SMED30005190
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30005190 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 12
Alignments
SMED30005190 aligns in the following genomic locations:
Homology
BLAST of SMED30005190 vs. Ensembl Human
Match: RPS15A (ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]) HSP 1 Score: 213.001 bits (541), Expect = 1.561e-71 Identity = 97/130 (74.62%), Postives = 114/130 (87.69%), Query Frame = -2 Query: 30 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 419 MVRM+VLADALKSI NAEKRGK+QVLIRP SKVI++FL VM GYI EF I+DDHR+GKIVV L GR+NKC VISPRFD +K++EKW +NLLPSRQFG++V+TTSAGIM+H EARRKH GGKILG+F+ Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
BLAST of SMED30005190 vs. Ensembl Human
Match: RPS15A (ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]) HSP 1 Score: 213.001 bits (541), Expect = 1.561e-71 Identity = 97/130 (74.62%), Postives = 114/130 (87.69%), Query Frame = -2 Query: 30 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 419 MVRM+VLADALKSI NAEKRGK+QVLIRP SKVI++FL VM GYI EF I+DDHR+GKIVV L GR+NKC VISPRFD +K++EKW +NLLPSRQFG++V+TTSAGIM+H EARRKH GGKILG+F+ Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
BLAST of SMED30005190 vs. Ensembl Human
Match: RPS15A (ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]) HSP 1 Score: 213.001 bits (541), Expect = 1.561e-71 Identity = 97/130 (74.62%), Postives = 114/130 (87.69%), Query Frame = -2 Query: 30 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 419 MVRM+VLADALKSI NAEKRGK+QVLIRP SKVI++FL VM GYI EF I+DDHR+GKIVV L GR+NKC VISPRFD +K++EKW +NLLPSRQFG++V+TTSAGIM+H EARRKH GGKILG+F+ Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
BLAST of SMED30005190 vs. Ensembl Human
Match: RPS15A (ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]) HSP 1 Score: 213.001 bits (541), Expect = 1.561e-71 Identity = 97/130 (74.62%), Postives = 114/130 (87.69%), Query Frame = -2 Query: 30 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 419 MVRM+VLADALKSI NAEKRGK+QVLIRP SKVI++FL VM GYI EF I+DDHR+GKIVV L GR+NKC VISPRFD +K++EKW +NLLPSRQFG++V+TTSAGIM+H EARRKH GGKILG+F+ Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
BLAST of SMED30005190 vs. Ensembl Human
Match: RPS15A (ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]) HSP 1 Score: 161.77 bits (408), Expect = 1.341e-51 Identity = 75/100 (75.00%), Postives = 86/100 (86.00%), Query Frame = -2 Query: 120 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFG 419 MVRM+VLADALKSI NAEKRGK+QVLIRP SKVI++FL VM GYI EF I+DDHR+GKIVV L GR+NKC VISPRFD +K++EKW +NLLPSRQFG Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFG 100
BLAST of SMED30005190 vs. Ensembl Celegans
Match: rps-22 (Ribosomal Protein, Small subunit [Source:UniProtKB/TrEMBL;Acc:O17218]) HSP 1 Score: 201.83 bits (512), Expect = 1.601e-67 Identity = 92/130 (70.77%), Postives = 113/130 (86.92%), Query Frame = -2 Query: 30 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 419 MVRM+VLADAL +I NAEKRGK+QVLIRP+SKVI++FL VM GYI EF IVDDHR+GKIVV L GR+NK +VISPR + + ++EK+T+ LLPSRQFGY+++TTSAGIM+H EARRKHLGGKILG+F+ Sbjct: 1 MVRMNVLADALNAINNAEKRGKRQVLIRPASKVIVRFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKASVISPRLNIRLNDLEKYTNTLLPSRQFGYLILTTSAGIMDHEEARRKHLGGKILGFFF 130
BLAST of SMED30005190 vs. Ensembl Celegans
Match: rps-22 (Ribosomal Protein, Small subunit [Source:UniProtKB/TrEMBL;Acc:O17218]) HSP 1 Score: 201.83 bits (512), Expect = 1.601e-67 Identity = 92/130 (70.77%), Postives = 113/130 (86.92%), Query Frame = -2 Query: 30 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 419 MVRM+VLADAL +I NAEKRGK+QVLIRP+SKVI++FL VM GYI EF IVDDHR+GKIVV L GR+NK +VISPR + + ++EK+T+ LLPSRQFGY+++TTSAGIM+H EARRKHLGGKILG+F+ Sbjct: 1 MVRMNVLADALNAINNAEKRGKRQVLIRPASKVIVRFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKASVISPRLNIRLNDLEKYTNTLLPSRQFGYLILTTSAGIMDHEEARRKHLGGKILGFFF 130
BLAST of SMED30005190 vs. Ensembl Celegans
Match: rps-22 (Ribosomal Protein, Small subunit [Source:UniProtKB/TrEMBL;Acc:O17218]) HSP 1 Score: 201.83 bits (512), Expect = 1.601e-67 Identity = 92/130 (70.77%), Postives = 113/130 (86.92%), Query Frame = -2 Query: 30 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 419 MVRM+VLADAL +I NAEKRGK+QVLIRP+SKVI++FL VM GYI EF IVDDHR+GKIVV L GR+NK +VISPR + + ++EK+T+ LLPSRQFGY+++TTSAGIM+H EARRKHLGGKILG+F+ Sbjct: 1 MVRMNVLADALNAINNAEKRGKRQVLIRPASKVIVRFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKASVISPRLNIRLNDLEKYTNTLLPSRQFGYLILTTSAGIMDHEEARRKHLGGKILGFFF 130
BLAST of SMED30005190 vs. Ensembl Celegans
Match: rps-22 (Ribosomal Protein, Small subunit [Source:UniProtKB/TrEMBL;Acc:O17218]) HSP 1 Score: 201.83 bits (512), Expect = 1.601e-67 Identity = 92/130 (70.77%), Postives = 113/130 (86.92%), Query Frame = -2 Query: 30 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 419 MVRM+VLADAL +I NAEKRGK+QVLIRP+SKVI++FL VM GYI EF IVDDHR+GKIVV L GR+NK +VISPR + + ++EK+T+ LLPSRQFGY+++TTSAGIM+H EARRKHLGGKILG+F+ Sbjct: 1 MVRMNVLADALNAINNAEKRGKRQVLIRPASKVIVRFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKASVISPRLNIRLNDLEKYTNTLLPSRQFGYLILTTSAGIMDHEEARRKHLGGKILGFFF 130
BLAST of SMED30005190 vs. Ensembl Celegans
Match: rps-22 (Ribosomal Protein, Small subunit [Source:UniProtKB/TrEMBL;Acc:O17218]) HSP 1 Score: 151.369 bits (381), Expect = 5.047e-48 Identity = 67/99 (67.68%), Postives = 84/99 (84.85%), Query Frame = -2 Query: 30 KVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 326 KVI++FL VM GYI EF IVDDHR+GKIVV L GR+NK +VISPR + + ++EK+T+ LLPSRQFGY+++TTSAGIM+H EARRKHLGGKILG+F+ Sbjct: 3 KVIVRFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKASVISPRLNIRLNDLEKYTNTLLPSRQFGYLILTTSAGIMDHEEARRKHLGGKILGFFF 101
BLAST of SMED30005190 vs. Ensembl Fly
Match: RpS15Aa (gene:FBgn0010198 transcript:FBtr0073793) HSP 1 Score: 215.698 bits (548), Expect = 6.493e-73 Identity = 101/130 (77.69%), Postives = 113/130 (86.92%), Query Frame = -2 Query: 30 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 419 MVRM+VLADALK I NAEKRGK+QVL+RP SKVII+FL VM GYI EF IVDDHRSGKIVV L GR+NKC VISPRFD + +IEKWT+NLLPSRQFGYVV+TTS GIM+H EARRKHLGGKILG+F+ Sbjct: 1 MVRMNVLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEFEIVDDHRSGKIVVNLTGRLNKCGVISPRFDVPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 130
BLAST of SMED30005190 vs. Ensembl Fly
Match: RpS15Aa (gene:FBgn0010198 transcript:FBtr0073792) HSP 1 Score: 215.698 bits (548), Expect = 6.493e-73 Identity = 101/130 (77.69%), Postives = 113/130 (86.92%), Query Frame = -2 Query: 30 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 419 MVRM+VLADALK I NAEKRGK+QVL+RP SKVII+FL VM GYI EF IVDDHRSGKIVV L GR+NKC VISPRFD + +IEKWT+NLLPSRQFGYVV+TTS GIM+H EARRKHLGGKILG+F+ Sbjct: 1 MVRMNVLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEFEIVDDHRSGKIVVNLTGRLNKCGVISPRFDVPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 130
BLAST of SMED30005190 vs. Ensembl Fly
Match: RpS15Aa (gene:FBgn0010198 transcript:FBtr0300828) HSP 1 Score: 215.698 bits (548), Expect = 6.493e-73 Identity = 101/130 (77.69%), Postives = 113/130 (86.92%), Query Frame = -2 Query: 30 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 419 MVRM+VLADALK I NAEKRGK+QVL+RP SKVII+FL VM GYI EF IVDDHRSGKIVV L GR+NKC VISPRFD + +IEKWT+NLLPSRQFGYVV+TTS GIM+H EARRKHLGGKILG+F+ Sbjct: 1 MVRMNVLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEFEIVDDHRSGKIVVNLTGRLNKCGVISPRFDVPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 130
BLAST of SMED30005190 vs. Ensembl Fly
Match: RpS15Aa (gene:FBgn0010198 transcript:FBtr0073794) HSP 1 Score: 215.698 bits (548), Expect = 6.493e-73 Identity = 101/130 (77.69%), Postives = 113/130 (86.92%), Query Frame = -2 Query: 30 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 419 MVRM+VLADALK I NAEKRGK+QVL+RP SKVII+FL VM GYI EF IVDDHRSGKIVV L GR+NKC VISPRFD + +IEKWT+NLLPSRQFGYVV+TTS GIM+H EARRKHLGGKILG+F+ Sbjct: 1 MVRMNVLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEFEIVDDHRSGKIVVNLTGRLNKCGVISPRFDVPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 130
BLAST of SMED30005190 vs. Ensembl Fly
Match: RpS15Aa (gene:FBgn0010198 transcript:FBtr0073795) HSP 1 Score: 215.698 bits (548), Expect = 6.493e-73 Identity = 101/130 (77.69%), Postives = 113/130 (86.92%), Query Frame = -2 Query: 30 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 419 MVRM+VLADALK I NAEKRGK+QVL+RP SKVII+FL VM GYI EF IVDDHRSGKIVV L GR+NKC VISPRFD + +IEKWT+NLLPSRQFGYVV+TTS GIM+H EARRKHLGGKILG+F+ Sbjct: 1 MVRMNVLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEFEIVDDHRSGKIVVNLTGRLNKCGVISPRFDVPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 130
BLAST of SMED30005190 vs. Ensembl Zebrafish
Match: rps15a (ribosomal protein S15a [Source:NCBI gene;Acc:336764]) HSP 1 Score: 212.231 bits (539), Expect = 2.334e-71 Identity = 96/130 (73.85%), Postives = 114/130 (87.69%), Query Frame = -2 Query: 30 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 419 MVRM+VLADALKSI NAEKRGK+QVL+RP SKVI++FL VM GYI EF I+DDHR+GKIVV L GR+NKC VISPRFD +K++EKW +NLLPSRQFG++V+TTSAGIM+H EARRKH GGKILG+F+ Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLLRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
BLAST of SMED30005190 vs. Ensembl Zebrafish
Match: rps15a (ribosomal protein S15a [Source:NCBI gene;Acc:336764]) HSP 1 Score: 212.231 bits (539), Expect = 2.334e-71 Identity = 96/130 (73.85%), Postives = 114/130 (87.69%), Query Frame = -2 Query: 30 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 419 MVRM+VLADALKSI NAEKRGK+QVL+RP SKVI++FL VM GYI EF I+DDHR+GKIVV L GR+NKC VISPRFD +K++EKW +NLLPSRQFG++V+TTSAGIM+H EARRKH GGKILG+F+ Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLLRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
BLAST of SMED30005190 vs. Ensembl Xenopus
Match: pdp2 (pyruvate dehyrogenase phosphatase catalytic subunit 2 [Source:Xenbase;Acc:XB-GENE-480918]) HSP 1 Score: 214.157 bits (544), Expect = 5.051e-72 Identity = 98/130 (75.38%), Postives = 114/130 (87.69%), Query Frame = -2 Query: 30 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 419 MVRM+VLADALKSI NAEKRGK+QVLIRP SKVI++FL VM GYI EF I+DDHR+GKIVV L GR+NKC VISPRFD +K++EKW +NLLPSRQFGY+V+TTSAGIM+H EARRKH GGKILG+F+ Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGYIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
BLAST of SMED30005190 vs. Ensembl Mouse
Match: Rps15a (ribosomal protein S15A [Source:MGI Symbol;Acc:MGI:2389091]) HSP 1 Score: 213.001 bits (541), Expect = 1.071e-71 Identity = 97/130 (74.62%), Postives = 114/130 (87.69%), Query Frame = -2 Query: 30 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 419 MVRM+VLADALKSI NAEKRGK+QVLIRP SKVI++FL VM GYI EF I+DDHR+GKIVV L GR+NKC VISPRFD +K++EKW +NLLPSRQFG++V+TTSAGIM+H EARRKH GGKILG+F+ Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
BLAST of SMED30005190 vs. Ensembl Mouse
Match: Rps15a (ribosomal protein S15A [Source:MGI Symbol;Acc:MGI:2389091]) HSP 1 Score: 213.001 bits (541), Expect = 1.071e-71 Identity = 97/130 (74.62%), Postives = 114/130 (87.69%), Query Frame = -2 Query: 30 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 419 MVRM+VLADALKSI NAEKRGK+QVLIRP SKVI++FL VM GYI EF I+DDHR+GKIVV L GR+NKC VISPRFD +K++EKW +NLLPSRQFG++V+TTSAGIM+H EARRKH GGKILG+F+ Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
BLAST of SMED30005190 vs. Ensembl Mouse
Match: Rps15a (ribosomal protein S15A [Source:MGI Symbol;Acc:MGI:2389091]) HSP 1 Score: 213.001 bits (541), Expect = 1.071e-71 Identity = 97/130 (74.62%), Postives = 114/130 (87.69%), Query Frame = -2 Query: 30 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 419 MVRM+VLADALKSI NAEKRGK+QVLIRP SKVI++FL VM GYI EF I+DDHR+GKIVV L GR+NKC VISPRFD +K++EKW +NLLPSRQFG++V+TTSAGIM+H EARRKH GGKILG+F+ Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
BLAST of SMED30005190 vs. Ensembl Mouse
Match: Rps15a (ribosomal protein S15A [Source:MGI Symbol;Acc:MGI:2389091]) HSP 1 Score: 174.096 bits (440), Expect = 1.519e-56 Identity = 80/108 (74.07%), Postives = 94/108 (87.04%), Query Frame = -2 Query: 96 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSA 419 MVRM+VLADALKSI NAEKRGK+QVLIRP SKVI++FL VM GYI EF I+DDHR+GKIVV L GR+NKC VISPRFD +K++EKW +NLLPSRQFG++V+TTSA Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSA 108
BLAST of SMED30005190 vs. Ensembl Mouse
Match: Rps15a (ribosomal protein S15A [Source:MGI Symbol;Acc:MGI:2389091]) HSP 1 Score: 125.561 bits (314), Expect = 7.616e-38 Identity = 60/78 (76.92%), Postives = 67/78 (85.90%), Query Frame = -2 Query: 186 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPR 419 MVRM+VLADALKSI NAEKRGK+QVLIRP SKVI++FL VM GYI EF I+DDHR+GKIVV L GR+NKC VISPR Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPR 78
BLAST of SMED30005190 vs. UniProt/SwissProt
Match: sp|P42798|R15A1_ARATH (40S ribosomal protein S15a-1 OS=Arabidopsis thaliana OX=3702 GN=RPS15AA PE=2 SV=2) HSP 1 Score: 220.32 bits (560), Expect = 1.141e-73 Identity = 102/130 (78.46%), Postives = 117/130 (90.00%), Query Frame = -2 Query: 30 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 419 MVR+SVL DALKS+YNAEKRGK+QV+IRPSSKVII+FL+VMQ GYI EF VDDHRSGKIVVELNGR+NKC VISPRFD VK IE WT+ LLPSRQFGY+V+TTSAGIM+H EARRK++GGK+LG+FY Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
BLAST of SMED30005190 vs. UniProt/SwissProt
Match: sp|Q9AT34|RS15A_DAUCA (40S ribosomal protein S15a OS=Daucus carota OX=4039 GN=RPS15A PE=2 SV=3) HSP 1 Score: 220.32 bits (560), Expect = 1.179e-73 Identity = 101/130 (77.69%), Postives = 117/130 (90.00%), Query Frame = -2 Query: 30 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 419 MVR+SVL DALKS++NAEKRGK+QV+IRPSSKV+I+FLMVMQ GYI EF VDDHRSGKIVVELNGR+NKC VISPRFD VK IE WT+ LLPSRQFGY+V+TTSAGIM+H EARRK++GGK+LG+FY Sbjct: 1 MVRVSVLNDALKSMFNAEKRGKRQVMIRPSSKVVIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
BLAST of SMED30005190 vs. UniProt/SwissProt
Match: sp|Q00332|RS15A_BRANA (40S ribosomal protein S15a OS=Brassica napus OX=3708 GN=RPS15A PE=2 SV=3) HSP 1 Score: 218.779 bits (556), Expect = 3.727e-73 Identity = 101/130 (77.69%), Postives = 117/130 (90.00%), Query Frame = -2 Query: 30 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 419 MVR+SVL DALKS++NAEKRGK+QV+IRPSSKVII+FL+VMQ GYI EF VDDHRSGKIVVELNGR+NKC VISPRFD VK IE WT+ LLPSRQFGY+V+TTSAGIM+H EARRK++GGK+LG+FY Sbjct: 1 MVRISVLNDALKSMFNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
BLAST of SMED30005190 vs. UniProt/SwissProt
Match: sp|Q9LX88|R15A4_ARATH (40S ribosomal protein S15a-4 OS=Arabidopsis thaliana OX=3702 GN=RPS15AD PE=2 SV=3) HSP 1 Score: 217.624 bits (553), Expect = 1.466e-72 Identity = 100/130 (76.92%), Postives = 116/130 (89.23%), Query Frame = -2 Query: 30 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 419 MVR+SVL D LKS+YNAEKRGK+QV+IRPSSKVII+FL+VMQ GYI EF VDDHRSGKIVVELNGR+NKC VISPRFD VK IE WT+ LLPSRQFG++V+TTSAGIM+H EARRK++GGK+LG+FY Sbjct: 1 MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
BLAST of SMED30005190 vs. UniProt/SwissProt
Match: sp|Q6XIM8|RS15A_DROYA (40S ribosomal protein S15a OS=Drosophila yakuba OX=7245 GN=RpS15Aa PE=2 SV=3) HSP 1 Score: 215.698 bits (548), Expect = 6.509e-72 Identity = 101/130 (77.69%), Postives = 113/130 (86.92%), Query Frame = -2 Query: 30 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 419 MVRM+VLADALK I NAEKRGK+QVL+RP SKVII+FL VM GYI EF IVDDHRSGKIVV L GR+NKC VISPRFD + +IEKWT+NLLPSRQFGYVV+TTS GIM+H EARRKHLGGKILG+F+ Sbjct: 1 MVRMNVLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEFEIVDDHRSGKIVVNLTGRLNKCGVISPRFDVPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 130
BLAST of SMED30005190 vs. TrEMBL
Match: A0A0V1H872 (40S ribosomal protein S15a (Fragment) OS=Trichinella zimbabwensis OX=268475 GN=RpS15Aa PE=3 SV=1) HSP 1 Score: 224.172 bits (570), Expect = 1.366e-72 Identity = 105/135 (77.78%), Postives = 115/135 (85.19%), Query Frame = -2 Query: 30 NFILNMVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 434 +F MVRM VLADAL+SI NAEKRGK+QVLIRPSSKVII+FL VM GYI EF IVDDHRSGKIVV L GRINKC VISPRFD +++IEKWT LLPSRQFGYVV+TTS GIM+H EARRKHLGGKILGYF+ Sbjct: 6 SFSFKMVRMDVLADALRSISNAEKRGKRQVLIRPSSKVIIRFLTVMMQHGYINEFEIVDDHRSGKIVVNLTGRINKCGVISPRFDVGIRDIEKWTEKLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGYFF 140
BLAST of SMED30005190 vs. TrEMBL
Match: A0A0V1MS34 (40S ribosomal protein S15a (Fragment) OS=Trichinella papuae OX=268474 GN=RpS15Aa PE=3 SV=1) HSP 1 Score: 224.172 bits (570), Expect = 1.366e-72 Identity = 105/135 (77.78%), Postives = 115/135 (85.19%), Query Frame = -2 Query: 30 NFILNMVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 434 +F MVRM VLADAL+SI NAEKRGK+QVLIRPSSKVII+FL VM GYI EF IVDDHRSGKIVV L GRINKC VISPRFD +++IEKWT LLPSRQFGYVV+TTS GIM+H EARRKHLGGKILGYF+ Sbjct: 6 SFSFKMVRMDVLADALRSISNAEKRGKRQVLIRPSSKVIIRFLTVMMQHGYINEFEIVDDHRSGKIVVNLTGRINKCGVISPRFDVGIRDIEKWTEKLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGYFF 140
BLAST of SMED30005190 vs. TrEMBL
Match: F6HQY9 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_08s0040g02460 PE=3 SV=1) HSP 1 Score: 225.328 bits (573), Expect = 3.012e-72 Identity = 103/137 (75.18%), Postives = 120/137 (87.59%), Query Frame = -2 Query: 30 LNNFILNMVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 440 L F MVR+SVL DALKS+YNAEKRGK+QV+IRPSSKVI++FL+VMQ GYI EF VDDHRSGKIVVELNGR+NKC VISPRFD VK+IE WT+ LLPSRQFGY+V+TTSAGIM+H EARRK++GGK+LG+FY Sbjct: 55 LQPFFARMVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIVKFLLVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKDIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 191
BLAST of SMED30005190 vs. TrEMBL
Match: A0A5N6NC77 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_22544 PE=4 SV=1) HSP 1 Score: 223.016 bits (567), Expect = 3.101e-72 Identity = 103/130 (79.23%), Postives = 117/130 (90.00%), Query Frame = -2 Query: 30 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 419 MVR+SVL DALKS+YNAEKRGK+QV+IRPSSKVII+FLMVMQ GYI EF VDDHRSGKIVVELNGR+NKC VISPRFD VK IE WT+ LLPSRQFGY+V+TTSAGIM+H EARRK++GGK+LG+FY Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEFVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
BLAST of SMED30005190 vs. TrEMBL
Match: A0A5C7HND3 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_016399 PE=3 SV=1) HSP 1 Score: 222.631 bits (566), Expect = 3.537e-72 Identity = 103/130 (79.23%), Postives = 117/130 (90.00%), Query Frame = -2 Query: 30 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 419 MVR+SVL DALKS+YNAEKRGK+QV+IRPSSKVII+FLMVMQ GYI EF VDDHRSGKIVVELNGR+NKC VISPRFD VK IE WT+ LLPSRQFGY+V+TTSAGIM+H EARRK++GGK+LG+FY Sbjct: 1 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEFVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
BLAST of SMED30005190 vs. Ensembl Cavefish
Match: rps15a (ribosomal protein S15a [Source:NCBI gene;Acc:336764]) HSP 1 Score: 182.185 bits (461), Expect = 8.217e-60 Identity = 86/130 (66.15%), Postives = 101/130 (77.69%), Query Frame = -2 Query: 30 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 419 MVRM+VLADALK RP SKVI++FL VM GYI EF I+DDHR+GKIVV LNGR+NKC VISPRFD +K++EKW SNLLPSRQFG++V+TTSAGIM+H EARRKH GGKILG+F+ Sbjct: 1 MVRMNVLADALKCPA------------RPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLNGRLNKCGVISPRFDVQLKDLEKWQSNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 118
BLAST of SMED30005190 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000010438.1 (pep scaffold:Pmarinus_7.0:GL478779:59925:63803:1 gene:ENSPMAG00000009448.1 transcript:ENSPMAT00000010438.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 214.927 bits (546), Expect = 3.055e-73 Identity = 98/130 (75.38%), Postives = 114/130 (87.69%), Query Frame = -2 Query: 30 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 419 MVRM+VLADALKSI NAEKRGK+QVLIRP SKVI++FL VM GYI EF I+DDHR+GKIVV L GR+NKC VISPRFD +K++EKW +NLLPSRQFGY+V+TTSAGIM+H EARRKH GGKILG+F+ Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQIKDLEKWQNNLLPSRQFGYIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
BLAST of SMED30005190 vs. Ensembl Yeast
Match: RPS22A (Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S15A and bacterial S8; RPS22A has a paralog, RPS22B, that arose from the whole genome duplication [Source:SGD;Acc:S000003726]) HSP 1 Score: 208.764 bits (530), Expect = 5.952e-71 Identity = 96/130 (73.85%), Postives = 112/130 (86.15%), Query Frame = -2 Query: 30 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 419 M R SVLADAL +I NAEK GK+QVLIRPSSKVII+FL VMQ GYI EF +DDHRSGKIVV+LNGR+NKC VISPRF+ + +IEKWT+NLLP+RQFGYV++TTSAGIM+H EARRKH+ GKILG+ Y Sbjct: 1 MTRSSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY 130
BLAST of SMED30005190 vs. Ensembl Yeast
Match: RPS22B (Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S15A and bacterial S8; RPS22B has a paralog, RPS22A, that arose from the whole genome duplication [Source:SGD;Acc:S000004359]) HSP 1 Score: 207.994 bits (528), Expect = 1.268e-70 Identity = 95/130 (73.08%), Postives = 112/130 (86.15%), Query Frame = -2 Query: 30 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 419 M R SVLADAL +I NAEK GK+QVL+RPSSKVII+FL VMQ GYI EF +DDHRSGKIVV+LNGR+NKC VISPRF+ + +IEKWT+NLLP+RQFGYV++TTSAGIM+H EARRKH+ GKILG+ Y Sbjct: 1 MTRSSVLADALNAINNAEKTGKRQVLLRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY 130
BLAST of SMED30005190 vs. Ensembl Nematostella
Match: EDO48339 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RJV0]) HSP 1 Score: 206.453 bits (524), Expect = 1.566e-69 Identity = 95/130 (73.08%), Postives = 111/130 (85.38%), Query Frame = -2 Query: 30 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 419 MVR++VL DAL SI NAEKRGK+QV IRPSSKVI++FL VM GYI EF IVDDHR+GKI+V L GR+NKC VISPRFD V++IE+W SNLLPSRQFG++V+TTS GIM+H EARRKH GGKILG+FY Sbjct: 1 MVRVNVLNDALVSICNAEKRGKRQVQIRPSSKVIVKFLTVMMKHGYIGEFVIVDDHRAGKIIVNLTGRLNKCGVISPRFDVGVRDIEQWASNLLPSRQFGFLVLTTSTGIMDHEEARRKHTGGKILGFFY 130
BLAST of SMED30005190 vs. Ensembl Medaka
Match: rps15a (ribosomal protein S15a [Source:NCBI gene;Acc:101164033]) HSP 1 Score: 213.772 bits (543), Expect = 4.102e-72 Identity = 98/130 (75.38%), Postives = 114/130 (87.69%), Query Frame = -2 Query: 30 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 419 MVRM+VLADALKSI NAEKRGK+QVLIRP SKVI++FL VM GYI EF I+DDHR+GKIVV L GR+NKC VISPRFD +K++EKW +NLLPSRQFGY+V+TTSAGIM+H EARRKH GGKILG+F+ Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDLQLKDLEKWQNNLLPSRQFGYIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
BLAST of SMED30005190 vs. Planmine SMEST
Match: SMESG000041069.1 (SMESG000041069.1) HSP 1 Score: 270.011 bits (689), Expect = 1.657e-94 Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = -2 Query: 30 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 419 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY Sbjct: 1 MVRMSVLADALKSIYNAEKRGKQQVLIRPSSKVIIQFLMVMQSKGYIKEFTIVDDHRSGKIVVELNGRINKCAVISPRFDTSVKNIEKWTSNLLPSRQFGYVVMTTSAGIMEHTEARRKHLGGKILGYFY 130 The following BLAST results are available for this feature:
BLAST of SMED30005190 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of SMED30005190 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of SMED30005190 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of SMED30005190 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 2
BLAST of SMED30005190 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 1
BLAST of SMED30005190 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of SMED30005190 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of SMED30005190 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30005190 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of SMED30005190 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of SMED30005190 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 2
BLAST of SMED30005190 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of SMED30005190 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of SMED30005190 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30005190 ID=SMED30005190|Name=SMED30005190|organism=Schmidtea mediterranea sexual|type=transcript|length=513bpback to top protein sequence of SMED30005190-orf-1 >SMED30005190-orf-1 ID=SMED30005190-orf-1|Name=SMED30005190-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=162bp MHKNLCYNYEIICLNKLFILKYYNLNNFILNMVRMSVLADALKSIYNAEKback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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