UPF0546 membrane protein AGAP012180
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30005099 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 4
Homology
BLAST of UPF0546 membrane protein AGAP012180 vs. Ensembl Human
Match: TMEM234 (transmembrane protein 234 [Source:HGNC Symbol;Acc:HGNC:28837]) HSP 1 Score: 47.3654 bits (111), Expect = 8.627e-6 Identity = 33/111 (29.73%), Postives = 54/111 (48.65%), Query Frame = 1 Query: 1132 WGLTNVLMKL----FQTDDSPIYK------------NLKFLMSFLLNQSMSIAFMVTLKFSIISVAVPITNSLTFVSSAIAGYALNNEKLSWISFIGIGFVLLGLFICCTA 1416 WG T L+K Q P + N ++LM FLLNQ S+ + +TL + +++AVPI NSL + + I G AL + + G+ ++G+ +C T+ Sbjct: 18 WGGTQPLLKRASAGLQRVHEPTWAQQLLQEMKTLFLNTEYLMPFLLNQCGSLLYYLTLASTDLTLAVPICNSLAIIFTLIVGKALGEDIGGKRAVAGMVLTVIGISLCITS 128
BLAST of UPF0546 membrane protein AGAP012180 vs. Ensembl Fly
Match: CG12929 (gene:FBgn0033429 transcript:FBtr0088541) HSP 1 Score: 57.7658 bits (138), Expect = 9.485e-10 Identity = 39/114 (34.21%), Postives = 58/114 (50.88%), Query Frame = 1 Query: 1120 VGIVWGLTNVLMKL-----------------FQTDDSPIYKNLKFLMSFLLNQSMSIAFMVTLKFSIISVAVPITNSLTFVSSAIAGYALNNEKLSWISFIGIGFVLLGLFICC 1410 VG++WG+TN ++L F + I ++ + F LNQ S ++ TL+ + I+VAVP+ NSL+F +AI GYAL EKL G +L L +CC Sbjct: 11 VGLLWGVTNPFIRLGSQGIESVGDTGSKWRNFVQEARTIGSRWRYWIPFGLNQCGSALYVWTLQRASITVAVPVANSLSFAFTAITGYAL-GEKLP-----GRKVILGTLLVCC 118
BLAST of UPF0546 membrane protein AGAP012180 vs. Ensembl Fly
Match: CG12929 (gene:FBgn0033429 transcript:FBtr0113060) HSP 1 Score: 51.9878 bits (123), Expect = 5.469e-8 Identity = 34/95 (35.79%), Postives = 51/95 (53.68%), Query Frame = 1 Query: 1120 VGIVWGLTNVLMKL-----------------FQTDDSPIYKNLKFLMSFLLNQSMSIAFMVTLKFSIISVAVPITNSLTFVSSAIAGYALNNEKL 1353 VG++WG+TN ++L F + I ++ + F LNQ S ++ TL+ + I+VAVP+ NSL+F +AI GYAL EKL Sbjct: 11 VGLLWGVTNPFIRLGSQGIESVGDTGSKWRNFVQEARTIGSRWRYWIPFGLNQCGSALYVWTLQRASITVAVPVANSLSFAFTAITGYAL-GEKL 104
BLAST of UPF0546 membrane protein AGAP012180 vs. Ensembl Zebrafish
Match: tmem234 (transmembrane protein 234 [Source:ZFIN;Acc:ZDB-GENE-090313-326]) HSP 1 Score: 53.5286 bits (127), Expect = 3.501e-8 Identity = 36/112 (32.14%), Postives = 56/112 (50.00%), Query Frame = 1 Query: 1120 VGIVWGLTNVLMKLFQTDDSPIYK----------------NLKFLMSFLLNQSMSIAFMVTLKFSIISVAVPITNSLTFVSSAIAGYALNNEKLSWISFIGIGFVLLGLFIC 1407 V I+WG TN +K + K N K+L+ FLLNQS S+ F TL + +S+AVP+ NSLTF+ + + G L E + +G+ ++ G+ +C Sbjct: 13 VAILWGGTNPFLKKGTEGIEEVQKKNKLLQFLAELKFLFLNFKYLVPFLLNQSGSLVFYFTLASTDLSLAVPVVNSLTFLFTLLMGKVLGEEFGGKGAIMGMLLIMCGVTVC 124
BLAST of UPF0546 membrane protein AGAP012180 vs. Ensembl Zebrafish
Match: tmem234 (transmembrane protein 234 [Source:ZFIN;Acc:ZDB-GENE-090313-326]) HSP 1 Score: 53.5286 bits (127), Expect = 3.967e-8 Identity = 36/112 (32.14%), Postives = 56/112 (50.00%), Query Frame = 1 Query: 1120 VGIVWGLTNVLMKLFQTDDSPIYK----------------NLKFLMSFLLNQSMSIAFMVTLKFSIISVAVPITNSLTFVSSAIAGYALNNEKLSWISFIGIGFVLLGLFIC 1407 V I+WG TN +K + K N K+L+ FLLNQS S+ F TL + +S+AVP+ NSLTF+ + + G L E + +G+ ++ G+ +C Sbjct: 13 VAILWGGTNPFLKKGTEGIEEVQKKNKLLQFLAELKFLFLNFKYLVPFLLNQSGSLVFYFTLASTDLSLAVPVVNSLTFLFTLLMGKVLGEEFGGKGAIMGMLLIMCGVTVC 124
BLAST of UPF0546 membrane protein AGAP012180 vs. Ensembl Zebrafish
Match: tmem234 (transmembrane protein 234 [Source:ZFIN;Acc:ZDB-GENE-090313-326]) HSP 1 Score: 53.5286 bits (127), Expect = 3.967e-8 Identity = 36/112 (32.14%), Postives = 56/112 (50.00%), Query Frame = 1 Query: 1120 VGIVWGLTNVLMKLFQTDDSPIYK----------------NLKFLMSFLLNQSMSIAFMVTLKFSIISVAVPITNSLTFVSSAIAGYALNNEKLSWISFIGIGFVLLGLFIC 1407 V I+WG TN +K + K N K+L+ FLLNQS S+ F TL + +S+AVP+ NSLTF+ + + G L E + +G+ ++ G+ +C Sbjct: 13 VAILWGGTNPFLKKGTEGIEEVQKKNKLLQFLAELKFLFLNFKYLVPFLLNQSGSLVFYFTLASTDLSLAVPVVNSLTFLFTLLMGKVLGEEFGGKGAIMGMLLIMCGVTVC 124
BLAST of UPF0546 membrane protein AGAP012180 vs. Ensembl Mouse
Match: Tmem234 (transmembrane protein 234 [Source:MGI Symbol;Acc:MGI:1924049]) HSP 1 Score: 47.3654 bits (111), Expect = 4.935e-6 Identity = 27/78 (34.62%), Postives = 46/78 (58.97%), Query Frame = 1 Query: 1183 IYKNLKFLMSFLLNQSMSIAFMVTLKFSIISVAVPITNSLTFVSSAIAGYALNNEKLSWISFIGIGFVLLGLFICCTA 1416 ++ N ++LM FLLNQS S+ + +TL + +++AVPI NSL V + I G L + + G+ + G+ +C T+ Sbjct: 51 LFGNTEYLMPFLLNQSGSLLYYLTLASTDLTLAVPICNSLAIVFTLIVGKVLGEDIGGKEAVAGMVLTITGITVCITS 128
BLAST of UPF0546 membrane protein AGAP012180 vs. UniProt/SwissProt
Match: sp|A0NGI1|TM234_ANOGA (Transmembrane protein 234 homolog OS=Anopheles gambiae OX=7165 GN=AGAP012180 PE=3 SV=1) HSP 1 Score: 59.6918 bits (143), Expect = 1.944e-9 Identity = 39/130 (30.00%), Postives = 65/130 (50.00%), Query Frame = 1 Query: 1066 SNTLNVKMDLVIILIQCFVGIVWGLTNVLMKLFQ------TDDSPIYK----------NLKFLMSFLLNQSMSIAFMVTLKFSIISVAVPITNSLTFVSSAIAGYALNNEKLSWISFIGIGFVLLGLFIC 1407 NT+ +D+ +L V I+WG TN +K DS + + ++L+ ++NQ SI +++TL+ + +S+ VP+ NSLTFV +AI L + W + G+ V+LG IC Sbjct: 5 ENTVPASVDIYAVLSILLVAIMWGATNPFIKRGSIGYNELKADSKLGQLWLEVRFLITRWQYLLPLVINQLGSIVYVLTLQRTELSLTVPMANSLTFVFTAITARLLGERQSGWKIYCGMTLVILGTVIC 134
BLAST of UPF0546 membrane protein AGAP012180 vs. UniProt/SwissProt
Match: sp|Q54ZG7|TM234_DICDI (Transmembrane protein 234 homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0277575 PE=3 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 2.853e-8 Identity = 41/126 (32.54%), Postives = 64/126 (50.79%), Query Frame = 1 Query: 1087 MDLVIILIQCFVGIVWGLTNVLMKLFQTDDSPIYKN----------------LKFLMSFLLNQSMSIAFMVTLKFSIISVAVPITNSLTFVSSAIAGYALNNEKLSWISFIGIGFVLLGLFICCTA 1416 MD I+ VG +WG TN L+K S + K+ + + L+N S S+ F TL IS+ VPI+NSLTF+ +++ G L + L + S++G+ FVL G+ IC ++ Sbjct: 1 MDTYNIISLLLVGFIWGGTNPLIKRGSEGVSKVKKDNFLSQIIYEFVYLWTRPSYTIPMLINLSGSVVFFYTLSKVDISLVVPISNSLTFLFTSLMGMLLGEKVLHFKSYLGMIFVLAGVTICVSS 126
BLAST of UPF0546 membrane protein AGAP012180 vs. TrEMBL
Match: A0A267DPK2 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig001788g2 PE=4 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 1.338e-13 Identity = 39/115 (33.91%), Postives = 73/115 (63.48%), Query Frame = 1 Query: 1099 IILIQCFVGIVWGLTNVLMKL---FQTDDSPIY------KNLKFLMSFLLNQSMSIAFMVTLKFSIISVAVPITNSLTFVSSAIAGYALNNEKLSWISFIGIGFVLLGLFICCTA 1416 ++L+ VG+VWG+TN LMK T DS + +N K+L + NQS S+ F+ +L + +S+AVP+TN++TF+++++ G+ +N EKL+ + + + + G+++C T+ Sbjct: 1 MLLLCAAVGLVWGVTNALMKASTAADTSDSKAWSLGALLRNWKYLTALAANQSASLLFLWSLAEASLSIAVPLTNTVTFLATSLTGWLINGEKLAPTTLLAMALMSAGIYLCVTS 115
BLAST of UPF0546 membrane protein AGAP012180 vs. TrEMBL
Match: E2BHZ2 (UPF0546 membrane protein AGAP012180 OS=Harpegnathos saltator OX=610380 GN=EAI_05688 PE=4 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.437e-13 Identity = 50/137 (36.50%), Postives = 78/137 (56.93%), Query Frame = 1 Query: 1048 SKFYFVSNTLNVKMDLVIILIQCFVGIVWGLTNVLMK-----LFQTDDSPIY-----------KNLKFLMSFLLNQSMSIAFMVTLKFSIISVAVPITNSLTFVSSAIAGYALNNEKLSWISFIGIGFVLLGLFICC 1410 S+ F+ T + +D VI L C V I+WG+TN +K L +Y NLK+++ FLLNQ S+ + +TL+ + IS+AVP++NSLTFV +AI G+ L EK+ +++G+ +L G +CC Sbjct: 7 SRLIFIDVTFDFFIDSVIYL--CLVAILWGVTNPFIKKGAQGLEDVKAMSVYGQFIQEILFLVTNLKYILPFLLNQCGSVLYYLTLQSTDISLAVPVSNSLTFVFTAITGWFLGEEKVHRNTYMGMILILCGTILCC 141
BLAST of UPF0546 membrane protein AGAP012180 vs. TrEMBL
Match: A0A151XJ06 (Uncharacterized protein OS=Trachymyrmex zeteki OX=64791 GN=ALC60_00800 PE=4 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 1.590e-13 Identity = 48/123 (39.02%), Postives = 73/123 (59.35%), Query Frame = 1 Query: 1090 DLVIILIQCFVGIVWGLTNVLMK-----LFQTDDSPIY-----------KNLKFLMSFLLNQSMSIAFMVTLKFSIISVAVPITNSLTFVSSAIAGYALNNEKLSWISFIGIGFVLLGLFICC 1410 D VI L CFV I+WG+TN +K L + +Y NLK+++ FLLNQ S+ + +TL+ S +S+AVP++NSLTFV +A+ G+ L EK+ +++G+ VL G +CC Sbjct: 7 DTVIYL--CFVAILWGVTNPFIKKGAQGLENINAKSVYGQFFKEQLFLITNLKYIVPFLLNQCGSVLYFLTLQSSDLSLAVPVSNSLTFVFTAVTGWFLGEEKVHRNTYLGMILVLCGTMLCC 127
BLAST of UPF0546 membrane protein AGAP012180 vs. TrEMBL
Match: A0A158NEG4 (Uncharacterized protein OS=Atta cephalotes OX=12957 GN=105619002 PE=4 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 2.328e-13 Identity = 49/124 (39.52%), Postives = 73/124 (58.87%), Query Frame = 1 Query: 1087 MDLVIILIQCFVGIVWGLTNVLMK-----LFQTDDSPIY-----------KNLKFLMSFLLNQSMSIAFMVTLKFSIISVAVPITNSLTFVSSAIAGYALNNEKLSWISFIGIGFVLLGLFICC 1410 +D VI L CFV I+WG+TN +K L +Y NLK+++ FLLNQ S+ + +TL+ S +S+AVP++NSLTFV +AI G+ L EK+ +++G+ VL G +CC Sbjct: 5 IDSVIYL--CFVAILWGVTNPFIKKGAQGLEDIRAKSVYGQFFKEQLFLITNLKYIVPFLLNQCGSVLYFLTLQNSDLSLAVPVSNSLTFVFTAITGWFLGEEKVHRNTYLGMILVLCGTMLCC 126
BLAST of UPF0546 membrane protein AGAP012180 vs. TrEMBL
Match: A0A195FLA5 (Uncharacterized protein (Fragment) OS=Trachymyrmex septentrionalis OX=34720 GN=ALC56_04277 PE=4 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 2.900e-13 Identity = 49/124 (39.52%), Postives = 73/124 (58.87%), Query Frame = 1 Query: 1087 MDLVIILIQCFVGIVWGLTNVLMK-----LFQTDDSPIY-----------KNLKFLMSFLLNQSMSIAFMVTLKFSIISVAVPITNSLTFVSSAIAGYALNNEKLSWISFIGIGFVLLGLFICC 1410 +D VI L CFV I+WG+TN +K L +Y NLK+++ FLLNQ S+ + +TL+ S +S+AVP++NSLTFV +AI G+ L EK+ +++G+ VL G +CC Sbjct: 3 VDSVIYL--CFVAILWGVTNPFIKKGAQGLEAIRAKSVYGQFFKEQLFLITNLKYIVPFLLNQCGSVLYFLTLQSSDLSLAVPVSNSLTFVFTAITGWFLGEEKVHRNTYLGMILVLCGTMLCC 124
BLAST of UPF0546 membrane protein AGAP012180 vs. Ensembl Cavefish
Match: tmem234 (transmembrane protein 234 [Source:NCBI gene;Acc:103036571]) HSP 1 Score: 54.6842 bits (130), Expect = 1.451e-8 Identity = 36/112 (32.14%), Postives = 59/112 (52.68%), Query Frame = 1 Query: 1120 VGIVWGLTNVLMKL----------------FQTDDSPIYKNLKFLMSFLLNQSMSIAFMVTLKFSIISVAVPITNSLTFVSSAIAGYALNNEKLSWISFIGIGFVLLGLFIC 1407 V +WG TN L+K F + ++ NLK+L+ FLLNQS S+ F +TL + +S+AVP NSL+F+ + + G L + + +G+ +LG+ +C Sbjct: 13 VAALWGGTNPLLKRATVGIEHVKEGSRISQFLAEVKFLFLNLKYLLPFLLNQSGSVVFYITLATADLSLAVPTVNSLSFLFTMLTGKLLGEDFGGKRAVLGMVLTMLGVTLC 124
BLAST of UPF0546 membrane protein AGAP012180 vs. Ensembl Sea Lamprey
Match: tmem234 (transmembrane protein 234 [Source:ZFIN;Acc:ZDB-GENE-090313-326]) HSP 1 Score: 48.9062 bits (115), Expect = 2.149e-7 Identity = 34/112 (30.36%), Postives = 56/112 (50.00%), Query Frame = 1 Query: 1120 VGIVWGLTNVLMKLFQTDDSPIY----------------KNLKFLMSFLLNQSMSIAFMVTLKFSIISVAVPITNSLTFVSSAIAGYALNNEKLSWISFIGIGFVLLGLFIC 1407 V ++WG TN L+K + N ++++ F+LNQS S+ + TL + +SVAVP+TNSLTF+ + I G L + +G+ + +GL +C Sbjct: 15 VALLWGGTNPLLKRGAKGVETVRGRGRLRQLFAELCFLVSNPRYMVPFVLNQSGSLLYYFTLGSADLSVAVPLTNSLTFIFTLITGKLLGENIGGTRALLGMLLMGVGLTLC 126
BLAST of UPF0546 membrane protein AGAP012180 vs. Ensembl Nematostella
Match: EDO37684 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SF34]) HSP 1 Score: 59.3066 bits (142), Expect = 1.003e-10 Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 1 Query: 1192 NLKFLMSFLLNQSMSIAFMVTLKFSIISVAVPITNSLTFVSSAIAGYALNNEKLSWISFIGIGFVLLGLFIC 1407 N K+++ FLLNQS S+ F +TL + +S+AVPITNSLTF+ + + G L E ++IG+ V+ G+ +C Sbjct: 55 NWKYMVPFLLNQSGSVLFYLTLGSADLSLAVPITNSLTFIMTTLTGRILGEESCKTETYIGMLLVVGGVSLC 126
BLAST of UPF0546 membrane protein AGAP012180 vs. Planmine SMEST
Match: SMESG000012908.1 (SMESG000012908.1) HSP 1 Score: 214.542 bits (545), Expect = 1.198e-67 Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 1 Query: 1087 MDLVIILIQCFVGIVWGLTNVLMKLFQTDDSPIYKNLKFLMSFLLNQSMSIAFMVTLKFSIISVAVPITNSLTFVSSAIAGYALNNEKLSWISFIGIGFVLLGLFICCTA 1416 MDLVIILIQCFVGIVWGLTN LMKLFQTDDSPIYKNLKFLMSFLLNQSMSIAFMVTLKFSIISVAVPITNSLTFVSSAIAGYALNNEKLSWISFIGIGFVLLGLFICCTA Sbjct: 1 MDLVIILIQCFVGIVWGLTNALMKLFQTDDSPIYKNLKFLMSFLLNQSMSIAFMVTLKFSIISVAVPITNSLTFVSSAIAGYALNNEKLSWISFIGIGFVLLGLFICCTA 110
BLAST of UPF0546 membrane protein AGAP012180 vs. Planmine SMEST
Match: SMESG000012908.1 (SMESG000012908.1) HSP 1 Score: 174.096 bits (440), Expect = 1.404e-52 Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 Query: 1153 MKLFQTDDSPIYKNLKFLMSFLLNQSMSIAFMVTLKFSIISVAVPITNSLTFVSSAIAGYALNNEKLSWISFIGIGFVLLGLFICCTA 1416 MKLFQTDDSPIYKNLKFLMSFLLNQSMSIAFMVTLKFSIISVAVPITNSLTFVSSAIAGYALNNEKLSWISFIGIGFVLLGLFICCTA Sbjct: 1 MKLFQTDDSPIYKNLKFLMSFLLNQSMSIAFMVTLKFSIISVAVPITNSLTFVSSAIAGYALNNEKLSWISFIGIGFVLLGLFICCTA 88
BLAST of UPF0546 membrane protein AGAP012180 vs. Planmine SMEST
Match: SMESG000012908.1 (SMESG000012908.1) HSP 1 Score: 171.785 bits (434), Expect = 1.333e-51 Identity = 91/110 (82.73%), Postives = 91/110 (82.73%), Query Frame = 1 Query: 1087 MDLVIILIQCFVGIVWGLTNVLMKLFQTDDSPIYKNLKFLMSFLLNQSMSIAFMVTLKFSIISVAVPITNSLTFVSSAIAGYALNNEKLSWISFIGIGFVLLGLFICCTA 1416 MDLVIILIQCFVGIVWGLTN LMKLFQTDDSPIYKNLKFLMSFLLNQSMSIAFMVTLKF S IAGYALNNEKLSWISFIGIGFVLLGLFICCTA Sbjct: 1 MDLVIILIQCFVGIVWGLTNALMKLFQTDDSPIYKNLKFLMSFLLNQSMSIAFMVTLKF-----------------STIAGYALNNEKLSWISFIGIGFVLLGLFICCTA 93
BLAST of UPF0546 membrane protein AGAP012180 vs. Planmine SMEST
Match: SMESG000012908.1 (SMESG000012908.1) HSP 1 Score: 131.339 bits (329), Expect = 9.208e-37 Identity = 70/88 (79.55%), Postives = 70/88 (79.55%), Query Frame = 1 Query: 1153 MKLFQTDDSPIYKNLKFLMSFLLNQSMSIAFMVTLKFSIISVAVPITNSLTFVSSAIAGYALNNEKLSWISFIGIGFVLLGLFICCTA 1416 MKLFQTDDSPIYKNLKFLMSFLLNQSMSIAFMVTLKF S IAGYALNNEKLSWISFIGIGFVLLGLFICCTA Sbjct: 1 MKLFQTDDSPIYKNLKFLMSFLLNQSMSIAFMVTLKF-----------------STIAGYALNNEKLSWISFIGIGFVLLGLFICCTA 71
BLAST of UPF0546 membrane protein AGAP012180 vs. Planmine SMEST
Match: SMESG000026037.1 (SMESG000026037.1) HSP 1 Score: 72.4034 bits (176), Expect = 1.889e-14 Identity = 45/156 (28.85%), Postives = 84/156 (53.85%), Query Frame = 3 Query: 153 ISLTNFNDIETIYNSIRNMNRLSINMESCFYISLDEMIKYYLENYF--ILSKISINNSLEFCGFALYFTEYNRNIGWGVYVDDLFVAESYRRKGMCRLQMKNIAKLCKANNLKFIKLIYQNLNVHHFEIYKKFGFKN-----TGLQLLEIFGKENI 599 I N DI T+++ N+ + M F +S + M++ + N F ++ + + + G+ LY EY+ G+G Y+DD +V+ R KG+ +L M +I + N ++F+KL++Q + ++Y FGF N +G+Q+ EIFG++ + Sbjct: 4 ICKANAEDISTVFDFTNNLVQHHEGMTEFFLMSQESMLEAFNNNAFECLILFDDESETKKAVGYMLYMEEYSLLHGYGYYIDDFYVSPEIRGKGLGKLLMHHIFNIASENKVQFLKLVFQKSILGLEKMYISFGFDNISSPLSGVQMYEIFGRDEV 159 The following BLAST results are available for this feature:
BLAST of UPF0546 membrane protein AGAP012180 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 1
BLAST of UPF0546 membrane protein AGAP012180 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of UPF0546 membrane protein AGAP012180 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 2
BLAST of UPF0546 membrane protein AGAP012180 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 3
BLAST of UPF0546 membrane protein AGAP012180 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of UPF0546 membrane protein AGAP012180 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 1
BLAST of UPF0546 membrane protein AGAP012180 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 2
BLAST of UPF0546 membrane protein AGAP012180 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of UPF0546 membrane protein AGAP012180 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of UPF0546 membrane protein AGAP012180 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of UPF0546 membrane protein AGAP012180 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of UPF0546 membrane protein AGAP012180 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of UPF0546 membrane protein AGAP012180 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of UPF0546 membrane protein AGAP012180 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30005099 ID=SMED30005099|Name=UPF0546 membrane protein AGAP012180|organism=Schmidtea mediterranea sexual|type=transcript|length=1658bpback to top protein sequence of SMED30005099-orf-1 >SMED30005099-orf-1 ID=SMED30005099-orf-1|Name=SMED30005099-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=111bp MDLVIILIQCFVGIVWGLTNVLMKLFQTDDSPIYKNLKFLMSFLLNQSMSback to top protein sequence of SMED30005099-orf-2 >SMED30005099-orf-2 ID=SMED30005099-orf-2|Name=SMED30005099-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=292bp MSETNCVISLTNFNDIETIYNSIRNMNRLSINMESCFYISLDEMIKYYLEback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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