SMED30005224
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30005224 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 3
Homology
BLAST of SMED30005224 vs. Ensembl Zebrafish
Match: CR354395.2 (pep chromosome:GRCz11:12:13553730:13556536:-1 gene:ENSDARG00000101547.2 transcript:ENSDART00000166396.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CR354395.2) HSP 1 Score: 68.5514 bits (166), Expect = 1.372e-13 Identity = 35/133 (26.32%), Postives = 66/133 (49.62%), Query Frame = -1 Query: 88 AYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*--KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDNTVSSKINYDDTIFMAIKMANNIENLQNDQEDND 480 A+ SR L ++NY +E LA+ + +R +L G +F + TDH L++L+ + + RW++ +DF + Y G N ADA+SR+ E+ +S + + +A + + +Q +N+ Sbjct: 500 AFFSRKLTSAERNYDVGNRELLAMKLALEEWRHWLEGASQQFTILTDHKNLEYLLSAKRLNPRQARWALFFTRFDFIVTYRPGSKNSKADALSRLSEDKTPISDETIIPTNLLVAPVQWDILTEIQEANRENN 632
BLAST of SMED30005224 vs. Ensembl Zebrafish
Match: CR749164.1 (pep chromosome:GRCz11:21:30355767:30361679:1 gene:ENSDARG00000116832.1 transcript:ENSDART00000189948.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CR749164.1) HSP 1 Score: 67.781 bits (164), Expect = 2.854e-13 Identity = 33/107 (30.84%), Postives = 59/107 (55.14%), Query Frame = -1 Query: 184 EKDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*K--FVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDNT 498 +K H A+ SR L ++NY +E LA+ + +R +L G K F+V TDH L+++ + + RW++ +DF++ Y G N ADA+SR+ +++ + Sbjct: 837 KKLHPCAFYSRKLNSAERNYDVGNRELLAMKAALEEWRHWLEGAKHPFIVITDHKNLEYIRSCKRLNPRQARWALFFTRFDFQVTYIPGSKNIKADALSRLSDDETS 943
BLAST of SMED30005224 vs. Ensembl Zebrafish
Match: BX546500.1 (pep chromosome:GRCz11:23:12926092:12931693:-1 gene:ENSDARG00000086495.3 transcript:ENSDART00000122176.3 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX546500.1) HSP 1 Score: 67.3958 bits (163), Expect = 3.501e-13 Identity = 39/125 (31.20%), Postives = 64/125 (51.20%), Query Frame = -1 Query: 127 KDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYL--VG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDNTVSSKINYDDTIFMAIKMAN 495 K H AY S L P ++NY +E LA+ + +R +L G F+V+TDH L+++ + S+ RW++ ++F I Y G N DA+SR+ + + +SS D + I +AN Sbjct: 818 KIHPCAYFSHRLSPAERNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTDHKNLEYIRSAKRLNSRQARWALFFGRFNFTISYRPGSKNIKPDALSRLFDPSDRLSSP---DPVLPQGIVVAN 939
BLAST of SMED30005224 vs. Ensembl Zebrafish
Match: BX571665.1 (pep chromosome:GRCz11:17:35431724:35437222:1 gene:ENSDARG00000111789.1 transcript:ENSDART00000190293.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX571665.1) HSP 1 Score: 67.0106 bits (162), Expect = 4.309e-13 Identity = 35/133 (26.32%), Postives = 65/133 (48.87%), Query Frame = -1 Query: 88 AYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*--KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDNTVSSKINYDDTIFMAIKMANNIENLQNDQEDND 480 A+ SR L ++NY +E LA+ + +R +L G +F + TDH L++L + + RW++ +DF + Y G N ADA+SR+ E+ +S + + +A + + +Q +N+ Sbjct: 835 AFFSRKLTSAERNYDVGNRELLAMKLALEEWRHWLEGASQQFTILTDHKNLEYLRSAKRLNPRQARWALFFTRFDFIVTYRPGSKNSKADALSRLSEDKTPISDETIIPTNLLVAPVQWDILTEIQEANRENN 967
BLAST of SMED30005224 vs. Ensembl Zebrafish
Match: CR533578.3 (pep chromosome:GRCz11:16:23466094:23471387:-1 gene:ENSDARG00000115891.1 transcript:ENSDART00000180899.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CR533578.3) HSP 1 Score: 67.0106 bits (162), Expect = 4.311e-13 Identity = 35/133 (26.32%), Postives = 65/133 (48.87%), Query Frame = -1 Query: 88 AYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*--KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDNTVSSKINYDDTIFMAIKMANNIENLQNDQEDND 480 A+ SR L ++NY +E LA+ + +R +L G +F + TDH L++L + + RW++ +DF + Y G N ADA+SR+ E+ +S + + +A + + +Q +N+ Sbjct: 842 AFFSRKLTSAERNYDVGNRELLAMKLALEEWRHWLEGASQQFTILTDHKNLEYLRSAKRLNPRQARWALFFTRFDFIVTYRPGSKNSKADALSRLSEDKTPISDETIIPTNLLVAPVQWDILTEIQEANRENN 974
BLAST of SMED30005224 vs. Ensembl Xenopus
Match: ENSXETT00000024810.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:KV464121.1:1437:3201:1 gene:ENSXETG00000014958.1 transcript:ENSXETT00000024810.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 105.531 bits (262), Expect = 1.144e-26 Identity = 50/115 (43.48%), Postives = 70/115 (60.87%), Query Frame = -1 Query: 148 DHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDNTVSSKINYDDTIF 492 +H I Y SR L P + Y+TIEKE LA+V+ + + YL G F V TDHNPL WL ++ KL+RWS+ALQ+++F I++ G + NAD +SR ED T + T+F Sbjct: 208 EHPIIYLSRKLLPREVAYATIEKECLAIVWALKKLQPYLFGSAFTVVTDHNPLSWLQRVSGDNGKLLRWSLALQQFNFTIQHRKGSHHGNADGLSRRDGEDCTGQGR----PTVF 318
BLAST of SMED30005224 vs. Ensembl Xenopus
Match: anxa6 (annexin A6 [Source:Xenbase;Acc:XB-GENE-989741]) HSP 1 Score: 105.916 bits (263), Expect = 1.682e-26 Identity = 48/102 (47.06%), Postives = 69/102 (67.65%), Query Frame = -1 Query: 190 KDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEED 495 ++H +AY SR L P + Y+TIEKE LA+V+ + + YL G +F V TDHNPL WL ++ KL+RWS+ LQ+Y+F I++ GK + NAD +SR +ED Sbjct: 657 EEHPVAYLSRKLLPREAAYATIEKECLAIVWALQKLQPYLYGREFTVVTDHNPLSWLQRVSGDNGKLLRWSLLLQQYNFTIQHRKGKEHHNADGLSR--QED 756
BLAST of SMED30005224 vs. Ensembl Xenopus
Match: ENSXETT00000011934.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:3:51966053:51967075:1 gene:ENSXETG00000005538.1 transcript:ENSXETT00000011934.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 91.6633 bits (226), Expect = 2.471e-22 Identity = 37/97 (38.14%), Postives = 65/97 (67.01%), Query Frame = -1 Query: 202 DHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRI 492 +H +AY SR L P + Y+ +E+E LA+ + + + R YL+G +F + TDH PL+W+ + R+ +++ RW ++LQ + F +++ GK NADA+SR+ Sbjct: 131 EHPVAYLSRKLTPAECRYAIVERECLAIKWALESLRYYLLGRQFKLITDHAPLKWMAQNREKNARVTRWFLSLQNFKFSVEHRPGKLQGNADALSRV 227
BLAST of SMED30005224 vs. Ensembl Xenopus
Match: ENSXETT00000006041.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:6:37317867:37322724:1 gene:ENSXETG00000003070.1 transcript:ENSXETT00000006041.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 73.559 bits (179), Expect = 3.237e-15 Identity = 37/99 (37.37%), Postives = 57/99 (57.58%), Query Frame = -1 Query: 190 IAYASRSLKPHKKNYSTIEKETLALVYGITN-FRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEED 483 +A+ SRSL P ++NY + E LAL + + + +YL G +F V TD+NPL +++ + RW AL Y F ++Y G+ N +AD +SR P D Sbjct: 672 VAFISRSLSPSERNYPAHKLEFLALKWAVVDKLHEYLYGAEFEVQTDNNPLTYILTTAKLDATGHRWLAALAHYKFSLRYRPGRDNRDADGLSRRPHGD 770
BLAST of SMED30005224 vs. Ensembl Xenopus
Match: ENSXETT00000035618.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:2:3692667:3694042:1 gene:ENSXETG00000010959.1 transcript:ENSXETT00000035618.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 71.2478 bits (173), Expect = 1.689e-14 Identity = 39/105 (37.14%), Postives = 58/105 (55.24%), Query Frame = -1 Query: 187 EKDHIIAYASRSLKPHKKNYSTIEKETLALVYGITN-FRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDN 498 +K +A+ SRSL P ++NY + E LAL + + + YL G +F V TD+NPL ++ + RW AL Y+F +KY G N +AD +SR P D+ Sbjct: 171 QKLRPVAFISRSLSPTERNYPAHKLEFLALKWAVVDKLHDYLYGAEFEVQTDNNPLTYIRTTAKLDATGHRWMAALSNYNFSLKYRPGHQNGDADGLSRRPHADS 275
BLAST of SMED30005224 vs. UniProt/SwissProt
Match: sp|P04323|POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 3.246e-28 Identity = 57/129 (44.19%), Postives = 79/129 (61.24%), Query Frame = -1 Query: 121 HIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDNTVSSKINY------DDTIFMAIKMANNI 489 H ++Y SR+L H+ NYSTIEKE LA+V+ FR YL+G F + +DH PL WL +++D SKL RW + L E+DF+IKY GK N ADA+SRI E+ +S + + D IF+ + N Sbjct: 529 HPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSRIKLEETYLSEQTQHSAEEDNSDLIFITERPLNTF 657
BLAST of SMED30005224 vs. UniProt/SwissProt
Match: sp|P20825|POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 1.897e-26 Identity = 50/104 (48.08%), Postives = 70/104 (67.31%), Query Frame = -1 Query: 187 EKDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDN 498 + H I++ SR+L H+ NYS IEKE LA+V+ FR YL+G +F++ +DH PL+WL L++ +KL RW + L EY F+I Y GK N ADA+SRI E+N Sbjct: 525 QNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALSRIKIEEN 628
BLAST of SMED30005224 vs. UniProt/SwissProt
Match: sp|Q8I7P9|POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 5.937e-23 Identity = 50/111 (45.05%), Postives = 74/111 (66.67%), Query Frame = -1 Query: 166 KDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFV-VFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDNTVSSKIN 495 +D IAY SRSL ++NY+TIEKE LA+++ + N R YL G + V+TDH PL + + R+ +KL RW ++EY+ E+ Y GKSN ADA+SRIP + N +S+ ++ Sbjct: 457 RDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKSNVVADALSRIPPQLNQLSTDLD 567
BLAST of SMED30005224 vs. UniProt/SwissProt
Match: sp|P10394|POL4_DROME (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.085e-18 Identity = 42/94 (44.68%), Postives = 60/94 (63.83%), Query Frame = -1 Query: 202 IAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRI 483 +AYASR+ + N ST E+E A+ + I +FR Y+ G F V TDH PL +L + + +SKL R + L+EY+F ++Y GK N ADA+SRI Sbjct: 642 VAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTDHRPLTYLFSMVNPSSKLTRIRLELEEYNFTVEYLKGKDNHVADALSRI 735
BLAST of SMED30005224 vs. UniProt/SwissProt
Match: sp|P10401|POLY_DROME (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.210e-12 Identity = 34/94 (36.17%), Postives = 60/94 (63.83%), Query Frame = -1 Query: 205 IAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFV-VFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSR 483 I SR+LK ++NY+T E+E LA+V+ + + +L G + + +FTDH PL + + R++ +K+ RW + +++ ++ Y GK N ADA+SR Sbjct: 517 ITMISRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFYKPGKENFVADALSR 610
BLAST of SMED30005224 vs. TrEMBL
Match: A0A0J7KIE0 (Enzymatic polyprotein endonuclease reverse OS=Lasius niger OX=67767 GN=RF55_10071 PE=4 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 3.536e-32 Identity = 67/166 (40.36%), Postives = 100/166 (60.24%), Query Frame = -1 Query: 1 KDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDNTVSSKINYDDTIF-MAIKMANNIENLQNDQEDNDELNQLRQHAVTIKKESDWEQVAKEKHKYV 495 +D IAYASR L P +KNYSTIEKE LA++Y + +FR YL G KF + TDH PL WL +++D +S+L+RW + L+EY++ + Y GK+N NADA+SR P +NY ++ + NL + E DE + R+ + ++++S E+V YV Sbjct: 267 QDLPIAYASRVLNPAEKNYSTIEKELLAIIYCVAHFRPYLYGRKFTLITDHQPLTWLCRVKDPSSRLMRWRLKLEEYEYTVIYKAGKTNCNADALSRNP---------VNYLVCPLEKRPRLPVRVSNLSDTSESEDEDDDTRRRKIPVRRQSS-ERVFCSTRPYV 422
BLAST of SMED30005224 vs. TrEMBL
Match: V5I864 (Retrovirus-related Pol polyprotein from transposon 17.6 (Fragment) OS=Anoplophora glabripennis OX=217634 GN=POL3 PE=4 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 5.520e-32 Identity = 57/94 (60.64%), Postives = 73/94 (77.66%), Query Frame = -1 Query: 202 IAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRI 483 I YASR+L H+ NYSTIEKE LA+V+ + NFR YL G KF+++TDH PLQWL L+D +SKL+RW + L EYD+EIKY G +N+ ADA+SRI Sbjct: 552 ICYASRTLNQHEINYSTIEKELLAIVWSVQNFRPYLFGRKFIIYTDHRPLQWLFNLKDPSSKLVRWKLKLSEYDYEIKYKPGTTNKVADALSRI 645
BLAST of SMED30005224 vs. TrEMBL
Match: A0A355ABF2 (Uncharacterized protein OS=Flavobacteriaceae bacterium OX=1871037 GN=DDZ39_05755 PE=4 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.495e-31 Identity = 63/116 (54.31%), Postives = 82/116 (70.69%), Query Frame = -1 Query: 160 ECEKDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDNTVSSKI-NYD 504 E KDH+IAYASR LK H+ NYS IEKE LA+VY + F Y+ K +++TD PLQWLM +DS+S+LIRWS+ LQEYD +IKY GK+N NAD +SR+ E + S + N+D Sbjct: 1665 EMLKDHVIAYASRILKSHEVNYSVIEKEALAIVYSVKQFHHYIWSRKIILYTDQRPLQWLMTHKDSSSRLIRWSLLLQEYDIDIKYRQGKANANADFLSRMDEPVQCMVSMLANFD 1780
BLAST of SMED30005224 vs. TrEMBL
Match: A0A0B1PCW2 (RT_RNaseH domain-containing protein OS=Trichuris suis OX=68888 GN=D918_10120 PE=4 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 4.771e-31 Identity = 66/164 (40.24%), Postives = 98/164 (59.76%), Query Frame = -1 Query: 7 EKDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDNTVSSKINYDDTIFMAIKMANNIENLQNDQEDNDELNQLRQHAVTIKKESDWEQVAKEKHK 498 ++ ++AYASR+L+P +KNYS IEKE LA+V+ FR +L+G KF V TDH PLQWL + +L RW++ LQE+D I Y G+SN NADA+SR P +D T ++ + + ++ N ENL N Q + + ++ + V+ D Q A E+ K Sbjct: 35 QEGRVVAYASRALRPAEKNYSVIEKECLAIVFATKKFRHFLLGSKFRVLTDHAPLQWLAA-QKMEGRLTRWAVMLQEFDMVIAYRPGQSNGNADALSRSPIQDQTAAA-------VGVWPELTN--ENLANAQRQDTTIRRVIEELVS---NDDGRQTATEEWK 185
BLAST of SMED30005224 vs. TrEMBL
Match: V5GQE1 (Retrovirus-related Pol polyprotein from transposon 17.6 (Fragment) OS=Anoplophora glabripennis OX=217634 GN=POL3 PE=4 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 4.797e-31 Identity = 61/121 (50.41%), Postives = 81/121 (66.94%), Query Frame = -1 Query: 151 EKDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRI-----PEEDNTVSSKINYDDTI 498 + DH I+YASR+L P + NYSTIEKE LA+V+ FR Y+ G KF++ TDH PLQWL L++ S+L+RW + L+EYD+EIKY GK N NAD +SRI P + N + + N D I Sbjct: 580 QNDHPISYASRTLNPAEINYSTIEKELLAIVWACKYFRPYIFGRKFIIQTDHKPLQWLFNLKEPNSRLVRWRLKLEEYDYEIKYKKGKQNTNADCLSRIKIDSNPIDINPIDTDTNPGDKI 700
BLAST of SMED30005224 vs. Ensembl Cavefish
Match: ENSAMXT00000041345.1 (pep primary_assembly:Astyanax_mexicanus-2.0:25:32334536:32339002:1 gene:ENSAMXG00000029230.1 transcript:ENSAMXT00000041345.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 100.523 bits (249), Expect = 8.276e-25 Identity = 46/99 (46.46%), Postives = 65/99 (65.66%), Query Frame = -1 Query: 196 DHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPE 492 +H++AYASR L+ ++NYST EKE LA+V+ + +R YL G F V TDH+ L W+ S+L RW+I LQ +DF ++Y GK N D +SRIP+ Sbjct: 947 EHVVAYASRLLQGAERNYSTAEKECLAVVWAVEKWRVYLEGRHFTVITDHSALSWVFNHPKPTSRLTRWAIRLQTFDFSVQYRKGKCNIVPDTLSRIPD 1045
BLAST of SMED30005224 vs. Ensembl Cavefish
Match: ENSAMXT00000030446.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000181.1:474500:475675:-1 gene:ENSAMXG00000036877.1 transcript:ENSAMXT00000030446.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 98.9821 bits (245), Expect = 1.065e-24 Identity = 44/98 (44.90%), Postives = 64/98 (65.31%), Query Frame = -1 Query: 199 DHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIP 492 + +IAY SR L ++NY +E LA+V G+ +FR Y+ G F++ TDH LQWLM+ R+ +L RW LQE+ FE+ + G+S+ NADA+SR P Sbjct: 183 ERVIAYYSRRLDKAERNYCVTRRELLAVVEGLKHFRPYVYGVPFLLRTDHASLQWLMRFREPEGQLARWISRLQEFSFEVVHRPGRSHGNADALSRRP 280
BLAST of SMED30005224 vs. Ensembl Cavefish
Match: ENSAMXT00000055509.1 (pep primary_assembly:Astyanax_mexicanus-2.0:21:13332550:13338191:1 gene:ENSAMXG00000030987.1 transcript:ENSAMXT00000055509.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 97.8265 bits (242), Expect = 8.794e-24 Identity = 38/97 (39.18%), Postives = 67/97 (69.07%), Query Frame = -1 Query: 205 KDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSR 495 ++H I Y SR+L P +K Y+ +E+E LA+ + + R +L G +F + TDH PLQW+ K +D+ +++ RW +ALQE+ F++++ G ++ +AD +SR Sbjct: 1251 EEHPILYISRALNPAEKRYAALEREALAIKWAVEELRYFLTGRQFTLVTDHAPLQWVSKHKDTNARVTRWFLALQEFSFQVRHRPGVAHADADGLSR 1347
BLAST of SMED30005224 vs. Ensembl Cavefish
Match: ENSAMXT00000038919.1 (pep primary_assembly:Astyanax_mexicanus-2.0:25:7611858:7613942:-1 gene:ENSAMXG00000031762.1 transcript:ENSAMXT00000038919.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 97.0561 bits (240), Expect = 1.351e-23 Identity = 44/100 (44.00%), Postives = 67/100 (67.00%), Query Frame = -1 Query: 199 EKDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIP 498 +++ ++AY SR L ++NY T +E LA+V ++FRQYL+G F V TDH+ L+WLM++++ +L RW L EYDF++ + G + NADAMSR P Sbjct: 156 DEERVLAYGSRRLSQTEQNYCTTRRELLAVVEFTSHFRQYLLGRTFTVRTDHSSLRWLMRMKEPEGQLARWLEKLGEYDFKVIHRPGAQHCNADAMSRRP 255
BLAST of SMED30005224 vs. Ensembl Cavefish
Match: ENSAMXT00000044431.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000182.1:892613:897532:1 gene:ENSAMXG00000038169.1 transcript:ENSAMXT00000044431.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 96.2857 bits (238), Expect = 2.369e-23 Identity = 39/98 (39.80%), Postives = 65/98 (66.33%), Query Frame = -1 Query: 199 DHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIP 492 +H I + S+ L P ++ Y+ IE+E LA+ + + R YL+G F + TDH PLQWL +D+ +K+ RW ++LQ+++F + + G + NADA+SR+P Sbjct: 1089 EHPILFLSKKLNPTERRYAAIEREALAIKWALNELRFYLLGRPFTLVTDHAPLQWLANAKDTNAKITRWFLSLQDFNFSLLHRPGSLHGNADALSRLP 1186
BLAST of SMED30005224 vs. Ensembl Medaka
Match: ENSORLT00000040657.1 (pep primary_assembly:ASM223467v1:20:11246761:11253480:-1 gene:ENSORLG00000026665.1 transcript:ENSORLT00000040657.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 100.523 bits (249), Expect = 8.548e-25 Identity = 43/99 (43.43%), Postives = 69/99 (69.70%), Query Frame = -1 Query: 193 HIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEE 489 H +AY SR L P + +YST+EKE LA+ + + +F+ YL+G +F + TDH LQWL K++D+ +++ RW +A+Q Y +++ Y G+ N AD +SR P+E Sbjct: 1370 HPVAYISRKLLPREIHYSTVEKEALAVKWAMDSFKYYLLGREFTLETDHRALQWLEKMKDTNARITRWYLAMQPYRYKVNYIPGRDNITADYLSRAPDE 1468
BLAST of SMED30005224 vs. Ensembl Medaka
Match: ENSORLT00000027608.1 (pep primary_assembly:ASM223467v1:1:30064408:30068871:-1 gene:ENSORLG00000026546.1 transcript:ENSORLT00000027608.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 100.523 bits (249), Expect = 8.548e-25 Identity = 43/99 (43.43%), Postives = 69/99 (69.70%), Query Frame = -1 Query: 193 HIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEE 489 H +AY SR L P + +YST+EKE LA+ + + +F+ YL+G +F + TDH LQWL K++D+ +++ RW +A+Q Y +++ Y G+ N AD +SR P+E Sbjct: 1370 HPVAYISRKLLPREIHYSTVEKEALAVKWAMDSFKYYLLGREFTLETDHRALQWLEKMKDTNARITRWYLAMQPYRYKVNYIPGRDNITADYLSRAPDE 1468
BLAST of SMED30005224 vs. Ensembl Medaka
Match: ENSORLT00000030791.1 (pep primary_assembly:ASM223467v1:19:17006293:17008599:1 gene:ENSORLG00000025478.1 transcript:ENSORLT00000030791.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 98.9821 bits (245), Expect = 2.575e-24 Identity = 45/102 (44.12%), Postives = 70/102 (68.63%), Query Frame = -1 Query: 193 EKDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEE 498 E+ H +AY SR L P + YST+EKETLA+ + + + R YL+G +F++ TDH LQWL K++DS ++ RW +++Q + F I++ GK N AD +SR P++ Sbjct: 650 EERHPVAYVSRKLLPREVRYSTVEKETLAIKWALDSLRYYLLGREFILETDHKALQWLNKMKDSNGRITRWYLSMQPFCFTIRHVPGKINCIADYLSRRPDQ 751
BLAST of SMED30005224 vs. Ensembl Medaka
Match: ENSORLT00000041940.1 (pep primary_assembly:ASM223467v1:3:114973:116062:1 gene:ENSORLG00000022411.1 transcript:ENSORLT00000041940.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 97.4413 bits (241), Expect = 2.989e-24 Identity = 52/153 (33.99%), Postives = 83/153 (54.25%), Query Frame = -1 Query: 67 EKDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPE-----EDNTVSSKINYDDTIFMAIK----MANNIENLQNDQEDNDELNQLRQ 498 + + +IAYASR L+ +KNYST EKE LA+V+ + +R YL G +F V+TDH L W ++S+L RW + LQ++ F++ Y G N DA+SR+ E S N + +A+K + + + +Q+ + + LRQ Sbjct: 203 QGECVIAYASRVLRGPEKNYSTSEKECLAVVWAVEKWRHYLEGQEFTVYTDHAALSWAFNCPKTSSRLTRWILRLQQFCFKVHYRKGCLNTGPDALSRVVEPLVIRPGPQTYSHHNSAPCLKIAVKPFSDLPATLAEIAQEQDKDPVVRDLRQ 355
BLAST of SMED30005224 vs. Ensembl Medaka
Match: ENSORLT00000040305.1 (pep primary_assembly:ASM223467v1:1:25459511:25466649:-1 gene:ENSORLG00000028409.1 transcript:ENSORLT00000040305.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 98.5969 bits (244), Expect = 4.227e-24 Identity = 44/99 (44.44%), Postives = 68/99 (68.69%), Query Frame = -1 Query: 199 KDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIP 495 ++ ++AY SR L ++NY T +E LA+V ++FRQYL+G FV+ TDH+ L+WL +L++ +L RW L EYDF++ + GK ++NADA+SR P Sbjct: 1150 EERVLAYGSRRLTTTEQNYCTTRRELLAVVEFTSHFRQYLLGRSFVLRTDHSSLRWLTRLKEPEGQLARWLEKLAEYDFQVLHRPGKVHQNADALSRRP 1248
BLAST of SMED30005224 vs. Planmine SMEST
Match: SMESG000056661.1 (SMESG000056661.1) HSP 1 Score: 272.322 bits (695), Expect = 8.325e-85 Identity = 128/169 (75.74%), Postives = 149/169 (88.17%), Query Frame = -1 Query: 1 LECEKDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDNTVSSKINYDDTIFMAIKMANNIENLQNDQEDNDELNQLRQHAVTIKKESDWEQVAKEKHKYV 507 +E EKDH+IAYASR+LKPH+KNYSTIEK+TLALVYGI FRQYLVG KFVVFTDHNPLQWLMK RDSASKLIRWSIALQEYDFEIKY TGKS NAD +SRIP + + +++ NY++TIFMAIK ANN++ LQ DQE++DELNQLR+HAVTIK ESDW+ V +EKHKY+ Sbjct: 1876 VEGEKDHVIAYASRTLKPHEKNYSTIEKKTLALVYGIATFRQYLVGRKFVVFTDHNPLQWLMKHRDSASKLIRWSIALQEYDFEIKYRTGKSKGNADTLSRIPVNNESKNNETNYNNTIFMAIKTANNLQELQKDQENDDELNQLRKHAVTIKMESDWKHVVEEKHKYI 2044
BLAST of SMED30005224 vs. Planmine SMEST
Match: SMESG000056661.1 (SMESG000056661.1) HSP 1 Score: 272.322 bits (695), Expect = 8.497e-85 Identity = 128/169 (75.74%), Postives = 149/169 (88.17%), Query Frame = -1 Query: 1 LECEKDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDNTVSSKINYDDTIFMAIKMANNIENLQNDQEDNDELNQLRQHAVTIKKESDWEQVAKEKHKYV 507 +E EKDH+IAYASR+LKPH+KNYSTIEK+TLALVYGI FRQYLVG KFVVFTDHNPLQWLMK RDSASKLIRWSIALQEYDFEIKY TGKS NAD +SRIP + + +++ NY++TIFMAIK ANN++ LQ DQE++DELNQLR+HAVTIK ESDW+ V +EKHKY+ Sbjct: 1942 VEGEKDHVIAYASRTLKPHEKNYSTIEKKTLALVYGIATFRQYLVGRKFVVFTDHNPLQWLMKHRDSASKLIRWSIALQEYDFEIKYRTGKSKGNADTLSRIPVNNESKNNETNYNNTIFMAIKTANNLQELQKDQENDDELNQLRKHAVTIKMESDWKHVVEEKHKYI 2110
BLAST of SMED30005224 vs. Planmine SMEST
Match: SMESG000056661.1 (SMESG000056661.1) HSP 1 Score: 271.937 bits (694), Expect = 8.651e-85 Identity = 128/169 (75.74%), Postives = 149/169 (88.17%), Query Frame = -1 Query: 1 LECEKDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDNTVSSKINYDDTIFMAIKMANNIENLQNDQEDNDELNQLRQHAVTIKKESDWEQVAKEKHKYV 507 +E EKDH+IAYASR+LKPH+KNYSTIEK+TLALVYGI FRQYLVG KFVVFTDHNPLQWLMK RDSASKLIRWSIALQEYDFEIKY TGKS NAD +SRIP + + +++ NY++TIFMAIK ANN++ LQ DQE++DELNQLR+HAVTIK ESDW+ V +EKHKY+ Sbjct: 1834 VEGEKDHVIAYASRTLKPHEKNYSTIEKKTLALVYGIATFRQYLVGRKFVVFTDHNPLQWLMKHRDSASKLIRWSIALQEYDFEIKYRTGKSKGNADTLSRIPVNNESKNNETNYNNTIFMAIKTANNLQELQKDQENDDELNQLRKHAVTIKMESDWKHVVEEKHKYI 2002
BLAST of SMED30005224 vs. Planmine SMEST
Match: SMESG000056661.1 (SMESG000056661.1) HSP 1 Score: 271.937 bits (694), Expect = 9.426e-85 Identity = 128/169 (75.74%), Postives = 149/169 (88.17%), Query Frame = -1 Query: 1 LECEKDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDNTVSSKINYDDTIFMAIKMANNIENLQNDQEDNDELNQLRQHAVTIKKESDWEQVAKEKHKYV 507 +E EKDH+IAYASR+LKPH+KNYSTIEK+TLALVYGI FRQYLVG KFVVFTDHNPLQWLMK RDSASKLIRWSIALQEYDFEIKY TGKS NAD +SRIP + + +++ NY++TIFMAIK ANN++ LQ DQE++DELNQLR+HAVTIK ESDW+ V +EKHKY+ Sbjct: 1740 VEGEKDHVIAYASRTLKPHEKNYSTIEKKTLALVYGIATFRQYLVGRKFVVFTDHNPLQWLMKHRDSASKLIRWSIALQEYDFEIKYRTGKSKGNADTLSRIPVNNESKNNETNYNNTIFMAIKTANNLQELQKDQENDDELNQLRKHAVTIKMESDWKHVVEEKHKYI 1908
BLAST of SMED30005224 vs. Planmine SMEST
Match: SMESG000057446.1 (SMESG000057446.1) HSP 1 Score: 269.626 bits (688), Expect = 7.401e-84 Identity = 129/169 (76.33%), Postives = 148/169 (87.57%), Query Frame = -1 Query: 1 LECEKDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDNTVSSKINYDDTIFMAIKMANNIENLQNDQEDNDELNQLRQHAVTIKKESDWEQVAKEKHKYV 507 +E EKDH+IAYASR+LKPH+KNYSTIEKETLALVYGI FRQYLVG KFVV T HNPLQWLMK DSASKLIRWSIALQEYDFEIKY TGKSN NAD +SRIP + ++++NY++TIFMAIK ANN++ LQ DQE++DELNQLR+HAVTIKKESDW+ VA EKHKY+ Sbjct: 2177 VEGEKDHVIAYASRTLKPHEKNYSTIEKETLALVYGIATFRQYLVGRKFVVLTYHNPLQWLMKHWDSASKLIRWSIALQEYDFEIKYRTGKSNGNADTLSRIPVNNERKNNEMNYNNTIFMAIKTANNLQELQKDQENDDELNQLRKHAVTIKKESDWKHVADEKHKYI 2345 The following BLAST results are available for this feature:
BLAST of SMED30005224 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30005224 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30005224 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30005224 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of SMED30005224 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of SMED30005224 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30005224 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of SMED30005224 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30005224 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of SMED30005224 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30005224 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30005224 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30005224 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of SMED30005224 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30005224 ID=SMED30005224|Name=SMED30005224|organism=Schmidtea mediterranea sexual|type=transcript|length=507bpback to top protein sequence of SMED30005224-orf-1 >SMED30005224-orf-1 ID=SMED30005224-orf-1|Name=SMED30005224-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=108bp MKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDNTVSSback to top Annotated Terms
The following terms have been associated with this transcript:
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