SMED30005212

Overview
NameSMED30005212
Smed IDSMED30005212
Length (bp)1260
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30005212 (SMED30005212) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30005212 (SMED30005212) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30005212 (SMED30005212) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30005212 (SMED30005212) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30005212

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30005212SMESG000042005.1 dd_Smed_v4_3333_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30005212SMESG000042005.1 dd_Smed_v4_3333_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
anterior sideSMED30005212SMESG000042005.1 dd_Smed_v4_3333_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30005212SMESG000042005.1 dd_Smed_v4_3333_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30005212SMESG000042005.1 Contig19942newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30005212SMESG000042005.1 Contig19942uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of SMED30005212 vs. TrEMBL
Match: K1P0G4 (Uncharacterized protein OS=Crassostrea gigas OX=29159 GN=CGI_10002070 PE=4 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.468e-10
Identity = 49/158 (31.01%), Postives = 76/158 (48.10%), Query Frame = 2
Query:  332 GLILVSARYRGTYYYSSDTSLDEISICYNESPLYGRN----ISKSPWFVCPWDD---PRFRYCCGNEIEERCCRYFDRPGHLTGLLIG---GLVMVFIFVLVCQCFCKKHKHKEKADIALVNV-DPDKIEIDYTNAIVYPPEPVLPTDGNACPPYPQS 772
            G +  ++RYR    Y +D +L E+  CYN+S  Y R+    +S    F CP D+     +RYCCG E ++ CC ++D+PGH+ G++ G   G+V +F+ V     + K  K +        N+ +       Y  A   P   +   D N   PYP S
Sbjct:  165 GTVYGASRYRSRARYIADGTLPEV--CYNDS--YNRSTNGTVSYQGRFFCPLDENMSEDYRYCCGEEGQQYCCTFWDKPGHIVGVVFGIIAGVVALFVVVFCVIKYMKTTKSRNHNRPYTSNISNTSNGHASYPPAYAPPTYEMSCVDSNGKTPYPTS 318          
BLAST of SMED30005212 vs. TrEMBL
Match: K1PDZ5 (Uncharacterized protein OS=Crassostrea gigas OX=29159 GN=CGI_10007565 PE=4 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 2.393e-7
Identity = 37/111 (33.33%), Postives = 55/111 (49.55%), Query Frame = 2
Query:  440 NISKSPWFVCPWDD---PRFRYCCGNEIEERCCRYFDRPGHLTGLLIG---GLVMVFIFVLVCQCFCKKHKHKEKADIALVNVDPDKIEIDYTNAIVYPPEPVLPTDGNAC 754
             +S    F CP D+     +RYCCG E ++ CC ++D+PGH+ G++ G   G+V +FI V  C   C + K     D A    +  K +      ++YPP    PT   AC
Sbjct:    6 TVSYQGRFFCPIDEYMSEDYRYCCGEEGQQNCCTFWDKPGHIVGVVFGIIAGMVALFIAVF-CVVKCIRTKKSRNCDYASTVSNASKEQ------VIYPPVYAPPTYEIAC 109          
BLAST of SMED30005212 vs. TrEMBL
Match: A0A1S3HM18 (uncharacterized protein LOC106155680 OS=Lingula unguis OX=7574 GN=LOC106155680 PE=4 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.139e-6
Identity = 33/114 (28.95%), Postives = 56/114 (49.12%), Query Frame = 2
Query:  314 RNGINSGLILVSARYRGTYYYSSDTSLDEISICYNESPLYGRNISKSPWFVCP-WDDP-RFRYCCGNEIEERCCRYFDRPGHLTGLLIGGLVMVFIFVLVCQCFCKKHKHKEKA 649
            +     G +   +RY+    Y  D    E + CYN +  +  N S    F+CP WD P    YCCG E+++ CC ++D  G + G++IG L+ V + +    C C + + +  +
Sbjct:   49 KTAAAVGTVYGLSRYQRRRRYKMDPDR-EPTRCYNSARRFQENGSLFNEFICPEWDQPDELEYCCGPELQQYCCGFWDDGGRVAGVVIGILIAVTLVIGCIACCCCQARKRRAS 161          
BLAST of SMED30005212 vs. Planmine SMEST
Match: SMESG000042005.1 (SMESG000042005.1)

HSP 1 Score: 507.294 bits (1305), Expect = 0.000e+0
Identity = 323/325 (99.38%), Postives = 325/325 (100.00%), Query Frame = 2
Query:   68 MLYXXXXXXXXXXXXXNCHTTWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIGXXXXXXXXXXXHGXXXXXXXXXXXXXXKRNGINSGLILVSARYRGTYYYSSDTSLDEISICYNESPLYGRNISKSPWFVCPWDDPRFRYCCGNEIEERCCRYFDRPGHLTGLLIGGLVMVFIFVLVCQCFCKKHKHKEKADIALVNVDPDKIEIDYTNAIVYPPEPVLPTDGNACPPYPQSFDLDKLPLCGQPDFSQTGITPNQTENQIPYVPQNTDNNGNPPYPLSPMDSVPQPYSGQQQYNSLSYDESGPQYSLIPPENPPPSYSDIMK 1042
            MLYLKIFWIFLFFFILNCHTTWSRGGRGGGSRGGSRSGSRSSGGFRSGTSGKIGSSSRYSMWSRSHGFSSSFRYRTSTYYYKRNGINSGLILVSARYRGTYYYSSDTSLDEISICYNESPLYGRNISKSPWFVCPWDDPRFRYCCGNEIEERCCRYFDRPGHLTGLLIGGLVMVFIFVLVCQCFCKKHKHKEKADIALVNVDPDKI+IDYTNAIVYPPEPVLPTDGNACPPYPQSFDLDKLPLCGQPDFSQTGITPNQTENQIPYVPQNTDNNGNPPYPLSPMDSVPQP+SGQQQYNSLSYDESGPQYSLIPPENPPPSYSDIMK
Sbjct:    1 MLYLKIFWIFLFFFILNCHTTWSRGGRGGGSRGGSRSGSRSSGGFRSGTSGKIGSSSRYSMWSRSHGFSSSFRYRTSTYYYKRNGINSGLILVSARYRGTYYYSSDTSLDEISICYNESPLYGRNISKSPWFVCPWDDPRFRYCCGNEIEERCCRYFDRPGHLTGLLIGGLVMVFIFVLVCQCFCKKHKHKEKADIALVNVDPDKIDIDYTNAIVYPPEPVLPTDGNACPPYPQSFDLDKLPLCGQPDFSQTGITPNQTENQIPYVPQNTDNNGNPPYPLSPMDSVPQPHSGQQQYNSLSYDESGPQYSLIPPENPPPSYSDIMK 325          
BLAST of SMED30005212 vs. Planmine SMEST
Match: SMESG000042003.1 (SMESG000042003.1)

HSP 1 Score: 155.221 bits (391), Expect = 1.074e-43
Identity = 101/242 (41.74%), Postives = 133/242 (54.96%), Query Frame = 2
Query:  317 NGINSGLILVSARYRGTYYYSSDTSLDEISICYNESPLYGRNISKSPWFVCPWDDPRFRYCCGNEIEERCCRYFDRPGHLTGLLIGGLVM-VFIFVLVCQCFCK-KHKHKEKADIALVNVDPDKIEIDYTNAIVYPPEPVLPTDGNACPPYPQSFDLDKLPLCGQPDFSQTGITPNQTENQIPYVPQNTDNNGNPPYPLSPMDSVPQPYSGQQQYNSLSYDESGPQYSLIPPENPPPSYSDI 1036
             GI +GLI++S   R T+    + S ++ISICYNE PLY RN+S SPWFVCPW DPR+RYCCG+EIEERCCRYFDRPGHL GL+IG +++   I++ +  C    KH  +  + +   +  P   ++D  N I+Y       T+  +  PYP   DL    +  QP+F            Q P  PQN  +           D V QP      Y S   DES   + L+ PENPPPSYS+I
Sbjct:   98 TGIITGLIIMSDYQRRTFADQYNKSYNDISICYNEFPLYDRNVSISPWFVCPWKDPRYRYCCGDEIEERCCRYFDRPGHLAGLIIGVIILCALIYIAIKYCHVMIKHCRRSCSKVVYKHDSPKNAKLD-NNPIIY-------TENVSNLPYPTYNDLS---MEYQPEFPP----------QYPVDPQNPGS-----------DYVEQP---MPTYVS---DESNQHFPLLSPENPPPSYSEI 301          
BLAST of SMED30005212 vs. Planmine SMEST
Match: SMESG000042003.1 (SMESG000042003.1)

HSP 1 Score: 154.836 bits (390), Expect = 1.215e-43
Identity = 99/241 (41.08%), Postives = 132/241 (54.77%), Query Frame = 2
Query:  320 GINSGLILVSARYRGTYYYSSDTSLDEISICYNESPLYGRNISKSPWFVCPWDDPRFRYCCGNEIEERCCRYFDRPGHLTGLLIGGLVM-VFIFVLVCQCFCK-KHKHKEKADIALVNVDPDKIEIDYTNAIVYPPEPVLPTDGNACPPYPQSFDLDKLPLCGQPDFSQTGITPNQTENQIPYVPQNTDNNGNPPYPLSPMDSVPQPYSGQQQYNSLSYDESGPQYSLIPPENPPPSYSDI 1036
            GI +GLI++S   R T+    + S ++ISICYNE PLY RN+S SPWFVCPW DPR+RYCCG+EIEERCCRYFDRPGHL GL+IG +++   I++ +  C    KH  +  + +   +  P   ++D  N I+Y       T+  +  PYP   DL    +  QP+F            Q P  PQN  +           D V QP        +   DES   + L+ PENPPPSYS+I
Sbjct:   96 GIITGLIIMSDYQRRTFADQYNKSYNDISICYNEFPLYDRNVSISPWFVCPWKDPRYRYCCGDEIEERCCRYFDRPGHLAGLIIGVIILCALIYIAIKYCHVMIKHCRRSCSKVVYKHDSPKNAKLD-NNPIIY-------TENVSNLPYPTYNDLS---MEYQPEFPP----------QYPVDPQNPGS-----------DYVEQPMP------TYVSDESNQHFPLLSPENPPPSYSEI 298          
BLAST of SMED30005212 vs. Planmine SMEST
Match: SMESG000042003.1 (SMESG000042003.1)

HSP 1 Score: 144.05 bits (362), Expect = 1.219e-39
Identity = 96/242 (39.67%), Postives = 125/242 (51.65%), Query Frame = 2
Query:  317 NGINSGLILVSARYRGTYYYSSDTSLDEISICYNESPLYGRNISKSPWFVCPWDDPRFRYCCGNEIEERCCRYFDRPGHLTGLLIGGLVM-VFIFVLVCQCFCK-KHKHKEKADIALVNVDPDKIEIDYTNAIVYPPEPVLPTDGNACPPYPQSFDLDKLPLCGQPDFSQTGITPNQTENQIPYVPQNTDNNGNPPYPLSPMDSVPQPYSGQQQYNSLSYDESGPQYSLIPPENPPPSYSDI 1036
             GI +GLI++S   R T+    + S ++ISICYNE PLY RN+S SPWFVCPW DPR+RYCCG+EIEERCCRYFDRPGHL GL+IG +++   I++ +  C    KH  +  + +   +  P                     +  +  PYP   DL    +  QP+F            Q P  PQN  +           D V QP      Y S   DES   + L+ PENPPPSYS+I
Sbjct:   95 TGIITGLIIMSDYQRRTFADQYNKSYNDISICYNEFPLYDRNVSISPWFVCPWKDPRYRYCCGDEIEERCCRYFDRPGHLAGLIIGVIILCALIYIAIKYCHVMIKHCRRSCSKVVYKHDSPK-------------------NENVSNLPYPTYNDLS---MEYQPEFPP----------QYPVDPQNPGS-----------DYVEQP---MPTYVS---DESNQHFPLLSPENPPPSYSEI 287          
BLAST of SMED30005212 vs. Planmine SMEST
Match: SMESG000042003.1 (SMESG000042003.1)

HSP 1 Score: 144.05 bits (362), Expect = 1.298e-39
Identity = 96/242 (39.67%), Postives = 125/242 (51.65%), Query Frame = 2
Query:  317 NGINSGLILVSARYRGTYYYSSDTSLDEISICYNESPLYGRNISKSPWFVCPWDDPRFRYCCGNEIEERCCRYFDRPGHLTGLLIGGLVM-VFIFVLVCQCFCK-KHKHKEKADIALVNVDPDKIEIDYTNAIVYPPEPVLPTDGNACPPYPQSFDLDKLPLCGQPDFSQTGITPNQTENQIPYVPQNTDNNGNPPYPLSPMDSVPQPYSGQQQYNSLSYDESGPQYSLIPPENPPPSYSDI 1036
             GI +GLI++S   R T+    + S ++ISICYNE PLY RN+S SPWFVCPW DPR+RYCCG+EIEERCCRYFDRPGHL GL+IG +++   I++ +  C    KH  +  + +   +  P                     +  +  PYP   DL    +  QP+F            Q P  PQN  +           D V QP      Y S   DES   + L+ PENPPPSYS+I
Sbjct:   98 TGIITGLIIMSDYQRRTFADQYNKSYNDISICYNEFPLYDRNVSISPWFVCPWKDPRYRYCCGDEIEERCCRYFDRPGHLAGLIIGVIILCALIYIAIKYCHVMIKHCRRSCSKVVYKHDSPK-------------------NENVSNLPYPTYNDLS---MEYQPEFPP----------QYPVDPQNPGS-----------DYVEQP---MPTYVS---DESNQHFPLLSPENPPPSYSEI 290          
The following BLAST results are available for this feature:
BLAST of SMED30005212 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005212 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005212 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005212 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005212 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005212 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005212 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005212 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
K1P0G48.468e-1031.01Uncharacterized protein OS=Crassostrea gigas OX=29... [more]
K1PDZ52.393e-733.33Uncharacterized protein OS=Crassostrea gigas OX=29... [more]
A0A1S3HM181.139e-628.95uncharacterized protein LOC106155680 OS=Lingula un... [more]
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BLAST of SMED30005212 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005212 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005212 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005212 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005212 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005212 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000042005.10.000e+099.38SMESG000042005.1[more]
SMESG000042003.11.074e-4341.74SMESG000042003.1[more]
SMESG000042003.11.215e-4341.08SMESG000042003.1[more]
SMESG000042003.11.219e-3939.67SMESG000042003.1[more]
SMESG000042003.11.298e-3939.67SMESG000042003.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30005212 ID=SMED30005212|Name=SMED30005212|organism=Schmidtea mediterranea sexual|type=transcript|length=1260bp
TGACATATTAATAATTAATACAAATATATTTTAAAAGTATTGTAAAAGTT
TTGAAAATTGTGCAATAATGTTATATTTAAAAATTTTTTGGATATTTTTA
TTTTTTTTTATTCTCAACTGTCATACGACATGGTCTCGAGGAGGTCGTGG
AGGTGGATCACGTGGTGGATCTCGTAGTGGATCACGTTCTAGTGGTGGAT
TTCGTAGTGGAACAAGTGGTAAAATCGGTAGTTCATCAAGATACTCTATG
TGGAGTAGGAGCCATGGATTTAGTTCTAGTTTTCGTTATCGAACTAGTAC
ATATTATTATAAAAGAAATGGCATAAACTCCGGGTTAATTCTTGTATCTG
CTCGGTACAGAGGAACATATTATTATAGCAGTGATACTTCATTGGATGAA
ATTTCTATTTGTTATAACGAATCCCCTTTATATGGTCGTAATATCTCCAA
ATCTCCTTGGTTTGTGTGCCCGTGGGATGACCCAAGATTTCGATACTGTT
GTGGGAATGAAATTGAAGAGCGATGTTGTCGATATTTTGACAGACCTGGA
CATTTAACAGGATTACTTATTGGAGGTTTGGTTATGGTATTTATTTTCGT
TCTTGTTTGCCAGTGTTTCTGTAAGAAACATAAGCATAAGGAGAAAGCTG
ATATTGCATTAGTCAATGTTGATCCTGATAAAATAGAGATTGATTATACA
AATGCGATCGTTTATCCCCCGGAACCAGTTTTACCTACAGATGGAAACGC
TTGTCCACCATATCCCCAGTCATTTGATTTGGATAAATTGCCTCTTTGTG
GCCAACCGGATTTCTCTCAAACAGGAATTACTCCCAATCAAACTGAAAAC
CAGATTCCATATGTTCCACAAAACACTGATAATAATGGAAATCCCCCATA
TCCATTAAGTCCAATGGACTCAGTTCCTCAACCATATTCAGGGCAACAGC
AATATAACTCTTTATCATATGATGAATCGGGGCCCCAATATTCTCTGATA
CCTCCAGAAAATCCTCCTCCATCATATTCAGATATTATGAAACAACAATA
GCAACAGAATTCTGAACAGAAATAAAAGTGTTTACATTATATATTTTAAC
TCATAATCATGAATCTACGTCTTTTTCATTTTATTGTTATTTATTTCGCA
TTATTTTTATTCGTTTATTCTAACAATGATATATATTGTATTCACTCTAA
TTATTGCTTGTTTGTAATGTTAGATTGTATTATTACAAAATAATTAATCG
AGAGATTCGG
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protein sequence of SMED30005212-orf-1

>SMED30005212-orf-1 ID=SMED30005212-orf-1|Name=SMED30005212-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=328bp
MLYLKIFWIFLFFFILNCHTTWSRGGRGGGSRGGSRSGSRSSGGFRSGTS
GKIGSSSRYSMWSRSHGFSSSFRYRTSTYYYKRNGINSGLILVSARYRGT
YYYSSDTSLDEISICYNESPLYGRNISKSPWFVCPWDDPRFRYCCGNEIE
ERCCRYFDRPGHLTGLLIGGLVMVFIFVLVCQCFCKKHKHKEKADIALVN
VDPDKIEIDYTNAIVYPPEPVLPTDGNACPPYPQSFDLDKLPLCGQPDFS
QTGITPNQTENQIPYVPQNTDNNGNPPYPLSPMDSVPQPYSGQQQYNSLS
YDESGPQYSLIPPENPPPSYSDIMKQQ*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000101muscle cell
PLANA:0000140anterior region of the whole animal
PLANA:0003116parenchymal cell
Vocabulary: INTERPRO
TermDefinition
IPR002861Reeler_dom
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..52
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 286..305
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..52
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 278..327
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..23
score: 0.874
NoneNo IPR availableTMHMMTMhelixcoord: 162..184