SMED30005146
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30005146 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 6
Homology
BLAST of SMED30005146 vs. TrEMBL
Match: A0A1S3HAE6 (uncharacterized protein LOC106153553 OS=Lingula unguis OX=7574 GN=LOC106153553 PE=4 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 5.738e-13 Identity = 89/356 (25.00%), Postives = 147/356 (41.29%), Query Frame = 1 Query: 1321 FTSYDQIVALSIIKGNDNTEDYAQKLQFYLKIIKNQTKHAHVTHVANYIVKNKVTPDNIFRLPGMDRFLNENPQCRESIKFCYEFYTLKIYKENYENDKIIFDPNVASDSLTDFFRXXXXXXXXXXXXXXAHKGTFYDVVIMEKPNEECPSNSSLMSTIRSKIYPYVLDTELHEVKEW-RFRDSD-KEFIIPVEHAPFKTDLIKAKPESENERDDSIIYGVDLFDETWSHLERG-SLHFFKKFDLEIGFLCYILRYFYKLTKNKNLKVSQVEFKALFITIFYQYGVSQEIKFETKLKRDIFLGMKICPMEKCLIMYSWFMNIYFMGKYFTGGAFNLTKDFPTAEKVMSASVLYAFY 2379 F S+ +V LSI+ GND T Y + L + L ++ K V + A ++ K I P + R L NPQ ++ +FYTL D L+++ + + + I + H ++ ++E P + ++R+ IY VL + V E+ R DSD K + HA P N + D + LF H E L+FF+++ + GF+ ILRYF L +NL ++ VEF ++ T F G K + + I P +C+ + +WF +Y F G L ++FP ++ + + AFY Sbjct: 249 FRSHRLLVDLSIVNGNDFTAHYMKSL-YNLLDVRGAKK---VENFAGWMRHYK----GIENHPILARELQYNPQFATAVMTSRQFYTLTAPP----------DRPTMKCPLSEYLEQAVQHGALPSNIMAMHSNFYWHRFLLEDSTPGLPCAEVALQSLRTFIYRMVLPRYENYVYEYGRTPDSDLKTIQVHAAHASL--------PPVSNIKPDRTFESLKLFHRIMMHQEPDFELNFFQRYGRKSGFIFCILRYFLVLNWGQNLYITPVEFLSVLATAF---GWEHH-------KDQWYQNIAIRPSSRCVTIGNWFQALYRYAYNFLGQMLYLNQEFPPPHEIFAGARWTAFY 568
BLAST of SMED30005146 vs. TrEMBL
Match: A0A210QAR5 (Uncharacterized protein OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT01511 PE=4 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 6.917e-12 Identity = 80/358 (22.35%), Postives = 149/358 (41.62%), Query Frame = 1 Query: 1330 YDQIVALSIIKGNDNTEDYAQKLQFYLKIIKNQTKHAHVTHVANYIVKNKVTPDNIFRLPGMDRFLNENPQCRESIKFCYEFYTLKIYKENYENDKIIFDPNVASDSLTDFFRXXXXXXXXXXXXXXAHKGTFYDVVIMEKPNEECPSNSSLMSTIRSKIYPYVLDTELHEVKEWRFRDSDKEFIIPVEHAPFKTDLIKAK-----PESENERDDSIIYGVDLFDETWSHLER--GS-LHFFKKFDLEIGFLCYILRYFYKLTKNKNLKVSQVEFKALFITIFYQYGVSQEIKFETKLKRDIFLGMKICPMEKCLIMYSWFMNIYFMGKYFTGGAFNLTKDFPTAEKVMSASVLYAFY 2379 +D +V LSI+ GND T Y K K+ + K + VA++I ++ P+ +P + ++ F ++ N+ N + + L+ K + + ++ H ++ ++E +E P ++ +R+ +Y VL V+E+ P E P +T + A P + D I + + F SH+ER GS +F+++ + GF Y+LRYF L +NL V++ EF AL G K++ G+ + P +C+ + SW+ ++Y+ F G +++ +FP + S +V FY Sbjct: 250 HDLLVELSIVGGNDFTGQYIHKGGLQQKL---EIKGRGIEGVADWI-RDHTVPET-------------HPVFAQEMRHNMGFRGAVVHSRNFYNLGVPPLKPSKTGHLSQILEKGIREGHFVARVMGMHNNFYWHRAVVEDLSEGQPCAEVALAPLRAHVYRIVLQRHESMVEEYGRS--------PWE--PMRTAGVLAVEDSNIPSIHRIQPDKIFWNLKHFHYIMSHMERRTGSESKWFERYGRKTGFSVYLLRYFLLLNWGRNLFVTENEFLALLAM---SLGRPSAAKYQ---------GICVRPTPRCVTLGSWYQDLYYHAYCFLGKLLSISHEFPLPCEAYSGAVWTVFY 568
BLAST of SMED30005146 vs. TrEMBL
Match: A0A0L8GFX0 (Uncharacterized protein OS=Octopus bimaculoides OX=37653 GN=OCBIM_22034150mg PE=4 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.233e-11 Identity = 80/359 (22.28%), Postives = 157/359 (43.73%), Query Frame = 1 Query: 1327 SYDQIVALSIIKGNDNTEDYAQKLQFYLKIIKNQTKHAHVTHVANYIVKNKVTPDNIFRLPGMDRFLNENPQCRESIKFCYEFYTLKIYKENYENDKIIFDPNVASDSLTDFFRXXXXXXXXXXXXXXAHKGTFYDVVIMEKPNEECPSNSSLMSTIRSKIYPYVLDTELHEVKEWRFRDSDKEFIIPVEHAPFKTDLIKAK--PESENERDDSIIYGVDLFDETWSHLERG------SLHFFKKFDLEIGFLCYILRYFYKLTKNKNLKVSQVEFKALFITIFYQYGVSQEIKFETKLKRDIFLGMKICPMEKCLIMYSWFMNIYFMGKYFTGGAFNLTKDFPTAEKVMSASVLYAFY 2379 S D+++ L+I+ GND T Y + Q L + + + + ++ ++ K ++ P +D + N + +++ FY L++ ++ +N+K SLT+ ++L + K+ AH G ++ V+ E P +L+S +RS IY +L V ++ + D+ I P + K K P+ E + ++I + + +F + + E G ++F ++ GF+ Y LRYF L NL +++ EF L +F K E + +R + P +C+ + +W +I+ + G LT++FP + S S +Y Sbjct: 248 SSDELIELAIVCGNDLTSHYMRNNQTLLYKLDIRERKNQLENIVAWVKSYKRIENH----PLLDNEMRNNSEFALAVQLSRSFYKLELVQDYDDNNK---------GSLTELVIERLKTKTLHPKMLGAHHGLYWQKVLFEDLYNYWPGIETLLSNLRSCIYRILLPLNEMGVIDYGW---DQSLTI----MPHTVSVAKWKWLPQFEEIKKENISHNLKIFHKIITQQEPGWKTQDWPRNYFIRYGRHNGFIFYCLRYFLLLNWQHNLFITEREFLTLICLLFTH-------KEEKQYQR-----YPLTPTSRCITINNWMQDIFHHAYGYLGTLLFLTEEFPRPATLFSGSTWVVYY 574
BLAST of SMED30005146 vs. TrEMBL
Match: K1QJE9 (Uncharacterized protein OS=Crassostrea gigas OX=29159 GN=CGI_10014990 PE=4 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.602e-11 Identity = 89/409 (21.76%), Postives = 166/409 (40.59%), Query Frame = 1 Query: 1321 FTSYDQIVALSIIKGNDNTEDYAQKLQFYLKIIKNQTKHAHVTHVANYIVKNKVTPDNIFRLPGMDRFLNENPQCRESIKFCYEFYTLKIYKENYENDKIIFDPNVASDSLTDFFRXXXXXXXXXXXXXXAHKGTFYDVVIMEKPNEECPSNSSLMSTIRSKIYPYVLDTELHEVKEWRFRDSDK---EFIIPVEHAPFKTDLIKAKPESENERDDSIIYGVDLFDETWSH---LERGSLHFFKKFDLEIGFLCYILRYFYKLTKNKNLKVSQVEFKALFITIFYQYGVSQEIKFETKLKRDIFLGMKICPMEKCLIMYSWFMNIYFMGKYFTGGAFNLTKDFPTAEKVMSASVLYAFYEYYMNDRNRRVEHLDETVVESIKDLGESVLAHFSDQYDAVTTQ*THKLCI 2529 F S +V LSII GND T Y I+ + V A ++ + + ++ P ++R ++ N +++ FY L+ E V + +K+S + + + H ++ ++ E P ++ +R+ IY VL + V E+ D E ++ ++ P ++D I + ++ F SH +ER +F ++ + GF+ Y LRYF L +NL++ Q EF AL +F + + + + ++I P +C+ + +WF+++Y F G LT +FP E++ S SV FY +D T + + + VL+ DQ +AV + H + + Sbjct: 249 FQSPHLMVELSIIAGNDFTSQYVSTGLNRQIDIRGRIG---VETFAEWVKRYRGIENH----PMLNREMSRNVSFARAVEHSRMFYCLQSNPEEI----------VHKGYFSKLLAEKISSLKYPSHLMAMHNNFYWHRLLQEDTTRGQPCAEEALTELRALIYRIVLPRRENLVNEYGRSPWDTLRIEGVLAIDDPNL--------PALHKIQEDKIFWNLNSFHYIMSHQEPVERPK--WFDRYGRKNGFIVYCLRYFLLLNWGRNLQLQQQEFLALCALVF------------ARPREEHYQQIQIRPTPRCVSIGNWFLDVYRHAFLFLGKLLYLTHEFPLPEEIYSGSVWTCFYMCCKDD----------TYYAASRQTTQEVLSWIQDQMNAVISDKRHPIML 608
BLAST of SMED30005146 vs. TrEMBL
Match: A0A2T7PUB9 (Uncharacterized protein OS=Pomacea canaliculata OX=400727 GN=C0Q70_04002 PE=4 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.297e-9 Identity = 58/210 (27.62%), Postives = 97/210 (46.19%), Query Frame = 1 Query: 1765 CPSNSSLMSTIRSKIYPYVLDTELHEVKEWRFRDSDKEFIIPVEHAPFKTDLIKAKPESENERDDSIIYGVDLFDETWSHLERGSL---HFFKKFDLEIGFLCYILRYFYKLTKNKNLKVSQVEFKALFITIFYQYGVSQEIKFETKLKRDIFLGMKICPMEKCLIMYSWFMNIYFMGKYFTGGAFNLTKDFPTAEKVMSAS---VLYAF 2376 C L++ +R+ +Y +L V E+ + ++F +A +L P + R++ I + LF + LE G +F K+ + GF+ YILRYF L + L V++ EF AL T F G S+E ++ +++CP +CL + + F +IY F G +L +FP +++ S S VLYA Sbjct: 381 CAPAEELLAPLRADLYAILLPRHKAFVTEYG-QTMRQDFQQMQNYAVNDKNL----PSLNHIRENQIFRNMRLFHYIMTRLEPGQAPEKTWFDKYGRKTGFIFYILRYFLLLNWGQCLNVTEAEFLALVATAF---GASKESSWQE---------LRVCPDPRCLTIAALFQDIYRHAFLFLGSVLHLKHEFPLPKEIFSGSMWTVLYAL 573
BLAST of SMED30005146 vs. Planmine SMEST
Match: SMESG000001486.1 (SMESG000001486.1) HSP 1 Score: 788.875 bits (2036), Expect = 0.000e+0 Identity = 396/396 (100.00%), Postives = 396/396 (100.00%), Query Frame = 1 Query: 1321 FTSYDQIVALSIIKGNDNTEDYAQKLQFYLKIIKNQTKHAHVTHVANYIVKNKVTPDNIFRLPGMDRFLNENPQCRESIKFCYEFYTLKIYKENYENDKIIFDPNVASDSLTDFFRXXXXXXXXXXXXXXAHKGTFYDVVIMEKPNEECPSNSSLMSTIRSKIYPYVLDTELHEVKEWRFRDSDKEFIIPVEHAPFKTDLIKAKPESENERDDSIIYGVDLFDETWSHLERGSLHFFKKFDLEIGFLCYILRYFYKLTKNKNLKVSQVEFKALFITIFYQYGVSQEIKFETKLKRDIFLGMKICPMEKCLIMYSWFMNIYFMGKYFTGGAFNLTKDFPTAEKVMSASVLYAFYEYYMNDRNRRVEHLDETVVESIKDLGESVLAHFSDQYDAVTTQ 2508 FTSYDQIVALSIIKGNDNTEDYAQKLQFYLKIIKNQTKHAHVTHVANYIVKNKVTPDNIFRLPGMDRFLNENPQCRESIKFCYEFYTLKIYKENYENDKIIFDPNVASDSLTDFFRKKLSKSEISKKIYSAHKGTFYDVVIMEKPNEECPSNSSLMSTIRSKIYPYVLDTELHEVKEWRFRDSDKEFIIPVEHAPFKTDLIKAKPESENERDDSIIYGVDLFDETWSHLERGSLHFFKKFDLEIGFLCYILRYFYKLTKNKNLKVSQVEFKALFITIFYQYGVSQEIKFETKLKRDIFLGMKICPMEKCLIMYSWFMNIYFMGKYFTGGAFNLTKDFPTAEKVMSASVLYAFYEYYMNDRNRRVEHLDETVVESIKDLGESVLAHFSDQYDAVTTQ Sbjct: 243 FTSYDQIVALSIIKGNDNTEDYAQKLQFYLKIIKNQTKHAHVTHVANYIVKNKVTPDNIFRLPGMDRFLNENPQCRESIKFCYEFYTLKIYKENYENDKIIFDPNVASDSLTDFFRKKLSKSEISKKIYSAHKGTFYDVVIMEKPNEECPSNSSLMSTIRSKIYPYVLDTELHEVKEWRFRDSDKEFIIPVEHAPFKTDLIKAKPESENERDDSIIYGVDLFDETWSHLERGSLHFFKKFDLEIGFLCYILRYFYKLTKNKNLKVSQVEFKALFITIFYQYGVSQEIKFETKLKRDIFLGMKICPMEKCLIMYSWFMNIYFMGKYFTGGAFNLTKDFPTAEKVMSASVLYAFYEYYMNDRNRRVEHLDETVVESIKDLGESVLAHFSDQYDAVTTQ 638
BLAST of SMED30005146 vs. Planmine SMEST
Match: SMESG000001486.1 (SMESG000001486.1) HSP 1 Score: 788.489 bits (2035), Expect = 0.000e+0 Identity = 396/396 (100.00%), Postives = 396/396 (100.00%), Query Frame = 1 Query: 1321 FTSYDQIVALSIIKGNDNTEDYAQKLQFYLKIIKNQTKHAHVTHVANYIVKNKVTPDNIFRLPGMDRFLNENPQCRESIKFCYEFYTLKIYKENYENDKIIFDPNVASDSLTDFFRXXXXXXXXXXXXXXAHKGTFYDVVIMEKPNEECPSNSSLMSTIRSKIYPYVLDTELHEVKEWRFRDSDKEFIIPVEHAPFKTDLIKAKPESENERDDSIIYGVDLFDETWSHLERGSLHFFKKFDLEIGFLCYILRYFYKLTKNKNLKVSQVEFKALFITIFYQYGVSQEIKFETKLKRDIFLGMKICPMEKCLIMYSWFMNIYFMGKYFTGGAFNLTKDFPTAEKVMSASVLYAFYEYYMNDRNRRVEHLDETVVESIKDLGESVLAHFSDQYDAVTTQ 2508 FTSYDQIVALSIIKGNDNTEDYAQKLQFYLKIIKNQTKHAHVTHVANYIVKNKVTPDNIFRLPGMDRFLNENPQCRESIKFCYEFYTLKIYKENYENDKIIFDPNVASDSLTDFFRKKLSKSEISKKIYSAHKGTFYDVVIMEKPNEECPSNSSLMSTIRSKIYPYVLDTELHEVKEWRFRDSDKEFIIPVEHAPFKTDLIKAKPESENERDDSIIYGVDLFDETWSHLERGSLHFFKKFDLEIGFLCYILRYFYKLTKNKNLKVSQVEFKALFITIFYQYGVSQEIKFETKLKRDIFLGMKICPMEKCLIMYSWFMNIYFMGKYFTGGAFNLTKDFPTAEKVMSASVLYAFYEYYMNDRNRRVEHLDETVVESIKDLGESVLAHFSDQYDAVTTQ Sbjct: 251 FTSYDQIVALSIIKGNDNTEDYAQKLQFYLKIIKNQTKHAHVTHVANYIVKNKVTPDNIFRLPGMDRFLNENPQCRESIKFCYEFYTLKIYKENYENDKIIFDPNVASDSLTDFFRKKLSKSEISKKIYSAHKGTFYDVVIMEKPNEECPSNSSLMSTIRSKIYPYVLDTELHEVKEWRFRDSDKEFIIPVEHAPFKTDLIKAKPESENERDDSIIYGVDLFDETWSHLERGSLHFFKKFDLEIGFLCYILRYFYKLTKNKNLKVSQVEFKALFITIFYQYGVSQEIKFETKLKRDIFLGMKICPMEKCLIMYSWFMNIYFMGKYFTGGAFNLTKDFPTAEKVMSASVLYAFYEYYMNDRNRRVEHLDETVVESIKDLGESVLAHFSDQYDAVTTQ 646
BLAST of SMED30005146 vs. Planmine SMEST
Match: SMESG000032650.1 (SMESG000032650.1) HSP 1 Score: 618.231 bits (1593), Expect = 0.000e+0 Identity = 381/381 (100.00%), Postives = 381/381 (100.00%), Query Frame = 1 Query: 40 MPALKGFIIALEDNCSINRINHLEMTSLLISLTVCYLXXXXXXXXXXMLATMMLICMYRINTRATFYTIYFWILYIQLFKLFINVTFYEMQYILIFGSGMTALFMAFVIYSYNIFFYIYMSVDAIFFYLLAGLSVLNLIRLQKPFQIINKHIIHLSCSVIVFLAFLFNMIILYNTQAFICTNSGKIGFIYTTQLWKLPILLCLVFFHIIIPWVTSIFTTIYVYKLSRRLGSKSSNLKRXXXXXXXXXXXXXXPTITTLVSWILHRDIFLYQSLAMIMSDIGQYTSVLFILYILFVTDAKFRKLFLRFNPRLTESVEXXXXXXXXXXXXXXXXXXXXXXXNDEVVTNKVXXXXXXXXXXXXXXXXRPSKMEIKSSEVSKERA 1182 MPALKGFIIALEDNCSINRINHLEMTSLLISLTVCYLIIIIIANIVIMLATMMLICMYRINTRATFYTIYFWILYIQLFKLFINVTFYEMQYILIFGSGMTALFMAFVIYSYNIFFYIYMSVDAIFFYLLAGLSVLNLIRLQKPFQIINKHIIHLSCSVIVFLAFLFNMIILYNTQAFICTNSGKIGFIYTTQLWKLPILLCLVFFHIIIPWVTSIFTTIYVYKLSRRLGSKSSNLKRLALFINLIFILLAAPTITTLVSWILHRDIFLYQSLAMIMSDIGQYTSVLFILYILFVTDAKFRKLFLRFNPRLTESVESKYYTSNSRYKSTKTSYSTETWTNDEVVTNKVLKPPKSFSKSFISLLSRPSKMEIKSSEVSKERA Sbjct: 1 MPALKGFIIALEDNCSINRINHLEMTSLLISLTVCYLIIIIIANIVIMLATMMLICMYRINTRATFYTIYFWILYIQLFKLFINVTFYEMQYILIFGSGMTALFMAFVIYSYNIFFYIYMSVDAIFFYLLAGLSVLNLIRLQKPFQIINKHIIHLSCSVIVFLAFLFNMIILYNTQAFICTNSGKIGFIYTTQLWKLPILLCLVFFHIIIPWVTSIFTTIYVYKLSRRLGSKSSNLKRLALFINLIFILLAAPTITTLVSWILHRDIFLYQSLAMIMSDIGQYTSVLFILYILFVTDAKFRKLFLRFNPRLTESVESKYYTSNSRYKSTKTSYSTETWTNDEVVTNKVLKPPKSFSKSFISLLSRPSKMEIKSSEVSKERA 381
BLAST of SMED30005146 vs. Planmine SMEST
Match: SMESG000033479.1 (SMESG000033479.1) HSP 1 Score: 368.622 bits (945), Expect = 7.703e-117 Identity = 190/394 (48.22%), Postives = 271/394 (68.78%), Query Frame = 1 Query: 1321 FTSYDQIVALSIIKGNDNTEDYAQKLQFYLKIIKNQTKHAHVTHVANYIVKNKVTPDNIFRLPGMDRFLNENPQCRESIKFCYEFYTLKIYKENYENDKIIFDPNVASDSLTDFFRXXXXXXXXXXXXXXAHKGTFYDVVIMEKPNEECPSNSSLMSTIRSKIYPYVLDTELHEVKEWRFRDSDKEFIIPVEHAPFKTDLIKAKPESENERDDSIIYGVDLFDETWSHLERGSLHFFKKFDLEIGFLCYILRYFYKLTKNKNLKVSQVEFKALFITIFYQYGVSQEIKFETKLKRDIFLGMKICPMEKCLIMYSWFMNIYFMGKYFTGGAFNLTKDFPTAEKVMSASVLYAFYEYYMNDRNRRVEHLDETVVESIKDLGESVLAHFSDQYDAVT 2502 F+++++I+ LSI+KGNDNT +Y++ L + L I ++ + H++ VA YI N V +N+F L GM FLNENP+ + ++ FC++FYTL+ ++ I FDP A SLT F ++KLSK EIS +Y +H G + V +EKP + + +++MS IRS+IYPYVL +L V E++ RD++ +I V H+PFK++LI +KP+ E+ER + + YG+D+F+E WSHLE SL+F +F LE GFLCYILRY YK+T N++++ EF A+F +FY+Y +S + F T L +DIFLGMKICP EKCL ++SWFM IY KYF GGA NL KDFP AE VMS++V AFYE +ND N+RV+HLDE+V+ I+DL +L Y A+T Sbjct: 218 FSTHEEIIILSILKGNDNTHNYSKNLLYALGIAESLDRWPHISRVAKYIKSNHVNRNNLFDLDGMSTFLNENPEFKNTVNFCFDFYTLRHFERASGKTLINFDPGSADGSLTSFLQRKLSKMEISDSLYISHFGRYSCVFWIEKPIDAFATITTVMSEIRSRIYPYVLHADLDHVTEFKRRDAEG-ILINVVHSPFKSNLIISKPDPESERQNGVKYGIDIFEEIWSHLE-NSLNFVYQFGLEKGFLCYILRYLYKVTHGLNIEMTAKEFDAIFAMVFYRYRLSINMPFRTNLNQDIFLGMKICPTEKCLTIFSWFMEIYSTAKYFCGGALNLLKDFPKAENVMSSTVFIAFYENNVNDINKRVDHLDESVIGMIQDLENEILECLDGPYQAIT 609
BLAST of SMED30005146 vs. Planmine SMEST
Match: SMESG000033479.1 (SMESG000033479.1) HSP 1 Score: 368.237 bits (944), Expect = 1.008e-116 Identity = 190/395 (48.10%), Postives = 272/395 (68.86%), Query Frame = 1 Query: 1321 FTSYDQIVALSIIKGNDNTEDYAQKLQFYLKIIKNQTKHAHVTHVANYIVKNKVTPDNIFRLPGMDRFLNENPQCRESIKFCYEFYTLKIYKENYENDKIIFDPNVASDSLTDFFRXXXXXXXXXXXXXXAHKGTFYDVVIMEKPNEECPSNSSLMSTIRSKIYPYVLDTELHEVKEWRFRDSDKEFIIPVEHAPFKTDLIKAKPESENERDDSIIYGVDLFDETWSHLE-RGSLHFFKKFDLEIGFLCYILRYFYKLTKNKNLKVSQVEFKALFITIFYQYGVSQEIKFETKLKRDIFLGMKICPMEKCLIMYSWFMNIYFMGKYFTGGAFNLTKDFPTAEKVMSASVLYAFYEYYMNDRNRRVEHLDETVVESIKDLGESVLAHFSDQYDAVT 2502 F+++++I+ LSI+KGNDNT +Y++ L + L I ++ + H++ VA YI N V +N+F L GM FLNENP+ + ++ FC++FYTL+ ++ I FDP A SLT F ++KLSK EIS +Y +H G + V +EKP + + +++MS IRS+IYPYVL +L V E++ RD++ +I V H+PFK++LI +KP+ E+ER + + YG+D+F+E WSHLE + SL+F +F LE GFLCYILRY YK+T N++++ EF A+F +FY+Y +S + F T L +DIFLGMKICP EKCL ++SWFM IY KYF GGA NL KDFP AE VMS++V AFYE +ND N+RV+HLDE+V+ I+DL +L Y A+T Sbjct: 218 FSTHEEIIILSILKGNDNTHNYSKNLLYALGIAESLDRWPHISRVAKYIKSNHVNRNNLFDLDGMSTFLNENPEFKNTVNFCFDFYTLRHFERASGKTLINFDPGSADGSLTSFLQRKLSKMEISDSLYISHFGRYSCVFWIEKPIDAFATITTVMSEIRSRIYPYVLHADLDHVTEFKRRDAEG-ILINVVHSPFKSNLIISKPDPESERQNGVKYGIDIFEEIWSHLESQDSLNFVYQFGLEKGFLCYILRYLYKVTHGLNIEMTAKEFDAIFAMVFYRYRLSINMPFRTNLNQDIFLGMKICPTEKCLTIFSWFMEIYSTAKYFCGGALNLLKDFPKAENVMSSTVFIAFYENNVNDINKRVDHLDESVIGMIQDLENEILECLDGPYQAIT 611 The following BLAST results are available for this feature:
BLAST of SMED30005146 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30005146 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30005146 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30005146 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30005146 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30005146 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30005146 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30005146 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30005146 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30005146 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30005146 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30005146 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30005146 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30005146 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30005146 ID=SMED30005146|Name=SMED30005146|organism=Schmidtea mediterranea sexual|type=transcript|length=2579bpback to top protein sequence of SMED30005146-orf-1 >SMED30005146-orf-1 ID=SMED30005146-orf-1|Name=SMED30005146-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=333bp MDRFLNENPQCRESIKFCYEFYTLKIYKENYENDKIIFDPNVASDSLTDFback to top protein sequence of SMED30005146-orf-2 >SMED30005146-orf-2 ID=SMED30005146-orf-2|Name=SMED30005146-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=382bp MPALKGFIIALEDNCSINRINHLEMTSLLISLTVCYLIIIIIANIVIMLAback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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