SMED30005071

Overview
NameSMED30005071
Smed IDSMED30005071
Length (bp)3757
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30005071 (SMED30005071) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30005071 (SMED30005071) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30005071 (SMED30005071) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30005071 (SMED30005071) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30005071

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 3

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30005071h1SMcG0019046 dd_Smed_v4_15319_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30005071h1SMcG0019046 dd_Smed_v4_15319_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30005071h1SMcG0019046 dd_Smed_v6_15319_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SMED30005071 vs. Planmine SMEST
Match: SMESG000026871.1 (SMESG000026871.1)

HSP 1 Score: 2011.5 bits (5210), Expect = 0.000e+0
Identity = 1017/1020 (99.71%), Postives = 1017/1020 (99.71%), Query Frame = 2 
Query:   59 MKSFFIIVWITLIIPIFAIKTSVKDFKVYTGVIFNFSAPNFIYNNRMSWLQASNQFISGLALPSMAGMEIPLTGRHGMCYQLSVLSGHQLWTRNTLADGNKCAHLLESNIIVIIRVTKRNVSALGVSDRVGLVSSICRTVCLSDFQHVVLTTPEWILSSEILAFNQSIRQDSFYFVSRVCCRYETVESVVEKISKLNENFRGIIREIRSIKLHVPWRNGASGMPSRHRRFVGRSKTYHIVSTLSPLKIVDTQIMNYVIPNMVFPLYSYPNGVNLFYFVNKSRELLTAEMNLWLKFTPSTRNIKFQPTTKNRGIHNLEICSNTLSSNEXXXXXXXXXXXXXXXXXXXHIREGRNDYIINYTLPLVWFRPQKVIKSSQIQITRVKASIPISWGNHNSLLFLNISSIEGTVLEFMVDVLVNNKTFVQLELMMPLMSLAKSRAIIYQFRSSITWLKYPFNVPKILILELNSFLNTMATRISQLFVGNSRVSILPLQIFRDNFDSIYIQRRDFTFDWTFFVNSELPKSCLISPESIVKSFEKLSTKNVINFNTSAIVSKSTSGCGLMRQALQTTSLPITRKRSTTGPLKTPTVRTDFQWRPIRIPDSKLFVECGIIFQCLLPAAIRGIQEMFITPVVFTGPKPDWIGFSNNNKSLVGVIAKTICPKREFRFMINGSNYKKQVIVNWTLIIEISTPSSSQDQKFQIDMAMISIITFDVIQIIKTIKELKRYTQLDCEEEISCKYNISLVRPPTKNDETIHMSLEILDYSRVCPQILGIFLRNKLIETPQRPNSPNPQLKRIFYRYGIGQLNFVSFQLRGKCENKRIFPPDLGEKIIFNNIPYLISLKSFHEFYNSSVELEISNISSNGIAYDSYMXXXXXXXXXXDSSILYILASTEHTRSHPYIVELTVNPGKRHKMLLPKISFQVKNLMHHPSFIPYIRELNHQISIDVTTNVIIEDTIMPLDITLEVAALADNYMRPSCQNASSLDCGADILIFLNSVIETQEGSNINYKLSSVQLLNDGNST 3118
            MKSFFIIVWITLIIPIFAIKTSVKDFKVYTGVIFNFSAPNFIYNNRMSWLQASNQFISGLALPSMAGMEIPLTGRHGMCYQLSVLSGHQLWTRNTLADGNKCAHLLESNIIVII VTKRNVSALGVSDRVGLVSSICRTVCLSDFQHVVLTTPEWILSSEILAFNQSIRQDSFYFVSRVCCRYETVESVVEKISKLNENFRGIIREIRSIKLHV WRNGASGMPSRHRRFVGRSKTYHIVSTLSPLKIVDTQIMNYVIPNMVFPLYSYPNGVNLFYFVNKSRELLTAEMNLWLKFTPSTRNIKFQPTTKNRGIHNLEICSNTLSSNESCVSVQVIVISSSPQVHQIHIREGRNDYIINYTLPLVWFRPQKVIKSSQIQITRVKASIPISWGNHNSLLFLNISSIEGTVLEFMVDVLVNNKTFVQLELMMPLMSLAKSRAIIYQFRSSITWLKYPFNVPKILILELNSFLNTMATRISQLFVGNSRVSILPLQIFRDNFDSIYIQRRDFTFDWTFFVNSELPKSCLISPESIVKSFEKLSTKNVINFNTSAIVSKSTSGCGLMRQALQTTSLPITRKRSTTGPLKTPTVRTDFQWRPIRIPDSKLFVECGIIFQCLLPAAIRGIQEMFITPVVFTGPKPDWIGFSNNNKSLVGVIAKTICPKREFRFMINGSNYKKQVIVNWTLIIEISTPSSSQDQKFQIDMAMISIITFDVIQIIKTIKELKRYTQLDCEEEISCKYNISLVRPPTKNDETIHMSLEILDYSRVCPQILGIFLRNKLIETPQRPNSPNPQLKRIFYRYGIGQLNFVSFQLRGKCENKRIFPPDLGEKIIFNNIPYLISLKSFHEFYNSSVELEISNISSNGIAYDSYMNWIKIKNKINDSSILYILASTEHTRSHPYIVELTVNPGKRHKMLLPKISFQVKNLMHHPSFIPYIRELNHQISIDVTTNVIIEDTIMPLDITLEVAALADNYMRPSCQNASSLDCGADILIFLNSVIETQEGSNINY LSSVQLLNDGNST
Sbjct:    1 MKSFFIIVWITLIIPIFAIKTSVKDFKVYTGVIFNFSAPNFIYNNRMSWLQASNQFISGLALPSMAGMEIPLTGRHGMCYQLSVLSGHQLWTRNTLADGNKCAHLLESNIIVIIGVTKRNVSALGVSDRVGLVSSICRTVCLSDFQHVVLTTPEWILSSEILAFNQSIRQDSFYFVSRVCCRYETVESVVEKISKLNENFRGIIREIRSIKLHVLWRNGASGMPSRHRRFVGRSKTYHIVSTLSPLKIVDTQIMNYVIPNMVFPLYSYPNGVNLFYFVNKSRELLTAEMNLWLKFTPSTRNIKFQPTTKNRGIHNLEICSNTLSSNESCVSVQVIVISSSPQVHQIHIREGRNDYIINYTLPLVWFRPQKVIKSSQIQITRVKASIPISWGNHNSLLFLNISSIEGTVLEFMVDVLVNNKTFVQLELMMPLMSLAKSRAIIYQFRSSITWLKYPFNVPKILILELNSFLNTMATRISQLFVGNSRVSILPLQIFRDNFDSIYIQRRDFTFDWTFFVNSELPKSCLISPESIVKSFEKLSTKNVINFNTSAIVSKSTSGCGLMRQALQTTSLPITRKRSTTGPLKTPTVRTDFQWRPIRIPDSKLFVECGIIFQCLLPAAIRGIQEMFITPVVFTGPKPDWIGFSNNNKSLVGVIAKTICPKREFRFMINGSNYKKQVIVNWTLIIEISTPSSSQDQKFQIDMAMISIITFDVIQIIKTIKELKRYTQLDCEEEISCKYNISLVRPPTKNDETIHMSLEILDYSRVCPQILGIFLRNKLIETPQRPNSPNPQLKRIFYRYGIGQLNFVSFQLRGKCENKRIFPPDLGEKIIFNNIPYLISLKSFHEFYNSSVELEISNISSNGIAYDSYMNWIKIKNKINDSSILYILASTEHTRSHPYIVELTVNPGKRHKMLLPKISFQVKNLMHHPSFIPYIRELNHQISIDVTTNVIIEDTIMPLDITLEVAALADNYMRPSCQNASSLDCGADILIFLNSVIETQEGSNINYNLSSVQLLNDGNST 1020
[Close]
BLAST of SMED30005071 vs. Planmine SMEST
Match: SMESG000026871.1 (SMESG000026871.1)

HSP 1 Score: 2004.95 bits (5193), Expect = 0.000e+0
Identity = 1017/1020 (99.71%), Postives = 1017/1020 (99.71%), Query Frame = 2 
Query:   59 MKSFFIIVWITLIIPIFAIKTSVKDFKVYTGVIFNFSAPNFIYNNRMSWLQASNQFISGLALPSMAGMEIPLTGRHGMCYQLSVLSGHQLWTRNTLADGNKCAHLLESNIIVIIRVTKRNVSALGVSDRVGLVSSICRTVCLSDFQHVVLTTPEWILSSEILAFNQSIRQDSFYFVSRVCCRYETVESVVEKISKLNENFRGIIREIRSIKLHVPWRNGASGMPSRHRRFVGRSKTYHIVSTLSPLKIVDTQIMNYVIPNMVFPLYSYPNGVNLFYFVNKSRELLTAEMNLWLKFTPSTRNIKFQPTTKNRGIHNLEICSNTLSSNEXXXXXXXXXXXXXXXXXXXHIREGRNDYIINYTLPLVWFRPQKVIKSSQIQITRVKASIPISWGNHNSLLFLNISSIEGTVLEFMVDVLVNNKTFVQLELMMPLMSLAKSRAIIYQFRSSITWLKYPFNVPKILILELNSFLNTMATRISQLFVGNSRVSILPLQIFRDNFDSIYIQRRDFTFDWTFFVNSELPKSCLISPESIVKSFEKLSTKNVINFNTSAIVSKSTSGCGLMRQALQTTSLPITRKRSTTGPLKTPTVRTDFQWRPIRIPDSKLFVECGIIFQCLLPAAIRGIQEMFITPVVFTGPKPDWIGFSNNNKSLVGVIAKTICPKREFRFMINGSNYKKQVIVNWTLIIEISTPSSSQDQKFQIDMAMISIITFDVIQIIKTIKELKRYTQLDCEEEISCKYNISLVRPPTKNDETIHMSLEILDYSRVCPQILGIFLRNKLIETPQRPNSPNPQLKRIFYRYGIGQLNFVSFQLRGKCENKRIFPPDLGEKIIFNNIPYLISLKSFHEFYNSSVELEISNISSNGIAYDSYMXXXXXXXXXXDSSILYILASTEHTRSHPYIVELTVNPGKRHKMLLPKISFQVKNLMHHPSFIPYIRELNHQISIDVTTNVIIEDTIMPLDITLEVAALADNYMRPSCQNASSLDCGADILIFLNSVIETQEGSNINYKLSSVQLLNDGNST 3118
            MKSFFIIVWITLIIPIFAIKTSVKDFKVYTGVIFNFSAPNFIYNNRMSWLQASNQFISGLALPSMAGMEIPLTGRHGMCYQLSVLSGHQLWTRNTLADGNKCAHLLESNIIVII VTKRNVSALGVSDRVGLVSSICRTVCLSDFQHVVLTTPEWILSSEILAFNQSIRQDSFYFVSRVCCRYETVESVVEKISKLNENFRGIIREIRSIKLHV WRNGASGMPSRHRRFVGRSKTYHIVSTLSPLKIVDTQIMNYVIPNMVFPLYSYPNGVNLFYFVNKSRELLTAEMNLWLKFTPSTRNIKFQPTTKNRGIHNLEICSNTLSSNESCVSVQVIVISSSPQVHQIHIREGRNDYIINYTLPLVWFRPQKVIKSSQIQITRVKASIPISWGNHNSLLFLNISSIEGTVLEFMVDVLVNNKTFVQLELMMPLMSLAKSRAIIYQFRSSITWLKYPFNVPKILILELNSFLNTMATRISQLFVGNSRVSILPLQIFRDNFDSIYIQRRDFTFDWTFFVNSELPKSCLISPESIVKSFEKLSTKNVINFNTSAIVSKSTSGCGLMRQALQTTSLPITRKRSTTGPLKTPTVRTDFQWRPIRIPDSKLFVECGIIFQCLLPAAIRGIQEMFITPVVFTGPKPDWIGFSNNNKSLVGVIAKTICPKREFRFMINGSNYKKQVIVNWTLIIEISTPSSSQDQKFQIDMAMISIITFDVIQIIKTIKELKRYTQLDCEEEISCKYNISLVRPPTKNDETIHMSLEILDYSRVCPQILGIFLRNKLIETPQRPNSPNPQLKRIFYRYGIGQLNFVSFQLRGKCENKRIFPPDLGEKIIFNNIPYLISLKSFHEFYNSSVELEISNISSNGIAYDSYMNWIKIKNKINDSSILYILASTEHTRSHPYIVELTVNPGKRHKMLLPKISFQVKNLMHHPSFIPYIRELNHQISIDVTTNVIIEDTIMPLDITLEVAALADNYMRPSCQNASSLDCGADILIFLNSVIETQEGSNINY LSSVQLLNDGNST
Sbjct:    1 MKSFFIIVWITLIIPIFAIKTSVKDFKVYTGVIFNFSAPNFIYNNRMSWLQASNQFISGLALPSMAGMEIPLTGRHGMCYQLSVLSGHQLWTRNTLADGNKCAHLLESNIIVIIGVTKRNVSALGVSDRVGLVSSICRTVCLSDFQHVVLTTPEWILSSEILAFNQSIRQDSFYFVSRVCCRYETVESVVEKISKLNENFRGIIREIRSIKLHVLWRNGASGMPSRHRRFVGRSKTYHIVSTLSPLKIVDTQIMNYVIPNMVFPLYSYPNGVNLFYFVNKSRELLTAEMNLWLKFTPSTRNIKFQPTTKNRGIHNLEICSNTLSSNESCVSVQVIVISSSPQVHQIHIREGRNDYIINYTLPLVWFRPQKVIKSSQIQITRVKASIPISWGNHNSLLFLNISSIEGTVLEFMVDVLVNNKTFVQLELMMPLMSLAKSRAIIYQFRSSITWLKYPFNVPKILILELNSFLNTMATRISQLFVGNSRVSILPLQIFRDNFDSIYIQRRDFTFDWTFFVNSELPKSCLISPESIVKSFEKLSTKNVINFNTSAIVSKSTSGCGLMRQALQTTSLPITRKRSTTGPLKTPTVRTDFQWRPIRIPDSKLFVECGIIFQCLLPAAIRGIQEMFITPVVFTGPKPDWIGFSNNNKSLVGVIAKTICPKREFRFMINGSNYKKQVIVNWTLIIEISTPSSSQDQKFQIDMAMISIITFDVIQIIKTIKELKRYTQLDCEEEISCKYNISLVRPPTKNDETIHMSLEILDYSRVCPQILGIFLRNKLIETPQRPNSPNPQLKRIFYRYGIGQLNFVSFQLRGKCENKRIFPPDLGEKIIFNNIPYLISLKSFHEFYNSSVELEISNISSNGIAYDSYMNWIKIKNKINDSSILYILASTEHTRSHPYIVELTVNPGKRHKMLLPKISFQVKNLMHHPSFIPYIRELNHQISIDVTTNVIIEDTIMPLDITLEVAALADNYMRPSCQNASSLDCGADILIFLNSVIETQEGSNINYNLSSVQLLNDGNST 1020

HSP 2 Score: 103.99 bits (258), Expect = 4.801e-22
Identity = 47/54 (87.04%), Postives = 48/54 (88.89%), Query Frame = 2 
Query: 3509 NSSTLKIQDYPQVIFQSDTDTYSPPSKPLILQNEKPPQPLPDDEDDYDGILIPN 3670
            NS+     DYP VIFQSDTDTYSPPSKPLILQNEKPPQPLPDDEDDYDGILIPN
Sbjct: 1018 NSTGSAKTDYPPVIFQSDTDTYSPPSKPLILQNEKPPQPLPDDEDDYDGILIPN 1071
[Close]
BLAST of SMED30005071 vs. Planmine SMEST
Match: SMESG000026871.1 (SMESG000026871.1)

HSP 1 Score: 1966.04 bits (5092), Expect = 0.000e+0
Identity = 997/999 (99.80%), Postives = 997/999 (99.80%), Query Frame = 2 
Query:   59 MKSFFIIVWITLIIPIFAIKTSVKDFKVYTGVIFNFSAPNFIYNNRMSWLQASNQFISGLALPSMAGMEIPLTGRHGMCYQLSVLSGHQLWTRNTLADGNKCAHLLESNIIVIIRVTKRNVSALGVSDRVGLVSSICRTVCLSDFQHVVLTTPEWILSSEILAFNQSIRQDSFYFVSRVCCRYETVESVVEKISKLNENFRGIIREIRSIKLHVPWRNGASGMPSRHRRFVGRSKTYHIVSTLSPLKIVDTQIMNYVIPNMVFPLYSYPNGVNLFYFVNKSRELLTAEMNLWLKFTPSTRNIKFQPTTKNRGIHNLEICSNTLSSNEXXXXXXXXXXXXXXXXXXXHIREGRNDYIINYTLPLVWFRPQKVIKSSQIQITRVKASIPISWGNHNSLLFLNISSIEGTVLEFMVDVLVNNKTFVQLELMMPLMSLAKSRAIIYQFRSSITWLKYPFNVPKILILELNSFLNTMATRISQLFVGNSRVSILPLQIFRDNFDSIYIQRRDFTFDWTFFVNSELPKSCLISPESIVKSFEKLSTKNVINFNTSAIVSKSTSGCGLMRQALQTTSLPITRKRSTTGPLKTPTVRTDFQWRPIRIPDSKLFVECGIIFQCLLPAAIRGIQEMFITPVVFTGPKPDWIGFSNNNKSLVGVIAKTICPKREFRFMINGSNYKKQVIVNWTLIIEISTPSSSQDQKFQIDMAMISIITFDVIQIIKTIKELKRYTQLDCEEEISCKYNISLVRPPTKNDETIHMSLEILDYSRVCPQILGIFLRNKLIETPQRPNSPNPQLKRIFYRYGIGQLNFVSFQLRGKCENKRIFPPDLGEKIIFNNIPYLISLKSFHEFYNSSVELEISNISSNGIAYDSYMXXXXXXXXXXDSSILYILASTEHTRSHPYIVELTVNPGKRHKMLLPKISFQVKNLMHHPSFIPYIRELNHQISIDVTTNVIIEDTIMPLDITLEVAALADNYMRPSCQNASSLDCGADILIFLNSVIETQ 3055
            MKSFFIIVWITLIIPIFAIKTSVKDFKVYTGVIFNFSAPNFIYNNRMSWLQASNQFISGLALPSMAGMEIPLTGRHGMCYQLSVLSGHQLWTRNTLADGNKCAHLLESNIIVII VTKRNVSALGVSDRVGLVSSICRTVCLSDFQHVVLTTPEWILSSEILAFNQSIRQDSFYFVSRVCCRYETVESVVEKISKLNENFRGIIREIRSIKLHV WRNGASGMPSRHRRFVGRSKTYHIVSTLSPLKIVDTQIMNYVIPNMVFPLYSYPNGVNLFYFVNKSRELLTAEMNLWLKFTPSTRNIKFQPTTKNRGIHNLEICSNTLSSNESCVSVQVIVISSSPQVHQIHIREGRNDYIINYTLPLVWFRPQKVIKSSQIQITRVKASIPISWGNHNSLLFLNISSIEGTVLEFMVDVLVNNKTFVQLELMMPLMSLAKSRAIIYQFRSSITWLKYPFNVPKILILELNSFLNTMATRISQLFVGNSRVSILPLQIFRDNFDSIYIQRRDFTFDWTFFVNSELPKSCLISPESIVKSFEKLSTKNVINFNTSAIVSKSTSGCGLMRQALQTTSLPITRKRSTTGPLKTPTVRTDFQWRPIRIPDSKLFVECGIIFQCLLPAAIRGIQEMFITPVVFTGPKPDWIGFSNNNKSLVGVIAKTICPKREFRFMINGSNYKKQVIVNWTLIIEISTPSSSQDQKFQIDMAMISIITFDVIQIIKTIKELKRYTQLDCEEEISCKYNISLVRPPTKNDETIHMSLEILDYSRVCPQILGIFLRNKLIETPQRPNSPNPQLKRIFYRYGIGQLNFVSFQLRGKCENKRIFPPDLGEKIIFNNIPYLISLKSFHEFYNSSVELEISNISSNGIAYDSYMNWIKIKNKINDSSILYILASTEHTRSHPYIVELTVNPGKRHKMLLPKISFQVKNLMHHPSFIPYIRELNHQISIDVTTNVIIEDTIMPLDITLEVAALADNYMRPSCQNASSLDCGADILIFLNSVIETQ
Sbjct:    1 MKSFFIIVWITLIIPIFAIKTSVKDFKVYTGVIFNFSAPNFIYNNRMSWLQASNQFISGLALPSMAGMEIPLTGRHGMCYQLSVLSGHQLWTRNTLADGNKCAHLLESNIIVIIGVTKRNVSALGVSDRVGLVSSICRTVCLSDFQHVVLTTPEWILSSEILAFNQSIRQDSFYFVSRVCCRYETVESVVEKISKLNENFRGIIREIRSIKLHVLWRNGASGMPSRHRRFVGRSKTYHIVSTLSPLKIVDTQIMNYVIPNMVFPLYSYPNGVNLFYFVNKSRELLTAEMNLWLKFTPSTRNIKFQPTTKNRGIHNLEICSNTLSSNESCVSVQVIVISSSPQVHQIHIREGRNDYIINYTLPLVWFRPQKVIKSSQIQITRVKASIPISWGNHNSLLFLNISSIEGTVLEFMVDVLVNNKTFVQLELMMPLMSLAKSRAIIYQFRSSITWLKYPFNVPKILILELNSFLNTMATRISQLFVGNSRVSILPLQIFRDNFDSIYIQRRDFTFDWTFFVNSELPKSCLISPESIVKSFEKLSTKNVINFNTSAIVSKSTSGCGLMRQALQTTSLPITRKRSTTGPLKTPTVRTDFQWRPIRIPDSKLFVECGIIFQCLLPAAIRGIQEMFITPVVFTGPKPDWIGFSNNNKSLVGVIAKTICPKREFRFMINGSNYKKQVIVNWTLIIEISTPSSSQDQKFQIDMAMISIITFDVIQIIKTIKELKRYTQLDCEEEISCKYNISLVRPPTKNDETIHMSLEILDYSRVCPQILGIFLRNKLIETPQRPNSPNPQLKRIFYRYGIGQLNFVSFQLRGKCENKRIFPPDLGEKIIFNNIPYLISLKSFHEFYNSSVELEISNISSNGIAYDSYMNWIKIKNKINDSSILYILASTEHTRSHPYIVELTVNPGKRHKMLLPKISFQVKNLMHHPSFIPYIRELNHQISIDVTTNVIIEDTIMPLDITLEVAALADNYMRPSCQNASSLDCGADILIFLNSVIETQ 999

HSP 2 Score: 104.76 bits (260), Expect = 2.195e-22
Identity = 48/56 (85.71%), Postives = 48/56 (85.71%), Query Frame = 2 
Query: 3503 FFNSSTLKIQDYPQVIFQSDTDTYSPPSKPLILQNEKPPQPLPDDEDDYDGILIPN 3670
            F NS      DYP VIFQSDTDTYSPPSKPLILQNEKPPQPLPDDEDDYDGILIPN
Sbjct:  991 FLNSVIETQADYPPVIFQSDTDTYSPPSKPLILQNEKPPQPLPDDEDDYDGILIPN 1046
[Close]
BLAST of SMED30005071 vs. Planmine SMEST
Match: SMESG000045996.1 (SMESG000045996.1)

HSP 1 Score: 253.062 bits (645), Expect = 2.431e-68
Identity = 265/1049 (25.26%), Postives = 473/1049 (45.09%), Query Frame = 2 
Query:  785 LSPLKIVDTQIMNYVIPNMVFPLYSYPNGVNLFYFVNKSRELLTAEMNLWLKFTPSTRNIKFQPTTKNRGIHNLEICSNTLSSNEXXXXXXXXXXXXXXXXXXXHIREGRNDYIINYTLPLVWFRPQKVIKSSQIQITRVKASIPISWGNHNSLLFLNISSIEGTVLEFMVDVLVNNKTFVQLELMMPLMSLAKSRAI-------IYQFRSSITW-LKYPFNVPKI--LILELNSFLNTMATRISQLFVGNSRVSILPLQIFRDNFDSIYIQRRD------FTFDWTFFVNSEL--------PKSCLISPESIVKSFEKLSTKNVINFNT--SAIVSKS------TSGCGLMRQALQTTSLPITRKRSTTGPLKTPTVRTDFQWRPIRIPDSKLFVECGIIFQCLLPAAI----RGIQEMFITPVVFTGPKPDWIGFSNNNKSLVGVIAKTICPKR--EFRFMINGSNYKKQVIVNWTLII-EISTPSSSQDQKFQIDMAMISIITFDVIQIIKTIKELKRYTQLDCEEEISCKYNISLV---------RPPTKNDETIHMSLEILDYS-RVCPQILGIFLRNKLIETP--QRPNSPNPQLKRIFYRYGIGQLNFVSFQLRGKCENKRIFPPDLGEKIIFNNIPYLISLKSFHEFYNSSVELEISNISSNGIAYDSYMXXXXXXXXXXDSSILYILASTEHTRSHPYIVELTVNPGKRHKMLLPKISFQVKNLMHHPSFIPYIRELNHQISIDVTTNVIIEDTIMPLDITLEVAALADNYMRPSC-------QNASSLDCGADILIFLNSVIETQEGSNINYKLSSVQLL-----------NDGNSTEISDVMNQKLKCPIKKLSRMEVKLKR------------AFYEYRQVLNNNSNISKAWIIDFMKVIYMGPCVHSETAYVKINEDIPPV-RKDVPKENKIYFENTQHMFLMATVIPAASFICITLILGITTACLLSRRNRK-----KQFFNSSTLKIQD--YPQVIFQSDTDTYSPPSKPLILQNEKPPQPLPDDEDDYDGILI 3664
            L P+K+   QIMNYVIP   F    + + + +  F  + + +++ +   W+ +  + +NI+  P   + G   L+IC+        C S+ + V    PQ HQI++ +   DYII +T+PL WF    V K   + I +   + P  W    +L  L+++S+EG ++E  +  L+ N++ + + L +P++++ + +         +++FR  I    K  FN+     L+ +L  ++           V + ++  + +QIF      ++  ++         FDW F+  +EL        PK  L+  E + +SF      NV         I S S      T     +++  +TT   +  K +T   +   T    FQ+       +   V  GI F+  +          I+EM +        +P WI  S +N  L G+  K    +   +FRF+I   N + Q  V + +I+      + S + K ++ +   ++   DV    K + +L +Y + +CE    C  +++L           P + +       + +L  + ++CP++  I    K I T    +  +PN  LK++F   G+G++      L G C+  ++ PPDLG+  ++  IP+  SL+ F  FYNS+V   I +    G  Y + + + +  +  NDS+ L  LA   H +S PY++EL V+    HK++ P+I+ +VK LM H SF+P+ ++ NHQI +++     I      L   +  +++ D Y R +C       +N     CGA+IL     +  ++    I +K + ++ L           N GN  + S        CP+ +L ++E  L              +  EY Q     S + K   I+F    Y+G C   +       E +  + RK+     K   ++++ MFLMAT++P  SFI I+L +G+  AC L +RN+K        F+S+   ++    P ++      +Y PPS+PLIL +EKPP   PD   + + +LI
Sbjct:  292 LPPIKMHALQIMNYVIPENTFIDKEFKSLLRIKVFSIEDK-IVSNDPTKWISYNQNDQNIRINPKLTDIGETVLKICAYNAFGGYICQSMSISVSPPPPQDHQIYVSKQNKDYIIKHTVPLAWFNRFGVRKRKDVLIIKATGNSPFDWNETGNLEILDVASMEGRLIEINLLTLIKNESKIYIHLTLPVVAINRQKLATGPLYRSVFKFREKIQANSKTVFNLTDTWKLLKDLEGYV-----------VKSLKIPKIKIQIFTPIKSPLFFDKKQGNKENLLVFDWFFY--NELSVSTFCNNPKLDLLDQELLFRSFSYFFMVNVTILENRFGGICSFSVDPNPVTKDLSDIQEVKRTTLSSVDLKLATELEIINKTF-PKFQY-------THFTVTAGIPFKSYVLRRTSLDHNNIKEMRLETSSGIENEP-WIALSASNDFLYGLPLKKHVRESAYKFRFIIKLKNSQTQFKVTFQVIVVHYDLKAMSMNHKIKLSVKTENL-NIDVQYRWKLVTQLDKYVRENCEAMNDCGKDVALWDVNSIQAADNPSSSSVSIEISYISLLSKNNKICPKLSLIRFHEKYINTAINNKETTPNFALKQVFTVSGLGEIIGCQIILTGICQGMKLQPPDLGQITVYTMIPFYESLQKFRVFYNSTVWFSIDS----GNPYKNKLMYNEWISVNNDSTALVGLAMHVHAKSDPYLIELVVHSNTIHKIMSPRIAIRVKRLMEHQSFLPFFQQPNHQIIVNIRPTSRINPKNDFLSFKVLFSSIMDQYFRSNCIRTGFTIKNLPFPPCGANIL--YRRIFNSENMETITFKFNLIRELTYIKPVDSSPNNAGNGLKSS--------CPVDQLIKIERSLIGESGSPTKLGILPSVNEYFQ----KSKLGKIVDINFE---YLGACFQQQNHRFSKIEVLDEINRKNTHPTLKKVNDDSRQMFLMATIVPTCSFIIISLCVGLMVACCLQKRNQKFIRSMNSHFSSAEFAMRGGTSPIILAGEYQHSYMPPSRPLILPHEKPPVSPPDYIAENNSVLI 1295
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BLAST of SMED30005071 vs. Planmine SMEST
Match: SMESG000020071.1 (SMESG000020071.1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.600e-11
Identity = 72/277 (25.99%), Postives = 125/277 (45.13%), Query Frame = 2 
Query: 2864 ELNHQISID---VTTNVIIEDTIMPLDITLEVAALADNYMRPSCQNASSL----DCGA--DILIF-LNSVIETQEGSNINYKLSSV-QLLNDGNSTEISDVMN-QKLKCPIKKLSRMEV--------------KLKRAFYEYRQVLNNNSNISKAWIIDFMKVIYMGPCVHSETAYVKINEDIPPVRKDVPKENKIYFENTQHMFLMATVIPAASFICITLILGITTACLLSRRNRKKQFFNSSTLKIQDYPQVIFQSDTDTYS-PPSKPLILQNEK 3613
            +LNH++++    ++   + ++ I  LD+  +VA+  + Y+RP C  +++     +C    D+++F +  V  +Q    I + L S+ Q  +     EI    N ++ +CP +KL +++               KLK     Y  V     N+  A      ++  +GPC++     +  NE   P+ +  P       E+ Q MFL+ TVIP  +F    L + +  A  + RRN       S   ++     VI   + D  S PPSKPLIL +EK
Sbjct: 1049 KLNHKVTMQLEFISIAPLGDNMITGLDLRWKVASALETYIRPQCTISTTAVDIQECALRFDVILFSIERVTNSQVLFEIKWSLRSLLQQTSYKKKREIYSTSNYRQYECPREKLLKLKSMLFSEKDNRLEPLPKLKIHLKTYAGV-----NLKSA------QLKQLGPCIN-----INNNEPETPLFQTKPSGQ----EDGQKMFLITTVIPVCAFTICILFVALMIALCMKRRNYSGYMKASQNSQLGPGSPVILPDEIDRSSYPPSKPLILPHEK 1305
The following BLAST results are available for this feature:
BLAST of SMED30005071 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005071 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005071 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005071 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005071 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005071 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005071 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005071 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005071 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005071 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005071 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005071 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005071 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30005071 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000026871.10.000e+099.71SMESG000026871.1[more]
SMESG000026871.14.801e-2299.71SMESG000026871.1[more]
SMESG000026871.12.195e-2299.80SMESG000026871.1[more]
SMESG000045996.12.431e-6825.26SMESG000045996.1[more]
SMESG000020071.18.600e-1125.99SMESG000020071.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30005071 ID=SMED30005071|Name=SMED30005071|organism=Schmidtea mediterranea sexual|type=transcript|length=3757bp
GTTCATTAACATATAAGAGAATGCCCCGAGTTTTACAAATTAATATCAAA
CAGCAATTATGAAATCATTTTTCATAATTGTTTGGATAACTTTAATTATT
CCGATTTTCGCCATCAAAACCTCAGTAAAAGATTTCAAAGTTTACACTGG
AGTTATTTTCAATTTTTCCGCTCCAAATTTCATTTACAATAATAGGATGA
GCTGGCTGCAGGCGTCAAATCAATTCATTTCTGGGCTAGCCCTGCCCTCG
ATGGCTGGGATGGAGATTCCATTGACGGGGAGACATGGGATGTGTTATCA
ATTGTCTGTCCTCTCTGGACACCAGCTCTGGACTCGGAACACACTGGCAG
ACGGCAACAAGTGCGCACATCTATTGGAATCGAACATAATAGTGATAATT
AGAGTGACAAAGAGAAATGTATCGGCTCTCGGTGTCAGTGATCGGGTCGG
ATTGGTATCGAGCATATGTCGCACTGTCTGCTTGTCAGATTTCCAACACG
TGGTGCTGACAACGCCAGAATGGATTCTATCGTCAGAAATATTGGCATTT
AATCAGAGTATCCGACAAGATTCGTTTTACTTTGTTTCAAGGGTTTGTTG
CCGGTATGAAACAGTCGAAAGCGTTGTTGAAAAGATTTCAAAACTAAATG
AAAATTTCCGTGGAATAATCAGAGAAATTCGATCTATTAAGTTGCATGTA
CCGTGGAGAAACGGTGCCTCTGGCATGCCTTCTAGACACAGGCGATTTGT
AGGTCGTTCTAAGACTTATCACATTGTTTCAACTTTATCTCCCCTGAAAA
TTGTCGACACTCAAATCATGAATTACGTAATCCCGAACATGGTTTTCCCA
TTATATTCTTATCCTAATGGAGTGAACCTGTTTTATTTTGTTAACAAATC
CAGAGAATTATTAACAGCGGAAATGAATTTGTGGCTTAAGTTTACCCCTT
CAACTAGAAATATCAAATTCCAACCGACGACTAAAAATCGAGGAATTCAT
AATCTAGAAATTTGCAGCAATACTTTGTCTTCCAACGAGAGTTGTGTTTC
TGTTCAAGTTATTGTCATTTCATCAAGTCCACAAGTTCATCAAATTCATA
TTCGAGAAGGTCGGAATGATTATATTATCAACTACACACTTCCGTTGGTT
TGGTTCCGACCTCAAAAGGTCATCAAGAGCAGTCAGATTCAAATTACTAG
AGTTAAAGCAAGTATTCCGATTTCATGGGGAAATCACAACAGCTTGTTAT
TTCTGAACATTTCCTCGATTGAAGGCACAGTTCTTGAATTCATGGTGGAT
GTTTTGGTCAACAATAAAACATTTGTTCAACTTGAATTGATGATGCCTTT
AATGTCATTAGCAAAGTCTAGAGCTATTATATACCAATTCCGATCGAGTA
TAACATGGTTGAAATACCCCTTTAATGTTCCGAAGATTCTCATATTGGAA
TTGAACTCCTTCTTGAATACAATGGCAACGAGAATTTCCCAATTATTTGT
AGGAAATTCTCGGGTTAGCATTTTACCATTGCAGATATTCCGAGATAATT
TCGATTCAATTTACATTCAACGAAGAGATTTCACCTTCGATTGGACGTTC
TTTGTGAATTCCGAGCTGCCGAAATCGTGCCTAATCAGTCCAGAATCTAT
AGTGAAATCATTTGAGAAATTGTCAACAAAAAATGTTATCAATTTCAACA
CATCAGCAATTGTAAGCAAATCAACTTCCGGGTGTGGCCTAATGAGACAA
GCTCTCCAGACGACTTCTTTGCCGATAACTCGAAAAAGATCGACAACCGG
CCCGTTAAAAACTCCTACAGTACGTACAGATTTCCAATGGAGGCCGATCC
GGATTCCTGATTCGAAATTGTTTGTCGAGTGTGGCATCATTTTCCAGTGT
CTGCTACCAGCTGCCATTAGGGGAATTCAGGAAATGTTCATTACACCAGT
CGTCTTCACTGGACCGAAACCAGACTGGATAGGATTTTCAAATAATAACA
AAAGCCTTGTTGGAGTTATTGCGAAAACCATTTGTCCAAAACGAGAGTTC
CGATTTATGATAAATGGCTCAAATTATAAGAAGCAGGTCATCGTAAATTG
GACATTAATAATTGAAATATCTACACCAAGTTCTTCTCAAGATCAAAAGT
TCCAAATTGATATGGCTATGATAAGCATAATCACATTCGATGTTATTCAG
ATCATTAAAACAATAAAGGAGTTGAAACGGTACACTCAGTTGGATTGTGA
GGAGGAAATAAGCTGTAAATATAATATTTCTCTTGTTCGGCCCCCTACTA
AAAATGATGAAACCATTCACATGAGCCTCGAAATCTTGGATTATTCTAGG
GTGTGTCCACAGATTCTTGGAATCTTTCTTCGCAATAAACTAATTGAAAC
TCCTCAACGACCCAATTCACCAAATCCTCAGCTAAAAAGAATTTTCTATC
GGTATGGGATAGGCCAGCTAAACTTTGTCAGCTTCCAACTGCGAGGAAAA
TGTGAAAATAAAAGGATTTTCCCTCCAGATCTTGGTGAAAAAATCATTTT
CAATAATATTCCTTATCTAATCTCTTTGAAATCGTTCCATGAATTCTATA
ACAGCTCAGTAGAATTGGAAATCAGCAACATTTCCTCTAATGGGATTGCA
TACGATAGCTACATGAATTGGATCAAGATCAAAAACAAGATCAACGACTC
GTCAATTCTATACATATTAGCGTCAACTGAACACACTCGCAGTCATCCAT
ATATTGTAGAACTGACGGTAAACCCCGGGAAACGACACAAGATGCTCCTC
CCGAAAATTAGTTTTCAAGTTAAAAATTTGATGCACCATCCTTCATTTAT
TCCATATATTCGCGAATTAAACCATCAAATCTCTATTGACGTCACCACGA
ACGTCATTATAGAGGATACCATAATGCCACTTGACATTACTCTAGAGGTT
GCGGCTTTAGCAGATAATTACATGCGGCCCAGCTGCCAAAATGCTTCATC
ATTAGACTGCGGTGCTGACATCTTAATATTTTTGAACTCAGTTATTGAAA
CTCAAGAAGGGAGCAATATAAATTACAAATTATCGTCAGTTCAACTTCTC
AATGATGGAAACTCAACCGAGATATCCGACGTCATGAATCAAAAATTGAA
ATGTCCAATCAAGAAGTTGAGTCGCATGGAAGTGAAGTTGAAAAGAGCAT
TCTACGAATATCGACAGGTCCTGAATAATAATAGCAACATTAGTAAAGCG
TGGATCATAGATTTCATGAAGGTTATTTATATGGGTCCATGCGTTCACTC
TGAAACAGCTTACGTGAAAATAAATGAAGATATTCCGCCCGTTCGAAAGG
ACGTTCCGAAAGAAAACAAAATATATTTTGAAAATACTCAACATATGTTT
TTGATGGCCACAGTAATTCCAGCTGCAAGTTTCATTTGCATAACCTTGAT
TCTAGGCATTACCACCGCATGTTTATTAAGTCGTCGAAATCGGAAAAAAC
AATTCTTCAACTCTTCAACTTTAAAAATCCAAGACTATCCACAGGTTATC
TTCCAATCAGACACAGACACATATTCACCCCCATCGAAACCATTAATATT
ACAAAATGAAAAGCCTCCTCAACCCCTTCCAGACGACGAGGACGACTACG
ATGGGATTCTTATTCCAAATGTGCAATCCATGAAATTCTACCGCCCAAAC
ATTTAGCAGATAAAAAAACTCGTTTAATTGAAATCTGTTTTGCATTTCAG
CTCTGAT
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protein sequence of SMED30005071-orf-1

>SMED30005071-orf-1 ID=SMED30005071-orf-1|Name=SMED30005071-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1216bp
MKSFFIIVWITLIIPIFAIKTSVKDFKVYTGVIFNFSAPNFIYNNRMSWL
QASNQFISGLALPSMAGMEIPLTGRHGMCYQLSVLSGHQLWTRNTLADGN
KCAHLLESNIIVIIRVTKRNVSALGVSDRVGLVSSICRTVCLSDFQHVVL
TTPEWILSSEILAFNQSIRQDSFYFVSRVCCRYETVESVVEKISKLNENF
RGIIREIRSIKLHVPWRNGASGMPSRHRRFVGRSKTYHIVSTLSPLKIVD
TQIMNYVIPNMVFPLYSYPNGVNLFYFVNKSRELLTAEMNLWLKFTPSTR
NIKFQPTTKNRGIHNLEICSNTLSSNESCVSVQVIVISSSPQVHQIHIRE
GRNDYIINYTLPLVWFRPQKVIKSSQIQITRVKASIPISWGNHNSLLFLN
ISSIEGTVLEFMVDVLVNNKTFVQLELMMPLMSLAKSRAIIYQFRSSITW
LKYPFNVPKILILELNSFLNTMATRISQLFVGNSRVSILPLQIFRDNFDS
IYIQRRDFTFDWTFFVNSELPKSCLISPESIVKSFEKLSTKNVINFNTSA
IVSKSTSGCGLMRQALQTTSLPITRKRSTTGPLKTPTVRTDFQWRPIRIP
DSKLFVECGIIFQCLLPAAIRGIQEMFITPVVFTGPKPDWIGFSNNNKSL
VGVIAKTICPKREFRFMINGSNYKKQVIVNWTLIIEISTPSSSQDQKFQI
DMAMISIITFDVIQIIKTIKELKRYTQLDCEEEISCKYNISLVRPPTKND
ETIHMSLEILDYSRVCPQILGIFLRNKLIETPQRPNSPNPQLKRIFYRYG
IGQLNFVSFQLRGKCENKRIFPPDLGEKIIFNNIPYLISLKSFHEFYNSS
VELEISNISSNGIAYDSYMNWIKIKNKINDSSILYILASTEHTRSHPYIV
ELTVNPGKRHKMLLPKISFQVKNLMHHPSFIPYIRELNHQISIDVTTNVI
IEDTIMPLDITLEVAALADNYMRPSCQNASSLDCGADILIFLNSVIETQE
GSNINYKLSSVQLLNDGNSTEISDVMNQKLKCPIKKLSRMEVKLKRAFYE
YRQVLNNNSNISKAWIIDFMKVIYMGPCVHSETAYVKINEDIPPVRKDVP
KENKIYFENTQHMFLMATVIPAASFICITLILGITTACLLSRRNRKKQFF
NSSTLKIQDYPQVIFQSDTDTYSPPSKPLILQNEKPPQPLPDDEDDYDGI
LIPNVQSMKFYRPNI*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000418head
Vocabulary: INTERPRO
TermDefinition
IPR008465DAG1_C
Vocabulary: cellular component
TermDefinition
GO:0016010dystrophin-associated glycoprotein complex
Vocabulary: biological process
TermDefinition
GO:0007016cytoskeletal anchoring at plasma membrane