ATRX chromatin remodeler

Overview
NameATRX chromatin remodeler
Smed IDSMED30005198
Length (bp)1662
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of ATRX chromatin remodeler (SMED30005198) t-SNE clustered cells

Violin plots show distribution of expression levels for ATRX chromatin remodeler (SMED30005198) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of ATRX chromatin remodeler (SMED30005198) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for ATRX chromatin remodeler (SMED30005198) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30005198

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30005198SMESG000065439.1 SmedASXL_015797SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30005198SMESG000065439.1 SmedASXL_015797SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of ATRX chromatin remodeler vs. Ensembl Human
Match: ATRX (ATRX chromatin remodeler [Source:HGNC Symbol;Acc:HGNC:886])

HSP 1 Score: 53.5286 bits (127), Expect = 8.482e-7
Identity = 30/98 (30.61%), Postives = 50/98 (51.02%), Query Frame = 1 
Query:  103 CTICYKI-----TEDIYQHALLKVIICKDCF--VVVDPILNEPEVTN--CIWCTQNKETLQCARCNYKCCYDCINSNLGVSYINCVNEKN--WLCFVC 363
            CT C +       + IY+H  L+V+ICK+CF   + D I  + +  +  C WC +    + C  C+   C  CI  NLG   ++ + ++N  W C++C
Sbjct:  171 CTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYIC 268
[Close]
BLAST of ATRX chromatin remodeler vs. Ensembl Human
Match: ATRX (ATRX chromatin remodeler [Source:HGNC Symbol;Acc:HGNC:886])

HSP 1 Score: 53.9138 bits (128), Expect = 9.381e-7
Identity = 30/98 (30.61%), Postives = 50/98 (51.02%), Query Frame = 1 
Query:  103 CTICYKIT-----EDIYQHALLKVIICKDCF--VVVDPILNEPEVTN--CIWCTQNKETLQCARCNYKCCYDCINSNLGVSYINCVNEKN--WLCFVC 363
            CT C +       + IY+H  L+V+ICK+CF   + D I  + +  +  C WC +    + C  C+   C  CI  NLG   ++ + ++N  W C++C
Sbjct:  133 CTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYIC 230
[Close]
BLAST of ATRX chromatin remodeler vs. Ensembl Human
Match: ATRX (ATRX chromatin remodeler [Source:HGNC Symbol;Acc:HGNC:886])

HSP 1 Score: 53.5286 bits (127), Expect = 9.634e-7
Identity = 30/98 (30.61%), Postives = 50/98 (51.02%), Query Frame = 1 
Query:  103 CTICYKI-----TEDIYQHALLKVIICKDCF--VVVDPILNEPEVTN--CIWCTQNKETLQCARCNYKCCYDCINSNLGVSYINCVNEKN--WLCFVC 363
            CT C +       + IY+H  L+V+ICK+CF   + D I  + +  +  C WC +    + C  C+   C  CI  NLG   ++ + ++N  W C++C
Sbjct:  132 CTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYIC 229
[Close]
BLAST of ATRX chromatin remodeler vs. Ensembl Human
Match: ATRX (ATRX chromatin remodeler [Source:HGNC Symbol;Acc:HGNC:886])

HSP 1 Score: 53.9138 bits (128), Expect = 9.720e-7
Identity = 30/98 (30.61%), Postives = 50/98 (51.02%), Query Frame = 1 
Query:  103 CTICYKIT-----EDIYQHALLKVIICKDCF--VVVDPILNEPEVTN--CIWCTQNKETLQCARCNYKCCYDCINSNLGVSYINCVNEKN--WLCFVC 363
            CT C +       + IY+H  L+V+ICK+CF   + D I  + +  +  C WC +    + C  C+   C  CI  NLG   ++ + ++N  W C++C
Sbjct:  171 CTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYIC 268
[Close]
BLAST of ATRX chromatin remodeler vs. Ensembl Human
Match: ATRX (ATRX chromatin remodeler [Source:HGNC Symbol;Acc:HGNC:886])

HSP 1 Score: 53.1434 bits (126), Expect = 1.035e-6
Identity = 30/98 (30.61%), Postives = 50/98 (51.02%), Query Frame = 1 
Query:  103 CTICYKIT-----EDIYQHALLKVIICKDCF--VVVDPILNEPEVTN--CIWCTQNKETLQCARCNYKCCYDCINSNLGVSYINCVNEKN--WLCFVC 363
            CT C +       + IY+H  L+V+ICK+CF   + D I  + +  +  C WC +    + C  C+   C  CI  NLG   ++ + ++N  W C++C
Sbjct:  116 CTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYIC 213
[Close]
BLAST of ATRX chromatin remodeler vs. Ensembl Zebrafish
Match: AL935333.4 (pep chromosome:GRCz11:CHR_ALT_CTG5_1_13:23024946:23062717:1 gene:ENSDARG00000113999.1 transcript:ENSDART00000182257.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AL935333.4)

HSP 1 Score: 60.077 bits (144), Expect = 6.757e-9
Identity = 28/85 (32.94%), Postives = 45/85 (52.94%), Query Frame = 1 
Query:  127 EDIYQHALLKVIICKDCF--VVVDPILNEPEVTN--CIWCTQNKETLQCARCNYKCCYDCINSNLGVSYINCV--NEKNWLCFVC 363
            + +Y+H +LKV+ICK CF   + D I  + E  +  C WC +    + C  C+   C  C+  NLG   ++ +   E+ W C+VC
Sbjct:  182 DSVYRHPMLKVLICKSCFKYYMSDDISKDSEGMDEQCRWCAEGGSLIGCDYCSNAFCKKCVLRNLGRKELSTILEEERKWYCYVC 266
[Close]
BLAST of ATRX chromatin remodeler vs. Ensembl Zebrafish
Match: atrxl (ATRX chromatin remodeler, like [Source:ZFIN;Acc:ZDB-GENE-030131-2019])

HSP 1 Score: 59.6918 bits (143), Expect = 7.564e-9
Identity = 28/85 (32.94%), Postives = 45/85 (52.94%), Query Frame = 1 
Query:  127 EDIYQHALLKVIICKDCF--VVVDPILNEPEVTN--CIWCTQNKETLQCARCNYKCCYDCINSNLGVSYINCV--NEKNWLCFVC 363
            + +Y+H +LKV+ICK CF   + D I  + E  +  C WC +    + C  C+   C  C+  NLG   ++ +   E+ W C+VC
Sbjct:  182 DSVYRHPMLKVLICKSCFKYYMSDDISKDSEGMDEQCRWCAEGGSLIGCDYCSNAFCKKCVLRNLGRKELSTILEEERKWYCYVC 266
[Close]
BLAST of ATRX chromatin remodeler vs. Ensembl Zebrafish
Match: atrx (ATRX chromatin remodeler [Source:ZFIN;Acc:ZDB-GENE-030912-11])

HSP 1 Score: 51.9878 bits (123), Expect = 1.575e-6
Identity = 30/98 (30.61%), Postives = 46/98 (46.94%), Query Frame = 1 
Query:  103 CTICYKI-----TEDIYQHALLKVIICKDCF--VVVDPILNEPEVTN--CIWCTQNKETLQCARCNYKCCYDCINSNLGVSYINCV--NEKNWLCFVC 363
            CT C +       + I+QH  L V+ICK CF   + D I  + E  +  C WC +    + C  C+   C  CI  NLG   ++ +   +  W C++C
Sbjct:  102 CTACGQQVNHFQKDSIFQHPALHVLICKSCFKYYMSDDISKDDEGMDEQCRWCAEGGNLMCCDYCSNAFCKKCILRNLGRKELSEIMSEQSKWHCYIC 199
[Close]
BLAST of ATRX chromatin remodeler vs. Ensembl Zebrafish
Match: atrx (ATRX chromatin remodeler [Source:ZFIN;Acc:ZDB-GENE-030912-11])

HSP 1 Score: 52.373 bits (124), Expect = 1.688e-6
Identity = 30/98 (30.61%), Postives = 46/98 (46.94%), Query Frame = 1 
Query:  103 CTICYKIT-----EDIYQHALLKVIICKDCF--VVVDPILNEPEVTN--CIWCTQNKETLQCARCNYKCCYDCINSNLGVSYINCV--NEKNWLCFVC 363
            CT C +       + I+QH  L V+ICK CF   + D I  + E  +  C WC +    + C  C+   C  CI  NLG   ++ +   +  W C++C
Sbjct:  122 CTACGQQVNHFQKDSIFQHPALHVLICKSCFKYYMSDDISKDDEGMDEQCRWCAEGGNLMCCDYCSNAFCKKCILRNLGRKELSEIMSEQSKWHCYIC 219
[Close]
BLAST of ATRX chromatin remodeler vs. Ensembl Zebrafish
Match: atrx (ATRX chromatin remodeler [Source:ZFIN;Acc:ZDB-GENE-030912-11])

HSP 1 Score: 52.373 bits (124), Expect = 1.732e-6
Identity = 30/98 (30.61%), Postives = 46/98 (46.94%), Query Frame = 1 
Query:  103 CTICYKIT-----EDIYQHALLKVIICKDCF--VVVDPILNEPEVTN--CIWCTQNKETLQCARCNYKCCYDCINSNLGVSYINCV--NEKNWLCFVC 363
            CT C +       + I+QH  L V+ICK CF   + D I  + E  +  C WC +    + C  C+   C  CI  NLG   ++ +   +  W C++C
Sbjct:  122 CTACGQQVNHFQKDSIFQHPALHVLICKSCFKYYMSDDISKDDEGMDEQCRWCAEGGNLMCCDYCSNAFCKKCILRNLGRKELSEIMSEQSKWHCYIC 219
[Close]
BLAST of ATRX chromatin remodeler vs. Ensembl Xenopus
Match: ATRX (alpha thalassemia/mental retardation syndrome X-linked [Source:NCBI gene;Acc:100380046])

HSP 1 Score: 53.1434 bits (126), Expect = 1.293e-6
Identity = 30/98 (30.61%), Postives = 47/98 (47.96%), Query Frame = 1 
Query:  103 CTICYKIT-----EDIYQHALLKVIICKDCF--VVVDPILNEPEVTN--CIWCTQNKETLQCARCNYKCCYDCINSNLGVSYINCV--NEKNWLCFVC 363
            CT C +       + IY+H  LKV+ICK C+   + D I  + +  +  C WC +    + C  C+   C  CI  NLG   ++ +   E  W C++C
Sbjct:  147 CTACGQQVNHFQKDSIYRHPALKVLICKACYKYYMSDDINRDADGMDEQCRWCAEGGNLICCDYCHNAFCKKCILRNLGRKELSAIMDEEMKWECYIC 244
[Close]
BLAST of ATRX chromatin remodeler vs. Ensembl Xenopus
Match: ATRX (alpha thalassemia/mental retardation syndrome X-linked [Source:NCBI gene;Acc:100380046])

HSP 1 Score: 53.1434 bits (126), Expect = 1.305e-6
Identity = 30/98 (30.61%), Postives = 47/98 (47.96%), Query Frame = 1 
Query:  103 CTICYKIT-----EDIYQHALLKVIICKDCF--VVVDPILNEPEVTN--CIWCTQNKETLQCARCNYKCCYDCINSNLGVSYINCV--NEKNWLCFVC 363
            CT C +       + IY+H  LKV+ICK C+   + D I  + +  +  C WC +    + C  C+   C  CI  NLG   ++ +   E  W C++C
Sbjct:  170 CTACGQQVNHFQKDSIYRHPALKVLICKACYKYYMSDDINRDADGMDEQCRWCAEGGNLICCDYCHNAFCKKCILRNLGRKELSAIMDEEMKWECYIC 267
[Close]
BLAST of ATRX chromatin remodeler vs. Ensembl Xenopus
Match: ATRX (alpha thalassemia/mental retardation syndrome X-linked [Source:NCBI gene;Acc:100380046])

HSP 1 Score: 53.1434 bits (126), Expect = 1.452e-6
Identity = 30/98 (30.61%), Postives = 47/98 (47.96%), Query Frame = 1 
Query:  103 CTICYKIT-----EDIYQHALLKVIICKDCF--VVVDPILNEPEVTN--CIWCTQNKETLQCARCNYKCCYDCINSNLGVSYINCV--NEKNWLCFVC 363
            CT C +       + IY+H  LKV+ICK C+   + D I  + +  +  C WC +    + C  C+   C  CI  NLG   ++ +   E  W C++C
Sbjct:  128 CTACGQQVNHFQKDSIYRHPALKVLICKACYKYYMSDDINRDADGMDEQCRWCAEGGNLICCDYCHNAFCKKCILRNLGRKELSAIMDEEMKWECYIC 225
[Close]
BLAST of ATRX chromatin remodeler vs. Ensembl Xenopus
Match: ATRX (alpha thalassemia/mental retardation syndrome X-linked [Source:NCBI gene;Acc:100380046])

HSP 1 Score: 52.7582 bits (125), Expect = 1.574e-6
Identity = 30/98 (30.61%), Postives = 47/98 (47.96%), Query Frame = 1 
Query:  103 CTICYKIT-----EDIYQHALLKVIICKDCF--VVVDPILNEPEVTN--CIWCTQNKETLQCARCNYKCCYDCINSNLGVSYINCV--NEKNWLCFVC 363
            CT C +       + IY+H  LKV+ICK C+   + D I  + +  +  C WC +    + C  C+   C  CI  NLG   ++ +   E  W C++C
Sbjct:  150 CTACGQQVNHFQKDSIYRHPALKVLICKACYKYYMSDDINRDADGMDEQCRWCAEGGNLICCDYCHNAFCKKCILRNLGRKELSAIMDEEMKWECYIC 247
[Close]
BLAST of ATRX chromatin remodeler vs. Ensembl Xenopus
Match: ATRX (alpha thalassemia/mental retardation syndrome X-linked [Source:NCBI gene;Acc:100380046])

HSP 1 Score: 52.7582 bits (125), Expect = 1.591e-6
Identity = 30/98 (30.61%), Postives = 47/98 (47.96%), Query Frame = 1 
Query:  103 CTICYKIT-----EDIYQHALLKVIICKDCF--VVVDPILNEPEVTN--CIWCTQNKETLQCARCNYKCCYDCINSNLGVSYINCV--NEKNWLCFVC 363
            CT C +       + IY+H  LKV+ICK C+   + D I  + +  +  C WC +    + C  C+   C  CI  NLG   ++ +   E  W C++C
Sbjct:  150 CTACGQQVNHFQKDSIYRHPALKVLICKACYKYYMSDDINRDADGMDEQCRWCAEGGNLICCDYCHNAFCKKCILRNLGRKELSAIMDEEMKWECYIC 247
[Close]
BLAST of ATRX chromatin remodeler vs. Ensembl Mouse
Match: Atrx (ATRX, chromatin remodeler [Source:MGI Symbol;Acc:MGI:103067])

HSP 1 Score: 55.4546 bits (132), Expect = 1.800e-7
Identity = 31/99 (31.31%), Postives = 51/99 (51.52%), Query Frame = 1 
Query:  103 CTICYKI-----TEDIYQHALLKVIICKDCF--VVVDPILNEPEVTN--CIWCTQNKETLQCARCNYKCCYDCINSNLGVSYINCVNEKN--WLCFVCE 366
            CT C +       + IY+H  LKV+ICK+CF   + D I  + +  +  C WC +    + C  C+   C  CI  NLG   ++ + ++N  W C++C+
Sbjct:  131 CTACGQQVNHFQKDSIYRHPSLKVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICQ 229
[Close]
BLAST of ATRX chromatin remodeler vs. Ensembl Mouse
Match: Atrx (ATRX, chromatin remodeler [Source:MGI Symbol;Acc:MGI:103067])

HSP 1 Score: 55.4546 bits (132), Expect = 1.883e-7
Identity = 31/99 (31.31%), Postives = 51/99 (51.52%), Query Frame = 1 
Query:  103 CTICYKIT-----EDIYQHALLKVIICKDCF--VVVDPILNEPEVTN--CIWCTQNKETLQCARCNYKCCYDCINSNLGVSYINCVNEKN--WLCFVCE 366
            CT C +       + IY+H  LKV+ICK+CF   + D I  + +  +  C WC +    + C  C+   C  CI  NLG   ++ + ++N  W C++C+
Sbjct:  170 CTACGQQVNHFQKDSIYRHPSLKVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICQ 268
[Close]
BLAST of ATRX chromatin remodeler vs. Ensembl Mouse
Match: Atrx (ATRX, chromatin remodeler [Source:MGI Symbol;Acc:MGI:103067])

HSP 1 Score: 54.6842 bits (130), Expect = 2.032e-7
Identity = 31/99 (31.31%), Postives = 51/99 (51.52%), Query Frame = 1 
Query:  103 CTICYKIT-----EDIYQHALLKVIICKDCF--VVVDPILNEPEVTN--CIWCTQNKETLQCARCNYKCCYDCINSNLGVSYINCVNEKN--WLCFVCE 366
            CT C +       + IY+H  LKV+ICK+CF   + D I  + +  +  C WC +    + C  C+   C  CI  NLG   ++ + ++N  W C++C+
Sbjct:  115 CTACGQQVNHFQKDSIYRHPSLKVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICQ 213
[Close]
BLAST of ATRX chromatin remodeler vs. Ensembl Mouse
Match: Atrx (ATRX, chromatin remodeler [Source:MGI Symbol;Acc:MGI:103067])

HSP 1 Score: 53.1434 bits (126), Expect = 4.782e-7
Identity = 31/99 (31.31%), Postives = 51/99 (51.52%), Query Frame = 1 
Query:  103 CTICYKIT-----EDIYQHALLKVIICKDCF--VVVDPILNEPEVTN--CIWCTQNKETLQCARCNYKCCYDCINSNLGVSYINCVNEKN--WLCFVCE 366
            CT C +       + IY+H  LKV+ICK+CF   + D I  + +  +  C WC +    + C  C+   C  CI  NLG   ++ + ++N  W C++C+
Sbjct:  131 CTACGQQVNHFQKDSIYRHPSLKVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICQ 229
[Close]
BLAST of ATRX chromatin remodeler vs. Ensembl Mouse
Match: Atrx (ATRX, chromatin remodeler [Source:MGI Symbol;Acc:MGI:103067])

HSP 1 Score: 52.7582 bits (125), Expect = 6.579e-7
Identity = 31/99 (31.31%), Postives = 51/99 (51.52%), Query Frame = 1 
Query:  103 CTICYKIT-----EDIYQHALLKVIICKDCF--VVVDPILNEPEVTN--CIWCTQNKETLQCARCNYKCCYDCINSNLGVSYINCVNEKN--WLCFVCE 366
            CT C +       + IY+H  LKV+ICK+CF   + D I  + +  +  C WC +    + C  C+   C  CI  NLG   ++ + ++N  W C++C+
Sbjct:   93 CTACGQQVNHFQKDSIYRHPSLKVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICQ 191
[Close]
BLAST of ATRX chromatin remodeler vs. UniProt/SwissProt
Match: sp|F4HW51|CHR20_ARATH (Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana OX=3702 GN=ATRX PE=2 SV=2)

HSP 1 Score: 60.8474 bits (146), Expect = 2.966e-8
Identity = 31/111 (27.93%), Postives = 55/111 (49.55%), Query Frame = 1 
Query:   82 NNFISSKCTICYKITEDIYQHALLKVIICKDCFVVVDPILNEPEVT---NCIWCTQNKETLQCARCNYKCCYDCINSNLGVSYINCVNEKNWLCFVCESMQIETMQQEYVK 405
            NNF   +CT C K+  +++ H LL+VI+C DC   ++  +++ + +   +C WC    + + C  C    C  CI  N+G  Y++      W C  C  + ++ +  E  K
Sbjct:  480 NNF---RCTACNKVAVEVHSHPLLEVIVCMDCKRSIEDRVSKVDDSLERHCEWCGHIADLIDCRTCEKLFCASCIKRNIGEEYMSEAQSSGWDCCCCSPIPLQRLTLELEK 587
[Close]
BLAST of ATRX chromatin remodeler vs. UniProt/SwissProt
Match: sp|Q61687|ATRX_MOUSE (Transcriptional regulator ATRX OS=Mus musculus OX=10090 GN=Atrx PE=1 SV=3)

HSP 1 Score: 55.4546 bits (132), Expect = 1.317e-6
Identity = 31/99 (31.31%), Postives = 51/99 (51.52%), Query Frame = 1 
Query:  103 CTICYKIT-----EDIYQHALLKVIICKDCF--VVVDPILNEPEVTN--CIWCTQNKETLQCARCNYKCCYDCINSNLGVSYINCVNEKN--WLCFVCE 366
            CT C +       + IY+H  LKV+ICK+CF   + D I  + +  +  C WC +    + C  C+   C  CI  NLG   ++ + ++N  W C++C+
Sbjct:  170 CTACGQQVNHFQKDSIYRHPSLKVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICQ 268
[Close]
BLAST of ATRX chromatin remodeler vs. UniProt/SwissProt
Match: sp|P46100|ATRX_HUMAN (Transcriptional regulator ATRX OS=Homo sapiens OX=9606 GN=ATRX PE=1 SV=5)

HSP 1 Score: 53.9138 bits (128), Expect = 4.589e-6
Identity = 30/98 (30.61%), Postives = 50/98 (51.02%), Query Frame = 1 
Query:  103 CTICYKIT-----EDIYQHALLKVIICKDCF--VVVDPILNEPEVTN--CIWCTQNKETLQCARCNYKCCYDCINSNLGVSYINCVNEKN--WLCFVC 363
            CT C +       + IY+H  L+V+ICK+CF   + D I  + +  +  C WC +    + C  C+   C  CI  NLG   ++ + ++N  W C++C
Sbjct:  171 CTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYIC 268
[Close]
BLAST of ATRX chromatin remodeler vs. UniProt/SwissProt
Match: sp|Q7YQM4|ATRX_PANTR (Transcriptional regulator ATRX OS=Pan troglodytes OX=9598 GN=ATRX PE=2 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 4.628e-6
Identity = 30/98 (30.61%), Postives = 50/98 (51.02%), Query Frame = 1 
Query:  103 CTICYKIT-----EDIYQHALLKVIICKDCF--VVVDPILNEPEVTN--CIWCTQNKETLQCARCNYKCCYDCINSNLGVSYINCVNEKN--WLCFVC 363
            CT C +       + IY+H  L+V+ICK+CF   + D I  + +  +  C WC +    + C  C+   C  CI  NLG   ++ + ++N  W C++C
Sbjct:  171 CTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYIC 268
[Close]
BLAST of ATRX chromatin remodeler vs. UniProt/SwissProt
Match: sp|Q7YQM3|ATRX_PONPY (Transcriptional regulator ATRX OS=Pongo pygmaeus OX=9600 GN=ATRX PE=2 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 4.708e-6
Identity = 30/98 (30.61%), Postives = 50/98 (51.02%), Query Frame = 1 
Query:  103 CTICYKIT-----EDIYQHALLKVIICKDCF--VVVDPILNEPEVTN--CIWCTQNKETLQCARCNYKCCYDCINSNLGVSYINCVNEKN--WLCFVC 363
            CT C +       + IY+H  L+V+ICK+CF   + D I  + +  +  C WC +    + C  C+   C  CI  NLG   ++ + ++N  W C++C
Sbjct:  171 CTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYIC 268
[Close]
BLAST of ATRX chromatin remodeler vs. TrEMBL
Match: A0A251K6R8 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G147000 PE=4 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.512e-9
Identity = 31/106 (29.25%), Postives = 56/106 (52.83%), Query Frame = 1 
Query:  100 KCTICYKITEDIYQHALLKVIICKDCFVVVDPILN--EPEVTNCI--WCTQNKETLQCARCNYKCCYDCINSNLGVSYINCVNEKNWLCFVCESMQIETMQQEYVK 405
            +CT C +I  +++ H L+KVI+C+DC  +++  ++  +P+ + C   WC Q+ + + C  C    C  CI  N+G   ++ V    W C  C   Q++ +  E  K
Sbjct:  472 RCTACDRIAVEVHSHPLMKVIVCEDCKSLIEEKMHMKDPDCSECYCGWCGQSNDLVSCKSCKTLFCATCIKRNIGEDCLSKVQASGWQCCCCLPSQLQRLTSELEK 577
[Close]
BLAST of ATRX chromatin remodeler vs. TrEMBL
Match: A0A5D2IT80 (PHD-type domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES332_D11G294900v1 PE=4 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.870e-9
Identity = 37/106 (34.91%), Postives = 54/106 (50.94%), Query Frame = 1 
Query:   58 SLMNNLLRNNFISSKCTICYKITEDIYQHALLKVIICKDC--FVVVDPILNEPEVTNCI--WCTQNKETLQCARCNYKCCYDCINSNLGVSYINCVNEKNWLCFVC 363
            S+ +  L + FI   CT C+K+  ++ QH LLKVIIC+DC  F+     + + E + C   WC Q+ + L C  C    C  C+  N+G  Y+  V    W C  C
Sbjct:  475 SISSECLTDKFI---CTACHKLAVEVQQHPLLKVIICRDCKCFLEEKMHMKDSECSECYCGWCGQSNDLLSCESCKTLFCTKCVRKNIGEKYLLEVQASGWQCCCC 577
[Close]
BLAST of ATRX chromatin remodeler vs. TrEMBL
Match: A0A5J5TVQ9 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A11G262700v1 PE=4 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.759e-9
Identity = 37/106 (34.91%), Postives = 55/106 (51.89%), Query Frame = 1 
Query:   58 SLMNNLLRNNFISSKCTICYKITEDIYQHALLKVIICKDC--FVVVDPILNEPEVTNCI--WCTQNKETLQCARCNYKCCYDCINSNLGVSYINCVNEKNWLCFVC 363
            S+ +  L + FI   CT C+K+  +++QH LLKVIIC+DC  F+     + + E + C   WC Q+ + L C  C    C  C+  N+G  Y+  V    W C  C
Sbjct:  475 SISSECLTDKFI---CTACHKLAVEVHQHPLLKVIICRDCKCFLEEKMHMKDSECSECYCGWCGQSNDLLSCESCKTLFCTKCVRKNIGEKYLLEVQASGWQCCCC 577
[Close]
BLAST of ATRX chromatin remodeler vs. TrEMBL
Match: A0A5D2SYC4 (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D11G285300v1 PE=4 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.078e-8
Identity = 38/106 (35.85%), Postives = 54/106 (50.94%), Query Frame = 1 
Query:   58 SLMNNLLRNNFISSKCTICYKITEDIYQHALLKVIICKDC--FVVVDPILNEPEVTNCI--WCTQNKETLQCARCNYKCCYDCINSNLGVSYINCVNEKNWLCFVC 363
            S+ +  L N FI   CT C+K+  ++ QH LLKVIIC+DC  F+     + + E + C   WC Q+ + L C  C    C  C+  N+G  Y+  V    W C  C
Sbjct:  373 SISSECLTNKFI---CTACHKLAVEVQQHPLLKVIICRDCKCFLEEKMHMKDSECSECYCGWCGQSNDLLSCESCKTLFCTKCVRKNIGEKYLLEVQASGWQCCCC 475
[Close]
BLAST of ATRX chromatin remodeler vs. TrEMBL
Match: A0A2J6JPW0 (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_2X15881 PE=4 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.314e-8
Identity = 33/91 (36.26%), Postives = 48/91 (52.75%), Query Frame = 1 
Query:  103 CTICYKITEDIYQHALLKVIICKDCFVVVDPILNE--PEVTNCI--WCTQNKETLQCARCNYKCCYDCINSNLGVSYINCVNEKNWLCFVC 363
            CT C K+  +++ H LLKVI+C++C   +D  + E  PE + C   WC +N + + C  C    C  CI  NLG  Y+    E +W C  C
Sbjct:  428 CTACDKVANEVHTHPLLKVIVCRNCKYRLDEKMKETDPECSECFCGWCGKNGDLVSCKSCKNLFCTSCIKKNLGEEYLLKAQESSWQCCCC 518
[Close]
BLAST of ATRX chromatin remodeler vs. Ensembl Cavefish
Match: atrxl (ATRX chromatin remodeler, like [Source:ZFIN;Acc:ZDB-GENE-030131-2019])

HSP 1 Score: 56.6102 bits (135), Expect = 7.107e-8
Identity = 31/97 (31.96%), Postives = 47/97 (48.45%), Query Frame = 1 
Query:  103 CTICYKIT-----EDIYQHALLKVIICKDCF--VVVDPILNEPE-VTNCIWCTQNKETLQCARCNYKCCYDCINSNLGVSYINCV--NEKNWLCFVC 363
            CT C +       + +YQH  LKV+ICK CF   + D I  + E +    WC +    + C  C+   C  C+  NLG   ++ +   E+ W C+VC
Sbjct:  147 CTACGQQVNHFQRDSVYQHPALKVLICKSCFKYYMSDDISKDSEGMDEQCWCAEGGSLIGCDYCSNAFCKKCVLRNLGRRELSSILEEERKWYCYVC 243
[Close]
BLAST of ATRX chromatin remodeler vs. Ensembl Cavefish
Match: atrx (ATRX chromatin remodeler [Source:ZFIN;Acc:ZDB-GENE-030912-11])

HSP 1 Score: 55.0694 bits (131), Expect = 1.802e-7
Identity = 31/98 (31.63%), Postives = 47/98 (47.96%), Query Frame = 1 
Query:  103 CTICYKI-----TEDIYQHALLKVIICKDCF--VVVDPILNEPEVTN--CIWCTQNKETLQCARCNYKCCYDCINSNLGVSYINCV--NEKNWLCFVC 363
            CT C K       + ++QH  LKV+ICK CF   + D I  + +  +  C WC +    + C  C+   C  CI  NLG   ++ +   +  W C+VC
Sbjct:  106 CTACGKQVNHFHKDSVHQHPALKVLICKSCFRYYMSDDISKDEDGMDEQCRWCAEGGNLMCCDYCSNAFCKKCILRNLGRKELSGIMNEDSKWHCYVC 203
[Close]
BLAST of ATRX chromatin remodeler vs. Ensembl Cavefish
Match: atrx (ATRX chromatin remodeler [Source:ZFIN;Acc:ZDB-GENE-030912-11])

HSP 1 Score: 53.1434 bits (126), Expect = 8.129e-7
Identity = 31/98 (31.63%), Postives = 47/98 (47.96%), Query Frame = 1 
Query:  103 CTICYKIT-----EDIYQHALLKVIICKDCF--VVVDPILNEPEVTN--CIWCTQNKETLQCARCNYKCCYDCINSNLGVSYINCV--NEKNWLCFVC 363
            CT C K       + ++QH  LKV+ICK CF   + D I  + +  +  C WC +    + C  C+   C  CI  NLG   ++ +   +  W C+VC
Sbjct:  106 CTACGKQVNHFHKDSVHQHPALKVLICKSCFRYYMSDDISKDEDGMDEQCRWCAEGGNLMCCDYCSNAFCKKCILRNLGRKELSGIMNEDSKWHCYVC 203
[Close]
BLAST of ATRX chromatin remodeler vs. Ensembl Cavefish
Match: atrx (ATRX chromatin remodeler [Source:ZFIN;Acc:ZDB-GENE-030912-11])

HSP 1 Score: 52.7582 bits (125), Expect = 9.079e-7
Identity = 31/98 (31.63%), Postives = 47/98 (47.96%), Query Frame = 1 
Query:  103 CTICYKIT-----EDIYQHALLKVIICKDCF--VVVDPILNEPEVTN--CIWCTQNKETLQCARCNYKCCYDCINSNLGVSYINCV--NEKNWLCFVC 363
            CT C K       + ++QH  LKV+ICK CF   + D I  + +  +  C WC +    + C  C+   C  CI  NLG   ++ +   +  W C+VC
Sbjct:  106 CTACGKQVNHFHKDSVHQHPALKVLICKSCFRYYMSDDISKDEDGMDEQCRWCAEGGNLMCCDYCSNAFCKKCILRNLGRKELSGIMNEDSKWHCYVC 203
[Close]
BLAST of ATRX chromatin remodeler vs. Ensembl Medaka
Match: ENSORLT00000011524.2 (transcriptional regulator ATRX [Source:NCBI gene;Acc:101171430])

HSP 1 Score: 59.3066 bits (142), Expect = 1.093e-8
Identity = 35/116 (30.17%), Postives = 53/116 (45.69%), Query Frame = 1 
Query:   70 NLLRNNFISSK---------CTICYKIT-----EDIYQHALLKVIICKDCFVVV--DPILNEPEVTN--CIWCTQNKETLQCARCNYKCCYDCINSNLGVSYINCVNEKNWLCFVC 363
            N+LR  F   +         CT C +       + +YQH +LKV+ICK C+     D I  + +  +  C WC +    + C  C+   C  CI  NLG   ++ + E  W C+VC
Sbjct:  134 NVLRKEFSRKRGGEHVGIVTCTACGRQVNHFQRDSLYQHPVLKVLICKACYKYYSSDEISKDGDGMDEQCRWCAEGGNLICCDFCSNAFCKKCILRNLGRKELSGILESKWYCYVC 249
[Close]
BLAST of ATRX chromatin remodeler vs. Ensembl Medaka
Match: atrx (ATRX chromatin remodeler [Source:NCBI gene;Acc:101162138])

HSP 1 Score: 55.0694 bits (131), Expect = 2.197e-7
Identity = 35/120 (29.17%), Postives = 55/120 (45.83%), Query Frame = 1 
Query:   43 INFNFSLMNNLLRNNFISSKCTICYKITEDIY-----QHALLKVIICKDCF--VVVDPILNEPEVTN--CIWCTQNKETLQCARCNYKCCYDCINSNLGVSYINCVNEKN--WLCFVCES 369
            ++F   L ++ L+       CT C K           +H  LKV+ICK C+     D I  + +  +  C WC +  + + C  CN   C  CI  NLG   ++ + ++N  W C+VC S
Sbjct:   96 VDFKQKLPDDTLQKKV---SCTACGKQVNQFQRNSVCEHPALKVLICKSCYNYYTSDDISKDSDGMDEQCRWCAEGGKLICCDYCNNAFCKKCILRNLGRKELSNITDENSKWHCYVCRS 212
[Close]
BLAST of ATRX chromatin remodeler vs. Planmine SMEST
Match: SMESG000065439.1 (SMESG000065439.1)

HSP 1 Score: 737.258 bits (1902), Expect = 0.000e+0
Identity = 392/392 (100.00%), Postives = 392/392 (100.00%), Query Frame = 1 
Query:   64 MNNLLRNNFISSKCTICYKITEDIYQHALLKVIICKDCFVVVDPILNEPEVTNCIWCTQNKETLQCARCNYKCCYDCINSNLGVSYINCVNEKNWLCFVCESMQIETMQQEYVKLRSLMKNDIEPLIPEGAXXXXXXXXXXXXXXESDNFTKKSHRKSLNSQDLDAILNTYEKQMKASLELEDSNVPSIISEINSITNDQLSVAILCFKKCLSAFSSDLAILESRIADATATHNQSMLNKLTSLLRILIQHHIFNRLSHPKARIREDLSPISKEKSTNNVFVIPNGNSANQKLVVIMDEKWLKNGKDSQKLKLAVEKVSVDLSEKKSKDFTISDLSRIINTCXXXXXXXXXXXXXDENSSKGSYKRPRMYDEESNESIETKAERARRSLNTP 1239
            MNNLLRNNFISSKCTICYKITEDIYQHALLKVIICKDCFVVVDPILNEPEVTNCIWCTQNKETLQCARCNYKCCYDCINSNLGVSYINCVNEKNWLCFVCESMQIETMQQEYVKLRSLMKNDIEPLIPEGASSSIDISSPFVSVDESDNFTKKSHRKSLNSQDLDAILNTYEKQMKASLELEDSNVPSIISEINSITNDQLSVAILCFKKCLSAFSSDLAILESRIADATATHNQSMLNKLTSLLRILIQHHIFNRLSHPKARIREDLSPISKEKSTNNVFVIPNGNSANQKLVVIMDEKWLKNGKDSQKLKLAVEKVSVDLSEKKSKDFTISDLSRIINTCAKSGAASKRSSSADENSSKGSYKRPRMYDEESNESIETKAERARRSLNTP
Sbjct:    1 MNNLLRNNFISSKCTICYKITEDIYQHALLKVIICKDCFVVVDPILNEPEVTNCIWCTQNKETLQCARCNYKCCYDCINSNLGVSYINCVNEKNWLCFVCESMQIETMQQEYVKLRSLMKNDIEPLIPEGASSSIDISSPFVSVDESDNFTKKSHRKSLNSQDLDAILNTYEKQMKASLELEDSNVPSIISEINSITNDQLSVAILCFKKCLSAFSSDLAILESRIADATATHNQSMLNKLTSLLRILIQHHIFNRLSHPKARIREDLSPISKEKSTNNVFVIPNGNSANQKLVVIMDEKWLKNGKDSQKLKLAVEKVSVDLSEKKSKDFTISDLSRIINTCAKSGAASKRSSSADENSSKGSYKRPRMYDEESNESIETKAERARRSLNTP 392
[Close]
BLAST of ATRX chromatin remodeler vs. Planmine SMEST
Match: SMESG000065439.1 (SMESG000065439.1)

HSP 1 Score: 522.316 bits (1344), Expect = 0.000e+0
Identity = 290/290 (100.00%), Postives = 290/290 (100.00%), Query Frame = 1 
Query:  370 MQIETMQQEYVKLRSLMKNDIEPLIPEGAXXXXXXXXXXXXXXESDNFTKKSHRKSLNSQDLDAILNTYEKQMKASLELEDSNVPSIISEINSITNDQLSVAILCFKKCLSAFSSDLAILESRIADATATHNQSMLNKLTSLLRILIQHHIFNRLSHPKARIREDLSPISKEKSTNNVFVIPNGNSANQKLVVIMDEKWLKNGKDSQKLKLAVEKVSVDLSEKKSKDFTISDLSRIINTCXXXXXXXXXXXXXDENSSKGSYKRPRMYDEESNESIETKAERARRSLNTP 1239
            MQIETMQQEYVKLRSLMKNDIEPLIPEGASSSIDISSPFVSVDESDNFTKKSHRKSLNSQDLDAILNTYEKQMKASLELEDSNVPSIISEINSITNDQLSVAILCFKKCLSAFSSDLAILESRIADATATHNQSMLNKLTSLLRILIQHHIFNRLSHPKARIREDLSPISKEKSTNNVFVIPNGNSANQKLVVIMDEKWLKNGKDSQKLKLAVEKVSVDLSEKKSKDFTISDLSRIINTCAKSGAASKRSSSADENSSKGSYKRPRMYDEESNESIETKAERARRSLNTP
Sbjct:    1 MQIETMQQEYVKLRSLMKNDIEPLIPEGASSSIDISSPFVSVDESDNFTKKSHRKSLNSQDLDAILNTYEKQMKASLELEDSNVPSIISEINSITNDQLSVAILCFKKCLSAFSSDLAILESRIADATATHNQSMLNKLTSLLRILIQHHIFNRLSHPKARIREDLSPISKEKSTNNVFVIPNGNSANQKLVVIMDEKWLKNGKDSQKLKLAVEKVSVDLSEKKSKDFTISDLSRIINTCAKSGAASKRSSSADENSSKGSYKRPRMYDEESNESIETKAERARRSLNTP 290
[Close]
BLAST of ATRX chromatin remodeler vs. Planmine SMEST
Match: SMESG000008550.1 (SMESG000008550.1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.522e-15
Identity = 75/291 (25.77%), Postives = 139/291 (47.77%), Query Frame = 1 
Query:   82 NNFISSKCTIC-YKI----TEDIYQHALLKVIICKDC-------FVVVDPILNEPEVTNCIWCTQNKETLQCARCNYKCCYDCINSNLGVSYINCV----NEKNWLCFVCESMQIETMQQEYVKLRSLMKNDIEPLIPEGAXXXXXXXXXXXXXXESDNFTKKSHRKSLNSQ-------DLDAILNTYEKQMKASLE-------LEDSNVPSIISEINSITNDQLSVAILCFKKCLSAFSSDLAILESRIADATATHNQSMLNKLTSLLRILIQHHIFNRLSHPKARIRED 864
            N+ ++ KCT C  K+    +  +++H +L+VI+C +C       + ++D   N+   T C WC +    + C  C+   C  CI  NLG + ++ +    +   W CF C+   I+ +Q+   K+ +    D+  +      S I  S   +   ES N  K+S  K+ ++        +  +  N     +  ++E       L + N+ +I++ I+ + +  L  AI   KKC+ AF SD+  LE+ I+ A ++ +   +  + S+ + + +HHIFNR S  + RI ED
Sbjct:  132 NSLVTVKCTACNLKLNPYSSNSLHKHPVLEVILCHNCIENQKDKYFIIDDEDNKE--TLCRWCVEGGSLICCDFCSKSYCKTCIKRNLGRTVLSEILNQDDSVQWKCFSCDPTPIKMLQEACTKIFA----DVNSVNESRRKSQIKTSKKPLQRMESTN-KKRSISKAFSTVPQKPMNVNQSSNPNLNTINLLNNMEGFGTEWYLRNVNLENILTGIDKVDSRSLLNAINSTKKCVEAFYSDIRNLENEISKAASSTD---ILAIVSMFKSVYRHHIFNRFSQIQTRIDED 412
The following BLAST results are available for this feature:
BLAST of ATRX chromatin remodeler vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ATRX8.482e-730.61ATRX chromatin remodeler [Source:HGNC Symbol;Acc:H... [more]
ATRX9.381e-730.61ATRX chromatin remodeler [Source:HGNC Symbol;Acc:H... [more]
ATRX9.634e-730.61ATRX chromatin remodeler [Source:HGNC Symbol;Acc:H... [more]
ATRX9.720e-730.61ATRX chromatin remodeler [Source:HGNC Symbol;Acc:H... [more]
ATRX1.035e-630.61ATRX chromatin remodeler [Source:HGNC Symbol;Acc:H... [more]
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BLAST of ATRX chromatin remodeler vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of ATRX chromatin remodeler vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of ATRX chromatin remodeler vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
AL935333.46.757e-932.94pep chromosome:GRCz11:CHR_ALT_CTG5_1_13:23024946:2... [more]
atrxl7.564e-932.94ATRX chromatin remodeler, like [Source:ZFIN;Acc:ZD... [more]
atrx1.575e-630.61ATRX chromatin remodeler [Source:ZFIN;Acc:ZDB-GENE... [more]
atrx1.688e-630.61ATRX chromatin remodeler [Source:ZFIN;Acc:ZDB-GENE... [more]
atrx1.732e-630.61ATRX chromatin remodeler [Source:ZFIN;Acc:ZDB-GENE... [more]
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BLAST of ATRX chromatin remodeler vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ATRX1.293e-630.61alpha thalassemia/mental retardation syndrome X-li... [more]
ATRX1.305e-630.61alpha thalassemia/mental retardation syndrome X-li... [more]
ATRX1.452e-630.61alpha thalassemia/mental retardation syndrome X-li... [more]
ATRX1.574e-630.61alpha thalassemia/mental retardation syndrome X-li... [more]
ATRX1.591e-630.61alpha thalassemia/mental retardation syndrome X-li... [more]
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BLAST of ATRX chromatin remodeler vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Atrx1.800e-731.31ATRX, chromatin remodeler [Source:MGI Symbol;Acc:M... [more]
Atrx1.883e-731.31ATRX, chromatin remodeler [Source:MGI Symbol;Acc:M... [more]
Atrx2.032e-731.31ATRX, chromatin remodeler [Source:MGI Symbol;Acc:M... [more]
Atrx4.782e-731.31ATRX, chromatin remodeler [Source:MGI Symbol;Acc:M... [more]
Atrx6.579e-731.31ATRX, chromatin remodeler [Source:MGI Symbol;Acc:M... [more]
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BLAST of ATRX chromatin remodeler vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|F4HW51|CHR20_ARATH2.966e-827.93Protein CHROMATIN REMODELING 20 OS=Arabidopsis tha... [more]
sp|Q61687|ATRX_MOUSE1.317e-631.31Transcriptional regulator ATRX OS=Mus musculus OX=... [more]
sp|P46100|ATRX_HUMAN4.589e-630.61Transcriptional regulator ATRX OS=Homo sapiens OX=... [more]
sp|Q7YQM4|ATRX_PANTR4.628e-630.61Transcriptional regulator ATRX OS=Pan troglodytes ... [more]
sp|Q7YQM3|ATRX_PONPY4.708e-630.61Transcriptional regulator ATRX OS=Pongo pygmaeus O... [more]
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BLAST of ATRX chromatin remodeler vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A251K6R87.512e-929.25Uncharacterized protein OS=Manihot esculenta OX=39... [more]
A0A5D2IT807.870e-934.91PHD-type domain-containing protein OS=Gossypium to... [more]
A0A5J5TVQ98.759e-934.91Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A5D2SYC41.078e-835.85Uncharacterized protein OS=Gossypium mustelinum OX... [more]
A0A2J6JPW01.314e-836.26Uncharacterized protein OS=Lactuca sativa OX=4236 ... [more]
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BLAST of ATRX chromatin remodeler vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 4
Match NameE-valueIdentityDescription
atrxl7.107e-831.96ATRX chromatin remodeler, like [Source:ZFIN;Acc:ZD... [more]
atrx1.802e-731.63ATRX chromatin remodeler [Source:ZFIN;Acc:ZDB-GENE... [more]
atrx8.129e-731.63ATRX chromatin remodeler [Source:ZFIN;Acc:ZDB-GENE... [more]
atrx9.079e-731.63ATRX chromatin remodeler [Source:ZFIN;Acc:ZDB-GENE... [more]
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BLAST of ATRX chromatin remodeler vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of ATRX chromatin remodeler vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of ATRX chromatin remodeler vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of ATRX chromatin remodeler vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2
Match NameE-valueIdentityDescription
ENSORLT00000011524.21.093e-830.17transcriptional regulator ATRX [Source:NCBI gene;A... [more]
atrx2.197e-729.17ATRX chromatin remodeler [Source:NCBI gene;Acc:101... [more]
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BLAST of ATRX chromatin remodeler vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000065439.10.000e+0100.00SMESG000065439.1[more]
SMESG000065439.10.000e+0100.00SMESG000065439.1[more]
SMESG000008550.13.522e-1525.77SMESG000008550.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30005198 ID=SMED30005198|Name=ATRX chromatin remodeler|organism=Schmidtea mediterranea sexual|type=transcript|length=1662bp
GAAATTTACCATTTGGAAATAAAATAATTTTAAAATTGATATATAAATTT
TAATTTTAGCTTAATGAATAATTTATTGAGAAATAATTTCATTTCAAGTA
AATGTACAATTTGTTATAAAATAACCGAAGATATTTATCAGCATGCTTTA
TTGAAAGTCATTATTTGTAAAGATTGTTTTGTTGTCGTCGATCCCATTCT
AAATGAGCCGGAAGTCACAAATTGCATTTGGTGTACTCAAAACAAGGAAA
CGCTACAATGTGCCCGATGTAATTACAAATGTTGTTATGATTGTATTAAT
TCGAATCTTGGAGTTTCGTATATAAATTGTGTTAATGAGAAGAATTGGTT
GTGCTTTGTTTGTGAATCGATGCAAATTGAAACTATGCAGCAAGAATATG
TGAAATTGAGGTCACTAATGAAAAATGATATTGAACCGTTGATCCCTGAA
GGTGCCAGCTCATCGATTGACATTTCATCTCCCTTTGTCAGTGTCGACGA
ATCGGATAATTTTACCAAAAAAAGCCATCGGAAAAGTCTCAACTCCCAAG
ATTTAGATGCCATCCTCAACACGTACGAAAAACAGATGAAAGCTTCATTG
GAACTTGAAGACTCCAATGTTCCGTCGATAATATCGGAAATCAATTCAAT
CACAAATGATCAGTTATCAGTTGCGATTCTTTGTTTCAAAAAATGTCTGT
CGGCTTTCTCTAGCGATCTCGCAATTCTTGAATCGCGCATTGCCGATGCT
ACGGCAACACATAATCAATCAATGCTCAACAAACTAACGTCATTATTACG
CATTCTTATTCAGCATCACATTTTTAATCGATTATCCCATCCGAAAGCAA
GAATAAGAGAAGATTTGTCCCCAATCTCCAAAGAAAAATCGACCAATAAC
GTGTTTGTTATTCCCAATGGTAACAGTGCCAATCAAAAGCTTGTGGTGAT
TATGGATGAGAAATGGTTGAAAAACGGAAAGGATTCCCAGAAGTTGAAAT
TGGCCGTCGAAAAAGTTTCTGTCGATCTGAGCGAGAAAAAATCGAAAGAT
TTCACAATCAGCGATTTGTCGAGAATAATCAATACATGCGCTAAAAGTGG
AGCTGCCAGCAAACGTTCATCAAGCGCCGATGAAAATTCCTCTAAAGGAT
CCTACAAGCGGCCTAGAATGTATGATGAAGAGTCGAATGAGTCCATCGAA
ACTAAAGCCGAGAGAGCTCGTCGGTCCCTCAATACCCCTTCATGGCTGAG
TGATTTCAAAATAGAGAAGGAAAACGATGACACCGTTGCGACTATCGACG
AGAAGGACGACCAAGAATGGACGGATTATCGATTCCGGGATGAATTTGCT
CCTAGGAAGCGAGGTAGGCCACGGAAATATTTTAATTTCAATAAATCTTT
CCCATTGGGGGGAATTGGGGATGATTTTGAAAGTGAGCTGCCGAAACGGG
CGAGAGGGAGACCGAAAAAAGTTGCAACGCTCAATGACAAGCAGCCCCGA
TTTTATATACCGAAATTGAACGGAGAAACTCTGCAGAGTATCAGTGATGA
TATCTAGATGGTATATCGACCAAATCTCTCGTTTGATTATTTCCTCTTCT
CACCCGTCATTTGAATCAGAATAAGCATTGTACATTTCTAGAAATATATT
TTTAAATCGTCA
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protein sequence of SMED30005198-orf-1

>SMED30005198-orf-1 ID=SMED30005198-orf-1|Name=SMED30005198-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=498bp
MNNLLRNNFISSKCTICYKITEDIYQHALLKVIICKDCFVVVDPILNEPE
VTNCIWCTQNKETLQCARCNYKCCYDCINSNLGVSYINCVNEKNWLCFVC
ESMQIETMQQEYVKLRSLMKNDIEPLIPEGASSSIDISSPFVSVDESDNF
TKKSHRKSLNSQDLDAILNTYEKQMKASLELEDSNVPSIISEINSITNDQ
LSVAILCFKKCLSAFSSDLAILESRIADATATHNQSMLNKLTSLLRILIQ
HHIFNRLSHPKARIREDLSPISKEKSTNNVFVIPNGNSANQKLVVIMDEK
WLKNGKDSQKLKLAVEKVSVDLSEKKSKDFTISDLSRIINTCAKSGAASK
RSSSADENSSKGSYKRPRMYDEESNESIETKAERARRSLNTPSWLSDFKI
EKENDDTVATIDEKDDQEWTDYRFRDEFAPRKRGRPRKYFNFNKSFPLGG
IGDDFESELPKRARGRPKKVATLNDKQPRFYIPKLNGETLQSISDDI*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0046872metal ion binding
GO:0003735structural constituent of ribosome
GO:0003677DNA binding
GO:0005524ATP binding
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR001383Ribosomal_L28
IPR017956AT_hook_DNA-bd_motif
IPR013083Znf_RING/FYVE/PHD
IPR025766ADD
Vocabulary: biological process
TermDefinition
GO:0006412translation
Vocabulary: cellular component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome