3' histone mRNA exonuclease 1
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30005150 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 11
Homology
BLAST of 3' histone mRNA exonuclease 1 vs. Ensembl Fly
Match: pck (gene:FBgn0013720 transcript:FBtr0070256) HSP 1 Score: 69.3218 bits (168), Expect = 1.828e-13 Identity = 47/151 (31.13%), Postives = 78/151 (51.66%), Query Frame = 1 Query: 133 IAFVSPFWVATKPSDHRQFLRIGLWTVCFDGYMKP-YQYHKAYFGCYYIYYVEYDGVRDWLNPPWLYAVQ--VMMS---IGLITHAISTFIVICQSVMVFSHANVKTLATMLFTNFSTGLCILLALIAFGVESQDSRWIQFPEYNSLSWSY 567 ++F SP+W+ + F +GLW CF ++ P Y + K + GC+ I+ EY +R++L P WL AVQ V MS + L+ +S I+ V + + + + T S+ L + LA+ FG + W+ +P++N L WSY Sbjct: 45 MSFCSPYWIESYEETRASFKNMGLWQYCFKDFVYPKYAFLKQFTGCHNIFSHEYYVIREYLLPGWLMAVQGFVTMSFIIVFLVLALLSLTIIRLPLKAVLQYEWLLVRLSYMGTAISS-LFMFLAVCIFGGCAYRRDWMMYPKFNVLGWSY 194
BLAST of 3' histone mRNA exonuclease 1 vs. Ensembl Fly
Match: pck (gene:FBgn0013720 transcript:FBtr0070255) HSP 1 Score: 69.3218 bits (168), Expect = 1.828e-13 Identity = 47/151 (31.13%), Postives = 78/151 (51.66%), Query Frame = 1 Query: 133 IAFVSPFWVATKPSDHRQFLRIGLWTVCFDGYMKP-YQYHKAYFGCYYIYYVEYDGVRDWLNPPWLYAVQ--VMMS---IGLITHAISTFIVICQSVMVFSHANVKTLATMLFTNFSTGLCILLALIAFGVESQDSRWIQFPEYNSLSWSY 567 ++F SP+W+ + F +GLW CF ++ P Y + K + GC+ I+ EY +R++L P WL AVQ V MS + L+ +S I+ V + + + + T S+ L + LA+ FG + W+ +P++N L WSY Sbjct: 45 MSFCSPYWIESYEETRASFKNMGLWQYCFKDFVYPKYAFLKQFTGCHNIFSHEYYVIREYLLPGWLMAVQGFVTMSFIIVFLVLALLSLTIIRLPLKAVLQYEWLLVRLSYMGTAISS-LFMFLAVCIFGGCAYRRDWMMYPKFNVLGWSY 194
BLAST of 3' histone mRNA exonuclease 1 vs. Ensembl Fly
Match: kune (gene:FBgn0033032 transcript:FBtr0086037) HSP 1 Score: 59.3066 bits (142), Expect = 5.507e-10 Identity = 53/237 (22.36%), Postives = 111/237 (46.84%), Query Frame = 1 Query: 73 TKTIFRVITYCTVIA-VCFNFIAFVSPFWVATKPS-DHRQFLRIGLWTVCFDGYMKPYQYHKAYF-GCYYIYYVEYDGVRDWLNPPWLYAVQVMMSIGLITHAISTFIVICQSVMVFSHANVKTLATMLFTNFSTGLCIL-------LALIAFGVESQDSRWIQFPEYNSLSWSYXXXXXXXXXXXXXXCM-LVHVFLQVARDLEMIEKRKLNETYDSIYPASEKMPTPYDPRSSSP 750 + I +V +V + +CF IAF +P+W+ T + +F +GLW VCF+ + +++ F GC +++ EY + D+L P + +VQ+ ++ + + I + + + S + + + +L + G C + +A++ FG + W+ + N + WS+A + ++ + + LV + + L I R+++E D Y + P+ P + SP Sbjct: 4 SNRILQVALCASVFSLICF-VIAFSTPYWLVTDGRLQNPRFTNLGLWEVCFNNFQDIHRFFDNSFNGCLWVFEEEYYIIHDFLLPGFYISVQLFATLCFVMCLV--VIPLTVAFLRTSRDDDRYMVLLL----AIGSCQVVGSVFGFIAVVIFGAKGDSRDWMPGWQNNDMGWSFALGVVGAVLLLPSGVLYLVEARRERYKRLNEISNREISEYGDEYY--QNQGPSAVLPTAPSP 231
BLAST of 3' histone mRNA exonuclease 1 vs. Ensembl Fly
Match: sinu (gene:FBgn0010894 transcript:FBtr0077136) HSP 1 Score: 47.7506 bits (112), Expect = 4.399e-6 Identity = 44/167 (26.35%), Postives = 72/167 (43.11%), Query Frame = 1 Query: 109 VIAVCFNFIAFVSPFWVATKPSDHR----QFLRIGLWTVCFDGY--MKPYQYHKAYFGCYYIY---YVEYDGVRDWLNPPWLYAVQ---VMMSIGLITHAISTFIVICQSVMVFSH--ANVKTLATMLFTNFSTGLCILLALIAFGVESQDSRWIQFPEYNSLSWSY 567 V A F IAF +P W+ SD+R + R+GLW CF + + + GC ++Y YD +R +L P ++ A Q + IG++ AI + I + H +K+L +L G+ +A+I F + W+ N WS+ Sbjct: 44 VFAFAFIVIAFATPSWLV---SDYRITGAKLDRLGLWVHCFRSLPDVNDDSQRRFFVGCRWVYDPFTTGYDEIRGFLLPAFMIATQFFYTLAFIGMLVSAIGVLVFILCAGPDQKHFITLIKSLGYVL---LGAGVSAAIAVIVFAGFGNRNGWMPEHANNWFGWSF 204
BLAST of 3' histone mRNA exonuclease 1 vs. TrEMBL
Match: A0A5J4NRG4 (Uncharacterized protein OS=Paragonimus westermani OX=34504 GN=DEA37_0006300 PE=4 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 1.015e-51 Identity = 78/167 (46.71%), Postives = 113/167 (67.66%), Query Frame = 1 Query: 67 KPTKTIFRVITYCTVIAVCFNFIAFVSPFWVATKPSDHRQFLRIGLWTVCFDGYMKPYQYHKAYFGCYYIYYVEYDGVRDWLNPPWLYAVQVMMSIGLITHAISTFIVICQSVMVFSHANVKTLATMLFTNFSTGLCILLALIAFGVESQDSRWIQFPEYNSLSWSY 567 + ++F V + T+ AV NF++FVSPFW+ + P H QF RIGLWT CF+GYM+P ++KAYFGCYYIY+VEYD +R+W+NP WLYAVQ + S G++ ++ F+V+CQ+ +VK L +F T + + +L+AF V DS W+ +P++N LSWSY Sbjct: 5 EKANSLFSVFLWLTLGAVVTNFVSFVSPFWIQSIPDSHSQFERIGLWTACFNGYMRPNDFNKAYFGCYYIYFVEYDNIREWINPIWLYAVQALSSSGMLMQSLVAFVVLCQTTRSIDRDDVKVTKFNLVGHFYTCITLAASLVAFAVARYDSTWMPYPQFNVLSWSY 171
BLAST of 3' histone mRNA exonuclease 1 vs. TrEMBL
Match: A0A504YKL5 (Claudin protein septate junction protein OS=Fasciola gigantica OX=46835 GN=FGIG_04743 PE=4 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.166e-50 Identity = 92/237 (38.82%), Postives = 141/237 (59.49%), Query Frame = 1 Query: 49 LMSEKDKPTKTIFRVITYCTVIAVCFNFIAFVSPFWVATKPSDHRQFLRIGLWTVCFDGYMKPYQYHKAYFGCYYIYYVEYDGVRDWLNPPWLYAVQVMMSIGLITHAISTFIVICQSVMVFSHANVKTLATMLFTNFSTGLCILLALIAFGVESQDSRWIQFPEYNSLSWSYXXXXXXXXXXXXXXCM--LVHVFLQVARDLEMIEKRKLNETYDSIYPASEKMPTP--YDPRSSS 747 +M+ +K T+ F TV + C NFIAFVSP+W+ + + QF IGLWT CF+GYM+P+ Y KAYFGCYYIYY+EYD +R W+NP W YA+QV+ S G++ H++ F+V+CQ+ N++ L +F L + +L+AF + DS W+ FP++N LSWSY+ A ++F +T+ F + + +++L D + + D P ++ P P Y+PR S Sbjct: 1 MMNVANK-TRNFFIAFLSLTVFSACTNFIAFVSPYWIQSTAESNSQFKNIGLWTACFNGYMRPHMYDKAYFGCYYIYYIEYDRIRSWINPVWFYAIQVLSSCGMLVHSLVLFVVLCQTTNSIKRDNLQVAKFTLAGHFFVCLTLAASLVAFAIARYDSTWMPFPQFNVLSWSYSVAVLSFALTLISFLVGFVRYMYLDAVLDEYQMALLRQQADMDVSSPPMKERPAPLGYEPRQLS 236
BLAST of 3' histone mRNA exonuclease 1 vs. TrEMBL
Match: A0A5K3FRX3 (Uncharacterized protein OS=Mesocestoides corti OX=53468 PE=4 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 1.329e-49 Identity = 75/169 (44.38%), Postives = 110/169 (65.09%), Query Frame = 1 Query: 61 KDKPTKTIFRVITYCTVIAVCFNFIAFVSPFWVATKPSDHRQFLRIGLWTVCFDGYMKPYQYHKAYFGCYYIYYVEYDGVRDWLNPPWLYAVQVMMSIGLITHAISTFIVICQSVMVFSHANVKTLATMLFTNFSTGLCILLALIAFGVESQDSRWIQFPEYNSLSWSY 567 D + +F +++A C NFIAFVSP+W+ + + F RIGLWT CFDGYM+P QY KAY+GC+YIYYVEYD +R+WLNP WLY VQV+ SIG++ H + F ++CQ+ + ++ ++ +F G+ +L L+ F S DSRW+ +P +N LSW++ Sbjct: 9 SDAENRCLFITFLAFSLLAACLNFIAFVSPYWIEARSGAYALFNRIGLWTACFDGYMRPNQYDKAYYGCFYIYYVEYDSIREWLNPIWLYVVQVIASIGILCHGLVLFFLVCQATGRVAIESLHLTKWLMSGHFIAGISLLGTLLGFTYGSYDSRWVPYPRFNKLSWAF 177
BLAST of 3' histone mRNA exonuclease 1 vs. TrEMBL
Match: A0A094ZHR1 (Uncharacterized protein OS=Schistosoma haematobium OX=6185 GN=MS3_00524 PE=4 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 2.850e-49 Identity = 105/244 (43.03%), Postives = 147/244 (60.25%), Query Frame = 1 Query: 73 TKTIFRVITYCTVIAVCFNFIAFVSPFWVATKPSDHRQFLRIGLWTVCFDGYMKPYQYHKAYFGCYYIYYVEYDGVRDWLNPPWLYAVQVMMSIGLITHAISTFIVICQSVMVFSHANVKTLATMLFTNFSTGLCILLALIAFGVESQDSRWIQFPEYNSLSWSYXXXXXXXXXXXXXXCMLVHVFLQVARDLEMIEKRKLNETYDSIYPASEKM----PTPYDPRSSSPPVYNEV*FIVIPLY 792 K +F + T C NFI+FVSP+W+ + P + QF RIGLWTVCFDGYM+P Y+KAYFGCYYIYYV YD +RDWLNP WLY +QV S G++ H + TFIV+CQ S +++K+L + +F T L + AL+AF V DSRW+ +PE N+LSW+YA ++FI T F + ++++ ++I ++ NE + EKM P+P P S+ +NE P Y Sbjct: 4 NKRLFSCTVFFTTFGFCSNFISFVSPYWIQSIPEANSQFQRIGLWTVCFDGYMRPALYNKAYFGCYYIYYVIYDRIRDWLNPIWLYTIQVTSSCGVLVHFLVTFIVLCQVTGAISKSDLKSLKFIASGHFFTSLTLAAALVAFAVARYDSRWMPYPELNTLSWAYAVGVLSFICTFISFTISFITYIKLN---DLIHQQNTNE---HLLNDEEKMGISSPSPPAPHHST---FNEANVYTEPRY 238
BLAST of 3' histone mRNA exonuclease 1 vs. TrEMBL
Match: G7YD61 (Claudin-like protein septate junction protein OS=Clonorchis sinensis OX=79923 GN=CLF_105194 PE=4 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 1.007e-48 Identity = 78/169 (46.15%), Postives = 113/169 (66.86%), Query Frame = 1 Query: 61 KDKPTKTIFRVITYCTVIAVCFNFIAFVSPFWVATKPSDHRQFLRIGLWTVCFDGYMKPYQYHKAYFGCYYIYYVEYDGVRDWLNPPWLYAVQVMMSIGLITHAISTFIVICQSVMVFSHANVKTLATMLFTNFSTGLCILLALIAFGVESQDSRWIQFPEYNSLSWSY 567 K+K + +F V + T+ AV NFI+FVSPFW+ + P H QF RIGLWT CF+GYM+P + KAYFGCYYIY+VEYD +R W+NP WLYA+QV+ S+G++ ++ TF V+CQ + ++ + L +F T + + +L+AF + DS W+ +P N LSW+Y Sbjct: 5 KEK-SHRLFLVFLWTTIAAVTTNFISFVSPFWIQSVPEAHSQFERIGLWTACFNGYMRPDDFSKAYFGCYYIYFVEYDRIRQWINPLWLYAIQVLSSLGILLQSLVTFTVLCQVTHSVNRDDLSVVKFNLLGHFFTCVTLAASLVAFAIARYDSTWMPYPSLNVLSWAY 172
BLAST of 3' histone mRNA exonuclease 1 vs. Planmine SMEST
Match: SMESG000058668.1 (SMESG000058668.1) HSP 1 Score: 468.774 bits (1205), Expect = 3.214e-169 Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 1 Query: 52 MSEKDKPTKTIFRVITYCTVIAVCFNFIAFVSPFWVATKPSDHRQFLRIGLWTVCFDGYMKPYQYHKAYFGCYYIYYVEYDGVRDWLNPPWLYAVQVMMSIGLITHAISTFIVICQSVMVFSHANVKTLATMLFTNFSTGLCILLALIAFGVESQDSRWIQFPEYNSLSWSYXXXXXXXXXXXXXXCMLVHVFLQVARDLEMIEKRKLNETYDSIYPASEKMPTPYDPRSSSPPVYNEV 768 MSEKDKPTKTIFRVITYCTVIAVCFNFIAFVSPFWVATKPSDHRQFLRIGLWTVCFDGYMKPYQYHKAYFGCYYIYYVEYDGVRDWLNPPWLYAVQVMMSIGLITHAISTFIVICQSVMVFSHANVKTLATMLFTNFSTGLCILLALIAFGVESQDSRWIQFPEYNSLSWSYAFAAIAFIITVAVFCMLVHVFLQVARDLEMIEKRKLNETYDSIYPASEKMPTPYDPRSSSPPVYNEV Sbjct: 1 MSEKDKPTKTIFRVITYCTVIAVCFNFIAFVSPFWVATKPSDHRQFLRIGLWTVCFDGYMKPYQYHKAYFGCYYIYYVEYDGVRDWLNPPWLYAVQVMMSIGLITHAISTFIVICQSVMVFSHANVKTLATMLFTNFSTGLCILLALIAFGVESQDSRWIQFPEYNSLSWSYAFAAIAFIITVAVFCMLVHVFLQVARDLEMIEKRKLNETYDSIYPASEKMPTPYDPRSSSPPVYNEV 239
BLAST of 3' histone mRNA exonuclease 1 vs. Planmine SMEST
Match: SMESG000042798.1 (SMESG000042798.1) HSP 1 Score: 147.132 bits (370), Expect = 1.119e-41 Identity = 68/171 (39.77%), Postives = 100/171 (58.48%), Query Frame = 1 Query: 58 EKDKPTKTIFRVITYCTVIAVCFNFIAFVSPFWVATKPSDHRQFLRIGLWTVCFDGYMKPYQY-HKAYFGCYYIYYVEYDGVRDWLNPPWLYAVQVMMSIGLITHAISTFIVICQSVMVFSHANVKTLATMLFTNFSTGLCILLALIAFGVESQDSRWIQFPEYNSLSWSY 567 EK+K F+ Y A FN +AFVSP+W+ +P QF+R+GLW CFD Y+ P Y K Y GC+Y+Y+ EYD +RDWLNPPW Y VQ+M SI L+ + + +V+ + V + + T L F C ++ ++A GV S+D W+ P++N +SWS+ Sbjct: 2 EKEKKISVNFKFALYLACAAFIFNLVAFVSPYWIVARPEYPSQFVRLGLWVACFDNYIHPEDYVSKMYKGCWYVYWPEYDYIRDWLNPPWFYGVQMMSSISLLCNGGAMILVLLKFVNAINIVDKNTNILALVLQFLAFCCYIIVIVAMGVMSKDREWMPRPDHNQVSWSF 172
BLAST of 3' histone mRNA exonuclease 1 vs. Planmine SMEST
Match: SMESG000042798.1 (SMESG000042798.1) HSP 1 Score: 147.517 bits (371), Expect = 1.141e-41 Identity = 68/171 (39.77%), Postives = 100/171 (58.48%), Query Frame = 1 Query: 58 EKDKPTKTIFRVITYCTVIAVCFNFIAFVSPFWVATKPSDHRQFLRIGLWTVCFDGYMKPYQY-HKAYFGCYYIYYVEYDGVRDWLNPPWLYAVQVMMSIGLITHAISTFIVICQSVMVFSHANVKTLATMLFTNFSTGLCILLALIAFGVESQDSRWIQFPEYNSLSWSY 567 EK+K F+ Y A FN +AFVSP+W+ +P QF+R+GLW CFD Y+ P Y K Y GC+Y+Y+ EYD +RDWLNPPW Y VQ+M SI L+ + + +V+ + V + + T L F C ++ ++A GV S+D W+ P++N +SWS+ Sbjct: 2 EKEKKISVNFKFALYLACAAFIFNLVAFVSPYWIVARPEYPSQFVRLGLWVACFDNYIHPEDYVSKMYKGCWYVYWPEYDYIRDWLNPPWFYGVQMMSSISLLCNGGAMILVLLKFVNAINIVDKNTNILALVLQFLAFCCYIIVIVAMGVMSKDREWMPRPDHNQVSWSF 172
BLAST of 3' histone mRNA exonuclease 1 vs. Planmine SMEST
Match: SMESG000028931.1 (SMESG000028931.1) HSP 1 Score: 83.9593 bits (206), Expect = 8.550e-19 Identity = 48/177 (27.12%), Postives = 83/177 (46.89%), Query Frame = 1 Query: 46 ILMSEKDKPTKTIFRVITYCTVIAVCFNFIAFVSPFWVATKPSDHRQFLRIGLWTVCFDGYMKPYQYH-KAYFGCYYIYYVEYDGVRDWLNPPWLYAVQVMMSIGLITHAISTFIVICQSVMVFSHANVKTLAT--MLFTNFSTGLCILLALIAFGVESQDSRWIQFPEYNSLSWSY 567 IL+S+K + V T VI IAF + +W+ + P H +F R+GLW C +GY +++FGC++++ Y ++D L P W VQ ++ + ++I + H + L + + F+ + + +A++ FG D W+ PE N SWSY Sbjct: 11 ILLSKKRRQFYVFMSVFTLICVI------IAFCTSYWLQSWPRIHSEFKRLGLWEFCLNGYTARRDIKMQSFFGCWWLFAPYYYPIQDLLTPAWFQTVQAFFTLAFLLQLAINILLIFYGFKIIKHPERRALTSRILFFSQIVSIILTFIAIVIFGCRCFDLYWMPRPELNWPSWSY 181
BLAST of 3' histone mRNA exonuclease 1 vs. Planmine SMEST
Match: SMESG000028931.1 (SMESG000028931.1) HSP 1 Score: 80.1073 bits (196), Expect = 1.407e-17 Identity = 40/148 (27.03%), Postives = 72/148 (48.65%), Query Frame = 1 Query: 133 IAFVSPFWVATKPSDHRQFLRIGLWTVCFDGYMKPYQYH-KAYFGCYYIYYVEYDGVRDWLNPPWLYAVQVMMSIGLITHAISTFIVICQSVMVFSHANVKTLAT--MLFTNFSTGLCILLALIAFGVESQDSRWIQFPEYNSLSWSY 567 IAF + +W+ + P H +F R+GLW C +GY +++FGC++++ Y ++D L P W VQ ++ + ++I + H + L + + F+ + + +A++ FG D W+ PE N SWSY Sbjct: 11 IAFCTSYWLQSWPRIHSEFKRLGLWEFCLNGYTARRDIKMQSFFGCWWLFAPYYYPIQDLLTPAWFQTVQAFFTLAFLLQLAINILLIFYGFKIIKHPERRALTSRILFFSQIVSIILTFIAIVIFGCRCFDLYWMPRPELNWPSWSY 158 The following BLAST results are available for this feature:
BLAST of 3' histone mRNA exonuclease 1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of 3' histone mRNA exonuclease 1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of 3' histone mRNA exonuclease 1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 4
BLAST of 3' histone mRNA exonuclease 1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of 3' histone mRNA exonuclease 1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of 3' histone mRNA exonuclease 1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of 3' histone mRNA exonuclease 1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of 3' histone mRNA exonuclease 1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of 3' histone mRNA exonuclease 1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of 3' histone mRNA exonuclease 1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of 3' histone mRNA exonuclease 1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of 3' histone mRNA exonuclease 1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of 3' histone mRNA exonuclease 1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of 3' histone mRNA exonuclease 1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30005150 ID=SMED30005150|Name=3' histone mRNA exonuclease 1|organism=Schmidtea mediterranea sexual|type=transcript|length=904bpback to top protein sequence of SMED30005150-orf-1 >SMED30005150-orf-1 ID=SMED30005150-orf-1|Name=SMED30005150-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=240bp MSEKDKPTKTIFRVITYCTVIAVCFNFIAFVSPFWVATKPSDHRQFLRIGback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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