Polyadenylate-binding protein
|
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30005231 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 15
Homology
BLAST of Polyadenylate-binding protein vs. Ensembl Human
Match: PABPC1 (poly(A) binding protein cytoplasmic 1 [Source:HGNC Symbol;Acc:HGNC:8554]) HSP 1 Score: 546.584 bits (1407), Expect = 0.000e+0 Identity = 303/630 (48.10%), Postives = 399/630 (63.33%), Query Frame = 2
Query: 89 PTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQRSTP----NKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRGHQ----PQPVFNP-------GMVNFMMNSNVQRPFMARPGNILQ----NRW----PQTMPYI-QPRNIGMPANQNIMMTGMPQNQQRRNIM----VDPMMNQNRNARPITGNVQLN---QTRPQYNMVANGRQGNNIMYQYPIQDNQPMLNPDQMKMPDIESQ-IDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHKGGEG 1882
P+ P ASLYVGDLHPDVTEA+LYEKF G +LSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ I G+P RIMWSQRDP+ R+SGVGNIFIKNLD SI K + DTF+ FG I SCKV DENG SKG+ FV+F + AE+AI+ +NG ++ ++ V+V +F R +R K+FTN YIKNFG + D+ L+DLF + G +S KVM D+ G SKGFGFVSF+ HEDA KAV+ +NG+ + K IYVGRA KK ERQ EL+ ++E+ +Q+R+ +++ GVNLY+KNL + I+DERLR EF+ FG ITSAKVM+ E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR P PV NP G + R P I Q RW + P+ P I A + T P + Q +M V Q RP +T PQY A R + + QP + M+ P + Q + T S +A+A E KQ+LGE+++PL+ +AGKITGM LE+DN+ELL+M+E+ SL+ K+DEA+ VL AH+ E
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQ-GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHL------NAQPQVT---MQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
BLAST of Polyadenylate-binding protein vs. Ensembl Human
Match: PABPC4 (poly(A) binding protein cytoplasmic 4 [Source:HGNC Symbol;Acc:HGNC:8557]) HSP 1 Score: 543.502 bits (1399), Expect = 0.000e+0 Identity = 298/610 (48.85%), Postives = 399/610 (65.41%), Query Frame = 2
Query: 83 ANPTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQR----STPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQR--GHQPQPV------FNPGMVNFMMNSNVQRPFMARPGNILQNRWPQTMPYIQPRNIGMPANQNIMMTGMPQNQQRRNIMVDPMMNQNRNARPITGNVQLNQTRPQYNMVANGRQGNNIMYQYP--IQDNQPMLNPDQMKMPDIESQ-IDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAH 1867
A + P ASLYVGDLH DVTEA+LYEKF G VLSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ I G+P RIMWSQRDP+ R+SGVGN+FIKNLD SI K + DTF+ FG I SCKV DENG SKG+AFV+F + A+KAI+ +NG ++ ++ V+V +F R +R K+FTN YIKNFG + D+SL++LF Q G+ +S KVM D G SKGFGFVS+++HEDA KAV +NG+ I K I+VGRA KK ERQ EL+ ++E+ +QER+ +++ GVNLYIKNL + I+DE+LR EF+ FG+ITSAKVML E+ SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR G + P F P + + + Q RP N+ Q P + + G P M + + Q+ R + R+ P TG Q VA Y+Y ++ P + P Q P + Q + T S +A A E KQ+LGE+++PL+ ++AGKITGM LE+DN+ELL+M+E+ SL+ K+DEA+ VL AH
Sbjct: 4 AASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ-GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQA--QGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPTL---------RHLAP-TGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 597
BLAST of Polyadenylate-binding protein vs. Ensembl Human
Match: PABPC4 (poly(A) binding protein cytoplasmic 4 [Source:HGNC Symbol;Acc:HGNC:8557]) HSP 1 Score: 541.576 bits (1394), Expect = 0.000e+0 Identity = 300/626 (47.92%), Postives = 403/626 (64.38%), Query Frame = 2
Query: 83 ANPTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQR----STPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQR--GHQPQPV------FNPGMVNFMMNSNVQRPFMARPGNILQNRWPQTMPYIQPRNIGMPANQNIMMTGMPQNQQRRNIMVDPMMNQNRNARPITGNVQLNQTRP---QYNMVANGRQG-------------NNIMYQYP--IQDNQPMLNPDQMKMPDIESQ-IDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAH 1867
A + P ASLYVGDLH DVTEA+LYEKF G VLSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ I G+P RIMWSQRDP+ R+SGVGN+FIKNLD SI K + DTF+ FG I SCKV DENG SKG+AFV+F + A+KAI+ +NG ++ ++ V+V +F R +R K+FTN YIKNFG + D+SL++LF Q G+ +S KVM D G SKGFGFVS+++HEDA KAV +NG+ I K I+VGRA KK ERQ EL+ ++E+ +QER+ +++ GVNLYIKNL + I+DE+LR EF+ FG+ITSAKVML E+ SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR G + P F P + + + Q RP N+ Q P + + G P M + + Q+ R + R+ P TGN ++ P Q V Q Y+Y ++ P + P Q P + Q + T S +A A E KQ+LGE+++PL+ ++AGKITGM LE+DN+ELL+M+E+ SL+ K+DEA+ VL AH
Sbjct: 4 AASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ-GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQA--QGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPTL---------RHLAP-TGNAPASRGLPTTTQRVGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 613
BLAST of Polyadenylate-binding protein vs. Ensembl Human
Match: PABPC4 (poly(A) binding protein cytoplasmic 4 [Source:HGNC Symbol;Acc:HGNC:8557]) HSP 1 Score: 535.413 bits (1378), Expect = 0.000e+0 Identity = 299/629 (47.54%), Postives = 401/629 (63.75%), Query Frame = 2
Query: 83 ANPTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQR----STPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQR--GHQPQPV------FNPGMVNFMMNSNVQRPFMARPGNILQNRWPQTMPYIQPRNIGMPANQNIMMTGMPQNQQR---RNIMVDPMMNQNRNARPITGNVQLNQ---TRPQYNMVANGRQG-------------NNIMYQYP--IQDNQPMLNPDQMKMPDIESQ-IDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAH 1867
A + P ASLYVGDLH DVTEA+LYEKF G VLSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ I G+P RIMWSQRDP+ R+SGVGN+FIKNLD SI K + DTF+ FG I SCKV DENG SKG+AFV+F + A+KAI+ +NG ++ ++ V+V +F R +R K+FTN YIKNFG + D+SL++LF Q G+ +S KVM D G SKGFGFVS+++HEDA KAV +NG+ I K I+VGRA KK ERQ EL+ ++E+ +QER+ +++ GVNLYIKNL + I+DE+LR EF+ FG+ITSAKVML E+ SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR G + P F P + + + Q RP N+ Q P + + G P M + + Q+ R R++ +R A G Q Q V Q Y+Y ++ P + P Q P + Q + T S +A A E KQ+LGE+++PL+ ++AGKITGM LE+DN+ELL+M+E+ SL+ K+DEA+ VL AH
Sbjct: 4 AASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ-GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQA--QGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 626
BLAST of Polyadenylate-binding protein vs. Ensembl Human
Match: PABPC4 (poly(A) binding protein cytoplasmic 4 [Source:HGNC Symbol;Acc:HGNC:8557]) HSP 1 Score: 533.872 bits (1374), Expect = 0.000e+0 Identity = 301/643 (46.81%), Postives = 406/643 (63.14%), Query Frame = 2
Query: 83 ANPTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQR----STPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQR--GHQPQPV------FNPGMVNFMMNSNVQ---RPFMARPGNILQ----NRWP--------QTMPYIQPRNIGMPANQNIMMT-------GMPQNQQRRNIMVDPMMNQNRNA-----RPITGNVQLN------QTRPQYNMVANGRQGNNIMYQYP--IQDNQPMLNPDQMKMPDIESQ-IDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAH 1867
A + P ASLYVGDLH DVTEA+LYEKF G VLSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ I G+P RIMWSQRDP+ R+SGVGN+FIKNLD SI K + DTF+ FG I SCKV DENG SKG+AFV+F + A+KAI+ +NG ++ ++ V+V +F R +R K+FTN YIKNFG + D+SL++LF Q G+ +S KVM D G SKGFGFVS+++HEDA KAV +NG+ I K I+VGRA KK ERQ EL+ ++E+ +QER+ +++ GVNLYIKNL + I+DE+LR EF+ FG+ITSAKVML E+ SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR G + P F P + + + Q RP P + Q RW Q MP ++ P +++ T G+P QR + + + +T + Q Q VA Y+Y ++ P + P Q P + Q + T S +A A E KQ+LGE+++PL+ ++AGKITGM LE+DN+ELL+M+E+ SL+ K+DEA+ VL AH
Sbjct: 4 AASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ-GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTTTQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 642
BLAST of Polyadenylate-binding protein vs. Ensembl Celegans
Match: pab-1 (Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:Q7K797]) HSP 1 Score: 476.863 bits (1226), Expect = 2.019e-159 Identity = 290/631 (45.96%), Postives = 370/631 (58.64%), Query Frame = 2
Query: 104 ASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQR----STPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIE--DKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRGHQPQPVFNPGMVNFMMNSNVQ-----RPFMARPGNILQNRWPQTMPYIQPRNIGMPANQNIMMTGMP-QNQQRRNIMVDPMMNQNRNARPITGNVQLNQTRP--QYNMVANGRQGNNIMYQYPIQDNQPMLNPDQM-----------------KMPDIESQI-------------DLTTTSKIANADSMEAKQLLGEKIYPLVSK-YAGDM-AGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVL 1858
ASLYVGDLHPDV E+IL+EKF G VLSIRVCRD TR SLGYAYVN+Q +A+ AMD +NFE +HG+P RIMWSQRDPA RRSG GNIFIKNLD I K I DTF+ FG I SCKV DE+G SKG+ FV+F E A+ AIQ +NG ++ K V+V KF PR QR K FTN Y+KNFG H + ++L LF + G I S +VM EG SKGFGFV+F E+A AV L+ IE D ++V RA KK+ER EL+ ++E+ + ER+Q+++ GVNLY+KNL ++D+ L+ +F +GNITSAKVM + EN SKGFGFVCF P+EAT AV+EMN K+V KPLYVA+AQ+KEDR A L SQ+ QR + + M+ NV P PG + N Q + + + P + M P QNQ + P + QNR RP N Q P QYN VA G + Q P + P + + K P Q + T++ +A A E KQLLGE+IY L+ K Y G AGKITGM LE+DN+EL+ M+++ + K+DEA VL
Sbjct: 32 ASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMT-VEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQ-GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTD-ENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQLASQYMQR-----------LASMRMHGNVPGAAMYNPTQPGPGYYVANPMQQQRNFAGGQQMVRPGGRWGMQNQYPVQNQYM--MAQGPGVYQNRMGRPQ--NQQGGPRGPPQQYNQVAQG----GVRMQGPPRTQNPGVQQQNVPRPPQQQQQQRPAPTGPKAPPQPYQAYQQRPQGIVIGGQEPLTSAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVL 640
BLAST of Polyadenylate-binding protein vs. Ensembl Celegans
Match: pab-1 (Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:Q7K797]) HSP 1 Score: 476.863 bits (1226), Expect = 2.019e-159 Identity = 290/631 (45.96%), Postives = 370/631 (58.64%), Query Frame = 2
Query: 104 ASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQR----STPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIE--DKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRGHQPQPVFNPGMVNFMMNSNVQ-----RPFMARPGNILQNRWPQTMPYIQPRNIGMPANQNIMMTGMP-QNQQRRNIMVDPMMNQNRNARPITGNVQLNQTRP--QYNMVANGRQGNNIMYQYPIQDNQPMLNPDQM-----------------KMPDIESQI-------------DLTTTSKIANADSMEAKQLLGEKIYPLVSK-YAGDM-AGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVL 1858
ASLYVGDLHPDV E+IL+EKF G VLSIRVCRD TR SLGYAYVN+Q +A+ AMD +NFE +HG+P RIMWSQRDPA RRSG GNIFIKNLD I K I DTF+ FG I SCKV DE+G SKG+ FV+F E A+ AIQ +NG ++ K V+V KF PR QR K FTN Y+KNFG H + ++L LF + G I S +VM EG SKGFGFV+F E+A AV L+ IE D ++V RA KK+ER EL+ ++E+ + ER+Q+++ GVNLY+KNL ++D+ L+ +F +GNITSAKVM + EN SKGFGFVCF P+EAT AV+EMN K+V KPLYVA+AQ+KEDR A L SQ+ QR + + M+ NV P PG + N Q + + + P + M P QNQ + P + QNR RP N Q P QYN VA G + Q P + P + + K P Q + T++ +A A E KQLLGE+IY L+ K Y G AGKITGM LE+DN+EL+ M+++ + K+DEA VL
Sbjct: 32 ASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMT-VEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQ-GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTD-ENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQLASQYMQR-----------LASMRMHGNVPGAAMYNPTQPGPGYYVANPMQQQRNFAGGQQMVRPGGRWGMQNQYPVQNQYM--MAQGPGVYQNRMGRPQ--NQQGGPRGPPQQYNQVAQG----GVRMQGPPRTQNPGVQQQNVPRPPQQQQQQRPAPTGPKAPPQPYQAYQQRPQGIVIGGQEPLTSAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVL 640
BLAST of Polyadenylate-binding protein vs. Ensembl Celegans
Match: pab-1 (Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:Q7K797]) HSP 1 Score: 476.863 bits (1226), Expect = 2.019e-159 Identity = 290/631 (45.96%), Postives = 370/631 (58.64%), Query Frame = 2
Query: 104 ASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQR----STPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIE--DKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRGHQPQPVFNPGMVNFMMNSNVQ-----RPFMARPGNILQNRWPQTMPYIQPRNIGMPANQNIMMTGMP-QNQQRRNIMVDPMMNQNRNARPITGNVQLNQTRP--QYNMVANGRQGNNIMYQYPIQDNQPMLNPDQM-----------------KMPDIESQI-------------DLTTTSKIANADSMEAKQLLGEKIYPLVSK-YAGDM-AGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVL 1858
ASLYVGDLHPDV E+IL+EKF G VLSIRVCRD TR SLGYAYVN+Q +A+ AMD +NFE +HG+P RIMWSQRDPA RRSG GNIFIKNLD I K I DTF+ FG I SCKV DE+G SKG+ FV+F E A+ AIQ +NG ++ K V+V KF PR QR K FTN Y+KNFG H + ++L LF + G I S +VM EG SKGFGFV+F E+A AV L+ IE D ++V RA KK+ER EL+ ++E+ + ER+Q+++ GVNLY+KNL ++D+ L+ +F +GNITSAKVM + EN SKGFGFVCF P+EAT AV+EMN K+V KPLYVA+AQ+KEDR A L SQ+ QR + + M+ NV P PG + N Q + + + P + M P QNQ + P + QNR RP N Q P QYN VA G + Q P + P + + K P Q + T++ +A A E KQLLGE+IY L+ K Y G AGKITGM LE+DN+EL+ M+++ + K+DEA VL
Sbjct: 32 ASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMT-VEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQ-GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTD-ENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQLASQYMQR-----------LASMRMHGNVPGAAMYNPTQPGPGYYVANPMQQQRNFAGGQQMVRPGGRWGMQNQYPVQNQYM--MAQGPGVYQNRMGRPQ--NQQGGPRGPPQQYNQVAQG----GVRMQGPPRTQNPGVQQQNVPRPPQQQQQQRPAPTGPKAPPQPYQAYQQRPQGIVIGGQEPLTSAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVL 640
BLAST of Polyadenylate-binding protein vs. Ensembl Celegans
Match: pab-1 (Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:Q7K797]) HSP 1 Score: 476.863 bits (1226), Expect = 2.019e-159 Identity = 290/631 (45.96%), Postives = 370/631 (58.64%), Query Frame = 2
Query: 104 ASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQR----STPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIE--DKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRGHQPQPVFNPGMVNFMMNSNVQ-----RPFMARPGNILQNRWPQTMPYIQPRNIGMPANQNIMMTGMP-QNQQRRNIMVDPMMNQNRNARPITGNVQLNQTRP--QYNMVANGRQGNNIMYQYPIQDNQPMLNPDQM-----------------KMPDIESQI-------------DLTTTSKIANADSMEAKQLLGEKIYPLVSK-YAGDM-AGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVL 1858
ASLYVGDLHPDV E+IL+EKF G VLSIRVCRD TR SLGYAYVN+Q +A+ AMD +NFE +HG+P RIMWSQRDPA RRSG GNIFIKNLD I K I DTF+ FG I SCKV DE+G SKG+ FV+F E A+ AIQ +NG ++ K V+V KF PR QR K FTN Y+KNFG H + ++L LF + G I S +VM EG SKGFGFV+F E+A AV L+ IE D ++V RA KK+ER EL+ ++E+ + ER+Q+++ GVNLY+KNL ++D+ L+ +F +GNITSAKVM + EN SKGFGFVCF P+EAT AV+EMN K+V KPLYVA+AQ+KEDR A L SQ+ QR + + M+ NV P PG + N Q + + + P + M P QNQ + P + QNR RP N Q P QYN VA G + Q P + P + + K P Q + T++ +A A E KQLLGE+IY L+ K Y G AGKITGM LE+DN+EL+ M+++ + K+DEA VL
Sbjct: 32 ASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMT-VEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQ-GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTD-ENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQLASQYMQR-----------LASMRMHGNVPGAAMYNPTQPGPGYYVANPMQQQRNFAGGQQMVRPGGRWGMQNQYPVQNQYM--MAQGPGVYQNRMGRPQ--NQQGGPRGPPQQYNQVAQG----GVRMQGPPRTQNPGVQQQNVPRPPQQQQQQRPAPTGPKAPPQPYQAYQQRPQGIVIGGQEPLTSAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVL 640
BLAST of Polyadenylate-binding protein vs. Ensembl Celegans
Match: pab-1 (Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:Q7K797]) HSP 1 Score: 476.863 bits (1226), Expect = 2.019e-159 Identity = 290/631 (45.96%), Postives = 370/631 (58.64%), Query Frame = 2
Query: 104 ASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQR----STPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIE--DKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRGHQPQPVFNPGMVNFMMNSNVQ-----RPFMARPGNILQNRWPQTMPYIQPRNIGMPANQNIMMTGMP-QNQQRRNIMVDPMMNQNRNARPITGNVQLNQTRP--QYNMVANGRQGNNIMYQYPIQDNQPMLNPDQM-----------------KMPDIESQI-------------DLTTTSKIANADSMEAKQLLGEKIYPLVSK-YAGDM-AGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVL 1858
ASLYVGDLHPDV E+IL+EKF G VLSIRVCRD TR SLGYAYVN+Q +A+ AMD +NFE +HG+P RIMWSQRDPA RRSG GNIFIKNLD I K I DTF+ FG I SCKV DE+G SKG+ FV+F E A+ AIQ +NG ++ K V+V KF PR QR K FTN Y+KNFG H + ++L LF + G I S +VM EG SKGFGFV+F E+A AV L+ IE D ++V RA KK+ER EL+ ++E+ + ER+Q+++ GVNLY+KNL ++D+ L+ +F +GNITSAKVM + EN SKGFGFVCF P+EAT AV+EMN K+V KPLYVA+AQ+KEDR A L SQ+ QR + + M+ NV P PG + N Q + + + P + M P QNQ + P + QNR RP N Q P QYN VA G + Q P + P + + K P Q + T++ +A A E KQLLGE+IY L+ K Y G AGKITGM LE+DN+EL+ M+++ + K+DEA VL
Sbjct: 32 ASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMT-VEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQ-GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTD-ENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQLASQYMQR-----------LASMRMHGNVPGAAMYNPTQPGPGYYVANPMQQQRNFAGGQQMVRPGGRWGMQNQYPVQNQYM--MAQGPGVYQNRMGRPQ--NQQGGPRGPPQQYNQVAQG----GVRMQGPPRTQNPGVQQQNVPRPPQQQQQQRPAPTGPKAPPQPYQAYQQRPQGIVIGGQEPLTSAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVL 640
BLAST of Polyadenylate-binding protein vs. Ensembl Fly
Match: pAbp (gene:FBgn0265297 transcript:FBtr0086738) HSP 1 Score: 489.574 bits (1259), Expect = 2.080e-164 Identity = 292/646 (45.20%), Postives = 391/646 (60.53%), Query Frame = 2
Query: 104 ASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQR----STPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVI-EDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKS--GVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQF---------QQRGHQPQPVFNPGMVNFMMNSNVQRPFMARPGNILQN--RW-PQTMPYIQPRNI------------------GMPAN----QNIMMTGMPQNQQRRNIMVDPMMNQNRNARPITG------NVQLNQTRPQYNMVANGRQGNNIMYQYP----------IQDNQPMLNPDQMKMPDIESQIDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHK 1870
ASLYVGDL DV E+ L++KF + G VLSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ + +P RIMWSQRDP+ RRSGVGN+FIKNLD +I K I DTF+ FG I SCKV TDE G SKG+ FV+F E A +I +NG ++ K VYV KFIPR +R K FTN Y+KNF D+ L++ FE G+I S KVM ++G SKGFGFV+F+ E A AV LNG+ + E K++YV RA KKAERQ+EL+ ++E+ +Q+R H+S GVNLY+KNL + I+D+RLR F+ +GNITSAKVM ++E SKGFGFVCF+A EAT AV+E+NG++V KPLYVALAQ+KE+R AHL SQ+ QQ G QP G + SN QR F ++ ++N RW PQ P P I +P PQ Q +N AR ITG N+Q+ + +A G Q Y+Y + QP+ P Q++ + E I S +ANA E KQ+LGE++YP++ ++AGKITGM LE++N+ELL+MIE++ +LK K++EA+ VL H+
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKR---HESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGR-SKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHMTGMRMQQLGQIYQPNAASGFFVPTLPSN-QRFFGSQVATQMRNTPRWVPQVRP---PAAIQGVQAGAAAAGGFQGTAGAVPTQFRSAAAGARGAQPQVQGTHAAAAAANNMRNTGARAITGQQTAAPNMQIPGAQ-----IAGGAQQRTSNYKYTSNMRNPPVPQLHQTQPI--PQQLQGKNSEKLI----ASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQVHR 628
BLAST of Polyadenylate-binding protein vs. Ensembl Fly
Match: pAbp (gene:FBgn0265297 transcript:FBtr0086736) HSP 1 Score: 489.574 bits (1259), Expect = 2.080e-164 Identity = 292/646 (45.20%), Postives = 391/646 (60.53%), Query Frame = 2
Query: 104 ASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQR----STPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVI-EDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKS--GVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQF---------QQRGHQPQPVFNPGMVNFMMNSNVQRPFMARPGNILQN--RW-PQTMPYIQPRNI------------------GMPAN----QNIMMTGMPQNQQRRNIMVDPMMNQNRNARPITG------NVQLNQTRPQYNMVANGRQGNNIMYQYP----------IQDNQPMLNPDQMKMPDIESQIDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHK 1870
ASLYVGDL DV E+ L++KF + G VLSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ + +P RIMWSQRDP+ RRSGVGN+FIKNLD +I K I DTF+ FG I SCKV TDE G SKG+ FV+F E A +I +NG ++ K VYV KFIPR +R K FTN Y+KNF D+ L++ FE G+I S KVM ++G SKGFGFV+F+ E A AV LNG+ + E K++YV RA KKAERQ+EL+ ++E+ +Q+R H+S GVNLY+KNL + I+D+RLR F+ +GNITSAKVM ++E SKGFGFVCF+A EAT AV+E+NG++V KPLYVALAQ+KE+R AHL SQ+ QQ G QP G + SN QR F ++ ++N RW PQ P P I +P PQ Q +N AR ITG N+Q+ + +A G Q Y+Y + QP+ P Q++ + E I S +ANA E KQ+LGE++YP++ ++AGKITGM LE++N+ELL+MIE++ +LK K++EA+ VL H+
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKR---HESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGR-SKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHMTGMRMQQLGQIYQPNAASGFFVPTLPSN-QRFFGSQVATQMRNTPRWVPQVRP---PAAIQGVQAGAAAAGGFQGTAGAVPTQFRSAAAGARGAQPQVQGTHAAAAAANNMRNTGARAITGQQTAAPNMQIPGAQ-----IAGGAQQRTSNYKYTSNMRNPPVPQLHQTQPI--PQQLQGKNSEKLI----ASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQVHR 628
BLAST of Polyadenylate-binding protein vs. Ensembl Fly
Match: pAbp (gene:FBgn0265297 transcript:FBtr0086740) HSP 1 Score: 489.574 bits (1259), Expect = 2.080e-164 Identity = 292/646 (45.20%), Postives = 391/646 (60.53%), Query Frame = 2
Query: 104 ASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQR----STPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVI-EDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKS--GVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQF---------QQRGHQPQPVFNPGMVNFMMNSNVQRPFMARPGNILQN--RW-PQTMPYIQPRNI------------------GMPAN----QNIMMTGMPQNQQRRNIMVDPMMNQNRNARPITG------NVQLNQTRPQYNMVANGRQGNNIMYQYP----------IQDNQPMLNPDQMKMPDIESQIDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHK 1870
ASLYVGDL DV E+ L++KF + G VLSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ + +P RIMWSQRDP+ RRSGVGN+FIKNLD +I K I DTF+ FG I SCKV TDE G SKG+ FV+F E A +I +NG ++ K VYV KFIPR +R K FTN Y+KNF D+ L++ FE G+I S KVM ++G SKGFGFV+F+ E A AV LNG+ + E K++YV RA KKAERQ+EL+ ++E+ +Q+R H+S GVNLY+KNL + I+D+RLR F+ +GNITSAKVM ++E SKGFGFVCF+A EAT AV+E+NG++V KPLYVALAQ+KE+R AHL SQ+ QQ G QP G + SN QR F ++ ++N RW PQ P P I +P PQ Q +N AR ITG N+Q+ + +A G Q Y+Y + QP+ P Q++ + E I S +ANA E KQ+LGE++YP++ ++AGKITGM LE++N+ELL+MIE++ +LK K++EA+ VL H+
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKR---HESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGR-SKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHMTGMRMQQLGQIYQPNAASGFFVPTLPSN-QRFFGSQVATQMRNTPRWVPQVRP---PAAIQGVQAGAAAAGGFQGTAGAVPTQFRSAAAGARGAQPQVQGTHAAAAAANNMRNTGARAITGQQTAAPNMQIPGAQ-----IAGGAQQRTSNYKYTSNMRNPPVPQLHQTQPI--PQQLQGKNSEKLI----ASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQVHR 628
BLAST of Polyadenylate-binding protein vs. Ensembl Fly
Match: CG4612 (gene:FBgn0035016 transcript:FBtr0306137) HSP 1 Score: 150.984 bits (380), Expect = 2.705e-40 Identity = 79/189 (41.80%), Postives = 121/189 (64.02%), Query Frame = 2
Query: 374 IFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQRSTPNK-DFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIED-KTIYVGRAMKKAERQRELRTRYEKTRQERLQQ 934
I+IKNL+ SI K + DTF+ FG I +C V DE+G S+G+ FV+F+ E A AI+ +NG + + V+V KFIPR R F N Y+KN ++ LR++FE G I S K+M+D+EG S+ FGFV+++ + A+ AV L+G+ + D K +YV RA+ KAERQ+E+ + E+ ++++ Q
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKLEERKRQKAGQ 303 HSP 2 Score: 109.383 bits (272), Expect = 7.784e-26 Identity = 67/199 (33.67%), Postives = 110/199 (55.28%), Query Frame = 2
Query: 644 YIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGK-IVEGKPLYVALAQKKEDRVAHLRSQFQQRGHQ 1237
YIKN + +K++ D F G I++ V D++GNS+G+GFV F E A A+ +NG + ++ ++V + + + +R++E T ++ NLY+KNL E ++ LR F +G ITS K+ML++E S+ FGFV + P A AV ++GK + + K LYVA A K +R + + ++R Q
Sbjct: 116 YIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVNGMLCNNQKVHVVKFIPRRDREQEKATHFK--------------NLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEE-GRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKLEERKRQ 299 HSP 3 Score: 72.7886 bits (177), Expect = 1.630e-13 Identity = 44/172 (25.58%), Postives = 90/172 (52.33%), Query Frame = 2
Query: 110 LYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIM--WSQRD-PAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIRE-KIVYVAKFIPRTQR 613
+Y+ +L + +Y+ F GN+L+ V +D S GY +V++ A++A++ +N + + ++ +RD + + N+++KNL T + + + F +G I+S K+ DE G S+ F FV + + A A+ ++GK + + K +YVA+ + + +R
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKD-EDGNSRGYGFVHFDSEEAARAAIEKVNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAER 285
BLAST of Polyadenylate-binding protein vs. Ensembl Fly
Match: CG4612 (gene:FBgn0035016 transcript:FBtr0072346) HSP 1 Score: 150.984 bits (380), Expect = 2.705e-40 Identity = 79/189 (41.80%), Postives = 121/189 (64.02%), Query Frame = 2
Query: 374 IFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQRSTPNK-DFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIED-KTIYVGRAMKKAERQRELRTRYEKTRQERLQQ 934
I+IKNL+ SI K + DTF+ FG I +C V DE+G S+G+ FV+F+ E A AI+ +NG + + V+V KFIPR R F N Y+KN ++ LR++FE G I S K+M+D+EG S+ FGFV+++ + A+ AV L+G+ + D K +YV RA+ KAERQ+E+ + E+ ++++ Q
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKLEERKRQKAGQ 303 HSP 2 Score: 109.383 bits (272), Expect = 7.784e-26 Identity = 67/199 (33.67%), Postives = 110/199 (55.28%), Query Frame = 2
Query: 644 YIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGK-IVEGKPLYVALAQKKEDRVAHLRSQFQQRGHQ 1237
YIKN + +K++ D F G I++ V D++GNS+G+GFV F E A A+ +NG + ++ ++V + + + +R++E T ++ NLY+KNL E ++ LR F +G ITS K+ML++E S+ FGFV + P A AV ++GK + + K LYVA A K +R + + ++R Q
Sbjct: 116 YIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVNGMLCNNQKVHVVKFIPRRDREQEKATHFK--------------NLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEE-GRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKLEERKRQ 299 HSP 3 Score: 72.7886 bits (177), Expect = 1.630e-13 Identity = 44/172 (25.58%), Postives = 90/172 (52.33%), Query Frame = 2
Query: 110 LYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIM--WSQRD-PAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIRE-KIVYVAKFIPRTQR 613
+Y+ +L + +Y+ F GN+L+ V +D S GY +V++ A++A++ +N + + ++ +RD + + N+++KNL T + + + F +G I+S K+ DE G S+ F FV + + A A+ ++GK + + K +YVA+ + + +R
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKD-EDGNSRGYGFVHFDSEEAARAAIEKVNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAER 285
BLAST of Polyadenylate-binding protein vs. Ensembl Zebrafish
Match: pabpc4 (poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:ZFIN;Acc:ZDB-GENE-030131-9663]) HSP 1 Score: 534.643 bits (1376), Expect = 0.000e+0 Identity = 297/630 (47.14%), Postives = 402/630 (63.81%), Query Frame = 2
Query: 92 TIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQR----STPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQR--GHQPQPV------FNPGMVNFM--MNSNVQRPFMARPGNILQ----NRW--------------PQTMPYIQPR-NIG--MPANQNIMMTGMPQNQQRRNIMVDPMMNQNRNARPITGNVQLNQTRPQYNMVANGRQGN-NIMYQYPIQDNQPMLNPDQMKMPDIESQIDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHKG 1873
+ P ASLYVGDLHPD+TEA+LYEKF G VLSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ + G+P RIMWSQRDP+ R+SGVGN+FIKNLD SI K + DTF+ FG I SCKV DENG SKG+AFV+F + A++AI+ +NG ++ ++ V+V +F R +R K+FTN YIKNFG + D+ L++LF++ G+ +S KVM D G S+GFGFVS+++HEDA KAV +NG + KT++VGRA KK ERQ EL+ ++E+ +QER+ +++ GVNLYIKNL + I+DE+LR EF+ FG+ITSAKVML E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR G + P F P FM + R P + Q RW P ++ PR NI P N GMP QR PM RP G + + P Y + R ++ +Q QP ++ ++ Q L T S +A A E KQ+LGE+++PL+ +AGKITGM LE+DN+ELL+M+E+ SL+ K++EA+ VL AH+
Sbjct: 8 SYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQ-GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRIAGMRAMPANAIINQFQPAGGYFMPAVPQAQNRTTYYAPNQLTQMRPNPRWQQQGGRGQGGFQGMPSSLRQPGPRANIRHLAPNASNQGPRGMPTGAQRVGGTGQPM-----GPRPAMG-MTTPRAMPPYKYASTIRNTQPQVVQPIALQQAQPAVH--------VQGQEPL-TASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESHESLRSKVEEAVAVLQAHQA 618
BLAST of Polyadenylate-binding protein vs. Ensembl Zebrafish
Match: pabpc4 (poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:ZFIN;Acc:ZDB-GENE-030131-9663]) HSP 1 Score: 534.643 bits (1376), Expect = 0.000e+0 Identity = 297/630 (47.14%), Postives = 402/630 (63.81%), Query Frame = 2
Query: 92 TIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQR----STPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQR--GHQPQPV------FNPGMVNFM--MNSNVQRPFMARPGNILQ----NRW--------------PQTMPYIQPR-NIG--MPANQNIMMTGMPQNQQRRNIMVDPMMNQNRNARPITGNVQLNQTRPQYNMVANGRQGN-NIMYQYPIQDNQPMLNPDQMKMPDIESQIDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHKG 1873
+ P ASLYVGDLHPD+TEA+LYEKF G VLSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ + G+P RIMWSQRDP+ R+SGVGN+FIKNLD SI K + DTF+ FG I SCKV DENG SKG+AFV+F + A++AI+ +NG ++ ++ V+V +F R +R K+FTN YIKNFG + D+ L++LF++ G+ +S KVM D G S+GFGFVS+++HEDA KAV +NG + KT++VGRA KK ERQ EL+ ++E+ +QER+ +++ GVNLYIKNL + I+DE+LR EF+ FG+ITSAKVML E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR G + P F P FM + R P + Q RW P ++ PR NI P N GMP QR PM RP G + + P Y + R ++ +Q QP ++ ++ Q L T S +A A E KQ+LGE+++PL+ +AGKITGM LE+DN+ELL+M+E+ SL+ K++EA+ VL AH+
Sbjct: 8 SYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQ-GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRIAGMRAMPANAIINQFQPAGGYFMPAVPQAQNRTTYYAPNQLTQMRPNPRWQQQGGRGQGGFQGMPSSLRQPGPRANIRHLAPNASNQGPRGMPTGAQRVGGTGQPM-----GPRPAMG-MTTPRAMPPYKYASTIRNTQPQVVQPIALQQAQPAVH--------VQGQEPL-TASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESHESLRSKVEEAVAVLQAHQA 618
BLAST of Polyadenylate-binding protein vs. Ensembl Zebrafish
Match: pabpc1a (poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]) HSP 1 Score: 534.258 bits (1375), Expect = 0.000e+0 Identity = 299/641 (46.65%), Postives = 398/641 (62.09%), Query Frame = 2
Query: 89 PTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQRSTP----NKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRGHQPQPVFNPGMVNFMMNSNVQRPFMARPGNILQNRWPQTMPYIQPRNIGMPANQNIMMTGMPQNQQRRNIMVDPMMNQ---NRNARPITGNVQ-LNQTRPQYN---MVANGRQGNNIM---------------------YQY-----------PIQDNQPMLNPDQMKMPDIESQIDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHKGGEG 1882
P+ P ASLYVGDLHPDVTEA+LYEKF G +LSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ I GRP RIMWSQRDP+ R+SGVGNIFIKNLD SI K + DTF+ FG I SCKV DENG SKG+ FV+F AE+AI+ +NG ++ ++ V+V +F R +R K+FTN YIKNFG + D+ L+++F + G +S +VM D G SKGFGFVSF+ HEDA +AV+ +NG+ + K +YVGRA KK ERQ EL+ ++E+ +Q+R+ +++ GVNLY+KNL + ++DERLR EF+ FG ITSAKVM+ E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL SQ+ QR + V NP V P+ P + + +P Q R P +Q + P+ + V P Q N RP Q N RP M+ + R G+ M Y+Y P Q PM P ++ Q L T S +A A E KQ+LGE+++PL+ +AGKITGM LE+DN+ELL+M+E+ SL+ K+DEA+ VL AH+ E
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQ-GVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTSQYMQRMASVRAVPNP----------VLNPYQPAPPS---GYFMAAIPQAQNRAAYYPTSQLAQLRPSPRWATQG---VRPQHFQNMPNAAVRPSAPRPQTFNPVRPASQVPRMMTSQRMGSQAMGPRPAAAGAATGPAQVRGVPQYKYAPGVRNPQQHMPTQPQVPMQQPAV----HVQGQEPL-TASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 621
BLAST of Polyadenylate-binding protein vs. Ensembl Zebrafish
Match: pabpc1a (poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]) HSP 1 Score: 534.258 bits (1375), Expect = 0.000e+0 Identity = 299/641 (46.65%), Postives = 398/641 (62.09%), Query Frame = 2
Query: 89 PTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQRSTP----NKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRGHQPQPVFNPGMVNFMMNSNVQRPFMARPGNILQNRWPQTMPYIQPRNIGMPANQNIMMTGMPQNQQRRNIMVDPMMNQ---NRNARPITGNVQ-LNQTRPQYN---MVANGRQGNNIM---------------------YQY-----------PIQDNQPMLNPDQMKMPDIESQIDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHKGGEG 1882
P+ P ASLYVGDLHPDVTEA+LYEKF G +LSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ I GRP RIMWSQRDP+ R+SGVGNIFIKNLD SI K + DTF+ FG I SCKV DENG SKG+ FV+F AE+AI+ +NG ++ ++ V+V +F R +R K+FTN YIKNFG + D+ L+++F + G +S +VM D G SKGFGFVSF+ HEDA +AV+ +NG+ + K +YVGRA KK ERQ EL+ ++E+ +Q+R+ +++ GVNLY+KNL + ++DERLR EF+ FG ITSAKVM+ E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL SQ+ QR + V NP V P+ P + + +P Q R P +Q + P+ + V P Q N RP Q N RP M+ + R G+ M Y+Y P Q PM P ++ Q L T S +A A E KQ+LGE+++PL+ +AGKITGM LE+DN+ELL+M+E+ SL+ K+DEA+ VL AH+ E
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQ-GVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTSQYMQRMASVRAVPNP----------VLNPYQPAPPS---GYFMAAIPQAQNRAAYYPTSQLAQLRPSPRWATQG---VRPQHFQNMPNAAVRPSAPRPQTFNPVRPASQVPRMMTSQRMGSQAMGPRPAAAGAATGPAQVRGVPQYKYAPGVRNPQQHMPTQPQVPMQQPAV----HVQGQEPL-TASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 621
BLAST of Polyadenylate-binding protein vs. Ensembl Zebrafish
Match: pabpc1b (poly A binding protein, cytoplasmic 1 b [Source:ZFIN;Acc:ZDB-GENE-050308-1]) HSP 1 Score: 532.717 bits (1371), Expect = 0.000e+0 Identity = 298/633 (47.08%), Postives = 398/633 (62.88%), Query Frame = 2
Query: 89 PTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQRSTP----NKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRGHQ----PQPVFNPGM----VNFMMNS--NVQRPFMARPGNILQN-----RWPQTMPYIQPRNI-GMPANQNIMMTGMPQNQQ----RRNIMVDPMMNQNRNARPITGNVQLNQTR----------PQYNMVANGRQGNNIMYQYPIQDNQPMLNPDQMKMPDIESQ-IDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHKGGEG 1882
P+ P ASLYVGDLH DVTEA+LYEKF G +LSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ I GRP RIMWSQRDP+ R+SGVGNIFIKNLD SI K + DTF+ FG I SCKV DENG SKG+ FV+F + AE+AI+ +NG ++ ++ V+V +F R +R K+FTN YIKNFG + D L+D+F + G +S +VM D+ G S+GFGFVSF+ HEDA +AV+ +NG+ + K IYVGRA KK ERQ EL+ ++E+ +Q+R+ +++ GVNLY+KNL + I+DERLR EF+ FG ITSAKVM++ SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR P PV NP + M + Q P + L RW T ++P++ MP M P+ Q R V MM+ R A G PQY + R M + QP + M+ P + Q + T S +A A E KQ+LGE+++PL+ +AGKITGM LE+DN+ELL+M+E+ SL+ K+DEA+ VL AH+ E
Sbjct: 6 PSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQ-GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMD--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQAQNRAAYYPTSQLAQLRPSPRW--TTQGVRPQHFQNMPGT---MRPSAPRPQTFSTMRPASQVPRMMSTQRVATQTMGPRPSTAAAAASAPPVRGVPQYKYAPSVRNPQQHM------NTQPQVT---MQQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 620
BLAST of Polyadenylate-binding protein vs. Ensembl Xenopus
Match: tmem101 (transmembrane protein 101 [Source:Xenbase;Acc:XB-GENE-977590]) HSP 1 Score: 540.421 bits (1391), Expect = 0.000e+0 Identity = 305/633 (48.18%), Postives = 397/633 (62.72%), Query Frame = 2
Query: 89 PTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQRSTP----NKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRGHQ---PQPVFNPGM---VNFMMNSNVQRPFMARPGNILQ----NRWP---------QTMPYIQPRNIGMPANQNIMMTGMPQNQQRRNIMVDPMMN---QNRNARPITGNVQLN---QTRPQYNMVA---NGRQGNNIMYQYP---IQDNQPMLNPDQMKMPDIESQIDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHKGGEG 1882
P+ P ASLYVGDLHPDVTEA+LYEKF G +LSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ I G+P RIMWSQRDP+ R+SGVGNIFIKNLD SI K + DTF+ FG I SCKV DENG SKG+ FV+F + AE+AI +NG ++ ++ V+V +F R +R K+FTN YIKNFG + D+ L+++F + G +S KVM D G SKGFGFVSF+ HEDA KAV+ +NG+ + K IYVGRA KK ERQ EL+ ++E+ +Q+R+ +++ GVNLY+KNL + I+DERLR EF+ FG ITSAKVM+ E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR P PV NP ++ M N R PG I Q RW Q MP P + M NQ R + + N Q RP T +T PQY A N +Q N Q P +Q +P+ T S +A A E KQ+LGE+++PL+ +AGKITGM LE+DN+ELL+M+E+ SL+ K+DEA+ VL AH+ E
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYVGRAQKKVERQTELKRKFEQMKQDRITRYQ-GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRVPNPVINPYQPPPSSYFMAQN--RAAYYPPGQIAQLRPSPRWTAQGARPHPFQNMPGAIRPTAPRPPTFSTMRPA--SNQVPRVVSAQRVANTSTQTMGPRPTTAAAAATSAVRTVPQYKYAAGVRNPQQHLNTQPQVPAVHVQGQEPL------------------TASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 612
BLAST of Polyadenylate-binding protein vs. Ensembl Xenopus
Match: pabpc4 (poly(A) binding protein cytoplasmic 4 [Source:NCBI gene;Acc:548470]) HSP 1 Score: 535.028 bits (1377), Expect = 0.000e+0 Identity = 296/633 (46.76%), Postives = 405/633 (63.98%), Query Frame = 2
Query: 83 ANPTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQR----STPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQR--GHQPQPV------FNPGMVNFMMNSNVQRPFMARPGNILQNRWPQTMPYIQPRNIGMPANQNIMMTGMPQNQQRRNIMVDPMMNQ--NRNARPIT-----GNVQLNQTRPQYNMVANGRQGNNIM-------------YQY---PIQDNQPMLNPDQMKMPDIESQ-IDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHKG 1873
A + P ASLYVGDLHPDVTEA+LYEKF G VLSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ I G+P RIMWSQRDP+ R+SGVGN+FIKNLD SI K + DTF+ FG I SCKV DENG SKG+AFV+F + A++AI+ +NG ++ ++ V+V +F R +R K+FTN YIKNFG + D+ L++ F + G+ +S KVM D G SKGFGFVSF+ HEDA KAV+ +NG+ + K ++VGRA KK ERQ EL+ R+E+ +QER+ +++ GVNLYIKNL + I+DE+LR EF+ FG+ITSAKVML E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR G + P F P + + + Q +RP N Q P + + G P M + Q+ R+++ P N R +T ++Q +N V++ Q Y+Y P+ QP+ P P + Q + T S +A+A E KQ+LGE+++PL+ +AGKITGM LE+DN+ELL+M+E+ SL+ K++EA+ VL AH+
Sbjct: 4 AASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREAELGAKAKEFTNVYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPSGKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQERISRYQ-GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRIAGMRALPANTLINQFQPAPGGYFVPAVPQT--QSRPTYYAPNHMAQIRPGPRWQQTGRPQGFQPMPNTLRQSGPRQSLRHMPPSNTQGTRGIPSVTQRVGKKHIQTCAFALHFNRVSSSTQTMGPRPPVSAPPPRAVPPYKYTRCPLPGVQPLQTPQ----PAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVEEAVAVLQAHQA 626
BLAST of Polyadenylate-binding protein vs. Ensembl Xenopus
Match: tmem101 (transmembrane protein 101 [Source:Xenbase;Acc:XB-GENE-977590]) HSP 1 Score: 533.872 bits (1374), Expect = 0.000e+0 Identity = 295/613 (48.12%), Postives = 387/613 (63.13%), Query Frame = 2
Query: 89 PTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQRSTP----NKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRGHQ---PQPVFNPGMVNFMMNSNVQRP----FMARPGNILQNRWPQTMPYIQPRNIGMPANQNIMMTGMPQNQQRRNIMVDPMMNQNRNARPITGNVQLN---QTRPQYNMVANGRQGNNIMYQYPIQDNQPMLNPDQMKMPDIESQ-IDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHKGGEG 1882
P+ P ASLYVGDLHPDVTEA+LYEKF G +LSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ I G+P RIMWSQRDP+ R+SGVGNIFIKNLD SI K + DTF+ FG I SCKV DENG SKG+ FV+F + AE+AI +NG ++ ++ V+V +F R +R K+FTN YIKNFG + D+ L+++F + G +S KVM D G SKGFGFVSF+ HEDA KAV+ +NG+ + K IYVGRA KK ERQ EL+ ++E+ +Q+R+ +++ GVNLY+KNL + I+DERLR EF+ FG ITSAKVM+ E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR P PV NP Q P FMA +P Q R P Q + P+ + Q RP T +T PQY A R + P + + P + Q + T S +A A E KQ+LGE+++PL+ +AGKITGM LE+DN+ELL+M+E+ SL+ K+DEA+ VL AH+ E
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYVGRAQKKVERQTELKRKFEQMKQDRITRYQ-GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRVPNPVINP----------YQPPPSSYFMA------------AIPPAQNRAAYYPPGQIAQLRPSPRWTAQGARPHPNTSTQTMGPRPTTAAAAATSAVRTVPQYKYAAGVRNPQQHLNTQPQTALYTTILITCLLQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 592
BLAST of Polyadenylate-binding protein vs. Ensembl Xenopus
Match: tmem101 (transmembrane protein 101 [Source:Xenbase;Acc:XB-GENE-977590]) HSP 1 Score: 531.176 bits (1367), Expect = 1.428e-180 Identity = 307/627 (48.96%), Postives = 396/627 (63.16%), Query Frame = 2
Query: 89 PTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQRSTP----NKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRGHQ---PQPVFNPGMVNFMMNSNVQRP----FMAR--PGNILQ----NRWP----QTMP-YIQPRNIGMPANQNIMMTGMPQNQQRRNIMVDPMMN---QNRNARPITGNVQLN---QTRPQYNMVANGRQGNNIMYQYPIQDNQPMLNPDQMKMPDIESQ-IDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHKGGEG 1882
P+ P ASLYVGDLHPDVTEA+LYEKF G +LSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ I G+P RIMWSQRDP+ R+SGVGNIFIKNLD SI K + DTF+ FG I SCKV DENG SKG+ FV+F + AE+AI +NG ++ ++ V+V +F R +R K+FTN YIKNFG + D+ L+++F + +S KVM D G SKGFGFVSF+ HEDA KAV+ +NG+ + K IYVGRA KK ERQ EL+ ++E+ +Q+R+ +++ GVNLY+KNL + I+DERLR EF+ FG ITSAKVM+ E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR P PV NP Q P FMA P I Q RW Q MP I+P P + M NQ R + + N Q RP T +T PQY A R N Q M N P + Q + T S +A A E KQ+LGE+++PL+ +AGKITGM LE+DN+ELL+M+E+ SL+ K+DEA+ VL AH+ E
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEMFGKYA--LSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYVGRAQKKVERQTELKRKFEQMKQDRITRYQ-GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRVPNPVINP----------YQPPPSSYFMAAIPPVCIAQLRPSPRWTAQAFQNMPGAIRP-TAPRPPTFSTMRPA--SNQVPRVVSAQRVANTSTQTMGPRPTTAAAAATSAVRTVPQYKYAAGVR---NPQQHLNTQPQVAMQNIHNFPRPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 610
BLAST of Polyadenylate-binding protein vs. Ensembl Xenopus
Match: tmem101 (transmembrane protein 101 [Source:Xenbase;Acc:XB-GENE-977590]) HSP 1 Score: 528.865 bits (1361), Expect = 1.389e-179 Identity = 301/630 (47.78%), Postives = 397/630 (63.02%), Query Frame = 2
Query: 89 PTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQRSTP----NKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRGHQ---PQPVFN----PGMVNFM--MNSNVQRPFMARPGNILQ----NRWP---------QTMP-YIQPRNIGMPANQNIMMTG--MPQNQQRRNIMVDPMMNQNRNARPITGNVQLN---QTRPQYNMVANGRQGNNIMYQYPIQDNQPMLNPDQMKMPDIESQIDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHKGGEG 1882
P+ P ASLYVGDLHPDVTEA+LYEKF G +LSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ I G+P RIMWSQRDP+ R+SGVGNIFIKNLD SI K + DTF+ FG I SCKV DENG SKG+ FV+F + AE+AI +NG ++ ++ V+V +F R +R K+FTN YIKNFG + D+ L+++F + G +S KVM D G SKGFGFVSF+ HEDA KAV+ +NG+ + K IYVGRA KK ERQ EL+ ++E+ +Q+R+ +++ GVNLY+KNL + I+DERLR EF+ FG ITSAKVM+ E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR P PV N P FM + R PG I Q RW Q MP I+P P + +P+ + + Q RP T +T PQY A I+ +Q P ++ ++ Q LT S +A A E KQ+LGE+++PL+ +AGKITGM LE+DN+ELL+M+E+ SL+ K+DEA+ VL AH+ E
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYVGRAQKKVERQTELKRKFEQMKQDRITRYQ-GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRVPNPVINPYQPPPSSYFMAAIPPAQNRAAYYPPGQIAQLRPSPRWTAQGARPHPFQNMPGAIRPTAPRPPTFSTMRPASNQVPRVVSAQRVGKANTSTQTMGPRPTTAAAAATSAVRTVPQYKYTA---LYTTILITCLLQ---PAVH--------VQGQEPLTA-SMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 616
BLAST of Polyadenylate-binding protein vs. Ensembl Mouse
Match: Pabpc1 (poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]) HSP 1 Score: 545.043 bits (1403), Expect = 0.000e+0 Identity = 302/630 (47.94%), Postives = 399/630 (63.33%), Query Frame = 2
Query: 89 PTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQRSTP----NKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRGHQ----PQPVFNP-------GMVNFMMNSNVQRPFMARPGNILQ----NRW----PQTMPYI-QPRNIGMPANQNIMMTGMPQNQQRRNIM----VDPMMNQNRNARPITGNVQLN---QTRPQYNMVANGRQGNNIMYQYPIQDNQPMLNPDQMKMPDIESQ-IDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHKGGEG 1882
P+ P ASLYVGDLHPDVTEA+LYEKF G +LSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ I G+P RIMWSQRDP+ R+SGVGNIFIKNLD SI K + DTF+ FG I SCKV DENG SKG+ FV+F + AE+AI+ +NG ++ ++ V+V +F R +R K+FTN YIKNFG + D+ L++LF + G +S KVM D+ G SKGFGFVSF+ HEDA KAV+ +NG+ + K IYVGRA KK ERQ EL+ ++E+ +Q+R+ +++ GVNLY+KNL + I+DERLR EF+ FG ITSAKVM+ E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR P PV NP G + R P I Q RW + P+ P I A + T P + Q +M V Q RP +T PQY A R + + QP + M+ P + Q + T S +A+A E KQ+LGE+++PL+ +AGKITGM LE+DN+ELL+M+E+ SL+ K+DEA+ VL AH+ E
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQ-GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHL------NAQPQVT---MQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
BLAST of Polyadenylate-binding protein vs. Ensembl Mouse
Match: Pabpc4 (poly(A) binding protein, cytoplasmic 4 [Source:MGI Symbol;Acc:MGI:2385206]) HSP 1 Score: 537.339 bits (1383), Expect = 0.000e+0 Identity = 296/626 (47.28%), Postives = 401/626 (64.06%), Query Frame = 2
Query: 83 ANPTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQR----STPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQR--GHQPQPV------FNPGMVNFMMNSNVQRPFMARPGNILQNRWPQTMPYIQPRNIGMPANQNIMMTGMPQNQQRRNIMVDPMMNQNRNARPITGNVQLNQTRPQY-------NMVAN---------GRQGNNIMYQYP--IQDNQPMLNPDQMKMPDIESQ-IDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAH 1867
A + P ASLYVGDLH DVTEA+LYEKF G VLSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ + G+P RIMWSQRDP+ R+SGVGN+FIKNLD SI K + DTF+ FG I SCKV DENG SKG+AFV+F + A+KAI+ +NG ++ ++ V+V +F R +R K+FTN YIKNFG + D +L++LF Q G+ +S KVM D G SKGFGFVS+++HEDA KAV +NG+ + K I+VGRA KK ERQ EL+ ++E+ +QER+ +++ GVNLYIKNL + I+DE+LR EF+ FG+ITSAKVML E+ SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR G + P F P + + + Q RP N+ Q P + + G P M + + Q+ R + R+ P TGN ++ P V N Y+Y ++ P + P Q P + Q + T S +A A E KQ+LGE+++PL+ ++AGKITGM LE+DN+ELL+M+E+ SL+ K+DEA+ VL AH
Sbjct: 4 AASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQ-GVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPASAILNQFQPAAGGYFVPAVPQA--QGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSALRQSGPRPAL---------RHLAP-TGNAPASRGLPTTAQRVGVPTAVPNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 613
BLAST of Polyadenylate-binding protein vs. Ensembl Mouse
Match: Pabpc4 (poly(A) binding protein, cytoplasmic 4 [Source:MGI Symbol;Acc:MGI:2385206]) HSP 1 Score: 536.954 bits (1382), Expect = 0.000e+0 Identity = 294/610 (48.20%), Postives = 397/610 (65.08%), Query Frame = 2
Query: 83 ANPTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQR----STPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQR--GHQPQPV------FNPGMVNFMMNSNVQRPFMARPGNILQNRWPQTMPYIQPRNIGMPANQNIMMTGMPQNQQRRNIMVDPMMNQNRNARPITGNVQLNQTRPQYNMVANGRQGNNIMYQYP--IQDNQPMLNPDQMKMPDIESQ-IDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAH 1867
A + P ASLYVGDLH DVTEA+LYEKF G VLSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ + G+P RIMWSQRDP+ R+SGVGN+FIKNLD SI K + DTF+ FG I SCKV DENG SKG+AFV+F + A+KAI+ +NG ++ ++ V+V +F R +R K+FTN YIKNFG + D +L++LF Q G+ +S KVM D G SKGFGFVS+++HEDA KAV +NG+ + K I+VGRA KK ERQ EL+ ++E+ +QER+ +++ GVNLYIKNL + I+DE+LR EF+ FG+ITSAKVML E+ SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR G + P F P + + + Q RP N+ Q P + + G P M + + Q+ R + R+ P TG VA Y+Y ++ P + P Q P + Q + T S +A A E KQ+LGE+++PL+ ++AGKITGM LE+DN+ELL+M+E+ SL+ K+DEA+ VL AH
Sbjct: 4 AASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQ-GVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPASAILNQFQPAAGGYFVPAVPQA--QGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSALRQSGPRPAL---------RHLAP-TGVPTAVPNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 597
BLAST of Polyadenylate-binding protein vs. Ensembl Mouse
Match: Pabpc4 (poly(A) binding protein, cytoplasmic 4 [Source:MGI Symbol;Acc:MGI:2385206]) HSP 1 Score: 531.946 bits (1369), Expect = 1.410e-180 Identity = 294/639 (46.01%), Postives = 402/639 (62.91%), Query Frame = 2
Query: 83 ANPTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQR----STPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQR--GHQPQPV------FNPGMVNFMMNSNVQRPFMARPGNILQNRWPQTMPYIQPRNIGMPANQNIMMTGMPQNQQRRNIMVDPMMNQNRNARPITGNVQLNQTRPQYNMVANGRQG-----------------------------NNIMYQYP--IQDNQPMLNPDQMKMPDIESQ-IDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAH 1867
A + P ASLYVGDLH DVTEA+LYEKF G VLSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ + G+P RIMWSQRDP+ R+SGVGN+FIKNLD SI K + DTF+ FG I SCKV DENG SKG+AFV+F + A+KAI+ +NG ++ ++ V+V +F R +R K+FTN YIKNFG + D +L++LF Q G+ +S KVM D G SKGFGFVS+++HEDA KAV +NG+ + K I+VGRA KK ERQ EL+ ++E+ +QER+ +++ GVNLYIKNL + I+DE+LR EF+ FG+ITSAKVML E+ SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR G + P F P + + + Q RP N+ Q P + + G P M + + Q+ R + R+ P TG+ ++ + +QG Y+Y ++ P + P Q P + Q + T S +A A E KQ+LGE+++PL+ ++AGKITGM LE+DN+ELL+M+E+ SL+ K+DEA+ VL AH
Sbjct: 4 AASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQ-GVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPASAILNQFQPAAGGYFVPAVPQA--QGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSALRQSGPRPAL---------RHLAP-TGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVPNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 626
BLAST of Polyadenylate-binding protein vs. Ensembl Mouse
Match: Pabpc4 (poly(A) binding protein, cytoplasmic 4 [Source:MGI Symbol;Acc:MGI:2385206]) HSP 1 Score: 531.561 bits (1368), Expect = 2.880e-180 Identity = 300/643 (46.66%), Postives = 404/643 (62.83%), Query Frame = 2
Query: 83 ANPTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQR----STPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQR--GHQPQPV------FNPGMVNFMMNSNVQ---RPFMARPGNILQ----NRWP--------QTMPYIQPRNIGMPANQNIMMT-------GMPQNQQR------RNIMVD----PMMNQNRNARPITGNVQL---NQTRPQYNMVANGRQGNNIMYQYPIQDNQPMLNPDQMKMPDIESQ-IDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAH 1867
A + P ASLYVGDLH DVTEA+LYEKF G VLSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ + G+P RIMWSQRDP+ R+SGVGN+FIKNLD SI K + DTF+ FG I SCKV DENG SKG+AFV+F + A+KAI+ +NG ++ ++ V+V +F R +R K+FTN YIKNFG + D +L++LF Q G+ +S KVM D G SKGFGFVS+++HEDA KAV +NG+ + K I+VGRA KK ERQ EL+ ++E+ +QER+ +++ GVNLYIKNL + I+DE+LR EF+ FG+ITSAKVML E+ SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR G + P F P + + + Q RP P + Q RW Q MP ++ PA +++ T G+P QR + +D Q +G V N A R Y ++ P + P Q P + Q + T S +A A E KQ+LGE+++PL+ ++AGKITGM LE+DN+ELL+M+E+ SL+ K+DEA+ VL AH
Sbjct: 4 AASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQ-GVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPASAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSALRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVPNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 642
BLAST of Polyadenylate-binding protein vs. UniProt/SwissProt
Match: sp|P11940|PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens OX=9606 GN=PABPC1 PE=1 SV=2) HSP 1 Score: 546.584 bits (1407), Expect = 0.000e+0 Identity = 303/630 (48.10%), Postives = 399/630 (63.33%), Query Frame = 2
Query: 89 PTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQRSTP----NKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRGHQ----PQPVFNP-------GMVNFMMNSNVQRPFMARPGNILQ----NRW----PQTMPYI-QPRNIGMPANQNIMMTGMPQNQQRRNIM----VDPMMNQNRNARPITGNVQLN---QTRPQYNMVANGRQGNNIMYQYPIQDNQPMLNPDQMKMPDIESQ-IDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHKGGEG 1882
P+ P ASLYVGDLHPDVTEA+LYEKF G +LSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ I G+P RIMWSQRDP+ R+SGVGNIFIKNLD SI K + DTF+ FG I SCKV DENG SKG+ FV+F + AE+AI+ +NG ++ ++ V+V +F R +R K+FTN YIKNFG + D+ L+DLF + G +S KVM D+ G SKGFGFVSF+ HEDA KAV+ +NG+ + K IYVGRA KK ERQ EL+ ++E+ +Q+R+ +++ GVNLY+KNL + I+DERLR EF+ FG ITSAKVM+ E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR P PV NP G + R P I Q RW + P+ P I A + T P + Q +M V Q RP +T PQY A R + + QP + M+ P + Q + T S +A+A E KQ+LGE+++PL+ +AGKITGM LE+DN+ELL+M+E+ SL+ K+DEA+ VL AH+ E
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQ-GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHL------NAQPQVT---MQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
BLAST of Polyadenylate-binding protein vs. UniProt/SwissProt
Match: sp|P61286|PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus OX=9913 GN=PABPC1 PE=2 SV=1) HSP 1 Score: 546.584 bits (1407), Expect = 0.000e+0 Identity = 303/630 (48.10%), Postives = 399/630 (63.33%), Query Frame = 2
Query: 89 PTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQRSTP----NKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRGHQ----PQPVFNP-------GMVNFMMNSNVQRPFMARPGNILQ----NRW----PQTMPYI-QPRNIGMPANQNIMMTGMPQNQQRRNIM----VDPMMNQNRNARPITGNVQLN---QTRPQYNMVANGRQGNNIMYQYPIQDNQPMLNPDQMKMPDIESQ-IDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHKGGEG 1882
P+ P ASLYVGDLHPDVTEA+LYEKF G +LSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ I G+P RIMWSQRDP+ R+SGVGNIFIKNLD SI K + DTF+ FG I SCKV DENG SKG+ FV+F + AE+AI+ +NG ++ ++ V+V +F R +R K+FTN YIKNFG + D+ L+DLF + G +S KVM D+ G SKGFGFVSF+ HEDA KAV+ +NG+ + K IYVGRA KK ERQ EL+ ++E+ +Q+R+ +++ GVNLY+KNL + I+DERLR EF+ FG ITSAKVM+ E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR P PV NP G + R P I Q RW + P+ P I A + T P + Q +M V Q RP +T PQY A R + + QP + M+ P + Q + T S +A+A E KQ+LGE+++PL+ +AGKITGM LE+DN+ELL+M+E+ SL+ K+DEA+ VL AH+ E
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQ-GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHL------NAQPQVT---MQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
BLAST of Polyadenylate-binding protein vs. UniProt/SwissProt
Match: sp|P29341|PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus OX=10090 GN=Pabpc1 PE=1 SV=2) HSP 1 Score: 545.043 bits (1403), Expect = 0.000e+0 Identity = 302/630 (47.94%), Postives = 399/630 (63.33%), Query Frame = 2
Query: 89 PTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQRSTP----NKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRGHQ----PQPVFNP-------GMVNFMMNSNVQRPFMARPGNILQ----NRW----PQTMPYI-QPRNIGMPANQNIMMTGMPQNQQRRNIM----VDPMMNQNRNARPITGNVQLN---QTRPQYNMVANGRQGNNIMYQYPIQDNQPMLNPDQMKMPDIESQ-IDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHKGGEG 1882
P+ P ASLYVGDLHPDVTEA+LYEKF G +LSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ I G+P RIMWSQRDP+ R+SGVGNIFIKNLD SI K + DTF+ FG I SCKV DENG SKG+ FV+F + AE+AI+ +NG ++ ++ V+V +F R +R K+FTN YIKNFG + D+ L++LF + G +S KVM D+ G SKGFGFVSF+ HEDA KAV+ +NG+ + K IYVGRA KK ERQ EL+ ++E+ +Q+R+ +++ GVNLY+KNL + I+DERLR EF+ FG ITSAKVM+ E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR P PV NP G + R P I Q RW + P+ P I A + T P + Q +M V Q RP +T PQY A R + + QP + M+ P + Q + T S +A+A E KQ+LGE+++PL+ +AGKITGM LE+DN+ELL+M+E+ SL+ K+DEA+ VL AH+ E
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQ-GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHL------NAQPQVT---MQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
BLAST of Polyadenylate-binding protein vs. UniProt/SwissProt
Match: sp|Q5R8F7|PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii OX=9601 GN=PABPC1 PE=2 SV=1) HSP 1 Score: 544.658 bits (1402), Expect = 0.000e+0 Identity = 302/630 (47.94%), Postives = 398/630 (63.17%), Query Frame = 2
Query: 89 PTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQRSTP----NKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRGHQ----PQPVFNP-------GMVNFMMNSNVQRPFMARPGNILQ----NRW----PQTMPYI-QPRNIGMPANQNIMMTGMPQNQQRRNIM----VDPMMNQNRNARPITGNVQLN---QTRPQYNMVANGRQGNNIMYQYPIQDNQPMLNPDQMKMPDIESQ-IDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHKGGEG 1882
P+ P ASLYVGDLHPD TEA+LYEKF G +LSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ I G+P RIMWSQRDP+ R+SGVGNIFIKNLD SI K + DTF+ FG I SCKV DENG SKG+ FV+F + AE+AI+ +NG ++ ++ V+V +F R +R K+FTN YIKNFG + D+ L+DLF + G +S KVM D+ G SKGFGFVSF+ HEDA KAV+ +NG+ + K IYVGRA KK ERQ EL+ ++E+ +Q+R+ +++ GVNLY+KNL + I+DERLR EF+ FG ITSAKVM+ E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR P PV NP G + R P I Q RW + P+ P I A + T P + Q +M V Q RP +T PQY A R + + QP + M+ P + Q + T S +A+A E KQ+LGE+++PL+ +AGKITGM LE+DN+ELL+M+E+ SL+ K+DEA+ VL AH+ E
Sbjct: 6 PSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQ-GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHL------NAQPQVT---MQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
BLAST of Polyadenylate-binding protein vs. UniProt/SwissProt
Match: sp|Q9EPH8|PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus OX=10116 GN=Pabpc1 PE=1 SV=1) HSP 1 Score: 540.036 bits (1390), Expect = 0.000e+0 Identity = 302/630 (47.94%), Postives = 399/630 (63.33%), Query Frame = 2
Query: 89 PTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQRSTP----NKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRGHQ----PQPVFNP-------GMVNFMMNSNVQRPFMARPGNILQ----NRW----PQTMPYI-QPRNIGMPANQNIMMTGMPQNQQRRNIM----VDPMMNQNRNARPITGNVQLN---QTRPQYNMVANGRQGNNIMYQYPIQDNQPMLNPDQMKMPDIESQ-IDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHKGGEG 1882
P+ P ASLYVGDLHPDVTEA+LYEKF G +LSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ I G+P RIMWSQRDP+ R+SGVGNIFIKNLD SI K + DTF+ FG I SCKV DENG SKG+ FV+F + AE+AI+ +NG ++ ++ V+V +F R +R K+FTN YIKNFG + D+ L++LF + G +S KVM D+ G SKGFGFVSF+ HEDA KAV+ +NG+ + K IYVGRA KK ERQ EL+ ++E+ +Q+R+ +++ GVNLY+KNL + I+DERLR EF+ FG ITSAKVM+ E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR P PV NP G + R P I Q RW + P+ P I A + T P + Q +M V Q RP +T PQY A R + + QP + M+ P + Q + T S +A+A E KQ+LGE+++PL+ +AGKITGM LE+DN+ELL+M+E+ SL+ K+DEA+ VL AH+ E
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQ-GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAATAATPAVRTVPQYKYAAGVRNPQQHL------NAQPQVT---MQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
BLAST of Polyadenylate-binding protein vs. TrEMBL
Match: A0A2J7QJ01 (Polyadenylate-binding protein OS=Cryptotermes secundus OX=105785 GN=Pabpc1_1 PE=3 SV=1) HSP 1 Score: 564.688 bits (1454), Expect = 0.000e+0 Identity = 316/637 (49.61%), Postives = 408/637 (64.05%), Query Frame = 2
Query: 83 ANPTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQR----STPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGR-VIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQR---------GHQPQPVFNPGMVNFMMNSNVQRP--FMARPGNILQ----NRW---PQTMPYIQPRNIGMPANQNIMMTGMPQNQQRRNIMVDP-MMNQNRNARPITG-------NVQLNQTRPQYNMVANGRQGNNIMYQYPIQDNQPMLNPDQ----MKMPDIESQIDL-----TTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHKG 1873
P P ASLYVGDLH DVTEA+L+EKF T G VLSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ I GRP RIMWSQRDP+ R+SGVGN+FIKNLD SI K + DTF+ FG I SCKV DE G SKG+ FV+F E A K+I+ +NG ++ K V+V KF+PR +R K FTN YIKNFG +D+ LR++FE+ G+I S KVM +G S+GFGFV+F+E EDA +AV+ LNG+ +IE K +YVGRA KKAERQ+EL+ ++E+ + ERL +++ GVNLY+KNL + I+DERLR EF +G ITSAKVML E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KEDR AHL SQ+ QR G Q +F PG + +P F P + Q RW PQ P Q G P Q T R P M +ARPITG N+Q P ++ A GRQ N Y+Y M NP Q + P ++ + + T S +A A E KQ+LGE+++PL+ + D+AGKITGM LE+DN+ELL+M+E+ SLK K++EA+ VL AH+
Sbjct: 4 GGPNYPMASLYVGDLHHDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAATKSIEKVNGMLLNGKKVFVGKFVPRKEREKELGEKAKLFTNVYIKNFGEDFNDELLREMFEKYGQITSHKVMSKDDGKSRGFGFVAFEEPEDAERAVDELNGKELIEGKPLYVGRAQKKAERQQELKRKFEQLKIERLNRYQ-GVNLYVKNLDDTIDDERLRKEFTPYGTITSAKVML--EEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLASQYMQRMANMRMQQMGTQ---MFQPGGAGGYFVPTLPQPQRFYG-PAQMAQIRATPRWPAQPQVRPSAQAGASGFPNMQGPFRTA------PRAPGAQPGSMRNALSARPITGQQPVGAANIQGRPMAPTVSVSAQGRQTN---YKYTAN----MRNPPQPIPVAQQPPVQQAVHIQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQRMYPDLAGKITGMLLEIDNSELLHMLEHHESLKAKVEEAVAVLQAHQA 620
BLAST of Polyadenylate-binding protein vs. TrEMBL
Match: A0A087T5F4 (Polyadenylate-binding protein (Fragment) OS=Stegodyphus mimosarum OX=407821 GN=X975_02472 PE=3 SV=1) HSP 1 Score: 564.303 bits (1453), Expect = 0.000e+0 Identity = 316/647 (48.84%), Postives = 411/647 (63.52%), Query Frame = 2
Query: 83 ANPTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQR----STPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQR--GHQPQ--PVFNPGMVNFMMNS--NVQRPFMARPGNILQN-RWPQTMPYIQPRNIGMPANQNIMMTGMPQNQQRRNIMV----DPMMNQNRNARPITGN-------------------VQLNQTRPQYNMVANGRQGNNIMYQYPIQDNQPMLNPDQ--------------MKMPDIESQIDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHKGGE 1879
+ P P ASLYVGDLH DVTEA+L+EKF T G VLSIRVCRDL+TR+SLGYAYVN+Q +A+ A+D +NF+ + GRP RIMWSQRDP+ R+SGVGN+FIKNLD SI K + DTF+ FG I SCKV TDE SKG+ FV+F E A AI +NG ++ + V+V KFIPR +R + F N YIKNFG L D+ LR+LFE+ G+I SAKVM D+ G +KGFGFVSF+E E+A KAV LNG+ + KT+YVGRA KK+ER EL+ R+E + ER+ +++ GVNLY+KNL + I+DERLR EFA FG ITSAKVM + N SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL SQ+ QR G + Q +FNPG + + + QR + + + RWP T P ++P G PA M P + V +P M NARPITG + RP AN Q Y+Y M NP Q + I+ Q L T S +A+A++ E KQ+LGE+++P++ ++ +MAGKITGM LE+DN+ELL+M+E++ SLK K++EA+ VL AH E
Sbjct: 4 SGPNYPIASLYVGDLHADVTEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPVDAERALDTMNFDTVKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVATDEESTSKGYGFVHFETEEAANNAIMKVNGMLLNGRKVFVGKFIPRKEREKLLGEKARRFMNVYIKNFGDDLDDEKLRELFEKYGKITSAKVMTDELGKAKGFGFVSFEEPENAEKAVEDLNGKELNGKTLYVGRAQKKSERAAELKRRFELMKMERMNRYQ-GVNLYVKNLDDAIDDERLRKEFAPFGTITSAKVMTDG-NGRSKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVALAQRKEERKAHLASQYMQRMAGMRMQLGQMFNPGSAGYFVPTMPQAQRSYFPQMAQMRATPRWP-TQPQMRPG--GQPAAAFQAMQSAPFARAATRPAVAASQNPGMRAGMNARPITGQQPTAAAAAASGTRVAAMGPTGVGAARPTSMASANVNQ-RPATYKY----TSNMRNPPQPQTVQQAVTQQAVAQQAVHIQGQEPL-TASMLADANAQEQKQMLGERLFPVIHRWYPEMAGKITGMLLEIDNSELLHMLEHQESLKAKVEEAVAVLQAHHAKE 639
BLAST of Polyadenylate-binding protein vs. TrEMBL
Match: A0A2J7QKS7 (Polyadenylate-binding protein OS=Cryptotermes secundus OX=105785 GN=Pabpc1_0 PE=3 SV=1) HSP 1 Score: 562.762 bits (1449), Expect = 0.000e+0 Identity = 316/637 (49.61%), Postives = 406/637 (63.74%), Query Frame = 2
Query: 83 ANPTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQR----STPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGR-VIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQR---------GHQPQPVFNPGMVNFMMNSNVQRP--FMARPGNILQ----NRW---PQTMPYIQPRNIGMPANQNIMMTGMPQNQQRRNIMVDP-MMNQNRNARPITG-------NVQLNQTRPQYNMVANGRQGNNIMYQYPIQDNQPMLNPDQ----MKMPDIESQIDL-----TTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHKG 1873
P P ASLYVGDLH DVTEA+L+EKF T G VLSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ I GRP RIMWSQRDP+ R+SGVGN+FIKNLD SI K + DTF+ FG I SCKV DE G SKG+ FV+F E A K+I+ +NG ++ K V+V KF+PR +R K FTN YIKNFG D+ LR++FE+ G I S KVM +G S+GFGFV+F+E EDA +AV+ LNG+ +IE K +YVGRA KKAERQ+EL+ ++E+ + ERL +++ GVNLY+KNL + I+DERLR EF +G ITSAKVML E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KEDR AHL SQ+ QR G Q +F PG + +P F P + Q RW PQ P Q G P Q T R P M +ARPITG N+Q P ++ A GRQ N Y+Y M NP Q + P ++ + + T S +A A E KQ+LGE+++PL+ + D+AGKITGM LE+DN+ELL+M+E+ SLK K++EA+ VL AH+
Sbjct: 4 GGPNYPMASLYVGDLHHDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAATKSIEKVNGMLLNGKKVFVGKFVPRKEREKELGEKAKLFTNVYIKNFGEDFSDELLREMFEKYGRITSHKVMSKDDGKSRGFGFVAFEEPEDAERAVDELNGKELIEGKPLYVGRAQKKAERQQELKRKFEQLKIERLNRYQ-GVNLYVKNLDDTIDDERLRKEFTPYGTITSAKVML--EEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLASQYMQRMANMRMQQMGTQ---MFQPGGAGGYFVPTLPQPQRFYG-PAQMAQIRATPRWPAQPQVRPNAQGGASGFPNMQGPFRTA------PRAPGAQPGSMRNALSARPITGQQPVGAANIQGRPMAPTVSVSAQGRQTN---YKYTAN----MRNPPQPIPVAQQPPVQQAVHIQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQRMYPDLAGKITGMLLEIDNSELLHMLEHHESLKAKVEEAVAVLQAHQA 620
BLAST of Polyadenylate-binding protein vs. TrEMBL
Match: A0A1W7R9X3 (Polyadenylate-binding protein OS=Hadrurus spadix OX=141984 PE=3 SV=1) HSP 1 Score: 561.607 bits (1446), Expect = 0.000e+0 Identity = 314/643 (48.83%), Postives = 404/643 (62.83%), Query Frame = 2
Query: 89 PTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQRSTPNKD----FTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQR--GHQPQP----VFNPGMVNFMMNSNVQRPFMARPGNILQ----NRWPQTMPYIQPRN--IGMPANQNIMMTGMPQNQQRRNIMVDPM---MNQNRNARPITGN--------------------------VQLNQTRPQYNMVANGRQGNNIMYQYPIQDNQPMLNPDQMKMPDIESQIDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHKGGEG 1882
P P ASLYVGDLHPD TEA+L+EKF + G VLSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ I GRP RIMWSQRDP+ R+SGVGN+FIKNLD SI K + DTF+ FG I SCKV TD+ G SKG+ FV+F E A AI +NG ++ + VYV KFIPR +R D F N YIKNF L D LR++FE+ G I SAKVM +G SKGFGFVSF++ E A KAV+ LNG+ + K +YVGRA KKAERQ EL+ R+E+ + ER+ +++ GVNLY+KNL + I+DERLR EF+ FG ITSAKVM + N+ S+GFGFVCFS+P+EAT+AV+EMNG+I+ KPLYVALAQ+KEDR AHL SQ+ QR G + QP +F P + + + Q P + Q RW P ++P N G PA Q T + R N+ M N NARPITG + Q P Y AN R + Q P+ Q I+ Q L TTS +A+A+ E KQ+LGE+++PL+ ++ DMAGKITGM LE+DN+ELL+M+E+ +LK K+DEA+ VL AH E
Sbjct: 6 PNCPIASLYVGDLHPDGTEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQHPQDAERALDTMNFDLIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVATDDEGNSKGYGFVHFETEEAANNAIAKVNGMLLNGRKVYVGKFIPRREREKMLGDKARRFMNVYIKNFADDLDDDKLREMFEKYGAITSAKVMASDDGKSKGFGFVSFEDPESAEKAVDELNGKELGGKQLYVGRAQKKAERQAELKRRFEQLKMERMSRYQ-GVNLYVKNLDDAIDDERLRKEFSPFGTITSAKVMTDAHNH-SRGFGFVCFSSPEEATKAVTEMNGRIMVSKPLYVALAQRKEDRRAHLASQYVQRMQGMRMQPHLGQIFQPSGTGYFVPTMPQTQRNYFPPQLQQMRATPRW-TAQPPLRPGNQPAGFPAIQPTQFT---RPTPRPNVAAAAQAAGMRANMNARPITGQQTAAAPGRRMAPLATVAPATRATLPAANVAQPCPAYKYTANMRNPPSATMQAPVV---------QQAAVHIQGQEPL-TTSMLADANPQEQKQMLGERLFPLIHRWYPDMAGKITGMLLEIDNSELLHMLEHHEALKAKVDEAVAVLQAHHAKEA 632
BLAST of Polyadenylate-binding protein vs. TrEMBL
Match: A0A067REV7 (Polyadenylate-binding protein OS=Zootermopsis nevadensis OX=136037 GN=L798_01722 PE=3 SV=1) HSP 1 Score: 559.296 bits (1440), Expect = 0.000e+0 Identity = 314/633 (49.61%), Postives = 404/633 (63.82%), Query Frame = 2
Query: 83 ANPTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQR----STPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGR-VIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQR---------GHQPQPVFNPGMVNFMMNSNVQRP---FMARPGNILQN--RW---PQTMPYIQPRNIGMPANQNIMMTGMPQNQQRRNIMVDP-MMNQNRNARPITGNVQLN----QTRPQYNMVANGRQGNNIMYQYPIQDNQPMLNPDQ----MKMPDIESQIDL-----TTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHKG 1873
P P ASLYVGDLH DVTEA+L+EKF T G VLSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ I GRP RIMWSQRDP+ R+SGVGN+FIKNLD SI K + DTF+ FG I SCKV DE G SKG+ FV+F E A K+I+ +NG ++ K V+V KF+PR +R K FTN YIKNFG D+ LR++FE+ G I S KVM +G S+GFGFV+F+E EDA +AV+ LNG+ +IE K +YVGRA KKAERQ+EL+ ++E+ + ERL +++ GVNLY+KNL + I+DERLR EF FG ITSAKVML E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KEDR AHL SQ+ QR G Q +F PG + +P + P ++ RW PQ P Q G P Q T R V P M +ARPITG + Q RP V+ QG Y+Y M NP Q + P ++ + + T S +A A E KQ+LGE+++PL+ + D+AGKITGM LE+DN+ELL+M+E+ SLK K++EA+ VL AH+
Sbjct: 4 GGPNYPMASLYVGDLHHDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAAIKSIEKVNGMLLNGKKVFVGKFVPRKEREKELGEKAKLFTNVYIKNFGEDFSDELLREMFEKYGRITSHKVMNKDDGKSRGFGFVAFEEPEDAERAVDELNGKELIEGKPLYVGRAQKKAERQQELKRKFEQLKIERLNRYQ-GVNLYVKNLDDTIDDERLRKEFTPFGTITSAKVML--EEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLASQYMQRMANMRMQQMGTQ---MFQPGGAGGYFVPTLPQPQRFYGPTPMTQIRATPRWPAQPQVRPNAQGGASGFPNMQGPFRTA------PRAPGVQPGSMRNALSARPITGQQPVGAANIQGRPMAPTVSVNAQGRPTNYKYTAN----MRNPPQPMPVAQQPPVQQAVHIQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQRMYPDLAGKITGMLLEIDNSELLHMLEHHESLKAKVEEAVAVLQAHQA 620
BLAST of Polyadenylate-binding protein vs. Ensembl Cavefish
Match: ENSAMXT00000035946.1 (polyadenylate-binding protein 1-like [Source:NCBI gene;Acc:103030422]) HSP 1 Score: 533.102 bits (1372), Expect = 0.000e+0 Identity = 300/634 (47.32%), Postives = 399/634 (62.93%), Query Frame = 2
Query: 89 PTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQRSTP----NKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRGHQ----PQPVFNPGM----VNFMMNS--NVQRPFMARPGNILQN-----RWP---------QTMP-YIQPRNIGMPANQNIMMTGMPQNQQRRNIMVDPMMNQNRNARPITGNVQLN----QTRPQYNM---VANGRQGNNIMYQYPIQDNQPMLNPDQMKMPDIESQIDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHKGGEG 1882
P+ P ASLYVGDLH DVTEA+LYEKF G +LSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ I GRP RIMWSQRDP+ R+SGVGNIFIKNLD SI K + DTF+ FG I SCKV DENG SKG+ FV+F AE+AI+ +NG ++ ++ V+V +F R +R K+FTN YIKNFG + D+ L+D+F + G +S +VM D+ G SKGFGFVSF+ HEDA +AV+ +NG+ + K +YVGRA KK ERQ EL+ ++E+ +Q+R+ +++ GVNLY+KNL + ++DERLR EF+ FG ITSAKVM+ E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR P PV NP + M + Q P + L RW Q MP I+P P Q +Q R + M +Q RP + PQY V N +Q Q P+Q QP ++ ++ Q L T S +A A E KQ+LGE+++PL+ +AGKITGM LE+DN+ELL+M+E+ SL+ K+DEA+ VL AH+ E
Sbjct: 6 PSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKDVFGKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQRAVDEMNGKELNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQ-GVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRAAYYPSSQLAQLRPSPRWATQSVRPQHFQNMPNAIRP---AAPRPQTFSTIRPTASQLPRMMTSQRMASQPMGPRPTGAGAATGTAPVRAVPQYKYGPGVRNPQQHLGAQPQVPMQ--QPAVH--------VQGQEPL-TASMLAAAPPQEQKQMLGERLFPLIQNMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 621
BLAST of Polyadenylate-binding protein vs. Ensembl Cavefish
Match: pabpc1b (poly(A) binding protein cytoplasmic 1 [Source:NCBI gene;Acc:103023186]) HSP 1 Score: 532.717 bits (1371), Expect = 0.000e+0 Identity = 297/631 (47.07%), Postives = 397/631 (62.92%), Query Frame = 2
Query: 89 PTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQRSTP----NKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRGHQ----PQPVFNPGM----VNFMMNS--NVQRPFMARPGNILQN-----RWP---------QTMPYIQPRNIGMPANQNIMMTGMPQNQQRRNIMVDPMMNQNRNARPITGNVQLN----QTRPQYNMVANGRQGNNIMYQYPIQDNQPMLNPDQMKMPDIESQ-IDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHKGGEG 1882
P+ P ASLYVGDLH DVTEA+LYEKF G +LSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ I GRP RIMWSQRDP+ R+SGVGNIFIKNLD SI K + DTF+ FG I SCKV DENG SKG+ FV+F + AE+AI+ +NG ++ ++ V+V +F R +R K+FTN YIKNFG + D+ L+++F + G +S +VM D G S+GFGFVSF+ HEDA KAV+ +NG+ + K IYVGRA KK ERQ EL+ ++E+ +Q+R+ +++ GVNLY+KNL + I+DERLR EF+ FG ITSAKVM++ SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR P PV NP + M + Q P + L RW Q MP + P M P +Q R + + Q RP T ++ PQY A R M + QP ++ M+ P + Q + T S +A A E KQ+LGE+++PL+ +AGKITGM LE+DN+ELL+M+E+ SL+ K+DEA+ VL AH+ E
Sbjct: 6 PSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDEKLKEVFSKYGNSMSIRVMTDDSGKSRGFGFVSFERHEDAQKAVDEMNGKELNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQ-GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMD--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRAAYYPTSQLAQLRPSPRWATQGVRPQHFQNMPATMRPSAPRPQTFGAM---RPPSQVPRMMSAQRVAAQTMGPRPATAAAAAAAAPVRSVPQYKYAAGVRNPQQHM------NTQPQVS---MQQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 620
BLAST of Polyadenylate-binding protein vs. Ensembl Cavefish
Match: ENSAMXT00000018970.2 (polyadenylate-binding protein 1-like [Source:NCBI gene;Acc:103030422]) HSP 1 Score: 530.406 bits (1365), Expect = 0.000e+0 Identity = 286/603 (47.43%), Postives = 393/603 (65.17%), Query Frame = 2
Query: 89 PTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQRSTP----NKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRGHQPQPVFNPGMVNFMMNSNVQRPFMARPGNILQNRWPQTMPYIQPRNIGMPANQNIMMTGMPQNQQRRNIMVDPMMNQNRNARPITGNVQLNQTRPQYNM-VANGRQGNNIMYQYPIQDNQPMLNPDQMKMPDIESQIDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHKGGEG 1882
P+ P ASLYVGDLH DVTEA+LYEKF G +LSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ I GRP RIMWSQRDP+ R+SGVGNIFIKNLD SI K + DTF+ FG I SCKV DENG SKG+ FV+F AE+AI+ +NG ++ ++ V+V +F R +R K+FTN YIKNFG + D+ L+D+F + G +S +VM D+ G SKGFGFVSF+ HEDA +AV+ +NG+ + K +YVGRA KK ERQ EL+ ++E+ +Q+R+ +++ GVNLY+KNL + ++DERLR EF+ FG ITSAKVM+ E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR + V NP V P+ P + + +P Q R P++Q + P+ + V P R R T ++ T Y A+ +++ ++ P ++ ++ Q L T S +A A E KQ+LGE+++PL+ +AGKITGM LE+DN+ELL+M+E+ SL+ K+DEA+ VL AH+ E
Sbjct: 6 PSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKDVFGKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQRAVDEMNGKELNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQ-GVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNP----------VLNPYQPAPPS---GYFMAAIPQAQNRAAYYPSSQLAQLRPSPRWATQS---VRP----QRKTRAHTHHIHAQHTHTIYTADTAHTLLRRSLLGSMKAVNSLPAVH--------VQGQEPL-TASMLAAAPPQEQKQMLGERLFPLIQNMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 575
BLAST of Polyadenylate-binding protein vs. Ensembl Cavefish
Match: pabpc1l (embryonic polyadenylate-binding protein B-like [Source:NCBI gene;Acc:103022532]) HSP 1 Score: 521.161 bits (1341), Expect = 7.940e-177 Identity = 286/628 (45.54%), Postives = 402/628 (64.01%), Query Frame = 2
Query: 83 ANPTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQR----STPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRGHQPQPVFNPGMVNFMMNSNVQRPFMARP-GNILQNRWPQTMPYIQ-----PRNIGMPANQNIMMTGMPQNQQRRNIMVDPMMNQNRNARPITGNVQLNQTRPQYNMVANGRQ-GNNIM-----YQYP--IQDNQ------PMLNPDQMKMPDIESQIDL-----TTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHKGGE 1879
+ P P ASLYVGDLHPDVTEA+LY+KF G ++SIRVCRD++TR+SLGYAY+N+Q +A+ A+D +N+E I GRP RIMWSQRDP R+SGVGNIFIKN+D SI K + DTF+ FG I SCKV D+NG SKG+ FV+F A +AI+ +NG ++ ++ V+V F R +R +FTN YIKNFG ++ LR++F + G+ +S +VM D++G S+GFGFV+F+ HEDA KAV +NG+ + K +YVGRA K+ ERQ EL+ ++E+ +QERL +++ GVNLY+KNL + I+D++LR EFA +G ITSAKVM E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R A L +Q+ QR + + +P M F ++ P + + G N P P + PR G P + ++ + MP +R + + M + A I ++ Q A GR G +M Y+Y +++ Q P + + P +E + + T S +A A +E KQLLGE++YPL+ ++AGKITGM LE+DN+ELL+M+E+ SL K+DEA+ VL AH+ E
Sbjct: 4 SGPAYPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQQPADAECALDTMNYEVIKGRPIRIMWSQRDPCLRKSGVGNIFIKNMDESIDNKALYDTFSVFGNILSCKVVCDDNG-SKGYGFVHFETHEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEFGAKAMEFTNVYIKNFGEDFDNEKLRNIFSEYGKTLSVRVMTDEKGRSRGFGFVNFENHEDAQKAVAEMNGKELNGKILYVGRAQKRLERQGELKRKFEQIKQERLNRYQ-GVNLYVKNLDDGIDDDKLRKEFAPYGTITSAKVM--TEGGLSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRLASVRAISSPAMPAFQQSAGYYMPSIPQAQGRAFYNAVPNLRPAPRFAAQAPRPQG-PYSAQMVRSAMP---RRASTPISTMRQASTQAPGIINTQRMAHIGTQ---TAGGRTVGGAVMRGVNQYKYSSGVRNMQQVISVPPPIAQQVVPPPVMEPAVHVKGQEPLTPSMLAAAPLLEQKQLLGERLYPLIQALHPNLAGKITGMLLEIDNSELLHMLESPESLDAKVDEAVAVLQAHQAKE 620
BLAST of Polyadenylate-binding protein vs. Ensembl Cavefish
Match: pabpc1l (embryonic polyadenylate-binding protein B-like [Source:NCBI gene;Acc:103022532]) HSP 1 Score: 506.523 bits (1303), Expect = 1.125e-170 Identity = 286/655 (43.66%), Postives = 402/655 (61.37%), Query Frame = 2
Query: 83 ANPTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIV---------------------------YVAKFIPRTQR----STPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRGHQPQPVFNPGMVNFMMNSNVQRPFMARP-GNILQNRWPQTMPYIQ-----PRNIGMPANQNIMMTGMPQNQQRRNIMVDPMMNQNRNARPITGNVQLNQTRPQYNMVANGRQ-GNNIM-----YQYP--IQDNQ------PMLNPDQMKMPDIESQIDLT-----TTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHKGGE 1879
+ P P ASLYVGDLHPDVTEA+LY+KF G ++SIRVCRD++TR+SLGYAY+N+Q +A+ A+D +N+E I GRP RIMWSQRDP R+SGVGNIFIKN+D SI K + DTF+ FG I SCKV D+NG SKG+ FV+F A +AI+ +NG ++ ++ V +V F R +R +FTN YIKNFG ++ LR++F + G+ +S +VM D++G S+GFGFV+F+ HEDA KAV +NG+ + K +YVGRA K+ ERQ EL+ ++E+ +QERL +++ GVNLY+KNL + I+D++LR EFA +G ITSAKVM E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R A L +Q+ QR + + +P M F ++ P + + G N P P + PR G P + ++ + MP +R + + M + A I ++ Q A GR G +M Y+Y +++ Q P + + P +E + + T S +A A +E KQLLGE++YPL+ ++AGKITGM LE+DN+ELL+M+E+ SL K+DEA+ VL AH+ E
Sbjct: 4 SGPAYPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQQPADAECALDTMNYEVIKGRPIRIMWSQRDPCLRKSGVGNIFIKNMDESIDNKALYDTFSVFGNILSCKVVCDDNG-SKGYGFVHFETHEAANRAIETMNGMLLNDRKVKEAGKDLESCPGQVCQLGSKIQLSMLSFVGHFKSRKEREAEFGAKAMEFTNVYIKNFGEDFDNEKLRNIFSEYGKTLSVRVMTDEKGRSRGFGFVNFENHEDAQKAVAEMNGKELNGKILYVGRAQKRLERQGELKRKFEQIKQERLNRYQ-GVNLYVKNLDDGIDDDKLRKEFAPYGTITSAKVM--TEGGLSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRLASVRAISSPAMPAFQQSAGYYMPSIPQAQGRAFYNAVPNLRPAPRFAAQAPRPQG-PYSAQMVRSAMP---RRASTPISTMRQASTQAPGIINTQRMAHIGTQ---TAGGRTVGGAVMRGVNQYKYSSGVRNMQQVISVPPPIAQQVVPPPVMEPAVHVKGQEPLTPSMLAAAPLLEQKQLLGERLYPLIQALHPNLAGKITGMLLEIDNSELLHMLESPESLDAKVDEAVAVLQAHQAKE 647
BLAST of Polyadenylate-binding protein vs. Ensembl Sea Lamprey
Match: pabpc4 (poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:ZFIN;Acc:ZDB-GENE-030131-9663]) HSP 1 Score: 457.603 bits (1176), Expect = 1.920e-153 Identity = 267/581 (45.96%), Postives = 358/581 (61.62%), Query Frame = 2
Query: 83 ANPTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIV---YVAKFIPRTQR----STPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRGH------------QPQPVFNPGMVNFMMNSNVQRPFMARPGNILQNRWPQTMPYIQPRNIGMPANQNIMMTGMPQNQQRRNIMVDPMMNQNRNARPITGNVQLNQTRPQYNMVAN----------GRQGNNI-MYQYPIQDNQPMLNPDQMKMPDIESQI---------DLTTTSKIANADSMEAKQLLGE 1708
+ P+ P ASLYVGDLHPDVTEA+LYEKF G VLSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ I G+P RIMWSQRDP+ R+SGVGN+FIKNLD SI K + DTF+ FG I SCKV DENG S+G+ FV+F + A++AI+ +NG ++ +++ +V +F R +R K+FTN YIKNFG + + LR+ F + G+ +S VM D+ G S+GFGFVSF++HEDA +AVN +NG+ + +T++VGRA KK ERQ EL+ ++E +QER+ +++ GVNLY+KNL + I+DE+LR EFA +G ITS KVM E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL SQ+ QR Q QP G M R P + Q R Q P Q R G M +Q++ P + R PIT N Q+ ++ P + VA G N+ Y+Y QPM NP M + +Q+ + T S +A+A E KQ+LGE
Sbjct: 4 SGPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVVCDENG-SRGYGFVHFETQEAADRAIEKMNGMLLNDRLARRRFVGRFKSRKEREQEMGARAKEFTNVYIKNFGDDMDEDKLREFFGKFGKALSVCVMSDECGKSRGFGFVSFEQHEDAQRAVNEMNGKELNGRTVFVGRAQKKGERQAELKRKFEMLKQERISRYQ-GVNLYVKNLDDNIDDEQLRKEFAPYGTITSTKVM--SEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTSQYMQRIAGMRALPPSTVIGQYQPAAPSGYFMPAMPQAQTRTAYYAPNQMTQIRPQQRWPTQQVRPQGGYQGMQGGMMRQSGTRQQQQQQQQPPI---RTMSPIT-NTQIVRSIPGGHRVAATQTLGPRAMPGMGPRNVGAYKY----GQPMRNPIHGHMQQLRAQMHQAVHVHGQEPLTPSMLASAPLQEQKQMLGE 572
BLAST of Polyadenylate-binding protein vs. Ensembl Sea Lamprey
Match: pabpc4 (poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:ZFIN;Acc:ZDB-GENE-030131-9663]) HSP 1 Score: 332.413 bits (851), Expect = 3.208e-106 Identity = 208/498 (41.77%), Postives = 280/498 (56.22%), Query Frame = 2
Query: 497 AFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQR----STPNKDFTNCYIKNFGIHLHDKSLRDLFEQ-CGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRGH------------QPQPVFNPGMVNFMMNSNVQ-RPFMARPGNILQ----NRWPQTMPYIQPRNIGMPANQNIMMTGMPQNQQRRNIMVD-----PMMNQNRNARPITGNVQLNQTR--PQYNMVAN-------GRQGNNIMYQYP-----IQDNQPMLNPDQMKMPDIESQIDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAH 1867
FV+F + A+KAI+ +NG ++ ++ V+V +F R +R ++FTN YIKNFG + D+ LR+ FEQ G+ +S KVM+D+ G SKGFGFVSF+ HEDA KAV+ +N + + + IYVGRA KKAERQ EL+ ++E +QER+ +++ GVNLY+KNL + INDERL EF+ FG ITSAKVM+ E S+GFGFVCFS+P+EAT+AV+EMNG+I+ KPLYVALAQ+KE+R HL SQF QR Q QP G M Q R P + RWP + G A M P+ Q R + P +Q RP T Q R P Y + G QG M Q P IQ +P+ T S +A A E KQ+LGE+++PL+ +AGKITGM LE+DN+ELL+M+E+ SL+ K++EA+ VL AH
Sbjct: 1 GFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEFGAKAREFTNVYIKNFGDDMDDERLREYFEQYVGKTLSVKVMMDEGGKSKGFGFVSFERHEDAQKAVDEMNTKELNGRAIYVGRAQKKAERQTELKRKFEMLKQERMSKYQ-GVNLYVKNLDDNINDERLWKEFSPFGTITSAKVMM--EEGRSRGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEERKMHLTSQFMQRLAGMRAVPPSAIIGQYQPAAASGYFMAAMPQQAQGRTAYYTPSPMAPMRPNPRWPLQVRPQGAHAAGFQAITGPMRQPAPRPTQMRTVNPASVPQVPRASQGMMPRP-TFPTQAAGPRALPGYKYTGSVRNPQQPGVQGPGAMQQAPQSAVHIQGQEPL------------------TASMLAAAPPHEQKQMLGERLFPLIHGMYPTLAGKITGMLLEIDNSELLHMLESPESLRAKVEEAVAVLQAH 476 HSP 2 Score: 122.865 bits (307), Expect = 6.662e-30 Identity = 70/193 (36.27%), Postives = 105/193 (54.40%), Query Frame = 2
Query: 371 NIFIKNLDPSITVKEINDTFANF-GEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQRSTPNK--------------DFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRY 904
N++IKN + + + + F + G+ S KV DE G SKGF FV+F DA+KA+ +N K + + +YV + + +R T K N Y+KN +++D+ L F G I SAKVM++ EG S+GFGFV F E+A KAV +NGR+I K +YV A +K ER+ L +++
Sbjct: 52 NVYIKNFGDDMDDERLREYFEQYVGKTLSVKVMMDEGGKSKGFGFVSFERHEDAQKAVDEMNTKELNGRAIYVGRAQKKAERQTELKRKFEMLKQERMSKYQGVNLYVKNLDDNINDERLWKEFSPFGTITSAKVMME-EGRSRGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEERKMHLTSQF 243
BLAST of Polyadenylate-binding protein vs. Ensembl Sea Lamprey
Match: ncl (nucleolin [Source:ZFIN;Acc:ZDB-GENE-030131-6986]) HSP 1 Score: 108.227 bits (269), Expect = 1.343e-24 Identity = 76/291 (26.12%), Postives = 143/291 (49.14%), Query Frame = 2
Query: 320 RIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQRSTPNKDFTNCY-IKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKE-GNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKK 1186
R+++++RD +F+KN+ S TV+ + + F E+ ++ NG S+G A+V F E DAE A++ G + + V + ++ ++ P +N ++N + SLR +FE + +V++D+E G +G FV F +DA A+ +G +E GRA +R + R S L+++ LG + +++ L + F T+A+++ ++++ SKG+ +V FS+ DEA A++ M G ++G +YV A+ K
Sbjct: 363 RVLFTERD-------AKTLFVKNIAWSSTVESLTEAFEGAVEV---RIPLGPNGKSRGIAYVEFPSEEDAEAAMKEYQGADVDGRAVLLDYVGDKSNKAKPQGPESNTLMVRNLSFQADEDSLRSVFENAEAV---RVLMDRETGKPRGMAFVDFASIDDAKAAMKAHSGAEVE------GRA---------IRLEFSTPRGTPGPSEASS-TLFVRGLGEDTSEDTLMDSFE---GATAARIVTDRDSGQSKGYAYVDFSSADEAKSALNAMKGVEIDGSQIYVDFARPK 621
BLAST of Polyadenylate-binding protein vs. Ensembl Sea Lamprey
Match: sf3b4 (splicing factor 3b, subunit 4 [Source:ZFIN;Acc:ZDB-GENE-020419-22]) HSP 1 Score: 93.5893 bits (231), Expect = 1.748e-20 Identity = 56/165 (33.94%), Postives = 96/165 (58.18%), Query Frame = 2
Query: 104 ASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVG-NIFIKNLDPSITVKEINDTFANFGEI--SSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVA 589
A++YVG L V+EA+L+E F G V++ + +D +T++ GY +V + +A A+ +N ++G+P R+ ++ + VG NIFI NLD I K + DTF+ FG I + ++ E G SKG+AF+NF ++ AI+A+NG+ + + + V+
Sbjct: 13 ATVYVGGLDDKVSEALLWELFLQAGPVVNTHMPKDRITQQHQGYGFVEFLGEEDADYAIKIMNMIKLYGKPIRV--NKASAHNKNLDVGANIFIGNLDTEIDEKLLYDTFSAFGVILQTPKTMRDPETGNSKGYAFINFASFEASDAAIEAMNGQYLCNRPISVS 175 HSP 2 Score: 78.9518 bits (193), Expect = 8.496e-16 Identity = 55/193 (28.50%), Postives = 95/193 (49.22%), Query Frame = 2
Query: 623 NKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDK-EGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNIT-SAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDR 1195
N+D T Y+ + + L +LF Q G +V+ + D+ +G+GFV F EDA A+ +N + K I V +A + + L G N++I NL EI+++ L + F+ FG I + K M + E SKG+ F+ F++ + + A+ MNG+ + +P+ V+ A KK+ +
Sbjct: 10 NQDAT-VYVGGLDDKVSEALLWELFLQAGPVVNTHMPKDRITQQHQGYGFVEFLGEEDADYAIKIMNMIKLYGKPIRVNKA---SAHNKNLDV---------------GANIFIGNLDTEIDEKLLYDTFSAFGVILQTPKTMRDPETGNSKGYAFINFASFEASDAAIEAMNGQYLCNRPISVSYAFKKDSK 183 HSP 3 Score: 47.7506 bits (112), Expect = 6.191e-6 Identity = 24/89 (26.97%), Postives = 51/89 (57.30%), Query Frame = 2
Query: 104 ASLYVGDLHPDVTEAILYEKFQTHGNVL-SIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWS-QRDPAARRSG 364
A++++G+L ++ E +LY+ F G +L + + RD T S GYA++N+ + +A++ +N + + RP + ++ ++D R G
Sbjct: 100 ANIFIGNLDTEIDEKLLYDTFSAFGVILQTPKTMRDPETGNSKGYAFINFASFEASDAAIEAMNGQYLCNRPISVSYAFKKDSKGERHG 188
BLAST of Polyadenylate-binding protein vs. Ensembl Sea Lamprey
Match: tia1l (cytotoxic granule-associated RNA binding protein 1, like [Source:ZFIN;Acc:ZDB-GENE-030131-2167]) HSP 1 Score: 81.2629 bits (199), Expect = 2.575e-17 Identity = 55/178 (30.90%), Postives = 85/178 (47.75%), Query Frame = 2
Query: 371 NIFIKNLDPSITVKEINDTFANFGEISSCKVQTD-ENGVSKGFAFVNFNHEGDAEKAI-----QAINGKMIREKIVYVAKFIPRTQRSTPNKDF-----------TNCYIKNFGI--HLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTI 847
++F+ +L P I+ ++ FA FG+IS +V D G SKG+ FV+F + DAE AI Q + G+ IR P+ + T K TNC + GI L ++ +R F G+I+ +V D KG+ F+ F HE A A+ ++NG IE ++
Sbjct: 4 HVFVGDLSPEISTDDLRAAFAPFGKISDARVVKDLATGKSKGYGFVSFFQKLDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKGSQDTDPKHLSFEEVLNQSSPTNCTVYCGGITQGLTEQLMRQTFLLFGQILEIRVFPD-----KGYSFIRFATHESAAHAIVSVNGSTIEGFSV 176 HSP 2 Score: 80.4925 bits (197), Expect = 4.534e-17 Identity = 54/210 (25.71%), Postives = 96/210 (45.71%), Query Frame = 2
Query: 629 DFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVD-KEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKK--AERQRELRTRYEKTRQERLQQHK-SGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRGHQPQP 1246
D + ++ + + LR F G+I A+V+ D G SKG+GFVSF + DA A+ + G+ + + I A +K A + + + +E L Q + +Y + + ++ +R F +FG I +V +K G+ F+ F+ + A A+ +NG +EG + ++ D V + QF Q G+ QP
Sbjct: 1 DHYHVFVGDLSPEISTDDLRAAFAPFGKISDARVVKDLATGKSKGYGFVSFFQKLDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKGSQDTDPKHLSFEEVLNQSSPTNCTVYCGGITQGLTEQLMRQTFLLFGQILEIRVFPDK------GYSFIRFATHESAAHAIVSVNGSTIEGFSVKCFWGKEASDPVNQFQQQFSQVGYTQQP 204 HSP 3 Score: 71.2478 bits (173), Expect = 5.700e-14 Identity = 45/172 (26.16%), Postives = 77/172 (44.77%), Query Frame = 2
Query: 110 LYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVG--------------------NIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMI 565
++VGDL P+++ L F G + RV +DL T KS GY +V++ +A++A+ + + + GR R W+ R P A + ++ + +T + + TF FG+I +V D KG++F+ F A AI ++NG I
Sbjct: 5 VFVGDLSPEISTDDLRAAFAPFGKISDARVVKDLATGKSKGYGFVSFFQKLDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKGSQDTDPKHLSFEEVLNQSSPTNCTVYCGGITQGLTEQLMRQTFLLFGQILEIRVFPD-----KGYSFIRFATHESAAHAIVSVNGSTI 171
BLAST of Polyadenylate-binding protein vs. Ensembl Yeast
Match: PAB1 (Poly(A) binding protein; part of the 3'-end RNA-processing complex, mediates interactions between the 5' cap structure and the 3' mRNA poly(A) tail, involved in control of poly(A) tail length, interacts with translation factor eIF-4G; stimulates, but is not required for the deadenylation activity of the Pan2p-Pan3p poly(A)-ribonuclease complex [Source:SGD;Acc:S000000967]) HSP 1 Score: 404.445 bits (1038), Expect = 5.203e-133 Identity = 246/601 (40.93%), Postives = 333/601 (55.41%), Query Frame = 2
Query: 101 CASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQRSTPNKD----FTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRGHQPQPVFNPGMVNFMMNSNVQRPFMARPGNILQNRWPQTMPYIQPRNIGMPAN-----QNIMMTGMPQNQQRRNIMVDPMMNQNRNARPITGNVQLNQTRPQYNMVANGRQGNNIMYQYPIQDNQPMLNPDQMKMPDIESQIDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAG--DMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHK 1870
ASLYVGDL P V+EA LY+ F G+V SIRVCRD +T+ SLGYAYVN+ + A++ LN+ I GR CRIMWSQRDP+ R+ G GNIFIKNL P I K + DTF+ FG+I S K+ TDENG SKGF FV+F EG A++AI A+NG ++ + +YVA + R +R + ++ +TN Y+KN D+ ++LF + G IVSA + D +G KGFGFV++++HEDA+KAV LN + + +YVGRA KK ER L+ +YE R E++ +++ GVNL++KNL + ++DE+L EFA +G ITSAKVM EN SKGFGFVCFS P+EAT+A++E N +IV GKPLYVA+AQ+K+ R + L Q Q R M + PG + + MP PR G+P N Q M GMP+N M Q RN P+ G PQ N NN YQ + +Q LGE++Y VS + AGKITGM L+L E+ ++E++ + EA + K
Sbjct: 37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQ-GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVM-RTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQ---------MRYQQATAAAAAAAAGMPGQFMPPMFYGVMP---PR--GVPFNGPNPQQMNPMGGMPKNG---------MPPQFRNG-PVYG------VPPQGGFPRNAND-NNQFYQ-------------------------------------QKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAAYESFK 567
BLAST of Polyadenylate-binding protein vs. Ensembl Yeast
Match: PES4 (Poly(A) binding protein, suppressor of DNA polymerase epsilon mutation; PES4 has a paralog, MIP6, that arose from the whole genome duplication [Source:SGD;Acc:S000001919]) HSP 1 Score: 118.627 bits (296), Expect = 3.157e-28 Identity = 107/389 (27.51%), Postives = 172/389 (44.22%), Query Frame = 2
Query: 110 LYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNL---DPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQRSTPN-----------------------------KDFTNCY--------IKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLN-KENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEG 1153
L++GDLH VTE L F+ + + +S +VC D VT+KSLG+ Y+N++ EA+ AM+ LN+ ++G+ RIM S R+ R++ N+F NL +P +T + DTF+ +G+I SCK+ + K FV F E A I+ N K + + RS PN K+ N Y IKN + + F + G I S + + + FV++K D+ KA+ N K + V RA K ER + + ++ T L+++NL N E L+ NI K+ ++ + N+S GF+ F ++ATR + +N ++V G
Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEELNYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCKLDS-----RKDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFETQKSRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFFSEVGPIKSI-YLSNATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEERAKFIESQKIST-------------LFLENLSAVCNKEFLK-YLCHQENIRPFKIQIDGYDENSSTYSGFIKFRNFEDATRIFNFLNNRLVGG 461
BLAST of Polyadenylate-binding protein vs. Ensembl Yeast
Match: MIP6 (Putative RNA-binding protein; interacts with Mex67p, which is a component of the nuclear pore involved in nuclear mRNA export; MIP6 has a paralog, PES4, that arose from the whole genome duplication [Source:SGD;Acc:S000001057]) HSP 1 Score: 101.679 bits (252), Expect = 9.580e-23 Identity = 101/397 (25.44%), Postives = 178/397 (44.84%), Query Frame = 2
Query: 107 SLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNL---DPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAING----------------------------KMIREKIVYVAKFIPRTQRSTPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGF-GFV-CFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRV 1198
SL++G+L VTE +L + F+ + + S +VCRD +T+KSLGY Y+N++ +A+SA N+ G+ +IM S ++ R++ N+F NL +P +T + +G + SC ++ +N FV F+++ A I+ N KMI IV + + S + T +KN + + D F G I S + +K+ N+ FV++K E++ KA LN + ++ TI+VG K ++ T +KT+ +Y+KNL N E + ++ + I +++ + N+ + F G V CFS D A R + ++ +++ G L A K D +
Sbjct: 112 SLFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKKSLGYGYLNFKDKNDAESARKEFNYTVFFGQEVKIMPSMKNTLFRKNIGTNVFFSNLPLENPQLTTRSFYLIMIEYGNVLSCLLERRKN-----IGFVYFDNDISARNVIKKYNNQEFFGNKIICGLHFDKEVRTRPEFTKRKKMIGSDIVIEDELLASNNLSDNARSKT-ILVKNLPSDTTQEEVLDYFSTIGPIKSV-FISEKQANTPHKAFVTYKNEEESKKAQKCLNKTIFKNHTIWVGPGKDKP-VHNQIGTN-KKTK------------VYLKNLSFNCNKEFI-SQLCLQEKIRFSEIKITNYNSLNWTFCGHVECFSRSD-AERLFNILDRRLI-GSSLVEASWSKNNDNI 484
BLAST of Polyadenylate-binding protein vs. Ensembl Yeast
Match: PUB1 (Poly (A)+ RNA-binding protein; abundant mRNP-component protein that binds mRNA and is required for stability of many mRNAs; component of glucose deprivation induced stress granules, involved in P-body-dependent granule assembly; implicated in regulation of translation; carries Q/N-rich domain at C- terminus, identified as candidate prion; human homolog Tia1 is critical for normal synaptic plasticity; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000004961]) HSP 1 Score: 96.6709 bits (239), Expect = 1.177e-21 Identity = 51/182 (28.02%), Postives = 92/182 (50.55%), Query Frame = 2
Query: 644 YIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKE 1189
Y+ N + + L+ F+ G I + K+M+DK + + FV + + DA A+ TLNG+ IE+ + + A + + + NL++ +L ++DE LRN F F + S VM + + +S+G+GFV F++ D+A A+ M G+ + G+PL + A K++
Sbjct: 78 YVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSD-----------------DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRD 242 HSP 2 Score: 92.4337 bits (228), Expect = 3.410e-20 Identity = 50/167 (29.94%), Postives = 98/167 (58.68%), Query Frame = 2
Query: 374 IFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQRSTPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVD-KEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKK 871
+++ NLD +IT + F G I++ K+ D+N + +AFV ++ DA A+Q +NGK I IV + + ++Q+S+ + F N ++ + +++ D++LR+ F+ +S VM D + G+S+G+GFVSF +DA A++++ G+ + + + + A K+
Sbjct: 77 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKI-NWAFQSQQSSSDDTF-NLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKR 241 HSP 3 Score: 78.5666 bits (192), Expect = 8.650e-16 Identity = 51/167 (30.54%), Postives = 89/167 (53.29%), Query Frame = 2
Query: 110 LYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTD-ENGVSKGFAFVNFNHEGDAEKAI-----QAINGKMIREKIVYVAK 592
LYVG+L +TE IL + FQ G + +I++ D K++ YA+V Y S +A A+ LN + I +I W+ + + N+F+ +L+ ++ + + + F +F S V D + G S+G+ FV+F + DA+ A+ Q +NG+ +R I + AK
Sbjct: 77 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLR--INWAAK 240
BLAST of Polyadenylate-binding protein vs. Ensembl Yeast
Match: GBP2 (Poly(A+) RNA-binding protein; key surveillance factor for the selective export of spliced mRNAs from the nucleus to the cytoplasm; preference for intron-containing genes; similar to Npl3p; also binds single-stranded telomeric repeat sequence in vitro; relocalizes to the cytosol in response to hypoxia; GBP2 has a paralog, HRB1, that arose from the whole genome duplication [Source:SGD;Acc:S000000517]) HSP 1 Score: 80.4925 bits (197), Expect = 1.825e-16 Identity = 75/315 (23.81%), Postives = 137/315 (43.49%), Query Frame = 2
Query: 347 AARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYV----------AKFIPRTQRSTPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYV--GRAMKKA--ERQRELRTRYEKTR--------------QERLQQHKSGVN--------LYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQK 1183
A +R+ +IF++NL T +++ + F GE+ + T + G +G V F + AI +G + ++ + V +F + R + F +I N ++ +SL+D+F++CG ++ A V +D G S+GFG V + ++ I+A++T NG +E + + V GR K+ +R + R E TR E + GVN +Y NL L + F G I +A+ + +EN G V + +A + ++N G L ++ A++
Sbjct: 115 ATKRNFENSIFVRNLTFDCTPEDLKELFGTVGEVVEADIITSK-GHHRGMGTVEFTKNESVQDAISKFDGALFMDRKLMVRQDNPPPEAAKEFSKKATREEIDNGFE-VFIINLPYSMNWQSLKDMFKECGHVLRADVELDFNGFSRGFGSVIYPTEDEMIRAIDTFNGMEVEGRVLEVREGRFNKRKNNDRYNQRREDLEDTRGTEPGLAQDAAVHIDETAAKFTEGVNPGGDRNCFIYCSNLPFSTARSDLFDLFGPIGKINNAE-LKPQENGQPTGVAVVEYENLVDADFCIQKLNNYNYGGCSLQISYARR 426 HSP 2 Score: 78.5666 bits (192), Expect = 7.813e-16 Identity = 62/217 (28.57%), Postives = 104/217 (47.93%), Query Frame = 2
Query: 608 QRSTPNKDFTNC-YIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALA----QKKEDRVAHLRSQFQQ-RGHQP 1240
Q ++F N +++N + L++LF GE+V A ++ K G+ +G G V F ++E A++ +G + D+ + V + E +E + TR+E +G ++I NL +N + L++ F G++ A V L+ N S+GFG V + DE RA+ NG VEG+ L V +K DR R + RG +P
Sbjct: 112 QFDATKRNFENSIFVRNLTFDCTPEDLKELFGTVGEVVEADIITSK-GHHRGMGTVEFTKNESVQDAISKFDGALFMDRKLMVRQDNPPPEAAKEFSKK--ATREE----IDNGFEVFIINLPYSMNWQSLKDMFKECGHVLRADVELDF-NGFSRGFGSVIYPTEDEMIRAIDTFNGMEVEGRVLEVREGRFNKRKNNDRYNQRREDLEDTRGTEP 320
BLAST of Polyadenylate-binding protein vs. Ensembl Nematostella
Match: EDO33206 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SSV8]) HSP 1 Score: 518.464 bits (1334), Expect = 9.350e-177 Identity = 288/603 (47.76%), Postives = 386/603 (64.01%), Query Frame = 2
Query: 98 PCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQR----STPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRGHQPQPVFNPGMVNFMMNSNVQRPFMARPGNILQNRWPQTMPYIQPRNIGMPANQNIMMTGMPQNQQRRNIMVDPMMNQNRNARPITGNVQLNQTRPQYNMVANGRQGNNIMYQYPIQDNQPMLNPDQM-KMPD----IESQIDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHKGGE 1879
P ASLYVGDL PDVTEA+LYEKF T G+VLSIRVCRDLVTR+SLGYAYVN+Q A+ A+D +NF+ I GRPCRIMW QRDP+ R+SGVGNIFIKNLD SI K + DTF+ FG I SCK+ DE G KG+ FV+F E A +AI ++G ++ +K V+V +++ + +R T K FTN Y+KNFG + D+ ++++ + G+IVS KVM D EG SKGFGFVSF+ E+A +AVN LNG+ I + ++ GRA K+AER E++ EK RQER+ + + GVNLYIKNL + I+DERLR EF+ +G I+SAKVM + + N SKGFGFVCFS+P+EAT+AV+EMNG+I+ KPLYVALAQ++E+R A L +Q R ++ + QRPF PQ MP ++PR GMP QQ++ + + N A G P V R G + P + +Q + NP +MP+ I + S +A A E KQ+LGE+++PL+ DMAGKITGM LE+DNAELL+M+E+ ++L+MK+DEA+ VL AH+ E
Sbjct: 11 PIASLYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRRSLGYAYVNFQQPGHAEKALDTMNFDPIKGRPCRIMWQQRDPSLRKSGVGNIFIKNLDKSIDNKSLYDTFSAFGNILSCKIAQDELGNPKGYGFVHFETEDAALEAIARVDGMLLNDKKVFVGRWMSKKERIEKMGTQPKKFTNVYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRLWAGRAKKRAERAAEVKAEIEKKRQERINRFQ-GVNLYIKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGN-SKGFGFVCFSSPEEATKAVTEMNGRILISKPLYVALAQRREERKAQLAAQHMHR------------ISGLRMHQGQRPFFT----------PQ-MPQVRPR------------WGMPPQQQQQQMRPTGVQNMGGQAGMPQGGPAGMPRMP----VQQARMGGVPPQRQPYKFSQTVRNPPPAGQMPEGGQGIPGGQEPLNPSVLAAATPQEQKQMLGERLFPLIQTNHPDMAGKITGMLLEIDNAELLHMLESRDALQMKVDEAVSVLRAHQAKE 572
BLAST of Polyadenylate-binding protein vs. Ensembl Nematostella
Match: EDO29565 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T3A0]) HSP 1 Score: 97.8265 bits (242), Expect = 3.153e-24 Identity = 58/119 (48.74%), Postives = 74/119 (62.18%), Query Frame = 2
Query: 98 PCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISS 454
P ASLYVGDL PDVTEA+LYEKF T G+VLSIRVCRDLVTR+SLGYA + A+ A + I +++ R GV N++IKNLD I + + + F+ +G ISS
Sbjct: 11 PIASLYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRRSLGYALWAGRAKKRAERAAE---------VKAEIEKKRQERINRFQGV-NLYIKNLDDPIDDERLREEFSPYGTISS 119 HSP 2 Score: 70.8626 bits (172), Expect = 7.563e-15 Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 2
Query: 845 IYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITS 1033
++ GRA K+AER E++ EK RQER+ + + GVNLYIKNL + I+DERLR EF+ +G I+S
Sbjct: 58 LWAGRAKKRAERAAEVKAEIEKKRQERINRFQ-GVNLYIKNLDDPIDDERLREEFSPYGTISS 119
BLAST of Polyadenylate-binding protein vs. Ensembl Nematostella
Match: EDO42673 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S105]) HSP 1 Score: 102.449 bits (254), Expect = 8.306e-24 Identity = 84/295 (28.47%), Postives = 131/295 (44.41%), Query Frame = 2
Query: 428 FANFGEISSCK-VQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQRSTPNKDFT---NCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKE-GNSKGFGFVSFKEHEDAIKAVNTLNG------------RVIEDKTIYV---------GRAMKKAERQRELRTRYEK---------TRQERL-------QQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKK 1186
F +++CK V+ +G S GF FV++N DA+KAI +NG I K++ VA S P D T N Y+ N L + R FE G IV+ +++ DK G KG GFV + + +A A+++L+G R +D + V G+ M R R++ Q+++ Q G LY+ N+G + N E + FA G + +M + + KGF FV + +EA A+ +NG + KPL V+L K+
Sbjct: 25 FEAVASLNNCKIVRHKPSGWSYGFGFVDYNTTEDAQKAIDKLNGFTIGNKVLKVA-------FSRPGGDNTKGANLYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYDKKAEAQAAISSLSGTFFPGSTMGLQIRYADDNSAKVRPPNNVPNFGQQMGGPGPIRPPANRFQARFNPMGGGPLPQQKMTHMNGNKSQAPPGCTLYVYNIGYDANQEGITALFAQCGIVNKVDIMWDWQRQQCKGFCFVTMATQEEAQNAIQTLNGFMYTNKPLQVSLYSKR 312 HSP 2 Score: 82.8037 bits (203), Expect = 3.211e-17 Identity = 66/309 (21.36%), Postives = 129/309 (41.75%), Query Frame = 2
Query: 107 SLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDEN-GVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIV---------------------------------------YVAKFIPRTQRSTPNKDFTN-----------C--YIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVD-KEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKK 871
+L V + D+T+ F+ ++ + ++ R + S G+ +V+Y + +A+ A+D LN I + ++ +S+ P + N+++ N+ + E F +G I +C++ D++ G+ KG FV ++ + +A+ AI +++G + + A+F P P + T+ C Y+ N G + + + LF QCG + +M D + KGF FV+ E+A A+ TLNG + +K + V K+
Sbjct: 6 TLIVNYIPQDMTDQTFRMMFEAVASLNNCKIVRHKPSGWSYGFGFVDYNTTEDAQKAIDKLNGFTIGNKVLKVAFSR--PGGDNTKGANLYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYDKKAEAQAAISSLSGTFFPGSTMGLQIRYADDNSAKVRPPNNVPNFGQQMGGPGPIRPPANRFQARFNPMGGGPLPQQKMTHMNGNKSQAPPGCTLYVYNIGYDANQEGITALFAQCGIVNKVDIMWDWQRQQCKGFCFVTMATQEEAQNAIQTLNGFMYTNKPLQVSLYSKR 312 HSP 3 Score: 82.8037 bits (203), Expect = 3.211e-17 Identity = 54/203 (26.60%), Postives = 93/203 (45.81%), Query Frame = 2
Query: 668 LHDKSLRDLFEQCGEIVSAKVMVDK-EGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLR-----SQFQQRGHQPQPVFNP 1258
+ D++ R +FE + + K++ K G S GFGFV + EDA KA++ LNG I +K + V + + + G NLY+ N+ ++ + R F +GNI + +++ +K KG GFV + EA A+S ++G G + + + + +D A +R F Q+ P P+ P
Sbjct: 16 MTDQTFRMMFEAVASLNNCKIVRHKPSGWSYGFGFVDYNTTEDAQKAIDKLNGFTIGNKVLKVAFSRPGGDNTK-------------------GANLYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYDKKAEAQAAISSLSGTFFPGSTMGLQI-RYADDNSAKVRPPNNVPNFGQQMGGPGPIRPP 198
BLAST of Polyadenylate-binding protein vs. Ensembl Nematostella
Match: EDO42417 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S1S3]) HSP 1 Score: 94.7449 bits (234), Expect = 8.270e-21 Identity = 55/165 (33.33%), Postives = 97/165 (58.79%), Query Frame = 2
Query: 104 ASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVG-NIFIKNLDPSITVKEINDTFANFGEI-SSCKVQTD-ENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVA 589
A++YVG L V+EA+++E F G V+++ + +D +T+ GY +V + +A A+ +N ++G+P R+ ++ + VG N+FI NLD + K + DTF+ FG I + K+ D + G SKGFAF+NF ++ AI+A+NG+ + + + V+
Sbjct: 13 ATIYVGGLDEKVSEALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVEFLGEEDADYAIKVMNMIKVYGKPIRV--NKASAHNKNLDVGANLFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAAIEAMNGQYLCNRPITVS 175 HSP 2 Score: 82.4185 bits (202), Expect = 1.010e-16 Identity = 56/193 (29.02%), Postives = 96/193 (49.74%), Query Frame = 2
Query: 623 NKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGN-SKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNIT-SAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDR 1195
N+D T Y+ + + + +LF Q G +V+ + D+ +G+GFV F EDA A+ +N + K I V +A + + L G NL+I NL E++++ L + F+ FG I + K+M + + SKGF F+ F++ D + A+ MNG+ + +P+ V+ A KKE +
Sbjct: 10 NQDAT-IYVGGLDEKVSEALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVEFLGEEDADYAIKVMNMIKVYGKPIRVNKA---SAHNKNLDV---------------GANLFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKESK 183 HSP 3 Score: 48.1358 bits (113), Expect = 7.843e-6 Identity = 24/89 (26.97%), Postives = 52/89 (58.43%), Query Frame = 2
Query: 104 ASLYVGDLHPDVTEAILYEKFQTHGNVL-SIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWS-QRDPAARRSG 364
A+L++G+L +V E +LY+ F G +L + ++ RD T S G+A++N+ + +A++ +N + + RP + ++ +++ R G
Sbjct: 100 ANLFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKESKGERHG 188
BLAST of Polyadenylate-binding protein vs. Ensembl Nematostella
Match: EDO34879 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SN30]) HSP 1 Score: 85.8853 bits (211), Expect = 3.488e-18 Identity = 50/155 (32.26%), Postives = 88/155 (56.77%), Query Frame = 2
Query: 371 NIFIKNLDPSITVKEINDTFANFGEISSCKVQTDE-NGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQRSTPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVI 832
N+ I + PS++ ++I F G ++SCK+ D G S G+AFVN+++ DA KA++ +NG ++ K + V+ P ST K+ N YI + ++ + LF+ G+I+++KV+ D G +G GFV F + +A A++ LN + +
Sbjct: 11 NLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTLKVSFARP---SSTEIKN-ANLYISGLPKDMKEEEVEALFKPFGKIITSKVLKDVSGEGRGTGFVRFDKRCEAQTAIDDLNNKTL 161 HSP 2 Score: 77.0258 bits (188), Expect = 3.406e-15 Identity = 44/152 (28.95%), Postives = 81/152 (53.29%), Query Frame = 2
Query: 110 LYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMI 565
L + + P +++ + + F T GNV S ++ RD T +SLGYA+VNY +A A+ +N + + ++ +++ P++ N++I L + +E+ F FG+I + KV D +G +G FV F+ +A+ AI +N K +
Sbjct: 12 LIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTLKVSFAR--PSSTEIKNANLYISGLPKDMKEEEVEALFKPFGKIITSKVLKDVSGEGRGTGFVRFDKRCEAQTAIDDLNNKTL 161 HSP 3 Score: 67.3958 bits (163), Expect = 4.256e-12 Identity = 48/174 (27.59%), Postives = 80/174 (45.98%), Query Frame = 2
Query: 635 TNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKE-GNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEG 1153
TN I + + ++ +F G + S K++ D+ G S G+ FV++ +DA KAV +NG +++KT+ V A + + NLYI L ++ +E + F FG I ++KV L + +G GFV F EA A+ ++N K + G
Sbjct: 10 TNLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTLKVSFARPSSTEIKN-------------------ANLYISGLPKDMKEEEVEALFKPFGKIITSKV-LKDVSGEGRGTGFVRFDKRCEAQTAIDDLNNKTLPG 163 HSP 4 Score: 54.6842 bits (130), Expect = 5.541e-8 Identity = 27/84 (32.14%), Postives = 46/84 (54.76%), Query Frame = 2
Query: 947 VNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRV 1198
NL I + ++ E ++ F GN+TS K++ ++ S G+ FV + PD+A +AV EMNG ++ K L V+ A+ +
Sbjct: 10 TNLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTLKVSFARPSSTEI 93
BLAST of Polyadenylate-binding protein vs. Ensembl Medaka
Match: pabpc1a (poly(A) binding protein cytoplasmic 1 [Source:NCBI gene;Acc:101163762]) HSP 1 Score: 531.561 bits (1368), Expect = 1.041e-180 Identity = 300/633 (47.39%), Postives = 392/633 (61.93%), Query Frame = 2
Query: 89 PTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQRSTP----NKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRGHQ----PQPVFNP-------GMVNFMMNSNVQRPFMARPGNILQ----NRW------PQTMPYIQ-------PRNIGMPANQNIMMTGMPQNQQRRNIMVDPMM-NQNRNARPITGNVQLNQTR--PQYNMVANGRQGNNIMYQYPIQDNQPMLNPDQMKMPDIESQIDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHKGGEG 1882
P+ P ASLYVGDLHPDVTEA+LYEKF G +LSIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ I GRP RIMWSQRDP+ R+SGVGNIFIKNLD SI K + DTF+ FG I SCKV DENG SKG+ FV+F AE+AI+ +NG ++ ++ V+V +F R +R ++FTN YIKNFG + D+ L++LF G +S +VM D G SKGFGFVSF+ HEDA KAV+ +NG+ + + +YVGRA KK ERQ EL+ ++E+ +Q+R+ +++ GVNLY+KNL + ++DERLR EF+ FG ITSAKVM+ E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR P PV NP G + R + Q RW PQ IQ PR P N + N Q +M M Q + RP + R PQY R M Q PM P ++ Q LT S +A A E KQ+LGE+++PL+ +AGKITGM LE+DN+ELL+M+E+ SL+ K+DEA+ VL AH+ E
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKELFGNYGPALSVRVMTDDTGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQ-GVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRAAYYSANQLAQLRPSPRWATQGVRPQHFQNIQNAMRPSAPR----PQTFNAIRASTATNTQVPRMMASQRMPTQALSQRPAAASATTAPVRAMPQYKYAPGVRNPQQHMAS---QQQVPMPQPAV----HVQGQEPLTA-SMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
BLAST of Polyadenylate-binding protein vs. Ensembl Medaka
Match: pabpc4 (poly(A) binding protein cytoplasmic 4 [Source:NCBI gene;Acc:101159058]) HSP 1 Score: 529.25 bits (1362), Expect = 7.055e-180 Identity = 295/626 (47.12%), Postives = 404/626 (64.54%), Query Frame = 2
Query: 83 ANPTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQR----STPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQR--GHQPQPV------FNPGMVNFM--MNSNVQRPFMARPGNILQ----NRWPQTMPYIQPRNIGMPAN----------QNIMMTGMPQNQQRRNIMVDPMMNQNRNARPITGNVQLNQTRPQYNMVANGRQGN-NIMYQYPIQDNQPMLNPDQMKMPDIESQIDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHKG 1873
A + P ASLYVGDLHPD+TEA+LYEKF G VLSIRVCRD++TR+SLGYAYVN+ +A+ A+D +NF+ + G+P RIMWSQRDP+ R+SGVGN+FIKNLD SI K + DTF+ FG I SCKV DENG SKG+AFV+F + A++AI+ +NG ++ ++ V+V +F R +R K+FTN YIKNFG + D+ L+++FE+ G+ +S KVM D G S+GFGFVSF++HEDA KAV +NG + KT++VGRA KK ERQ EL+ ++E +QER+ +++ GVNLYIKNL + I+DE+LR EF+ FG+ITSAKVML E+ SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR G + P F P FM + R P + Q RW Q Q GMP++ +++ +G Q + + P RP G V +T Y + R N ++ +Q QP ++ I+ Q L T S +A A E KQ+LGE+++PL+ ++AGKITGM LE+DN+ELL+M+E+ SL+ K++EA+ VL AH+
Sbjct: 4 ATGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDEMEDEQLKEMFEKYGKTLSVKVMTDSSGKSRGFGFVSFEKHEDANKAVEEINGTELNGKTVFVGRAQKKMERQAELKRKFELLKQERISRYQ-GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRIAGMRAMPPNAIINQFQPTSGYFMPAVPQAQNRTTYYAPNQLAQMRPNPRWQQQGGRGQGGFQGMPSSLRQPGPRGNMRHMSPSGGSQGPRASGQSMAP--------RPSMG-VPGPRTMSPYKYATSVRNPNPQVVQPIALQQAQPAVH--------IQGQEPL-TASMLAAAPPQEQKQMLGERLFPLIQAMHANLAGKITGMLLEIDNSELLHMLESHESLQSKVEEAVAVLQAHQA 607
BLAST of Polyadenylate-binding protein vs. Ensembl Medaka
Match: pabpc1b (polyadenylate-binding protein 1-like [Source:NCBI gene;Acc:101169122]) HSP 1 Score: 526.168 bits (1354), Expect = 9.997e-179 Identity = 293/634 (46.21%), Postives = 400/634 (63.09%), Query Frame = 2
Query: 89 PTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQRSTP----NKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRG-------------HQPQPVFNPGMVNFMMNSNVQ----RPFMARPGNILQ----NRWPQTMPYIQPRNI-GMPANQNIMMTGMPQNQQ----RRNIMVDPMMNQNRNA-------RPITGNVQLNQTRPQYNMVANGRQGNNIMYQYPIQDNQPMLNPDQMKMPDIESQIDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHKGGE 1879
P+ P ASLYVGDLH DVTEA+LYEKF G ++SIRVCRD++TR+SLGYAYVN+Q +A+ A+D +NF+ I G+P RIMWSQRDP+ R+SGVGNIFIKNLD SI K + DTF+ FG I SCKV DENG S+G+ FV+F AE+AI+ +NG ++ ++ V+V +F R +R ++FTN YIKNFG + D+ L+++F + G S +VM D+ G +GFGFVSF+ HEDA KAV+ +NG+ + + ++VGRA KK ERQ EL+ R+E+ +Q+R +++ GVNLY+KNL + I+DERLR EF+ FG+ITSAKVM+ E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR +QP P F+M + Q + G + Q RW T ++P++ MP +M P+ Q R + V PMMN R A P+ + PQY R + P QP ++ I+ Q L T S +A A E KQ+LGE+++PL+ +AGKITGM LE+DN+ELL+M+E+ SL+ K+DEA+ VL AH+ E
Sbjct: 6 PSYPIASLYVGDLHQDVTEAMLYEKFSPAGAIVSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SRGYGFVHFETHDAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKEIFSKFGNATSVRVMTDESGGGRGFGFVSFENHEDAQKAVDEMNGKELNGRIMFVGRAQKKMERQMELKRRFEQMKQDRTTRYQ-GVNLYVKNLDDGIDDERLRKEFSPFGSITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLITQYMQRVANARAAANPVMNPYQPAPP-----SGFIMTAIPQAQSRSAYYPTAGQMAQLRPGPRW--TTQSVRPQHFQNMPG---VMRPPRPRPQNFSTVRASSQVPPMMNTQRVAAQSSGPRHPVATAATHVRGGPQYKYSTGVRNPQQHVATQPQVTLQPAVH--------IQGQEPL-TASMLAAAPLQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKE 616
BLAST of Polyadenylate-binding protein vs. Ensembl Medaka
Match: pabpc1l (embryonic polyadenylate-binding protein [Source:NCBI gene;Acc:101167536]) HSP 1 Score: 502.286 bits (1292), Expect = 3.208e-170 Identity = 275/601 (45.76%), Postives = 385/601 (64.06%), Query Frame = 2
Query: 83 ANPTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQR----STPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRGHQPQPVFNPGMVNFMMNSNVQRPFMARPGNILQNRWPQTMPYIQPRNIGMPANQNIMMTGMPQNQQRRNIMVDPMMNQNRNARPITGNVQLNQTRPQYNMVANGRQGNNIMYQYPIQDNQPMLNPDQMKMPDIESQIDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHKG 1873
P P ASLYVGDLHPDVTEA+LY+KF G ++SIRVCRD++TR+SLGYAY+N+Q +A+ A+D +N++ I GRP RIMWSQRDPA R+SGVGNIFIKN+D SI K + DTF+ FG I SCKV DE G SKG+ FV+F + A +AI+ +NG ++ ++ V+V F R +R T FTN YIKNFG +L D+ L++ F G+ +S +VM D++G S+GFGFV++ HEDA KAV+ +NG+ + K IYVGRA K+ ERQ EL+ ++++ +Q+R+Q+++ GVNLY+KNL + I+DERLR EF+ +G ITSAKVM E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ++E+R A L +++ QR + + +P +++ S P N + PR G P PQ+ +I+ R + IT Q + P+ +V M + P+ +L P+ + T S +A A M+ KQLLG+++YPL+ ++AGKITGM LE+DN+ELL+M+E+ SLK K+DEA+ VL AH+
Sbjct: 4 GGPGYPLASLYVGDLHPDVTEAMLYQKFSPAGPIVSIRVCRDIITRRSLGYAYINFQQPADAECALDTMNYDVIKGRPIRIMWSQRDPALRKSGVGNIFIKNIDDSIDNKALYDTFSAFGNILSCKVVCDERG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREVEFGTKVMKFTNIYIKNFGDNLTDEKLKEAFSAFGKTLSVRVMRDEKGRSRGFGFVNYAHHEDAQKAVDEMNGKEMNGKIIYVGRAQKRLERQGELKRKFDQLKQDRIQRYQ-GVNLYVKNLDDSIDDERLRKEFSPYGTITSAKVM--TEAGQSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRREERKAILTNKYMQRMATLRTMPSP-IIDSYHQSGYYMTVPQPPTRSFYNHNAVSNVRPIPRWPGQPQR--------PQDPYSSHIVGGSF--ARRGSTTITTVKQASTQAPRIIVVPVS------MVEPPVH----ILGPEPL------------TASMLAAAPPMDQKQLLGDRLYPLILAQQPNLAGKITGMLLEIDNSELLHMLESPESLKSKVDEAIAVLQAHQA 567
BLAST of Polyadenylate-binding protein vs. Ensembl Medaka
Match: pabpc1l (embryonic polyadenylate-binding protein [Source:NCBI gene;Acc:101167536]) HSP 1 Score: 492.656 bits (1267), Expect = 7.563e-166 Identity = 281/632 (44.46%), Postives = 394/632 (62.34%), Query Frame = 2
Query: 83 ANPTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQR----STPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKED-----------RVAHLRS-------QFQQRGHQ---PQPVFNPGMVNFMMNSNVQRPFMARPGNILQNRWPQTMPYIQPRNIGMPANQNIMMTGMPQNQQRRNIMVDPMMNQNRNARPITGNVQLN-----QTRPQYNMVANGRQGNNIMYQYPIQDNQPMLNPDQMKMPDIESQIDLT-----TTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHKG 1873
P P ASLYVGDLHPDVTEA+LY+KF G ++SIRVCRD++TR+SLGYAY+N+Q +A+ A+D +N++ I GRP RIMWSQRDPA R+SGVGNIFIKN+D SI K + DTF+ FG I SCKV DE G SKG+ FV+F + A +AI+ +NG ++ ++ V+V F R +R T FTN YIKNFG +L D+ L++ F G+ +S +VM D++G S+GFGFV++ HEDA KAV+ +NG+ + K IYVGRA K+ ERQ EL+ ++++ +Q+R+Q+++ GVNLY+KNL + I+DERLR EF+ +G ITSAKVM E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ++E+ R+A LR+ + Q G+ PQP N SNV RP RWP QP+ P + +I+ +R + + + + A I + Q QT VA + Y +++ ++ + + +E + + T S +A A M+ KQLLG+++YPL+ ++AGKITGM LE+DN+ELL+M+E+ SLK K+DEA+ VL AH+
Sbjct: 4 GGPGYPLASLYVGDLHPDVTEAMLYQKFSPAGPIVSIRVCRDIITRRSLGYAYINFQQPADAECALDTMNYDVIKGRPIRIMWSQRDPALRKSGVGNIFIKNIDDSIDNKALYDTFSAFGNILSCKVVCDERG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREVEFGTKVMKFTNIYIKNFGDNLTDEKLKEAFSAFGKTLSVRVMRDEKGRSRGFGFVNYAHHEDAQKAVDEMNGKEMNGKIIYVGRAQKRLERQGELKRKFDQLKQDRIQRYQ-GVNLYVKNLDDSIDDERLRKEFSPYGTITSAKVM--TEAGQSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRREERKAILTNKYMQRMATLRTMPSPIIDSYHQSGYYMTVPQPPTR-SFYNHNAVSNV-RPI---------PRWPG-----QPQRPQDPYSSHIVGGSF---ARRGSTTITTVKQASTQAPRIIASTQKTNNIGTQTVGGRADVAGVLRSGQYKYSSAVRNPLHVVTVPVVPVSMVEPPVHILGPEPLTASMLAAAPPMDQKQLLGDRLYPLILAQQPNLAGKITGMLLEIDNSELLHMLESPESLKSKVDEAIAVLQAHQA 612
BLAST of Polyadenylate-binding protein vs. Planmine SMEST
Match: SMESG000058745.1 (SMESG000058745.1) HSP 1 Score: 1266.91 bits (3277), Expect = 0.000e+0 Identity = 606/607 (99.84%), Postives = 606/607 (99.84%), Query Frame = 2
Query: 80 MANPTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQRSTPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRGHQPQPVFNPGMVNFMMNSNVQRPFMARPGNILQNRWPQTMPYIQPRNIGMPANQNIMMTGMPQNQQRRNIMVDPMMNQNRNARPITGNVQLNQTRPQYNMVANGRQGNNIMYQYPIQDNQPMLNPDQMKMPDIESQIDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHKGGEGDVVRHD 1900
MANPTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQRSTPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELR RYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRGHQPQPVFNPGMVNFMMNSNVQRPFMARPGNILQNRWPQTMPYIQPRNIGMPANQNIMMTGMPQNQQRRNIMVDPMMNQNRNARPITGNVQLNQTRPQYNMVANGRQGNNIMYQYPIQDNQPMLNPDQMKMPDIESQIDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHKGGEGDVVRHD
Sbjct: 1 MANPTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQRSTPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRGHQPQPVFNPGMVNFMMNSNVQRPFMARPGNILQNRWPQTMPYIQPRNIGMPANQNIMMTGMPQNQQRRNIMVDPMMNQNRNARPITGNVQLNQTRPQYNMVANGRQGNNIMYQYPIQDNQPMLNPDQMKMPDIESQIDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHKGGEGDVVRHD 607
BLAST of Polyadenylate-binding protein vs. Planmine SMEST
Match: SMESG000004978.1 (SMESG000004978.1) HSP 1 Score: 576.244 bits (1484), Expect = 0.000e+0 Identity = 323/665 (48.57%), Postives = 421/665 (63.31%), Query Frame = 2
Query: 86 NPTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQRSTPNKD--FTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRGHQPQ----------------PVFNPGMVNFMMNSNVQRPFMARPGNIL---QNRW-----PQTMPY----------------------IQPRNIGMPANQNIMMTGMPQ---------NQQRRNIMVDPMMNQNR----NARPITGNVQLNQTRPQYNMVANGRQGN----NIMYQYPIQDNQPMLNP-----DQMKMPDIESQIDLTTTSKIANADSMEAKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEAMLVLNAHK 1870
N +IP ASLYVGDLHP+VTEA++YEKF + G VLSIRVCRD++TRKSLGYAYVN+Q + +A+SA+D +NF+ + GR RIMWSQRDP+ R+SG+GNIFIKNLD SIT KE++DTF FG I SCK+ DE SKG+ FV+F E A AI AING +I+ K V+V +FIPRT R+ + D FTNCYIKNFG L D+ LR++F + GEI SAKVM+D+ G SKGFGFV FK+ E A AV LNG++ +D+ +YVGRA KK ER ELR+ +EK R ER ++ GVNLY+KNL + I+D RL+ EF VFGNITSAKVM + NN SKGFGFVCFS P+EAT+AV+EMNGKI KPLYVALAQ+KEDR AHL SQ+ QR + + P P ++ + N P + QNRW P + + IQ +GM ANQ ++ +P N N+M++ + N + N+RPITG VQ+ T Q + ++ R N I Q I NQ + P +Q+ + ++ T S +A+A E KQ+LGE++YPLV + ++AGKITGM LE+DN ELL+M+E+E+SL KI+EAM VL +HK
Sbjct: 9 NNSIPMASLYVGDLHPEVTEAMIYEKFSSCGPVLSIRVCRDMITRKSLGYAYVNFQNAADAESALDRMNFDTMKGRSIRIMWSQRDPSLRKSGIGNIFIKNLDKSITQKELHDTFVAFGNILSCKIAADERSKSKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTNRANSDSDVKFTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETAESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDTRLKQEFVVFGNITSAKVMTD-SNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYMQRVNPHRNNYPNQVSVNTLISGGPPGGPSILPYAFAPNASTPRVYTQSAAFMPPQNRWSNRMHPSQLQFNGGNMRQLANAHFGNMEGSSVPIQNNTMGMQANQIRQVSMIPNQRPMLSNNANVSASNVMMNGVANTVKSAPQNSRPITG-VQMPITS-QASNISQQRPPNQPTRQITGQSVISGNQNVNRPINNGSNQL----VSGNLEPLTISTLASAPIAEQKQMLGERLYPLVHRMYPELAGKITGMLLEIDNTELLHMLESEDSLTTKIEEAMNVLQSHK 666
BLAST of Polyadenylate-binding protein vs. Planmine SMEST
Match: SMESG000062663.1 (SMESG000062663.1) HSP 1 Score: 419.468 bits (1077), Expect = 8.873e-141 Identity = 205/383 (53.52%), Postives = 281/383 (73.37%), Query Frame = 2
Query: 80 MANPTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQRSTPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRE-LRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 1225
M N + ASLYVGDL+ DVTE+ L++ F+ G ++SI VCRDL+ SLGYAY+N+ S++AK+A+D +N E+I G PCR+ WSQRD + R+S VGNI IKNL ++TVKE+ + F FGEI+SC ++TDENG+SKG AFVNF+ G A+KAI++ING+ I++++VYV KFIP+ Q K FTN Y+KNFGIHL+++SL +LF GEI+S KVM ++G SKGFGFV FK H DA+K++ LN I DK IYVG A++K + E LRT K++ + Q VN+++KNL INDE+L+ EF+VFGN+TSAKVM++K N SKGFGFVCFS +EA +A+ EMN K++ K +YVA+A K+E+ H+ S+FQ+
Sbjct: 1 MENKNLNAASLYVGDLNKDVTESNLFDVFKNFGKIISIHVCRDLIKNVSLGYAYINFTNSSDAKAAIDKVNLENIKGTPCRVTWSQRDSSVRKSNVGNIIIKNLPQTVTVKELREKFECFGEITSCSMKTDENGLSKGCAFVNFSEAGYADKAIESINGQKIQDEVVYVGKFIPKDQLK---KTFTNVYVKNFGIHLNNQSLEELFSPFGEIISVKVMATEKGISKGFGFVCFKNHSDALKSIEKLNETTIIDKVIYVGLAVEKPKSVEEKLRTVESKSKDK--PQLVESVNVFVKNLDESINDEKLKAEFSVFGNVTSAKVMVDKSNGVSKGFGFVCFSNSNEAAQAILEMNYKVLCDKQIYVAVAYKRENSDNHVHSKFQK 378 HSP 2 Score: 127.102 bits (318), Expect = 2.277e-31 Identity = 88/284 (30.99%), Postives = 146/284 (51.41%), Query Frame = 2
Query: 110 LYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRI-MWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVA------KFIPRTQRSTPNK--------DFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKE-GNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKT 913
+ + +L VT L EKF+ G + S + D S G A+VN+ + A A++++N + I + + +D + N+++KN + + + + F+ FGEI S KV E G+SKGF FV F + DA K+I+ +N I +K++YV K + R+ +K + N ++KN ++D+ L+ F G + SAKVMVDK G SKGFGFV F +A +A+ +N +V+ DK IYV A K+ + ++++K+
Sbjct: 99 IIIKNLPQTVTVKELREKFECFGEITSCSMKTDE-NGLSKGCAFVNFSEAGYADKAIESINGQKIQDEVVYVGKFIPKDQLKKT--FTNVYVKNFGIHLNNQSLEELFSPFGEIISVKVMATEKGISKGFGFVCFKNHSDALKSIEKLNETTIIDKVIYVGLAVEKPKSVEEKLRTVESKSKDKPQLVESVNVFVKNLDESINDEKLKAEFSVFGNVTSAKVMVDKSNGVSKGFGFVCFSNSNEAAQAILEMNYKVLCDKQIYVAVAYKRENSDNHVHSKFQKS 379
BLAST of Polyadenylate-binding protein vs. Planmine SMEST
Match: SMESG000058799.1 (SMESG000058799.1) HSP 1 Score: 318.161 bits (814), Expect = 6.644e-95 Identity = 166/399 (41.60%), Postives = 253/399 (63.41%), Query Frame = 2
Query: 104 ASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQRSTPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRGHQPQPVFNPGMVNFMMNSNVQRP 1300
+ +++ +LHPDV E LY+ F ++G +LSIR+ R+ T+KSLG AY+ + ++AK+AMD +NF+ I+ CRI WS+ + R+S +GN+FIKNLD S+ K+I + F FGEI SCK++T+E G S GF FV ++ E AE AI+ +NGK+I K+VYV KF+ + R+ ++ TNCY+KN + ++ LR+LF GEIVS+ V VD +G SKG GFV+FK+H++A++A+ T+NG +I D+ I V A + + ++ N+YI L + +++ L EF++FG+ITSAKVM ++EN S G+GFVC+S P EA AV++MNGK +EGK ++V + K+ +V + +S + P+PV M N Q P
Sbjct: 579 SEIFLENLHPDVDEEFLYKLFHSYGEILSIRLMRNSETQKSLGVAYITFVRRSDAKTAMDKVNFKKIYRNECRIKWSESNKVIRKSEIGNVFIKNLDLSLNTKDIYEIFKRFGEIISCKLRTNEIGESLGFGFVRYDSEPTAELAIRKMNGKLIGNKVVYVGKFLSKQHRACVDEKSTNCYVKNLETSIDNEKLRELFAGFGEIVSSIVQVDSKGISKGRGFVAFKKHDEALRAITTMNGEMINDQRIEVSIAQHQMAKG---------------NKNALNCNVYINRLDSIVDETMLLKEFSIFGSITSAKVMRDEENKFSLGYGFVCYSNPQEAQLAVTKMNGKNLEGKKIFVNICGKRM-KVENYKS-CSENNPSPKPV--------MWTENRQEP 952 HSP 2 Score: 63.1586 bits (152), Expect = 6.888e-10 Identity = 30/53 (56.60%), Postives = 38/53 (71.70%), Query Frame = 2
Query: 1688 AKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKIDEA 1846
KQ+ GE +Y V KYAG+++GKI GMFLELDN EL ++E+EN L KI A
Sbjct: 963 TKQIFGELLYKKVEKYAGNLSGKIVGMFLELDNRELTTLLEDENELIKKIQMA 1015 HSP 3 Score: 53.5286 bits (127), Expect = 6.222e-7 Identity = 28/60 (46.67%), Postives = 40/60 (66.67%), Query Frame = 2
Query: 1685 EAKQLLGEKIYPLVSKYAGDMAGKITGM-FLELDNAELLYMIENENSLKMKIDEAMLVLN 1861
E KQ+ GEKIY +V +Y+ AGKIT M L LD +L+ +I++EN L+ +I+E LN
Sbjct: 141 EIKQIYGEKIYSIVKEYSPKEAGKITAMLLLALDETDLVKLIDDENLLRKQIEETFSWLN 200
BLAST of Polyadenylate-binding protein vs. Planmine SMEST
Match: SMESG000058799.1 (SMESG000058799.1) HSP 1 Score: 317.39 bits (812), Expect = 1.023e-94 Identity = 157/361 (43.49%), Postives = 239/361 (66.20%), Query Frame = 2
Query: 104 ASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQVSTEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNHEGDAEKAIQAINGKMIREKIVYVAKFIPRTQRSTPNKDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEGNSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKK 1186
+ +++ +LHPDV E LY+ F ++G +LSIR+ R+ T+KSLG AY+ + ++AK+AMD +NF+ I+ CRI WS+ + R+S +GN+FIKNLD S+ K+I + F FGEI SCK++T+E G S GF FV ++ E AE AI+ +NGK+I K+VYV KF+ + R+ ++ TNCY+KN + ++ LR+LF GEIVS+ V VD +G SKG GFV+FK+H++A++A+ T+NG +I D+ I V A + + ++ N+YI L + +++ L EF++FG+ITSAKVM ++EN S G+GFVC+S P EA AV++MNGK +EGK ++V + K+
Sbjct: 579 SEIFLENLHPDVDEEFLYKLFHSYGEILSIRLMRNSETQKSLGVAYITFVRRSDAKTAMDKVNFKKIYRNECRIKWSESNKVIRKSEIGNVFIKNLDLSLNTKDIYEIFKRFGEIISCKLRTNEIGESLGFGFVRYDSEPTAELAIRKMNGKLIGNKVVYVGKFLSKQHRACVDEKSTNCYVKNLETSIDNEKLRELFAGFGEIVSSIVQVDSKGISKGRGFVAFKKHDEALRAITTMNGEMINDQRIEVSIAQHQMAKG---------------NKNALNCNVYINRLDSIVDETMLLKEFSIFGSITSAKVMRDEENKFSLGYGFVCYSNPQEAQLAVTKMNGKNLEGKKIFVNICGKR 924 HSP 2 Score: 69.3218 bits (168), Expect = 7.559e-12 Identity = 57/201 (28.36%), Postives = 101/201 (50.25%), Query Frame = 2
Query: 608 QRSTPN--KDFTNCYIKNFGIHLHDKSLRDLFEQCGEIVSAKVMVDKEG-NSKGFGFVSFKEHEDAIKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRTRYEKTRQERLQQHKSGVNLYIKNLGNEINDERLRNEFAVFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVA 1201
Q++ P+ D + +++N + ++ L LF GEI+S ++M + E S G +++F DA A++ +N K IY + E R ++ ++ + +++ + G N++IKNL +N + + F FG I S K+ N E S GFGFV + + A A+ +MNGK++ K +YV K+ R
Sbjct: 568 QKTKPSWYSDDSEIFLENLHPDVDEEFLYKLFHSYGEILSIRLMRNSETQKSLGVAYITFVRRSDAKTAMDKVNF-----KKIY----------RNECRIKWSESNK-VIRKSEIG-NVFIKNLDLSLNTKDIYEIFKRFGEIISCKLRTN-EIGESLGFGFVRYDSEPTAELAIRKMNGKLIGNKVVYVGKFLSKQHRAC 750 HSP 3 Score: 62.3882 bits (150), Expect = 1.260e-9 Identity = 28/50 (56.00%), Postives = 37/50 (74.00%), Query Frame = 2
Query: 1688 AKQLLGEKIYPLVSKYAGDMAGKITGMFLELDNAELLYMIENENSLKMKI 1837
KQ+ GE +Y V KYAG+++GKI GMFLELDN EL ++E+EN L K+
Sbjct: 961 TKQIFGELLYKKVEKYAGNLSGKIVGMFLELDNRELTTLLEDENELIKKV 1010 HSP 4 Score: 53.5286 bits (127), Expect = 5.704e-7 Identity = 28/60 (46.67%), Postives = 40/60 (66.67%), Query Frame = 2
Query: 1685 EAKQLLGEKIYPLVSKYAGDMAGKITGM-FLELDNAELLYMIENENSLKMKIDEAMLVLN 1861
E KQ+ GEKIY +V +Y+ AGKIT M L LD +L+ +I++EN L+ +I+E LN
Sbjct: 141 EIKQIYGEKIYSIVKEYSPKEAGKITAMLLLALDETDLVKLIDDENLLRKQIEETFSWLN 200 The following BLAST results are available for this feature:
BLAST of Polyadenylate-binding protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of Polyadenylate-binding protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of Polyadenylate-binding protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of Polyadenylate-binding protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of Polyadenylate-binding protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of Polyadenylate-binding protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of Polyadenylate-binding protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Polyadenylate-binding protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Polyadenylate-binding protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of Polyadenylate-binding protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 5
BLAST of Polyadenylate-binding protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 5
BLAST of Polyadenylate-binding protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of Polyadenylate-binding protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of Polyadenylate-binding protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30005231 ID=SMED30005231|Name=Polyadenylate-binding protein|organism=Schmidtea mediterranea sexual|type=transcript|length=2255bpback to top protein sequence of SMED30005231-orf-1 >SMED30005231-orf-1 ID=SMED30005231-orf-1|Name=SMED30005231-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=608bp MANPTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
|
