDNLLKTYLNITNGSLIL-----KRIFSDAWNDVKIACKLTIYAPKVFINHETQYE-KIYSSDEDERIKGSLEKVVTIVPGRKTRLISIEK------TIITVSLISVIYICGIALFLK 2035
             EN    L+F    +  LR   ++    N+ + ID    +  +  V LI   P   +F C    L     +  A+ C++   S    C         +S  F KF    D   G+I +   G   F L   YFCRL N    I SN+IE+ ++  Y +  + ++S  P   +   PI   +    L+ G  ++  +  +P W  Q       W  C    D       +C+     +    ++   +N ++ + D V       +L + S++    ++ +      + +    +  +    II  S  +  +  R G+       L+A YT +      KW K  SSL  +F      L FP+ +     G Y L L S   Y    F + V +   P I    + P    I P Q    ++V +  G     +L IN   I  +S   ++ S+  L + FPY+  +  E       SIR  ++ L                G    V+  V +  G +R  T++ ++  P   R ++   C + C     H F CD     +S   + + +++D Q +  ++ R     DN L T+L   N  ++L       +F + + +V ++C+  ++ P   +     YE   Y +  D  +   L   +   P  K++L ++         +I V ++ ++ I  + + ++
Sbjct:   23 GENGTPFLKFHKVESATLRNGSFSYFGTNKPIVIDGMFPRVTIQIVELINNAPPKLEFHCVVDKLSKDSPITSAQLCFETPFSRKLTCDNALGSSYLLSDKF-KFKSMGDIYNGYIFTSNWGRDKFPLDATYFCRLGNSNGVIQSNSIEVQDMDSYTTAFIKRQSLDP---ILRGPIVGSSFPMSLECGGSMD--HVELPNWAKQTFPVPYDWVACEAEADS-QLEIRKCYDRSQPIAEYFEHTVLSNGTLIIHDLVKDWRPIGILCTTSIVRNKIFSAYFQDNDGKAVPFTYIPGTYPNQIIPRSPQHNRVALRSGWHARDIITLNAFYTANPRTVSAKWTKDDSSLPIQFTSNRHSLVFPQDIKPSYAGTYVLSLKS--PYGQLRFKYEVSVEQPPTIK---EAPPRHLIVP-QGNQAQVVAEFSGRLTSRSLLINGIQIDAVSSVRYRESLRLLQESFPYVGDLNPEIEFPSDTSIRYTVRDLAFAPN--------SPYGSSHIVTMVVTNALGSVRTNTLIRVLPKPDVIRQLSDYSCVEDCFNHTTHRFYCDIEMAPYSGLRVVKTWELDGQDLQRLDPR-----DNRL-TFLKYLNREVVLNIAQDNALFDELFANVDLSCRFRVFGPDTDLFAGYMYETPYYDTKNDPALHAMLTAHIRKYPS-KSKLAAVSSISWIVAVVIAVLILLIVAILAVCIVMR 701
[Close]
BLAST of SMED30005411 vs. TrEMBL
Match: A0A068YDM3 (Bravo_FIGEY domain-containing protein OS=Echinococcus multilocularis OX=6211 GN=EmuJ_001058700 PE=4 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.886e-18
Identity = 152/710 (21.41%), Postives = 274/710 (38.59%), Query Frame = 2 
Query:   38 NFASENLERILRFAPNPAVKLRKTEYTV--RNEKLSIDAYLSQQIL--VTLIGKQP--FQFFCQTYPLEIQFIVIKAEFCWKLFLSDSEKCSTINEPKQSISLGFEKFAIEFDNQTGFIVSGNSNF----LRGFYFCRLENQFDSIVSNNIEIHNIHYYRS--LIKESFKPNTDLNSQPIKTVADSHLLDFGIEINDTYKSIPKWIFQKIEKSIKWRICPVNYDDFTYSWAECFKNEILLQPNVDYVQFNNFSIHLFDHVYTKYARFVLESFSVIEKGPW------NKFRIIGSVEMLNSLSGDIIKYSIDNEHLYFREGFSNFFEYKLSAAYTGDVENF--KWEKGLSSLSAKFVQTERELFFPKLVTRDLEGIYYLKLTSLNNYKVFDFTFHVHIVSLPVISNILQIPNNVYIFPNQPTSMKLVVK--GMNLKGTLKINSHLISLISKASHKTSMVNLFQRFPYLSGVRFE------NSIRTELKFLEMEVKLNKMKKLLENRGQFLAVSFEVESPQGVLRLRTIVEIVELPVWRRTVNQVDCFDVCHGDRDHLFLCD----TFSDQYIKRNFKIDTQWMVEVNGREISEEDNLLKTYLNITNGSLIL-----KRIFSDAWNDVKIACKLTIYAPKVFINHETQYE-KIYSSDEDERIKGSLEKVVTIVPGRKTRLISIEK------TIITVSLISVIYICGIALFLK 2035
            N   +N    L+F    +  LR   ++    N+ + ID    Q  +  V LI   P   +F C    L     +  A+ C++   S    C         +S  F KF    D   G+I + N +     L   YFCRL N    I SN+IE+ +I  Y +  + ++S  P   +   PI   +    L+ G  ++  +  +P W  Q       W  C    D       +C+     +    ++   +N ++ + D V       +L + S++    +      N  + +    +  +    II  S  +  +  R G+       L+A YT +      KW K  SSL  +F      L FP+ +     G Y L L S   Y    F + V +   P I    + P    I P Q    ++V +  G     +L IN   I  +S   ++ S+  L + FPY+  +  E       SIR  ++ L                G    V+  V +  G +R  T++ ++  P   R ++   C + C     H F CD     +S   + + +++D Q +  ++ R     DN L T+L   N  ++L       +F + + +V ++C+  ++ P+  +     YE   Y +  D  +   L   +   P  K++L ++         +I V ++ ++ I  + + ++
Sbjct:   16 NAVYQNGTPFLKFHKVESATLRNGSFSYFGANKPIVIDGMFPQVTIQIVELINNAPPKLEFHCVVDKLSKDSPITSAQLCFETPFSRKLTCDNALGSSYLLSDKF-KFKSMGDVYNGYIFTSNWDRDKFPLDATYFCRLGNSNGVIQSNSIEVQDIDSYTTAFIKRQSLDP---ILRGPIVGSSFPMSLECGGSMD--HVELPNWAKQTFPVPYDWVACEAEADS-QLEIRKCYDRSQPIAEYFEHTVLSNGTLIIHDLVKDWRPIGILCTTSIVRNKIFSAYFQDNDGKAVPFTYIPGTYPNQIIPRSPQHNRVALRSGWHARDIITLNAFYTANPRTVSAKWAKDDSSLPIQFTSNRHSLVFPQDIKPSYAGTYVLSLKS--PYGQLRFKYEVSVEQPPTIK---EAPPRHLIVP-QGNQAQVVGEFSGRLTSRSLLINGIQIDAVSLVRYRESLRLLQESFPYVGDLNPEIEFPSDTSIRYTVRDLAFAPN--------SPYGSSHIVTMVVTNALGSVRTNTLIRVLPKPDVIRQLSDYSCVEDCFNHTTHRFYCDIEMAPYSGLRVVKTWELDGQDLQRLDPR-----DNRL-TFLKYLNREVVLNIAQDNALFDELFANVDLSCRFRVFGPETDLFAGYMYETPYYDTKNDPALHAMLTAHIRKYPS-KSKLAAVSSISWIVAVVIAVLILLIVAILAVCIVMR 697
[Close]
BLAST of SMED30005411 vs. TrEMBL
Match: A0A183T8D5 (Uncharacterized protein OS=Schistocephalus solidus OX=70667 PE=4 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.142e-17
Identity = 100/406 (24.63%), Postives = 173/406 (42.61%), Query Frame = 2 
Query:  896 IIKYSIDNEHLYFREGFSNFFEYKLSAAYTGDVENFK--WEKGLSSLSAKFVQTERELFFPKLVTRDLEGIYYLKLTSLNNYKVFDFTFHVHIVSLPVISNILQIPNNVYIFPNQPTSMKLVVKGMNLKGTLKINSHLISLISKASHKTSMVNLFQRFPYLSG----VRF--ENSIRTELKFLEMEVKLNKMKKLLENRGQFLAVSFEVESPQGVLRLRTIVEIVELPVWRRTVNQVDCFDVCHGDRDHLFLCDTFSDQYIKRNFKIDTQWMVEVNGREIS---EEDNLLKTYLNITNGSLILKRIFSDAWND-----VKIACKLTIYAPK----VFINHETQYEKIYSSDEDERIKGSLEKVVTIVPGRKTRLIS------IEKTIITVSLISVIYICGIALFLK 2035
            I+  S+ +    +R G       +L+A YT +    K  W K    L   F  T+  L FP+ +T    G Y L +T  +  +VF  TF+V + + P I  +   P +VY+   QP  ++   +G     ++ IN  LI  +S A  + S+ +L  +FPY+ G    + F  + SIR  L+ +                G   +V+    +  G +  +T++ ++ LP   R +    C D C     H FLCD     Y   N  +   W  E +GR++    ++D LL T+L I    +IL  +  +A  D      +++C+  IYAP+      +N     E +Y +  D  +   L   +   P   T + S      I   +I V ++  + I  + + ++
Sbjct:  156 IVPKSLQSVSKDYRAGQYAKGTIELTALYTANPLKTKTAWTKNGGPLPILFETTDHSLIFPEEITPADSGNYSLTVTGPSQREVF--TFNVLVNAPPKIRRM--APRSVYVLEGQPVQIETEFEGRLTSRSVSINGILIDTLSTALFEESLKHLRDQFPYIDGLYPDIEFPSDTSIRYTLRDITSSAN--------APYGASHSVTLTGTNTLGSVHTQTVIRVLSLPRITRLMADSSCEDDCFNGTSHRFLCDVDLAPYAGLN--VVKTW--EFDGRDLEALHQQDPLL-TFLKIARNEVILSIVAGNATFDRLFASAELSCRFRIYAPEEEELFGVN---AMEPLYDTKTDPELHKLLTAAIRKNPSGNTSIASFTSLSWIAAVVIAVMILLAVIILAVCVVMR 541
[Close]
BLAST of SMED30005411 vs. TrEMBL
Match: A0A3P7D477 (Uncharacterized protein OS=Schistocephalus solidus OX=70667 GN=SSLN_LOCUS12733 PE=4 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.254e-17
Identity = 100/406 (24.63%), Postives = 173/406 (42.61%), Query Frame = 2 
Query:  896 IIKYSIDNEHLYFREGFSNFFEYKLSAAYTGDVENFK--WEKGLSSLSAKFVQTERELFFPKLVTRDLEGIYYLKLTSLNNYKVFDFTFHVHIVSLPVISNILQIPNNVYIFPNQPTSMKLVVKGMNLKGTLKINSHLISLISKASHKTSMVNLFQRFPYLSG----VRF--ENSIRTELKFLEMEVKLNKMKKLLENRGQFLAVSFEVESPQGVLRLRTIVEIVELPVWRRTVNQVDCFDVCHGDRDHLFLCDTFSDQYIKRNFKIDTQWMVEVNGREIS---EEDNLLKTYLNITNGSLILKRIFSDAWND-----VKIACKLTIYAPK----VFINHETQYEKIYSSDEDERIKGSLEKVVTIVPGRKTRLIS------IEKTIITVSLISVIYICGIALFLK 2035
            I+  S+ +    +R G       +L+A YT +    K  W K    L   F  T+  L FP+ +T    G Y L +T  +  +VF  TF+V + + P I  +   P +VY+   QP  ++   +G     ++ IN  LI  +S A  + S+ +L  +FPY+ G    + F  + SIR  L+ +                G   +V+    +  G +  +T++ ++ LP   R +    C D C     H FLCD     Y   N  +   W  E +GR++    ++D LL T+L I    +IL  +  +A  D      +++C+  IYAP+      +N     E +Y +  D  +   L   +   P   T + S      I   +I V ++  + I  + + ++
Sbjct:  156 IVPKSLQSVSKDYRAGQYAKGTIELTALYTANPLKTKTAWTKNGGPLPILFETTDHSLIFPEEITPADSGNYSLTVTGPSQREVF--TFNVLVNAPPKIRRM--APRSVYVLEGQPVQIETEFEGRLTSRSVSINGILIDTLSTALFEESLKHLRDQFPYIDGLYPDIEFPSDTSIRYTLRDITSSAN--------APYGASHSVTLTGTNTLGSVHTQTVIRVLSLPRITRLMADSSCEDDCFNGTSHRFLCDVDLAPYAGLN--VVKTW--EFDGRDLEALHQQDPLL-TFLKIARNEVILSIVAGNATFDRLFASAELSCRFRIYAPEEEELFGVN---AMEPLYDTKTDPELHKLLTAAIRKNPSGNTSIASFTSLSWIAAVVIAVMILLAVIILAVCVVMR 541
[Close]
BLAST of SMED30005411 vs. Planmine SMEST
Match: SMESG000070139.1 (SMESG000070139.1)

HSP 1 Score: 1466.44 bits (3795), Expect = 0.000e+0
Identity = 718/718 (100.00%), Postives = 718/718 (100.00%), Query Frame = 2 
Query:    2 IYFKVIFIIFLPNFASENLERILRFAPNPAVKLRKTEYTVRNEKLSIDAYLSQQILVTLIGKQPFQFFCQTYPLEIQFIVIKAEFCWKLFLSDSEKCSTINEPKQSISLGFEKFAIEFDNQTGFIVSGNSNFLRGFYFCRLENQFDSIVSNNIEIHNIHYYRSLIKESFKPNTDLNSQPIKTVADSHLLDFGIEINDTYKSIPKWIFQKIEKSIKWRICPVNYDDFTYSWAECFKNEILLQPNVDYVQFNNFSIHLFDHVYTKYARFVLESFSVIEKGPWNKFRIIGSVEMLNSLSGDIIKYSIDNEHLYFREGFSNFFEYKLSAAYTGDVENFKWEKGLSSLSAKFVQTERELFFPKLVTRDLEGIYYLKLTSLNNYKVFDFTFHVHIVSLPVISNILQIPNNVYIFPNQPTSMKLVVKGMNLKGTLKINSHLISLISKASHKTSMVNLFQRFPYLSGVRFENSIRTELKFLEMEVKLNKMKKLLENRGQFLAVSFEVESPQGVLRLRTIVEIVELPVWRRTVNQVDCFDVCHGDRDHLFLCDTFSDQYIKRNFKIDTQWMVEVNGREISEEDNLLKTYLNITNGSLILKRIFSDAWNDVKIACKLTIYAPKVFINHETQYEKIYSSDEDERIKGSLEKVVTIVPGRKTRLISIEKTIITVSLISVIYICGIALFLKFIWLLPLEYWHISAPRNESVNINNLHQDPTSTPLLPIAIS 2155
            IYFKVIFIIFLPNFASENLERILRFAPNPAVKLRKTEYTVRNEKLSIDAYLSQQILVTLIGKQPFQFFCQTYPLEIQFIVIKAEFCWKLFLSDSEKCSTINEPKQSISLGFEKFAIEFDNQTGFIVSGNSNFLRGFYFCRLENQFDSIVSNNIEIHNIHYYRSLIKESFKPNTDLNSQPIKTVADSHLLDFGIEINDTYKSIPKWIFQKIEKSIKWRICPVNYDDFTYSWAECFKNEILLQPNVDYVQFNNFSIHLFDHVYTKYARFVLESFSVIEKGPWNKFRIIGSVEMLNSLSGDIIKYSIDNEHLYFREGFSNFFEYKLSAAYTGDVENFKWEKGLSSLSAKFVQTERELFFPKLVTRDLEGIYYLKLTSLNNYKVFDFTFHVHIVSLPVISNILQIPNNVYIFPNQPTSMKLVVKGMNLKGTLKINSHLISLISKASHKTSMVNLFQRFPYLSGVRFENSIRTELKFLEMEVKLNKMKKLLENRGQFLAVSFEVESPQGVLRLRTIVEIVELPVWRRTVNQVDCFDVCHGDRDHLFLCDTFSDQYIKRNFKIDTQWMVEVNGREISEEDNLLKTYLNITNGSLILKRIFSDAWNDVKIACKLTIYAPKVFINHETQYEKIYSSDEDERIKGSLEKVVTIVPGRKTRLISIEKTIITVSLISVIYICGIALFLKFIWLLPLEYWHISAPRNESVNINNLHQDPTSTPLLPIAIS
Sbjct:    3 IYFKVIFIIFLPNFASENLERILRFAPNPAVKLRKTEYTVRNEKLSIDAYLSQQILVTLIGKQPFQFFCQTYPLEIQFIVIKAEFCWKLFLSDSEKCSTINEPKQSISLGFEKFAIEFDNQTGFIVSGNSNFLRGFYFCRLENQFDSIVSNNIEIHNIHYYRSLIKESFKPNTDLNSQPIKTVADSHLLDFGIEINDTYKSIPKWIFQKIEKSIKWRICPVNYDDFTYSWAECFKNEILLQPNVDYVQFNNFSIHLFDHVYTKYARFVLESFSVIEKGPWNKFRIIGSVEMLNSLSGDIIKYSIDNEHLYFREGFSNFFEYKLSAAYTGDVENFKWEKGLSSLSAKFVQTERELFFPKLVTRDLEGIYYLKLTSLNNYKVFDFTFHVHIVSLPVISNILQIPNNVYIFPNQPTSMKLVVKGMNLKGTLKINSHLISLISKASHKTSMVNLFQRFPYLSGVRFENSIRTELKFLEMEVKLNKMKKLLENRGQFLAVSFEVESPQGVLRLRTIVEIVELPVWRRTVNQVDCFDVCHGDRDHLFLCDTFSDQYIKRNFKIDTQWMVEVNGREISEEDNLLKTYLNITNGSLILKRIFSDAWNDVKIACKLTIYAPKVFINHETQYEKIYSSDEDERIKGSLEKVVTIVPGRKTRLISIEKTIITVSLISVIYICGIALFLKFIWLLPLEYWHISAPRNESVNINNLHQDPTSTPLLPIAIS 720
[Close]
BLAST of SMED30005411 vs. Planmine SMEST
Match: SMESG000064374.1 (SMESG000064374.1)

HSP 1 Score: 192.971 bits (489), Expect = 6.970e-51
Identity = 177/693 (25.54%), Postives = 309/693 (44.59%), Query Frame = 2 
Query:   41 FASENLERILRFAPNPAVKLRKTEYTVRNEKLSIDAYLSQQILVTLIGK------QPFQFFCQTYPLEIQFIVIKAEFCWKLFLSDSEKCSTINEPKQSISLG-FEKFAIEFDNQTGFIVSGNSNF---------LRGFYFCRLENQFDSIVSNNIEIHNIHYYRS-------LIKESFKPNTDLNSQPIKT-VADSH--LLDFGIEINDTYKSIPKWIFQKIEKSIKWRICPVNYDDFTYSWAECF--------KNEILLQPNVDYVQFNNFSIHLFD---HVYTKYARF------VLESFSVIEKGPWNKFRIIGSVEMLNSLSGDIIKYSIDNEHLYFREGFSNFFEYKLSAAYTGDVENFK----WEKGLSSLSAKFVQTERELFFPKLVTRDLEGIYYLKLTSLNNYKVFDFTFHVHIVSLPVISNILQIPNNVYIFPNQPTSMKLVVKGMNLKGTLKINSHLISLISKASHKTSMVNLFQRFPYLSGVRFENSIRTELKFLEMEVKLNKMKKLLENRGQFLAVSFEVESPQGVLRLRTIVEIVELPVWRRTVNQVDCFDVCHGDRDHLFLCDTFSDQYIKRNFKIDTQWMVEVNGREISEEDNL-----LKTYLNITNGSLILKRIFSDAWNDVK----------IACKLTIYAPKVFINHETQYEKIYSSDEDERIKGSLEKVVTI 1933
            ++   LE+ L+F P+  V +RK+ Y +  + +S+DA+ S Q+L+  I          F+F+C    LE  F +  A  C K  +   E C  I++  Q I      +F  +FD  TG I   N +            GFY+C+LEN   SI SN IEI +  +Y++        I   F P+      PI    +DS    LD G  + +  ++IPKW  + +  S  W++CP    D T S  +CF        K+   L+  +DY QF N +  L     + Y K   F      V + +S       N      S  ++   +  I + S +N  +  REG      +KL A Y G+ ++ K    W+K   SL + F Q   +L FP  ++    G Y LK+     +    F ++V +VS P + + ++  +  Y+  ++   + +  +    K +L++N+  I L++  + + S+ NL  +FP+L+G+    +I      +  E K N +K+    + +   V+F  E+  GV ++  ++ + E P +   +N  +C D C  D+ H F C     +Y K  F I   W   +NG  +   DN+     +K++L + N ++ +K I S      K          ++C++ I      +      E  YS+D++  ++  L+ +V +
Sbjct:   13 YSISGLEKFLQFIPHKDVTIRKSVYELDEDPVSVDAFQSSQVLIKYIQSIRDLNFPEFKFYCHVKELETNFKISNAYLCKKQSIMGHEDCHLISKDTQKIKFQEHMQFETKFDPGTGIIADLNMDISAVKSRLQPFDGFYYCKLENHMGSISSNYIEIQDFEFYKTKLSNFINQISVRFAPS------PINDFTSDSFPIYLDCGKLVGNYEENIPKWANKDLLSSFTWQLCP----DAT-SGIQCFSSVVDTQKKSSRPLEEFIDYYQFPNGTAVLLGIKGNDYIKAGLFCGLKAIVPKMYSAYLVKTKNALWRPISYTVVGKYNKKIKQLSAENTEITIREGKYRSSRFKLYALYVGNPDHTKIKAEWKKDTYSLPSTFKQGPYQLVFPIEISESYSGKYDLKIIQSEPFDTVTFRYNVKVVSSPKLKDNIKQQSVFYVTVDKSAQISVFFERDITKLSLEVNNMPIDLLTAKAKEKSVKNLCYKFPFLTGIDISANISLNEGMIYYEAK-NLIKRSNSPQAKTHTVTFIAENDIGVSKVSYLIRVFENPTFIYYLNDFNCTDNCMDDQRHDFKCSINETEYKKEGFTIKYVWT--INGLSV---DNMQSGYAIKSFLEVNNDTITIKPIKSANLEKYKEMLGYFSKSNLSCRVDI------VPTSNPSETFYSTDQNPNLRPYLQAMVNL 682
[Close]
BLAST of SMED30005411 vs. Planmine SMEST
Match: SMESG000064374.1 (SMESG000064374.1)

HSP 1 Score: 192.971 bits (489), Expect = 7.638e-51
Identity = 177/693 (25.54%), Postives = 309/693 (44.59%), Query Frame = 2 
Query:   41 FASENLERILRFAPNPAVKLRKTEYTVRNEKLSIDAYLSQQILVTLIGK------QPFQFFCQTYPLEIQFIVIKAEFCWKLFLSDSEKCSTINEPKQSISLG-FEKFAIEFDNQTGFIVSGNSNF---------LRGFYFCRLENQFDSIVSNNIEIHNIHYYRS-------LIKESFKPNTDLNSQPIKT-VADSH--LLDFGIEINDTYKSIPKWIFQKIEKSIKWRICPVNYDDFTYSWAECF--------KNEILLQPNVDYVQFNNFSIHLFD---HVYTKYARF------VLESFSVIEKGPWNKFRIIGSVEMLNSLSGDIIKYSIDNEHLYFREGFSNFFEYKLSAAYTGDVENFK----WEKGLSSLSAKFVQTERELFFPKLVTRDLEGIYYLKLTSLNNYKVFDFTFHVHIVSLPVISNILQIPNNVYIFPNQPTSMKLVVKGMNLKGTLKINSHLISLISKASHKTSMVNLFQRFPYLSGVRFENSIRTELKFLEMEVKLNKMKKLLENRGQFLAVSFEVESPQGVLRLRTIVEIVELPVWRRTVNQVDCFDVCHGDRDHLFLCDTFSDQYIKRNFKIDTQWMVEVNGREISEEDNL-----LKTYLNITNGSLILKRIFSDAWNDVK----------IACKLTIYAPKVFINHETQYEKIYSSDEDERIKGSLEKVVTI 1933
            ++   LE+ L+F P+  V +RK+ Y +  + +S+DA+ S Q+L+  I          F+F+C    LE  F +  A  C K  +   E C  I++  Q I      +F  +FD  TG I   N +            GFY+C+LEN   SI SN IEI +  +Y++        I   F P+      PI    +DS    LD G  + +  ++IPKW  + +  S  W++CP    D T S  +CF        K+   L+  +DY QF N +  L     + Y K   F      V + +S       N      S  ++   +  I + S +N  +  REG      +KL A Y G+ ++ K    W+K   SL + F Q   +L FP  ++    G Y LK+     +    F ++V +VS P + + ++  +  Y+  ++   + +  +    K +L++N+  I L++  + + S+ NL  +FP+L+G+    +I      +  E K N +K+    + +   V+F  E+  GV ++  ++ + E P +   +N  +C D C  D+ H F C     +Y K  F I   W   +NG  +   DN+     +K++L + N ++ +K I S      K          ++C++ I      +      E  YS+D++  ++  L+ +V +
Sbjct:   14 YSISGLEKFLQFIPHKDVTIRKSVYELDEDPVSVDAFQSSQVLIKYIQSIRDLNFPEFKFYCHVKELETNFKISNAYLCKKQSIMGHEDCHLISKDTQKIKFQEHMQFETKFDPGTGIIADLNMDISAVKSRLQPFDGFYYCKLENHMGSISSNYIEIQDFEFYKTKLSNFINQISVRFAPS------PINDFTSDSFPIYLDCGKLVGNYEENIPKWANKDLLSSFTWQLCP----DAT-SGIQCFSSVVDTQKKSSRPLEEFIDYYQFPNGTAVLLGIKGNDYIKAGLFCGLKAIVPKMYSAYLVKTKNALWRPISYTVVGKYNKKIKQLSAENTEITIREGKYRSSRFKLYALYVGNPDHTKIKAEWKKDTYSLPSTFKQGPYQLVFPIEISESYSGKYDLKIIQSEPFDTVTFRYNVKVVSSPKLKDNIKQQSVFYVTVDKSAQISVFFERDITKLSLEVNNMPIDLLTAKAKEKSVKNLCYKFPFLTGIDISANISLNEGMIYYEAK-NLIKRSNSPQAKTHTVTFIAENDIGVSKVSYLIRVFENPTFIYYLNDFNCTDNCMDDQRHDFKCSINETEYKKEGFTIKYVWT--INGLSV---DNMQSGYAIKSFLEVNNDTITIKPIKSANLEKYKEMLGYFSKSNLSCRVDI------VPTSNPSETFYSTDQNPNLRPYLQAMVNL 683
[Close]
BLAST of SMED30005411 vs. Planmine SMEST
Match: SMESG000064379.1 (SMESG000064379.1)

HSP 1 Score: 153.295 bits (386), Expect = 5.511e-38
Identity = 183/757 (24.17%), Postives = 317/757 (41.88%), Query Frame = 2 
Query:   14 VIFIIFLPNFASENLERILRFAPNPAVKLRKTEYTVRNEKLSIDAYLSQQILVTLI-----GKQPFQFFCQTYPLEIQFIVIKAEFCWKLFLSDSEKCSTINEPKQSISLGFE-KFAIEFDNQTGFIVS----GNSNFLR-----GFYFCRLENQFDSIVSNNIEIHNIHYYRS----LIKESFKPNTDLN--------SQPIKTVADSHLLDFGIEINDTYKSIPKWI-FQKIEKSIKWRIC-PVNYDDFTYSWAECFKNEILLQPNVDYVQFNNFSIHLFDHVYTKYARFVLESFSVIEKGPWNKFRIIGSVE---------MLNSLSGDIIKYSIDNEHLYFREG-FSNFFEYKLSAAYTGDVE----NFKWEKGLSSLSAKFVQTERELFFPKLVTRDLEGIYYLKLTSLNNYKVFDFTFHVHIVSLPVISNILQIPNNVY----IFPNQPTSMKLVVKGMNLKGTLKINSHLISLISKASHKTSMVNLFQRFPYLSGVRFENSIRTELKFLEMEVKLNKMKKLLENRGQFLAVSFEVESPQGVLRLRTIVEIVELPVWRRTVNQVDCFDVCHGDRDHLFLCDTFSDQYIKRNFKIDTQWMVEVNGREISE-EDNLLKTYLNITNGSLILK--------------RIFSDAWNDVKIACKLTIYAPKVFINHETQYEKIYSSDEDERIKGSLEKVVTIVPGRKTRLISIEKTIITVSLISVIYICGIALFLKFIWLLPLEYWHISAPRNESVN 2098
            ++   F+P+     LE+ L+F P+  V+ R+T Y      ++ DAYL  Q+L+  +           F+C   PL+  + + KA FC K  L+  E C  I +    IS GF   F+I FD+  G I+     G   F R     GFY+C+L N   SI SN  EI +  +YR     L    F  + D+         S P   +  + +L +        K++PKW+ +    + ++WR C P + +       E   N   L+      QF N SI L     T Y    L         P          E          LNS    I   +  + ++  REG + N   +KL A Y  + +     ++W K  + L + F  T  EL FP  +     G+Y L ++         F + V I   P + +    P+ +Y     FP    S +  +  +    +L+IN+  I ++S+ + +  +  LF ++ +L+G+    +I      +E EVK N  K L  + G+   V+F  E+P GV ++  ++ I+E P +   +    C + C     H+F C     +Y K  F   T+++  +NG  ++  + +    YL+I   ++ LK              R+FS++     ++CK+ I     F N + +    Y+SD    +K  LE  + +   +    +S+   +I + L  ++ +  + L L F      + +++    + S N
Sbjct:    4 LMLFYFIPSIFG--LEKFLQFTPHKDVRERRTSYQFNELSINYDAYLDSQVLIKYLLHYTYASNNVTFYCHVKPLDKNYKITKAYFCKKGSLTTQEDCYEIYKKTHEISFGFHFNFSIIFDSTEGMIIRLSIRGYHTFRRARPFHGFYYCKLYNILGSISSNYAEIQDHEFYRLRWTLLFDYRFNFDNDVRRTAHFTSESFPFYILCCNAILKYE-------KNVPKWLNYDLFSQQLEWRFCRPFHRNRRCLMNNEA--NYTFLEDFFHCYQFPNGSIVLMGLKRTDYRESGLLCSIDTSDDPQYLSEYFFKNETRWQYIYYYALNSYRRKIKFLTETDFNITTREGIYDNKTRFKLYALYVSNPDPKSIAYEWRKDNARLPSTFTGTSHELLFPIEIYDSDSGLYELTVSQSKPPDNATFRYKVTISCPPKLKDRSTRPSVIYSLDDFFPRLSLSFERDITNL----SLEINNIPIDVLSETNKENDLKRLFLKYEFLTGIDISANISVSQGLIEYEVK-NLTKNLNTSEGKTHIVTFIAENPTGVSKISYLIRILENPKFIHYLKDFSCINNCSNQDKHIFKCAIEELEYKKIGFL--TKYVWSLNGLSLNYVKGHEQMIYLDINRDTITLKPFKSENPIRDQRMTRLFSNSI----LSCKVII----SFNNKDIR----YNSDNHPNVKSLLEAKIKLQENQIN--VSLTSWMIPLILSFIVMVAVVTLTLYFCQKFSGKTYNVDQNGSTSAN 728
[Close]
BLAST of SMED30005411 vs. Planmine SMEST
Match: SMESG000064379.1 (SMESG000064379.1)

HSP 1 Score: 153.295 bits (386), Expect = 5.562e-38
Identity = 181/743 (24.36%), Postives = 311/743 (41.86%), Query Frame = 2 
Query:   56 LERILRFAPNPAVKLRKTEYTVRNEKLSIDAYLSQQILVTLI-----GKQPFQFFCQTYPLEIQFIVIKAEFCWKLFLSDSEKCSTINEPKQSISLGFE-KFAIEFDNQTGFIVS----GNSNFLR-----GFYFCRLENQFDSIVSNNIEIHNIHYYRS----LIKESFKPNTDLN--------SQPIKTVADSHLLDFGIEINDTYKSIPKWI-FQKIEKSIKWRIC-PVNYDDFTYSWAECFKNEILLQPNVDYVQFNNFSIHLFDHVYTKYARFVLESFSVIEKGPWNKFRIIGSVE---------MLNSLSGDIIKYSIDNEHLYFREG-FSNFFEYKLSAAYTGDVE----NFKWEKGLSSLSAKFVQTERELFFPKLVTRDLEGIYYLKLTSLNNYKVFDFTFHVHIVSLPVISNILQIPNNVY----IFPNQPTSMKLVVKGMNLKGTLKINSHLISLISKASHKTSMVNLFQRFPYLSGVRFENSIRTELKFLEMEVKLNKMKKLLENRGQFLAVSFEVESPQGVLRLRTIVEIVELPVWRRTVNQVDCFDVCHGDRDHLFLCDTFSDQYIKRNFKIDTQWMVEVNGREISE-EDNLLKTYLNITNGSLILK--------------RIFSDAWNDVKIACKLTIYAPKVFINHETQYEKIYSSDEDERIKGSLEKVVTIVPGRKTRLISIEKTIITVSLISVIYICGIALFLKFIWLLPLEYWHISAPRNESVN 2098
            LE+ L+F P+  V+ R+T Y      ++ DAYL  Q+L+  +           F+C   PL+  + + KA FC K  L+  E C  I +    IS GF   F+I FD+  G I+     G   F R     GFY+C+L N   SI SN  EI +  +YR     L    F  + D+         S P   +  + +L +        K++PKW+ +    + ++WR C P + +       E   N   L+      QF N SI L     T Y    L         P          E          LNS    I   +  + ++  REG + N   +KL A Y  + +     ++W K  + L + F  T  EL FP  +     G+Y L ++         F + V I   P + +    P+ +Y     FP    S +  +  +    +L+IN+  I ++S+ + +  +  LF ++ +L+G+    +I      +E EVK N  K L  + G+   V+F  E+P GV ++  ++ I+E P +   +    C + C     H+F C     +Y K  F   T+++  +NG  ++  + +    YL+I   ++ LK              R+FS++     ++CK+ I     F N + +    Y+SD    +K  LE  + +   +    +S+   +I + L  ++ +  + L L F      + +++    + S N
Sbjct:   12 LEKFLQFTPHKDVRERRTSYQFNELSINYDAYLDSQVLIKYLLHYTYASNNVTFYCHVKPLDKNYKITKAYFCKKGSLTTQEDCYEIYKKTHEISFGFHFNFSIIFDSTEGMIIRLSIRGYHTFRRARPFHGFYYCKLYNILGSISSNYAEIQDHEFYRLRWTLLFDYRFNFDNDVRRTAHFTSESFPFYILCCNAILKYE-------KNVPKWLNYDLFSQQLEWRFCRPFHRNRRCLMNNEA--NYTFLEDFFHCYQFPNGSIVLMGLKRTDYRESGLLCSIDTSDDPQYLSEYFFKNETRWQYIYYYALNSYRRKIKFLTETDFNITTREGIYDNKTRFKLYALYVSNPDPKSIAYEWRKDNARLPSTFTGTSHELLFPIEIYDSDSGLYELTVSQSKPPDNATFRYKVTISCPPKLKDRSTRPSVIYSLDDFFPRLSLSFERDITNL----SLEINNIPIDVLSETNKENDLKRLFLKYEFLTGIDISANISVSQGLIEYEVK-NLTKNLNTSEGKTHIVTFIAENPTGVSKISYLIRILENPKFIHYLKDFSCINNCSNQDKHIFKCAIEELEYKKIGFL--TKYVWSLNGLSLNYVKGHEQMIYLDINRDTITLKPFKSENPIRDQRMTRLFSNSI----LSCKVII----SFNNKDIR----YNSDNHPNVKSLLEAKIKLQENQIN--VSLTSWMIPLILSFIVMVAVVTLTLYFCQKFSGKTYNVDQNGSTSAN 724
The following BLAST results are available for this feature:
BLAST of SMED30005411 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005411 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005411 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005411 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005411 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005411 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005411 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005411 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0R3X0N76.342e-1921.68Bravo_FIGEY domain-containing protein OS=Hydatigen... [more]
W6UK841.727e-1821.22Bravo_FIGEY domain-containing protein OS=Echinococ... [more]
A0A068YDM31.886e-1821.41Bravo_FIGEY domain-containing protein OS=Echinococ... [more]
A0A183T8D53.142e-1724.63Uncharacterized protein OS=Schistocephalus solidus... [more]
A0A3P7D4773.254e-1724.63Uncharacterized protein OS=Schistocephalus solidus... [more]
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BLAST of SMED30005411 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005411 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005411 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005411 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005411 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005411 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000070139.10.000e+0100.00SMESG000070139.1[more]
SMESG000064374.16.970e-5125.54SMESG000064374.1[more]
SMESG000064374.17.638e-5125.54SMESG000064374.1[more]
SMESG000064379.15.511e-3824.17SMESG000064379.1[more]
SMESG000064379.15.562e-3824.36SMESG000064379.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30005411 ID=SMED30005411|Name=SMED30005411|organism=Schmidtea mediterranea sexual|type=transcript|length=2659bp
AATATATTTTAAAGTGATTTTCATAATATTCCTACCGAATTTCGCTAGCG
AGAATCTTGAAAGAATTCTGAGATTTGCCCCGAATCCGGCGGTTAAGTTG
CGCAAAACTGAATATACGGTGAGAAACGAAAAACTTTCGATTGATGCGTA
TTTGAGCCAGCAAATATTGGTAACTCTCATCGGAAAGCAGCCGTTTCAAT
TTTTTTGTCAAACTTATCCGCTCGAAATCCAATTTATTGTGATAAAAGCG
GAATTTTGTTGGAAATTATTCCTGTCAGATTCTGAGAAATGTTCCACAAT
CAACGAGCCCAAGCAATCAATAAGTTTAGGATTTGAAAAATTTGCAATTG
AATTCGACAATCAAACGGGATTTATTGTTTCGGGAAATTCGAATTTTCTT
CGCGGATTTTATTTTTGTCGGCTGGAAAATCAATTCGATTCAATCGTTTC
TAACAACATCGAAATCCACAATATCCACTACTATCGATCGTTGATAAAAG
AATCCTTCAAACCAAATACTGATCTGAATAGTCAGCCAATCAAAACTGTT
GCCGATTCTCATTTGCTCGATTTTGGCATCGAAATCAATGACACTTACAA
GTCGATTCCAAAATGGATTTTTCAGAAAATAGAAAAATCAATAAAATGGA
GAATTTGTCCAGTAAATTATGACGATTTCACTTATAGTTGGGCCGAGTGT
TTTAAGAACGAAATTCTTTTGCAACCGAATGTTGACTATGTTCAGTTTAA
TAATTTCTCCATTCATTTGTTTGATCATGTCTATACGAAATACGCAAGGT
TTGTCCTGGAGAGTTTCAGTGTCATCGAAAAAGGTCCTTGGAATAAATTT
AGAATTATTGGATCTGTTGAAATGTTGAACTCATTGTCTGGAGACATCAT
CAAATATTCCATAGATAATGAGCATTTATACTTTCGAGAAGGTTTCAGTA
ATTTTTTCGAATACAAACTTTCCGCCGCTTATACGGGAGATGTCGAAAAC
TTCAAATGGGAAAAAGGTTTATCAAGTCTCTCAGCAAAATTTGTGCAAAC
AGAAAGAGAATTATTTTTCCCAAAACTAGTCACTCGAGATCTCGAAGGGA
TTTATTATCTGAAATTGACTTCATTAAACAATTACAAAGTGTTTGATTTC
ACATTTCACGTTCATATAGTCTCTTTGCCCGTCATCTCGAATATCCTACA
AATCCCCAACAATGTTTATATATTTCCCAATCAACCCACCTCAATGAAAC
TCGTTGTCAAGGGAATGAATTTAAAGGGAACATTGAAAATCAACTCTCAC
TTGATCAGTTTAATAAGTAAAGCCTCTCACAAAACAAGTATGGTGAATCT
GTTTCAGAGGTTCCCATATTTGTCCGGAGTGAGATTTGAAAATTCAATAA
GAACCGAATTGAAGTTTCTCGAAATGGAAGTAAAATTAAACAAAATGAAG
AAATTATTAGAAAACCGAGGGCAATTTCTAGCAGTTAGTTTTGAAGTAGA
AAGTCCACAAGGAGTTCTTCGTTTGAGAACGATTGTGGAAATAGTAGAAC
TGCCGGTTTGGAGACGAACCGTTAATCAGGTCGACTGTTTTGATGTTTGT
CACGGTGATCGAGATCATTTGTTTCTCTGTGATACTTTCTCCGATCAGTA
TATCAAGCGCAACTTCAAAATTGACACCCAATGGATGGTCGAGGTGAATG
GAAGGGAAATTTCCGAAGAAGATAATCTGTTAAAAACTTACCTAAATATT
ACAAACGGGTCTTTGATTTTGAAAAGGATTTTCTCTGATGCTTGGAACGA
TGTCAAAATTGCATGCAAACTCACAATTTATGCTCCGAAAGTGTTTATAA
ATCACGAAACTCAATACGAAAAAATCTATTCTAGTGACGAAGATGAAAGA
ATTAAAGGAAGTCTAGAGAAAGTTGTGACAATTGTCCCAGGCAGGAAAAC
CAGGCTGATATCAATAGAAAAAACCATTATTACTGTAAGTTTAATTTCTG
TCATTTATATTTGTGGAATCGCGCTATTTTTGAAATTTATATGGTTGCTA
CCCCTTGAATATTGGCACATCAGTGCCCCCCGCAATGAAAGCGTTAACAT
AAATAATTTACACCAAGACCCCACTAGCACTCCATTACTTCCGATTGCAA
TAAGTTAAATATATAAAACACTGGAAATAATTGTGCTGAAAATTCTTGTT
AAATGAATAAAATTGTGGTTTTAATTATTTTTCAACAAGATAAAGCGATA
AGTCTAACTTTTCGTGTCTCACTCAGAACAATAACTCATCACAATTAGAT
TTTATTATTTTCACTTATACAATCGTTCAAAATTTAGTCAACATAATTGA
CCTTTGCTTGATAATAGGGGAAAGTAACTCGAAGGTCAAACGCTTCAAGC
AACAAAGACAAACAAATCTGGTTAAACCTCAACAGAAACCTTCTCACTTT
TTCCATAGTCCTTTTTATTTCAATTAAAGCGCATTAACTCCTCGAAATTT
TACCTACTCTTTCTATGACCAGTTATGTTGGTTTGACTGAGTTTTAGGTT
CGTTTAATATTTTTATTCTGACAAAAGATCAAAAGTGTGGATAAATGTAC
AGCAAAATAATTAGCACGTTAACCAGAATAGCTAAAAACGCATTACCGAG
TGCAGGGGC
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protein sequence of SMED30005411-orf-1

>SMED30005411-orf-1 ID=SMED30005411-orf-1|Name=SMED30005411-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=719bp
IYFKVIFIIFLPNFASENLERILRFAPNPAVKLRKTEYTVRNEKLSIDAY
LSQQILVTLIGKQPFQFFCQTYPLEIQFIVIKAEFCWKLFLSDSEKCSTI
NEPKQSISLGFEKFAIEFDNQTGFIVSGNSNFLRGFYFCRLENQFDSIVS
NNIEIHNIHYYRSLIKESFKPNTDLNSQPIKTVADSHLLDFGIEINDTYK
SIPKWIFQKIEKSIKWRICPVNYDDFTYSWAECFKNEILLQPNVDYVQFN
NFSIHLFDHVYTKYARFVLESFSVIEKGPWNKFRIIGSVEMLNSLSGDII
KYSIDNEHLYFREGFSNFFEYKLSAAYTGDVENFKWEKGLSSLSAKFVQT
ERELFFPKLVTRDLEGIYYLKLTSLNNYKVFDFTFHVHIVSLPVISNILQ
IPNNVYIFPNQPTSMKLVVKGMNLKGTLKINSHLISLISKASHKTSMVNL
FQRFPYLSGVRFENSIRTELKFLEMEVKLNKMKKLLENRGQFLAVSFEVE
SPQGVLRLRTIVEIVELPVWRRTVNQVDCFDVCHGDRDHLFLCDTFSDQY
IKRNFKIDTQWMVEVNGREISEEDNLLKTYLNITNGSLILKRIFSDAWND
VKIACKLTIYAPKVFINHETQYEKIYSSDEDERIKGSLEKVVTIVPGRKT
RLISIEKTIITVSLISVIYICGIALFLKFIWLLPLEYWHISAPRNESVNI
NNLHQDPTSTPLLPIAIS*
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InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 659..681