SMED30005224

Overview
NameSMED30005224
Smed IDSMED30005224
Length (bp)507
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30005224 (SMED30005224) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30005224 (SMED30005224) in cells (dots) of each of the 12 neoblast clusters.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30005224

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 3

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
epidermisSMED30005224 dd_Smed_v4_22501_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30005224 dd_Smed_v4_22501_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30005224 dd_Smed_v4_22501_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SMED30005224 vs. Ensembl Zebrafish
Match: CR354395.2 (pep chromosome:GRCz11:12:13553730:13556536:-1 gene:ENSDARG00000101547.2 transcript:ENSDART00000166396.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CR354395.2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.372e-13
Identity = 35/133 (26.32%), Postives = 66/133 (49.62%), Query Frame = -1 
Query:   88 AYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*--KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDNTVSSKINYDDTIFMAIKMANNIENLQNDQEDND 480
            A+ SR L   ++NY    +E LA+   +  +R +L G   +F + TDH  L++L+  +    +  RW++    +DF + Y  G  N  ADA+SR+ E+   +S +      + +A    + +  +Q    +N+
Sbjct:  500 AFFSRKLTSAERNYDVGNRELLAMKLALEEWRHWLEGASQQFTILTDHKNLEYLLSAKRLNPRQARWALFFTRFDFIVTYRPGSKNSKADALSRLSEDKTPISDETIIPTNLLVAPVQWDILTEIQEANRENN 632
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BLAST of SMED30005224 vs. Ensembl Zebrafish
Match: CR749164.1 (pep chromosome:GRCz11:21:30355767:30361679:1 gene:ENSDARG00000116832.1 transcript:ENSDART00000189948.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CR749164.1)

HSP 1 Score: 67.781 bits (164), Expect = 2.854e-13
Identity = 33/107 (30.84%), Postives = 59/107 (55.14%), Query Frame = -1 
Query:  184 EKDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*K--FVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDNT 498
            +K H  A+ SR L   ++NY    +E LA+   +  +R +L G K  F+V TDH  L+++   +    +  RW++    +DF++ Y  G  N  ADA+SR+ +++ +
Sbjct:  837 KKLHPCAFYSRKLNSAERNYDVGNRELLAMKAALEEWRHWLEGAKHPFIVITDHKNLEYIRSCKRLNPRQARWALFFTRFDFQVTYIPGSKNIKADALSRLSDDETS 943
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BLAST of SMED30005224 vs. Ensembl Zebrafish
Match: BX546500.1 (pep chromosome:GRCz11:23:12926092:12931693:-1 gene:ENSDARG00000086495.3 transcript:ENSDART00000122176.3 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX546500.1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.501e-13
Identity = 39/125 (31.20%), Postives = 64/125 (51.20%), Query Frame = -1 
Query:  127 KDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYL--VG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDNTVSSKINYDDTIFMAIKMAN 495
            K H  AY S  L P ++NY    +E LA+   +  +R +L   G  F+V+TDH  L+++   +   S+  RW++    ++F I Y  G  N   DA+SR+ +  + +SS    D  +   I +AN
Sbjct:  818 KIHPCAYFSHRLSPAERNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTDHKNLEYIRSAKRLNSRQARWALFFGRFNFTISYRPGSKNIKPDALSRLFDPSDRLSSP---DPVLPQGIVVAN 939
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BLAST of SMED30005224 vs. Ensembl Zebrafish
Match: BX571665.1 (pep chromosome:GRCz11:17:35431724:35437222:1 gene:ENSDARG00000111789.1 transcript:ENSDART00000190293.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX571665.1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.309e-13
Identity = 35/133 (26.32%), Postives = 65/133 (48.87%), Query Frame = -1 
Query:   88 AYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*--KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDNTVSSKINYDDTIFMAIKMANNIENLQNDQEDND 480
            A+ SR L   ++NY    +E LA+   +  +R +L G   +F + TDH  L++L   +    +  RW++    +DF + Y  G  N  ADA+SR+ E+   +S +      + +A    + +  +Q    +N+
Sbjct:  835 AFFSRKLTSAERNYDVGNRELLAMKLALEEWRHWLEGASQQFTILTDHKNLEYLRSAKRLNPRQARWALFFTRFDFIVTYRPGSKNSKADALSRLSEDKTPISDETIIPTNLLVAPVQWDILTEIQEANRENN 967
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BLAST of SMED30005224 vs. Ensembl Zebrafish
Match: CR533578.3 (pep chromosome:GRCz11:16:23466094:23471387:-1 gene:ENSDARG00000115891.1 transcript:ENSDART00000180899.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CR533578.3)

HSP 1 Score: 67.0106 bits (162), Expect = 4.311e-13
Identity = 35/133 (26.32%), Postives = 65/133 (48.87%), Query Frame = -1 
Query:   88 AYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*--KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDNTVSSKINYDDTIFMAIKMANNIENLQNDQEDND 480
            A+ SR L   ++NY    +E LA+   +  +R +L G   +F + TDH  L++L   +    +  RW++    +DF + Y  G  N  ADA+SR+ E+   +S +      + +A    + +  +Q    +N+
Sbjct:  842 AFFSRKLTSAERNYDVGNRELLAMKLALEEWRHWLEGASQQFTILTDHKNLEYLRSAKRLNPRQARWALFFTRFDFIVTYRPGSKNSKADALSRLSEDKTPISDETIIPTNLLVAPVQWDILTEIQEANRENN 974
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BLAST of SMED30005224 vs. Ensembl Xenopus
Match: ENSXETT00000024810.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:KV464121.1:1437:3201:1 gene:ENSXETG00000014958.1 transcript:ENSXETT00000024810.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 105.531 bits (262), Expect = 1.144e-26
Identity = 50/115 (43.48%), Postives = 70/115 (60.87%), Query Frame = -1 
Query:  148 DHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDNTVSSKINYDDTIF 492
            +H I Y SR L P +  Y+TIEKE LA+V+ +   + YL G  F V TDHNPL WL ++     KL+RWS+ALQ+++F I++  G  + NAD +SR   ED T   +     T+F
Sbjct:  208 EHPIIYLSRKLLPREVAYATIEKECLAIVWALKKLQPYLFGSAFTVVTDHNPLSWLQRVSGDNGKLLRWSLALQQFNFTIQHRKGSHHGNADGLSRRDGEDCTGQGR----PTVF 318
[Close]
BLAST of SMED30005224 vs. Ensembl Xenopus
Match: anxa6 (annexin A6 [Source:Xenbase;Acc:XB-GENE-989741])

HSP 1 Score: 105.916 bits (263), Expect = 1.682e-26
Identity = 48/102 (47.06%), Postives = 69/102 (67.65%), Query Frame = -1 
Query:  190 KDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEED 495
            ++H +AY SR L P +  Y+TIEKE LA+V+ +   + YL G +F V TDHNPL WL ++     KL+RWS+ LQ+Y+F I++  GK + NAD +SR  +ED
Sbjct:  657 EEHPVAYLSRKLLPREAAYATIEKECLAIVWALQKLQPYLYGREFTVVTDHNPLSWLQRVSGDNGKLLRWSLLLQQYNFTIQHRKGKEHHNADGLSR--QED 756
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BLAST of SMED30005224 vs. Ensembl Xenopus
Match: ENSXETT00000011934.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:3:51966053:51967075:1 gene:ENSXETG00000005538.1 transcript:ENSXETT00000011934.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 91.6633 bits (226), Expect = 2.471e-22
Identity = 37/97 (38.14%), Postives = 65/97 (67.01%), Query Frame = -1 
Query:  202 DHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRI 492
            +H +AY SR L P +  Y+ +E+E LA+ + + + R YL+G +F + TDH PL+W+ + R+  +++ RW ++LQ + F +++  GK   NADA+SR+
Sbjct:  131 EHPVAYLSRKLTPAECRYAIVERECLAIKWALESLRYYLLGRQFKLITDHAPLKWMAQNREKNARVTRWFLSLQNFKFSVEHRPGKLQGNADALSRV 227
[Close]
BLAST of SMED30005224 vs. Ensembl Xenopus
Match: ENSXETT00000006041.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:6:37317867:37322724:1 gene:ENSXETG00000003070.1 transcript:ENSXETT00000006041.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 73.559 bits (179), Expect = 3.237e-15
Identity = 37/99 (37.37%), Postives = 57/99 (57.58%), Query Frame = -1 
Query:  190 IAYASRSLKPHKKNYSTIEKETLALVYGITN-FRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEED 483
            +A+ SRSL P ++NY   + E LAL + + +   +YL G +F V TD+NPL +++      +   RW  AL  Y F ++Y  G+ N +AD +SR P  D
Sbjct:  672 VAFISRSLSPSERNYPAHKLEFLALKWAVVDKLHEYLYGAEFEVQTDNNPLTYILTTAKLDATGHRWLAALAHYKFSLRYRPGRDNRDADGLSRRPHGD 770
[Close]
BLAST of SMED30005224 vs. Ensembl Xenopus
Match: ENSXETT00000035618.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:2:3692667:3694042:1 gene:ENSXETG00000010959.1 transcript:ENSXETT00000035618.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 71.2478 bits (173), Expect = 1.689e-14
Identity = 39/105 (37.14%), Postives = 58/105 (55.24%), Query Frame = -1 
Query:  187 EKDHIIAYASRSLKPHKKNYSTIEKETLALVYGITN-FRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDN 498
            +K   +A+ SRSL P ++NY   + E LAL + + +    YL G +F V TD+NPL ++       +   RW  AL  Y+F +KY  G  N +AD +SR P  D+
Sbjct:  171 QKLRPVAFISRSLSPTERNYPAHKLEFLALKWAVVDKLHDYLYGAEFEVQTDNNPLTYIRTTAKLDATGHRWMAALSNYNFSLKYRPGHQNGDADGLSRRPHADS 275
[Close]
BLAST of SMED30005224 vs. UniProt/SwissProt
Match: sp|P04323|POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 3.246e-28
Identity = 57/129 (44.19%), Postives = 79/129 (61.24%), Query Frame = -1 
Query:  121 HIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDNTVSSKINY------DDTIFMAIKMANNI 489
            H ++Y SR+L  H+ NYSTIEKE LA+V+    FR YL+G  F + +DH PL WL +++D  SKL RW + L E+DF+IKY  GK N  ADA+SRI  E+  +S +  +       D IF+  +  N  
Sbjct:  529 HPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSRIKLEETYLSEQTQHSAEEDNSDLIFITERPLNTF 657
[Close]
BLAST of SMED30005224 vs. UniProt/SwissProt
Match: sp|P20825|POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.897e-26
Identity = 50/104 (48.08%), Postives = 70/104 (67.31%), Query Frame = -1 
Query:  187 EKDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDN 498
            +  H I++ SR+L  H+ NYS IEKE LA+V+    FR YL+G +F++ +DH PL+WL  L++  +KL RW + L EY F+I Y  GK N  ADA+SRI  E+N
Sbjct:  525 QNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALSRIKIEEN 628
[Close]
BLAST of SMED30005224 vs. UniProt/SwissProt
Match: sp|Q8I7P9|POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.937e-23
Identity = 50/111 (45.05%), Postives = 74/111 (66.67%), Query Frame = -1 
Query:  166 KDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFV-VFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDNTVSSKIN 495
            +D  IAY SRSL   ++NY+TIEKE LA+++ + N R YL G   + V+TDH PL + +  R+  +KL RW   ++EY+ E+ Y  GKSN  ADA+SRIP + N +S+ ++
Sbjct:  457 RDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKSNVVADALSRIPPQLNQLSTDLD 567
[Close]
BLAST of SMED30005224 vs. UniProt/SwissProt
Match: sp|P10394|POL4_DROME (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.085e-18
Identity = 42/94 (44.68%), Postives = 60/94 (63.83%), Query Frame = -1 
Query:  202 IAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRI 483
            +AYASR+    + N ST E+E  A+ + I +FR Y+ G  F V TDH PL +L  + + +SKL R  + L+EY+F ++Y  GK N  ADA+SRI
Sbjct:  642 VAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTDHRPLTYLFSMVNPSSKLTRIRLELEEYNFTVEYLKGKDNHVADALSRI 735
[Close]
BLAST of SMED30005224 vs. UniProt/SwissProt
Match: sp|P10401|POLY_DROME (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.210e-12
Identity = 34/94 (36.17%), Postives = 60/94 (63.83%), Query Frame = -1 
Query:  205 IAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFV-VFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSR 483
            I   SR+LK  ++NY+T E+E LA+V+ +   + +L G + + +FTDH PL + +  R++ +K+ RW   + +++ ++ Y  GK N  ADA+SR
Sbjct:  517 ITMISRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFYKPGKENFVADALSR 610
[Close]
BLAST of SMED30005224 vs. TrEMBL
Match: A0A0J7KIE0 (Enzymatic polyprotein endonuclease reverse OS=Lasius niger OX=67767 GN=RF55_10071 PE=4 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.536e-32
Identity = 67/166 (40.36%), Postives = 100/166 (60.24%), Query Frame = -1 
Query:    1 KDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDNTVSSKINYDDTIF-MAIKMANNIENLQNDQEDNDELNQLRQHAVTIKKESDWEQVAKEKHKYV 495
            +D  IAYASR L P +KNYSTIEKE LA++Y + +FR YL G KF + TDH PL WL +++D +S+L+RW + L+EY++ + Y  GK+N NADA+SR P         +NY         ++   + NL +  E  DE +  R+  + ++++S  E+V      YV
Sbjct:  267 QDLPIAYASRVLNPAEKNYSTIEKELLAIIYCVAHFRPYLYGRKFTLITDHQPLTWLCRVKDPSSRLMRWRLKLEEYEYTVIYKAGKTNCNADALSRNP---------VNYLVCPLEKRPRLPVRVSNLSDTSESEDEDDDTRRRKIPVRRQSS-ERVFCSTRPYV 422
[Close]
BLAST of SMED30005224 vs. TrEMBL
Match: V5I864 (Retrovirus-related Pol polyprotein from transposon 17.6 (Fragment) OS=Anoplophora glabripennis OX=217634 GN=POL3 PE=4 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.520e-32
Identity = 57/94 (60.64%), Postives = 73/94 (77.66%), Query Frame = -1 
Query:  202 IAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRI 483
            I YASR+L  H+ NYSTIEKE LA+V+ + NFR YL G KF+++TDH PLQWL  L+D +SKL+RW + L EYD+EIKY  G +N+ ADA+SRI
Sbjct:  552 ICYASRTLNQHEINYSTIEKELLAIVWSVQNFRPYLFGRKFIIYTDHRPLQWLFNLKDPSSKLVRWKLKLSEYDYEIKYKPGTTNKVADALSRI 645
[Close]
BLAST of SMED30005224 vs. TrEMBL
Match: A0A355ABF2 (Uncharacterized protein OS=Flavobacteriaceae bacterium OX=1871037 GN=DDZ39_05755 PE=4 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.495e-31
Identity = 63/116 (54.31%), Postives = 82/116 (70.69%), Query Frame = -1 
Query:  160 ECEKDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDNTVSSKI-NYD 504
            E  KDH+IAYASR LK H+ NYS IEKE LA+VY +  F  Y+   K +++TD  PLQWLM  +DS+S+LIRWS+ LQEYD +IKY  GK+N NAD +SR+ E    + S + N+D
Sbjct: 1665 EMLKDHVIAYASRILKSHEVNYSVIEKEALAIVYSVKQFHHYIWSRKIILYTDQRPLQWLMTHKDSSSRLIRWSLLLQEYDIDIKYRQGKANANADFLSRMDEPVQCMVSMLANFD 1780
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BLAST of SMED30005224 vs. TrEMBL
Match: A0A0B1PCW2 (RT_RNaseH domain-containing protein OS=Trichuris suis OX=68888 GN=D918_10120 PE=4 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.771e-31
Identity = 66/164 (40.24%), Postives = 98/164 (59.76%), Query Frame = -1 
Query:    7 EKDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDNTVSSKINYDDTIFMAIKMANNIENLQNDQEDNDELNQLRQHAVTIKKESDWEQVAKEKHK 498
            ++  ++AYASR+L+P +KNYS IEKE LA+V+    FR +L+G KF V TDH PLQWL   +    +L RW++ LQE+D  I Y  G+SN NADA+SR P +D T ++       + +  ++ N  ENL N Q  +  + ++ +  V+     D  Q A E+ K
Sbjct:   35 QEGRVVAYASRALRPAEKNYSVIEKECLAIVFATKKFRHFLLGSKFRVLTDHAPLQWLAA-QKMEGRLTRWAVMLQEFDMVIAYRPGQSNGNADALSRSPIQDQTAAA-------VGVWPELTN--ENLANAQRQDTTIRRVIEELVS---NDDGRQTATEEWK 185
[Close]
BLAST of SMED30005224 vs. TrEMBL
Match: V5GQE1 (Retrovirus-related Pol polyprotein from transposon 17.6 (Fragment) OS=Anoplophora glabripennis OX=217634 GN=POL3 PE=4 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.797e-31
Identity = 61/121 (50.41%), Postives = 81/121 (66.94%), Query Frame = -1 
Query:  151 EKDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRI-----PEEDNTVSSKINYDDTI 498
            + DH I+YASR+L P + NYSTIEKE LA+V+    FR Y+ G KF++ TDH PLQWL  L++  S+L+RW + L+EYD+EIKY  GK N NAD +SRI     P + N + +  N  D I
Sbjct:  580 QNDHPISYASRTLNPAEINYSTIEKELLAIVWACKYFRPYIFGRKFIIQTDHKPLQWLFNLKEPNSRLVRWRLKLEEYDYEIKYKKGKQNTNADCLSRIKIDSNPIDINPIDTDTNPGDKI 700
[Close]
BLAST of SMED30005224 vs. Ensembl Cavefish
Match: ENSAMXT00000041345.1 (pep primary_assembly:Astyanax_mexicanus-2.0:25:32334536:32339002:1 gene:ENSAMXG00000029230.1 transcript:ENSAMXT00000041345.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 100.523 bits (249), Expect = 8.276e-25
Identity = 46/99 (46.46%), Postives = 65/99 (65.66%), Query Frame = -1 
Query:  196 DHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPE 492
            +H++AYASR L+  ++NYST EKE LA+V+ +  +R YL G  F V TDH+ L W+       S+L RW+I LQ +DF ++Y  GK N   D +SRIP+
Sbjct:  947 EHVVAYASRLLQGAERNYSTAEKECLAVVWAVEKWRVYLEGRHFTVITDHSALSWVFNHPKPTSRLTRWAIRLQTFDFSVQYRKGKCNIVPDTLSRIPD 1045
[Close]
BLAST of SMED30005224 vs. Ensembl Cavefish
Match: ENSAMXT00000030446.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000181.1:474500:475675:-1 gene:ENSAMXG00000036877.1 transcript:ENSAMXT00000030446.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 98.9821 bits (245), Expect = 1.065e-24
Identity = 44/98 (44.90%), Postives = 64/98 (65.31%), Query Frame = -1 
Query:  199 DHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIP 492
            + +IAY SR L   ++NY    +E LA+V G+ +FR Y+ G  F++ TDH  LQWLM+ R+   +L RW   LQE+ FE+ +  G+S+ NADA+SR P
Sbjct:  183 ERVIAYYSRRLDKAERNYCVTRRELLAVVEGLKHFRPYVYGVPFLLRTDHASLQWLMRFREPEGQLARWISRLQEFSFEVVHRPGRSHGNADALSRRP 280
[Close]
BLAST of SMED30005224 vs. Ensembl Cavefish
Match: ENSAMXT00000055509.1 (pep primary_assembly:Astyanax_mexicanus-2.0:21:13332550:13338191:1 gene:ENSAMXG00000030987.1 transcript:ENSAMXT00000055509.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 97.8265 bits (242), Expect = 8.794e-24
Identity = 38/97 (39.18%), Postives = 67/97 (69.07%), Query Frame = -1 
Query:  205 KDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSR 495
            ++H I Y SR+L P +K Y+ +E+E LA+ + +   R +L G +F + TDH PLQW+ K +D+ +++ RW +ALQE+ F++++  G ++ +AD +SR
Sbjct: 1251 EEHPILYISRALNPAEKRYAALEREALAIKWAVEELRYFLTGRQFTLVTDHAPLQWVSKHKDTNARVTRWFLALQEFSFQVRHRPGVAHADADGLSR 1347
[Close]
BLAST of SMED30005224 vs. Ensembl Cavefish
Match: ENSAMXT00000038919.1 (pep primary_assembly:Astyanax_mexicanus-2.0:25:7611858:7613942:-1 gene:ENSAMXG00000031762.1 transcript:ENSAMXT00000038919.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 97.0561 bits (240), Expect = 1.351e-23
Identity = 44/100 (44.00%), Postives = 67/100 (67.00%), Query Frame = -1 
Query:  199 EKDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIP 498
            +++ ++AY SR L   ++NY T  +E LA+V   ++FRQYL+G  F V TDH+ L+WLM++++   +L RW   L EYDF++ +  G  + NADAMSR P
Sbjct:  156 DEERVLAYGSRRLSQTEQNYCTTRRELLAVVEFTSHFRQYLLGRTFTVRTDHSSLRWLMRMKEPEGQLARWLEKLGEYDFKVIHRPGAQHCNADAMSRRP 255
[Close]
BLAST of SMED30005224 vs. Ensembl Cavefish
Match: ENSAMXT00000044431.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000182.1:892613:897532:1 gene:ENSAMXG00000038169.1 transcript:ENSAMXT00000044431.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 96.2857 bits (238), Expect = 2.369e-23
Identity = 39/98 (39.80%), Postives = 65/98 (66.33%), Query Frame = -1 
Query:  199 DHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIP 492
            +H I + S+ L P ++ Y+ IE+E LA+ + +   R YL+G  F + TDH PLQWL   +D+ +K+ RW ++LQ+++F + +  G  + NADA+SR+P
Sbjct: 1089 EHPILFLSKKLNPTERRYAAIEREALAIKWALNELRFYLLGRPFTLVTDHAPLQWLANAKDTNAKITRWFLSLQDFNFSLLHRPGSLHGNADALSRLP 1186
[Close]
BLAST of SMED30005224 vs. Ensembl Medaka
Match: ENSORLT00000040657.1 (pep primary_assembly:ASM223467v1:20:11246761:11253480:-1 gene:ENSORLG00000026665.1 transcript:ENSORLT00000040657.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 100.523 bits (249), Expect = 8.548e-25
Identity = 43/99 (43.43%), Postives = 69/99 (69.70%), Query Frame = -1 
Query:  193 HIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEE 489
            H +AY SR L P + +YST+EKE LA+ + + +F+ YL+G +F + TDH  LQWL K++D+ +++ RW +A+Q Y +++ Y  G+ N  AD +SR P+E
Sbjct: 1370 HPVAYISRKLLPREIHYSTVEKEALAVKWAMDSFKYYLLGREFTLETDHRALQWLEKMKDTNARITRWYLAMQPYRYKVNYIPGRDNITADYLSRAPDE 1468
[Close]
BLAST of SMED30005224 vs. Ensembl Medaka
Match: ENSORLT00000027608.1 (pep primary_assembly:ASM223467v1:1:30064408:30068871:-1 gene:ENSORLG00000026546.1 transcript:ENSORLT00000027608.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 100.523 bits (249), Expect = 8.548e-25
Identity = 43/99 (43.43%), Postives = 69/99 (69.70%), Query Frame = -1 
Query:  193 HIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEE 489
            H +AY SR L P + +YST+EKE LA+ + + +F+ YL+G +F + TDH  LQWL K++D+ +++ RW +A+Q Y +++ Y  G+ N  AD +SR P+E
Sbjct: 1370 HPVAYISRKLLPREIHYSTVEKEALAVKWAMDSFKYYLLGREFTLETDHRALQWLEKMKDTNARITRWYLAMQPYRYKVNYIPGRDNITADYLSRAPDE 1468
[Close]
BLAST of SMED30005224 vs. Ensembl Medaka
Match: ENSORLT00000030791.1 (pep primary_assembly:ASM223467v1:19:17006293:17008599:1 gene:ENSORLG00000025478.1 transcript:ENSORLT00000030791.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 98.9821 bits (245), Expect = 2.575e-24
Identity = 45/102 (44.12%), Postives = 70/102 (68.63%), Query Frame = -1 
Query:  193 EKDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEE 498
            E+ H +AY SR L P +  YST+EKETLA+ + + + R YL+G +F++ TDH  LQWL K++DS  ++ RW +++Q + F I++  GK N  AD +SR P++
Sbjct:  650 EERHPVAYVSRKLLPREVRYSTVEKETLAIKWALDSLRYYLLGREFILETDHKALQWLNKMKDSNGRITRWYLSMQPFCFTIRHVPGKINCIADYLSRRPDQ 751
[Close]
BLAST of SMED30005224 vs. Ensembl Medaka
Match: ENSORLT00000041940.1 (pep primary_assembly:ASM223467v1:3:114973:116062:1 gene:ENSORLG00000022411.1 transcript:ENSORLT00000041940.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 97.4413 bits (241), Expect = 2.989e-24
Identity = 52/153 (33.99%), Postives = 83/153 (54.25%), Query Frame = -1 
Query:   67 EKDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPE-----EDNTVSSKINYDDTIFMAIK----MANNIENLQNDQEDNDELNQLRQ 498
            + + +IAYASR L+  +KNYST EKE LA+V+ +  +R YL G +F V+TDH  L W      ++S+L RW + LQ++ F++ Y  G  N   DA+SR+ E           S  N    + +A+K    +   +  +  +Q+ +  +  LRQ
Sbjct:  203 QGECVIAYASRVLRGPEKNYSTSEKECLAVVWAVEKWRHYLEGQEFTVYTDHAALSWAFNCPKTSSRLTRWILRLQQFCFKVHYRKGCLNTGPDALSRVVEPLVIRPGPQTYSHHNSAPCLKIAVKPFSDLPATLAEIAQEQDKDPVVRDLRQ 355
[Close]
BLAST of SMED30005224 vs. Ensembl Medaka
Match: ENSORLT00000040305.1 (pep primary_assembly:ASM223467v1:1:25459511:25466649:-1 gene:ENSORLG00000028409.1 transcript:ENSORLT00000040305.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 98.5969 bits (244), Expect = 4.227e-24
Identity = 44/99 (44.44%), Postives = 68/99 (68.69%), Query Frame = -1 
Query:  199 KDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIP 495
            ++ ++AY SR L   ++NY T  +E LA+V   ++FRQYL+G  FV+ TDH+ L+WL +L++   +L RW   L EYDF++ +  GK ++NADA+SR P
Sbjct: 1150 EERVLAYGSRRLTTTEQNYCTTRRELLAVVEFTSHFRQYLLGRSFVLRTDHSSLRWLTRLKEPEGQLARWLEKLAEYDFQVLHRPGKVHQNADALSRRP 1248
[Close]
BLAST of SMED30005224 vs. Planmine SMEST
Match: SMESG000056661.1 (SMESG000056661.1)

HSP 1 Score: 272.322 bits (695), Expect = 8.325e-85
Identity = 128/169 (75.74%), Postives = 149/169 (88.17%), Query Frame = -1 
Query:    1 LECEKDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDNTVSSKINYDDTIFMAIKMANNIENLQNDQEDNDELNQLRQHAVTIKKESDWEQVAKEKHKYV 507
            +E EKDH+IAYASR+LKPH+KNYSTIEK+TLALVYGI  FRQYLVG KFVVFTDHNPLQWLMK RDSASKLIRWSIALQEYDFEIKY TGKS  NAD +SRIP  + + +++ NY++TIFMAIK ANN++ LQ DQE++DELNQLR+HAVTIK ESDW+ V +EKHKY+
Sbjct: 1876 VEGEKDHVIAYASRTLKPHEKNYSTIEKKTLALVYGIATFRQYLVGRKFVVFTDHNPLQWLMKHRDSASKLIRWSIALQEYDFEIKYRTGKSKGNADTLSRIPVNNESKNNETNYNNTIFMAIKTANNLQELQKDQENDDELNQLRKHAVTIKMESDWKHVVEEKHKYI 2044
[Close]
BLAST of SMED30005224 vs. Planmine SMEST
Match: SMESG000056661.1 (SMESG000056661.1)

HSP 1 Score: 272.322 bits (695), Expect = 8.497e-85
Identity = 128/169 (75.74%), Postives = 149/169 (88.17%), Query Frame = -1 
Query:    1 LECEKDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDNTVSSKINYDDTIFMAIKMANNIENLQNDQEDNDELNQLRQHAVTIKKESDWEQVAKEKHKYV 507
            +E EKDH+IAYASR+LKPH+KNYSTIEK+TLALVYGI  FRQYLVG KFVVFTDHNPLQWLMK RDSASKLIRWSIALQEYDFEIKY TGKS  NAD +SRIP  + + +++ NY++TIFMAIK ANN++ LQ DQE++DELNQLR+HAVTIK ESDW+ V +EKHKY+
Sbjct: 1942 VEGEKDHVIAYASRTLKPHEKNYSTIEKKTLALVYGIATFRQYLVGRKFVVFTDHNPLQWLMKHRDSASKLIRWSIALQEYDFEIKYRTGKSKGNADTLSRIPVNNESKNNETNYNNTIFMAIKTANNLQELQKDQENDDELNQLRKHAVTIKMESDWKHVVEEKHKYI 2110
[Close]
BLAST of SMED30005224 vs. Planmine SMEST
Match: SMESG000056661.1 (SMESG000056661.1)

HSP 1 Score: 271.937 bits (694), Expect = 8.651e-85
Identity = 128/169 (75.74%), Postives = 149/169 (88.17%), Query Frame = -1 
Query:    1 LECEKDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDNTVSSKINYDDTIFMAIKMANNIENLQNDQEDNDELNQLRQHAVTIKKESDWEQVAKEKHKYV 507
            +E EKDH+IAYASR+LKPH+KNYSTIEK+TLALVYGI  FRQYLVG KFVVFTDHNPLQWLMK RDSASKLIRWSIALQEYDFEIKY TGKS  NAD +SRIP  + + +++ NY++TIFMAIK ANN++ LQ DQE++DELNQLR+HAVTIK ESDW+ V +EKHKY+
Sbjct: 1834 VEGEKDHVIAYASRTLKPHEKNYSTIEKKTLALVYGIATFRQYLVGRKFVVFTDHNPLQWLMKHRDSASKLIRWSIALQEYDFEIKYRTGKSKGNADTLSRIPVNNESKNNETNYNNTIFMAIKTANNLQELQKDQENDDELNQLRKHAVTIKMESDWKHVVEEKHKYI 2002
[Close]
BLAST of SMED30005224 vs. Planmine SMEST
Match: SMESG000056661.1 (SMESG000056661.1)

HSP 1 Score: 271.937 bits (694), Expect = 9.426e-85
Identity = 128/169 (75.74%), Postives = 149/169 (88.17%), Query Frame = -1 
Query:    1 LECEKDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDNTVSSKINYDDTIFMAIKMANNIENLQNDQEDNDELNQLRQHAVTIKKESDWEQVAKEKHKYV 507
            +E EKDH+IAYASR+LKPH+KNYSTIEK+TLALVYGI  FRQYLVG KFVVFTDHNPLQWLMK RDSASKLIRWSIALQEYDFEIKY TGKS  NAD +SRIP  + + +++ NY++TIFMAIK ANN++ LQ DQE++DELNQLR+HAVTIK ESDW+ V +EKHKY+
Sbjct: 1740 VEGEKDHVIAYASRTLKPHEKNYSTIEKKTLALVYGIATFRQYLVGRKFVVFTDHNPLQWLMKHRDSASKLIRWSIALQEYDFEIKYRTGKSKGNADTLSRIPVNNESKNNETNYNNTIFMAIKTANNLQELQKDQENDDELNQLRKHAVTIKMESDWKHVVEEKHKYI 1908
[Close]
BLAST of SMED30005224 vs. Planmine SMEST
Match: SMESG000057446.1 (SMESG000057446.1)

HSP 1 Score: 269.626 bits (688), Expect = 7.401e-84
Identity = 129/169 (76.33%), Postives = 148/169 (87.57%), Query Frame = -1 
Query:    1 LECEKDHIIAYASRSLKPHKKNYSTIEKETLALVYGITNFRQYLVG*KFVVFTDHNPLQWLMKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDNTVSSKINYDDTIFMAIKMANNIENLQNDQEDNDELNQLRQHAVTIKKESDWEQVAKEKHKYV 507
            +E EKDH+IAYASR+LKPH+KNYSTIEKETLALVYGI  FRQYLVG KFVV T HNPLQWLMK  DSASKLIRWSIALQEYDFEIKY TGKSN NAD +SRIP  +   ++++NY++TIFMAIK ANN++ LQ DQE++DELNQLR+HAVTIKKESDW+ VA EKHKY+
Sbjct: 2177 VEGEKDHVIAYASRTLKPHEKNYSTIEKETLALVYGIATFRQYLVGRKFVVLTYHNPLQWLMKHWDSASKLIRWSIALQEYDFEIKYRTGKSNGNADTLSRIPVNNERKNNEMNYNNTIFMAIKTANNLQELQKDQENDDELNQLRKHAVTIKKESDWKHVADEKHKYI 2345
The following BLAST results are available for this feature:
BLAST of SMED30005224 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005224 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005224 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005224 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
CR354395.21.372e-1326.32pep chromosome:GRCz11:12:13553730:13556536:-1 gene... [more]
CR749164.12.854e-1330.84pep chromosome:GRCz11:21:30355767:30361679:1 gene:... [more]
BX546500.13.501e-1331.20pep chromosome:GRCz11:23:12926092:12931693:-1 gene... [more]
BX571665.14.309e-1326.32pep chromosome:GRCz11:17:35431724:35437222:1 gene:... [more]
CR533578.34.311e-1326.32pep chromosome:GRCz11:16:23466094:23471387:-1 gene... [more]
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BLAST of SMED30005224 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSXETT00000024810.11.144e-2643.48pep primary_assembly:Xenopus_tropicalis_v9.1:KV464... [more]
anxa61.682e-2647.06annexin A6 [Source:Xenbase;Acc:XB-GENE-989741][more]
ENSXETT00000011934.12.471e-2238.14pep primary_assembly:Xenopus_tropicalis_v9.1:3:519... [more]
ENSXETT00000006041.13.237e-1537.37pep primary_assembly:Xenopus_tropicalis_v9.1:6:373... [more]
ENSXETT00000035618.11.689e-1437.14pep primary_assembly:Xenopus_tropicalis_v9.1:2:369... [more]
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BLAST of SMED30005224 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005224 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|P04323|POL3_DROME3.246e-2844.19Retrovirus-related Pol polyprotein from transposon... [more]
sp|P20825|POL2_DROME1.897e-2648.08Retrovirus-related Pol polyprotein from transposon... [more]
sp|Q8I7P9|POL5_DROME5.937e-2345.05Retrovirus-related Pol polyprotein from transposon... [more]
sp|P10394|POL4_DROME1.085e-1844.68Retrovirus-related Pol polyprotein from transposon... [more]
sp|P10401|POLY_DROME2.210e-1236.17Retrovirus-related Pol polyprotein from transposon... [more]
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BLAST of SMED30005224 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0J7KIE03.536e-3240.36Enzymatic polyprotein endonuclease reverse OS=Lasi... [more]
V5I8645.520e-3260.64Retrovirus-related Pol polyprotein from transposon... [more]
A0A355ABF21.495e-3154.31Uncharacterized protein OS=Flavobacteriaceae bacte... [more]
A0A0B1PCW24.771e-3140.24RT_RNaseH domain-containing protein OS=Trichuris s... [more]
V5GQE14.797e-3150.41Retrovirus-related Pol polyprotein from transposon... [more]
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BLAST of SMED30005224 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSAMXT00000041345.18.276e-2546.46pep primary_assembly:Astyanax_mexicanus-2.0:25:323... [more]
ENSAMXT00000030446.11.065e-2444.90pep primary_assembly:Astyanax_mexicanus-2.0:APWO02... [more]
ENSAMXT00000055509.18.794e-2439.18pep primary_assembly:Astyanax_mexicanus-2.0:21:133... [more]
ENSAMXT00000038919.11.351e-2344.00pep primary_assembly:Astyanax_mexicanus-2.0:25:761... [more]
ENSAMXT00000044431.12.369e-2339.80pep primary_assembly:Astyanax_mexicanus-2.0:APWO02... [more]
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BLAST of SMED30005224 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005224 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005224 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005224 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSORLT00000040657.18.548e-2543.43pep primary_assembly:ASM223467v1:20:11246761:11253... [more]
ENSORLT00000027608.18.548e-2543.43pep primary_assembly:ASM223467v1:1:30064408:300688... [more]
ENSORLT00000030791.12.575e-2444.12pep primary_assembly:ASM223467v1:19:17006293:17008... [more]
ENSORLT00000041940.12.989e-2433.99pep primary_assembly:ASM223467v1:3:114973:116062:1... [more]
ENSORLT00000040305.14.227e-2444.44pep primary_assembly:ASM223467v1:1:25459511:254666... [more]
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BLAST of SMED30005224 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000056661.18.325e-8575.74SMESG000056661.1[more]
SMESG000056661.18.497e-8575.74SMESG000056661.1[more]
SMESG000056661.18.651e-8575.74SMESG000056661.1[more]
SMESG000056661.19.426e-8575.74SMESG000056661.1[more]
SMESG000057446.17.401e-8476.33SMESG000057446.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30005224 ID=SMED30005224|Name=SMED30005224|organism=Schmidtea mediterranea sexual|type=transcript|length=507bp
TACGTATTTATGTTTTTCTTTGGCAACCTGCTCCCAGTCACTCTCTTTCT
TGATTGTGACCGCATGTTGACGTAATTGATTTAGTTCATCATTATCTTCT
TGATCATTTTGTAAGTTTTCGATATTATTTGCCATTTTAATAGCCATAAA
TATTGTATCATCGTAATTGATTTTACTTGAAACAGTATTATCTTCCTCGG
GTATTCTTGACATAGCGTCTGCATTCTCATTCGACTTTCCTGTATGGTAC
TTTATCTCGAAGTCATATTCTTGCAACGCGATCGACCATCTGATTAACTT
ACTAGCCGAATCCCTTAGCTTCATTAACCATTGTAACGGATTATGATCCG
TAAAGACGACAAATTTTCATCCAACTAAGTATTGTCGGAAATTAGTTATC
CCATAAACTAAAGCTAACGTCTCTTTTTCAATTGTTGAATAATTCTTTTT
ATGAGGTTTTAATGATCGACTGGCATAAGCAATAATATGATCTTTTTCAC
ATTCGAG
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protein sequence of SMED30005224-orf-1

>SMED30005224-orf-1 ID=SMED30005224-orf-1|Name=SMED30005224-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=108bp
MKLRDSASKLIRWSIALQEYDFEIKYHTGKSNENADAMSRIPEEDNTVSS
KINYDDTIFMAIKMANNIENLQNDQEDNDELNQLRQHAVTIKKESDWEQV
AKEKHKYV
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000101muscle cell