SMED30004994

Overview
NameSMED30004994
Smed IDSMED30004994
Length (bp)1685
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30004994 (SMED30004994) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30004994 (SMED30004994) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30004994

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 8

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30004994h1SMcG0005205 SmedASXL_013529SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
pigment cellSMED30004994h1SMcG0005205 SmedASXL_013529SmedAsxl_ww_GCZZ01PMID:29158443
He et al., 2017		whole organism asexual adult RNA-sequencing evidence
nervous systemSMED30004994h1SMcG0005205 dd_Smed_v4_19713_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30004994h1SMcG0005205 dd_Smed_v4_19713_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30004994h1SMcG0005205 dd_Smed_v4_19713_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30004994h1SMcG0005205 dd_Smed_v4_19713_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30004994h1SMcG0005205 dd_Smed_v4_17602_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30004994h1SMcG0005205 dd_Smed_v4_23051_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30004994 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.018014:3260..11152 -6403
Homology
[Close]
BLAST of SMED30004994 vs. Planmine SMEST
Match: SMESG000050292.1 (SMESG000050292.1)

HSP 1 Score: 824.313 bits (2128), Expect = 0.000e+0
Identity = 409/442 (92.53%), Postives = 414/442 (93.67%), Query Frame = 2 
Query:   53 MTFQIYFLLTSFNNLFNIILATYIYQEFDNVSLKRDNLIFNVYLQTFKGVLLYGLDSENKLLIKVNREMEFRTIHIIFNSEEIGIKLTKTTLKFCSLNEDVYLDFTLRLSRSELTIKCRNMTWSYKLRQNTFKDEFDLYPQPNHDFKKKKKLFIWMGNIGPYIGRDSAHYKPLQNQLYGCTDKFTINGKGFHLKKRSGNQFIFPCDINYQETEYKGKNVTKRLSTIKMYNCTHYSMNPLYCQTNPLDFSEKTHSYHKQSMSSEIDYFRIEWKNSASKNSINYCLLEMKYKNEMIILLFLDQDGSVSVESKNSNDPNIQINLKIFMPNFKRNVLLIFTTNIDLIIKVFDGQQIQTHIYHINSLLSLINVGFCHVNYLRNFAGKMRFRYNSLDWRPLINENGKSTPNPISKGTTSLNYIYSVL---ASFIIFLAFIVYIRKRHN 1369
            MTFQIYFLLTSFNNLFNIILATYIYQEFDNVSLKRDNLIFNVYLQTFKGVLLYGLDSENKLLIKVNREMEFRTIHIIFNSEEIGIKLTKTTLKFCSLNEDVYLDFTLRLSRSELTIKCRNMTWSYKLRQNTFKDEFDLYPQPNHDFKKKKKLFIWMGNIGPYIGRDSAHYKPLQNQLYGCTDK             SGNQFIFPCDINYQETEYKGKNVTKRLSTIKMYNCTHYSMNPLYCQTNPLDFSEKTHSYHKQSMSSEIDYFRIEWKNSASKNSINYCLLEMKY NEMIILLFLDQDG VSVESKNSNDPNIQINLKIFMPNFKRNVLLIFTTNIDLIIKV+DGQQIQTHIYHINSLLSLINVGFCHVNYLRNFAGKMRFRYNSLDWRPLINENGKSTPNPISKGTTSLNYIYS+L     FI+ L    Y  ++ N
Sbjct:    1 MTFQIYFLLTSFNNLFNIILATYIYQEFDNVSLKRDNLIFNVYLQTFKGVLLYGLDSENKLLIKVNREMEFRTIHIIFNSEEIGIKLTKTTLKFCSLNEDVYLDFTLRLSRSELTIKCRNMTWSYKLRQNTFKDEFDLYPQPNHDFKKKKKLFIWMGNIGPYIGRDSAHYKPLQNQLYGCTDK-------------SGNQFIFPCDINYQETEYKGKNVTKRLSTIKMYNCTHYSMNPLYCQTNPLDFSEKTHSYHKQSMSSEIDYFRIEWKNSASKNSINYCLLEMKYNNEMIILLFLDQDGYVSVESKNSNDPNIQINLKIFMPNFKRNVLLIFTTNIDLIIKVYDGQQIQTHIYHINSLLSLINVGFCHVNYLRNFAGKMRFRYNSLDWRPLINENGKSTPNPISKGTTSLNYIYSILFGIGVFILLLCLSNYYCRKEN 429
[Close]
BLAST of SMED30004994 vs. Planmine SMEST
Match: SMESG000050295.1 (SMESG000050295.1)

HSP 1 Score: 323.553 bits (828), Expect = 2.448e-104
Identity = 207/517 (40.04%), Postives = 283/517 (54.74%), Query Frame = 2 
Query:   56 TFQIYFLLTSFNNLFNIILATYIYQEFDNVSLKRDNLIFNVYLQTFKGVLLYGLDSENKLLIKVNREMEFRTIHIIFNSEEIGIKLTKTTLKFCSLNEDVYLDFTLRLSRSELTIKCRNMTWSYKLRQNTFKDEFDLYPQPNHDFKKKKKLFIWMGNIGPYIGRDSAHYKPLQNQLYGCTDKFTINGKGFHLKKRSGNQFIFPCDINYQETEYKGKNVTKRLSTIKMYNCTHYSMNPLYCQTNPLDFSEKTHSYHKQSMSSEIDYFRIEWKNSASKNSINYCLLEMKYKNEMIILLFLDQDGSVSVESKNSNDPNIQINLKIFMPNFKRNVLLIFTTNIDLIIKVFDGQQIQTHIYHINSLLSLINVG-FCHVNYLRNFAGKMRFRYNSLDWRPLINENGKSTPNPISKGTTSLN---YIYSVLASFIIFLAFIVYIRKRHNGKEANEIINNQNREDISEDENNVYGIYSHNQNPTEEDRQIVIGNVASSSLGVYDIYIPQIISNEYNVITESETNG 1594
            + ++  L  ++ N+F  + A+YIY+E          L F +Y+    G++ Y  D EN + +K++ +     + + +N +      T   +  CS   ++++ F   L  S + I+C N +    L+  T KD F  +P+P      +K LFIWMGNIG YIG     Y PL+ Q++GC D   ++ K   L+++ G  F+  CDI Y E      N  +  ++ KMY+C+  S+N  YC        EK     K S    I   RI+W         NYCLLE+  KN  I++L +D+   + +  K+S    + IN  +   N   N LL+     +  +KV  G+    +   + S   +I VG + H N    F G +  R   + +         S+ NP       L     I+ VLASF+I LAFIVYIRKRHNGKEANEIINNQNRE+ISEDENNVYGIYSHNQNPTEEDRQIVIGNVASSSLGVYDIYIPQIISNEYNVIT+SETNG
Sbjct:    3 SVKLILLFITYLNIFLWLNASYIYKELAGTIADHLGLEFRIYILNGSGIIFYSFDVENDIFVKIDVDRPKPELIVAYNQKIPSKISTMNEICGCSACFNIFMTFKFHLDLSLIDIECANKSNIILLKNTTDKDSFKFFPRPKSYKSSEKILFIWMGNIGKYIGYSGMKYLPLKAQIFGCLDYIKVDKKYVKLERQEGVSFLNSCDILYNEKVCYKSNCWQNKNSYKMYDCSVASLNTKYCNITFSRHYEKEFDSRKNS--ERIKLMRIDWIRDQHIMK-NYCLLEIILKNGTILMLHIDRHNHLRMNIKHSK-TKLLINTNL---NKISNSLLVNLDPSNFSVKVSFGEGRVEYRDEMTSEYVIITVGKWQHSNIYPEFLGNISIRLEMILF---------SSQNPSRYSILDLKEIFIIFLVLASFLILLAFIVYIRKRHNGKEANEIINNQNREEISEDENNVYGIYSHNQNPTEEDRQIVIGNVASSSLGVYDIYIPQIISNEYNVITDSETNG 503
[Close]
BLAST of SMED30004994 vs. Planmine SMEST
Match: SMESG000050295.1 (SMESG000050295.1)

HSP 1 Score: 203.756 bits (517), Expect = 8.969e-60
Identity = 132/258 (51.16%), Postives = 159/258 (61.63%), Query Frame = 2 
Query:  833 SSEIDYFRIEWKNSASKNSINYCLLEMKYKNEMIILLFLDQDGSVSVESKNSNDPNIQINLKIFMPNFKRNVLLIFTTNIDLIIKVFDGQQIQTHIYHINSLLSLINVG-FCHVNYLRNFAGKMRFRYNSLDWRPLINENGKSTPNPISKGTTSLN---YIYSVLASFIIFLAFIVYIRKRHNGKEANEIINNQNREDISEDENNVYGIYSHNQNPTEEDRQIVIGNVASSSLGVYDIYIPQIISNEYNVITESETNG 1594
            S  I   RI+W         NYCLLE+  KN  I++L +D+   + +  K+S    + IN  +   N   N LL+     +  +KV  G+    +   + S   +I VG + H N    F G +  R   + +         S+ NP       L     I+ VLASF+I LAFIVYIRKRHNGKEANEIINNQNRE+ISEDENNVYGIYSHNQNPTEEDRQIVIGNVASSSLGVYDIYIPQIISNEYNVIT+SETNG
Sbjct:  150 SERIKLMRIDWIRDQHIMK-NYCLLEIILKNGTILMLHIDRHNHLRMNIKHSK-TKLLINTNL---NKISNSLLVNLDPSNFSVKVSFGEGRVEYRDEMTSEYVIITVGKWQHSNIYPEFLGNISIRLEMILF---------SSQNPSRYSILDLKEIFIIFLVLASFLILLAFIVYIRKRHNGKEANEIINNQNREEISEDENNVYGIYSHNQNPTEEDRQIVIGNVASSSLGVYDIYIPQIISNEYNVITDSETNG 393
[Close]
BLAST of SMED30004994 vs. Planmine SMEST
Match: SMESG000050289.1 (SMESG000050289.1)

HSP 1 Score: 183.726 bits (465), Expect = 3.148e-51
Identity = 150/514 (29.18%), Postives = 245/514 (47.67%), Query Frame = 2 
Query:   14 IKYYLFKIIMK*IMTFQIYFLLTSFNNLFNIILATYIYQEFDNVSLKRDNLIFNVYLQTFKGVLLYGLDSENKLLIKVNREMEFRTIHIIFNSEEIGIKLTKTTLKFCSLNEDVYLDFTLRLSRSELTIKCRNMTWSYKLRQNTFKDEFDLYPQPNHDFKKKKKLFIWMGNIGPYIGRDSAHYKPLQNQLYGCTDKFTINGKGFHLKKRSGNQFIFPCDINYQETEYKGKNVTKRLSTIKMYNCTHYSMNPLYCQTNPLDFSEKTHSYHKQSMSSEIDYFRIEWKNSASKNSINYCLLEMKYKNEMIILLFLDQDGSVSVESKN--SNDPNIQINLKIFMPNFKRNVLLIFTTNIDLIIKVFDGQQIQTHIYHINSLLSLINVGFCHVN-YLRNFAGKMRFRYNSLDWRPLINENGKS--------TPNPISKGTTSLNYIYSVLASFIIFLAFIVYIR-------KRHNGKEANEIINNQN--REDISEDENNVYGIYSHNQNPT-EEDRQIV 1492
            +KY+LF           +  LL+ FN +F    + YIY++FD   +    + F+V+++ FKGVL Y +DS+N+LLI++N++     I   FNS      +T   L  CS   +VYL  ++ L + E+ I C       K  + T  DEF  YP P      + K + WMGNIGP+ G  +  Y  L +QL GC DKF  NGK    KK SG  F   C++ Y+E        +   +  KMY+C+  SMN  +C+T   D++    SY ++    E+ YFR++W+   +     + L+E+K K+E ++L ++D   ++ + + N  +N   +  ++K  + +  R  LLI     +  IK+ D   I T+I        LIN+G    +     F GK+ F++N   W+     NG S         PN +     S  Y+  ++   II +  I+  +       KR + K+  + I N +   E +S        +    Q+PT + D +I+
Sbjct:    5 VKYFLF-----------LSVLLSKFNGMF----SEYIYEKFDGNMVSDKGMNFSVFIKNFKGVLFYCVDSKNRLLIQINKKSTETIITFKFNSYVTSEDMTSKRLCKCSNCSNVYLQLSILLQQLEILINCNKQANVVKFNKETDSDEFSEYPTPPDYNNNQTKTYFWMGNIGPFTGSKNKIYLALTSQLSGCLDKFYFNGKNIKFKK-SGKIFQSFCEVLYKEKVCNESRCSNNETHYKMYDCSPLSMNGKHCETILSDYAIVQKSYIRKQRWKEVIYFRLDWQMEVNSKIKRFSLMEIKLKDETLLLFYIDSTRNIVMSTLNISANTDIVDFSMKSDLNH--RFTLLIILGESETTIKLNDCSNILTYIKKNIFEFVLINIGTIQSDPSFSLFEGKINFQFNPKYWKI---SNGNSDFFLTSTIIPNRVQPSNLSKYYLCVIVFGGIIIMLVIILRKCKFRQKMKRQSQKDKWKDIQNNSYESESVSTPSAKNLVLEPFTQSPTLDSDYEII 497
[Close]
BLAST of SMED30004994 vs. Planmine SMEST
Match: SMESG000050289.1 (SMESG000050289.1)

HSP 1 Score: 168.703 bits (426), Expect = 5.520e-46
Identity = 136/462 (29.44%), Postives = 221/462 (47.84%), Query Frame = 2 
Query:  170 FNVYLQTFKGVLLYGLDSENKLLIKVNREMEFRTIHIIFNSEEIGIKLTKTTLKFCSLNEDVYLDFTLRLSRSELTIKCRNMTWSYKLRQNTFKDEFDLYPQPNHDFKKKKKLFIWMGNIGPYIGRDSAHYKPLQNQLYGCTDKFTINGKGFHLKKRSGNQFIFPCDINYQETEYKGKNVTKRLSTIKMYNCTHYSMNPLYCQTNPLDFSEKTHSYHKQSMSSEIDYFRIEWKNSASKNSINYCLLEMKYKNEMIILLFLDQDGSVSVESKN--SNDPNIQINLKIFMPNFKRNVLLIFTTNIDLIIKVFDGQQIQTHIYHINSLLSLINVGFCHVN-YLRNFAGKMRFRYNSLDWRPLINENGKS--------TPNPISKGTTSLNYIYSVLASFIIFLAFIVYIR-------KRHNGKEANEIINNQN--REDISEDENNVYGIYSHNQNPT-EEDRQIV 1492
            F+V+++ FKGVL Y +DS+N+LLI++N++     I   FNS      +T   L  CS   +VYL  ++ L + E+ I C       K  + T  DEF  YP P      + K + WMGNIGP+ G  +  Y  L +QL GC DKF  NGK    KK SG  F   C++ Y+E        +   +  KMY+C+  SMN  +C+T   D++    SY ++    E+ YFR++W+   +     + L+E+K K+E ++L ++D   ++ + + N  +N   +  ++K  + +  R  LLI     +  IK+ D   I T+I        LIN+G    +     F GK+ F++N   W+     NG S         PN +     S  Y+  ++   II +  I+  +       KR + K+  + I N +   E +S        +    Q+PT + D +I+
Sbjct:    9 FSVFIKNFKGVLFYCVDSKNRLLIQINKKSTETIITFKFNSYVTSEDMTSKRLCKCSNCSNVYLQLSILLQQLEILINCNKQANVVKFNKETDSDEFSEYPTPPDYNNNQTKTYFWMGNIGPFTGSKNKIYLALTSQLSGCLDKFYFNGKNIKFKK-SGKIFQSFCEVLYKEKVCNESRCSNNETHYKMYDCSPLSMNGKHCETILSDYAIVQKSYIRKQRWKEVIYFRLDWQMEVNSKIKRFSLMEIKLKDETLLLFYIDSTRNIVMSTLNISANTDIVDFSMKSDLNH--RFTLLIILGESETTIKLNDCSNILTYIKKNIFEFVLINIGTIQSDPSFSLFEGKINFQFNPKYWKI---SNGNSDFFLTSTIIPNRVQPSNLSKYYLCVIVFGGIIIMLVIILRKCKFRQKMKRQSQKDKWKDIQNNSYESESVSTPSAKNLVLEPFTQSPTLDSDYEII 464
The following BLAST results are available for this feature:
BLAST of SMED30004994 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004994 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004994 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004994 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004994 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004994 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004994 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004994 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004994 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004994 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004994 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004994 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004994 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30004994 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000050292.10.000e+092.53SMESG000050292.1[more]
SMESG000050295.12.448e-10440.04SMESG000050295.1[more]
SMESG000050295.18.969e-6051.16SMESG000050295.1[more]
SMESG000050289.13.148e-5129.18SMESG000050289.1[more]
SMESG000050289.15.520e-4629.44SMESG000050289.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30004994 ID=SMED30004994|Name=SMED30004994|organism=Schmidtea mediterranea sexual|type=transcript|length=1685bp
TTAAGAAACAGTAATTAAATATTATTTATTCAAAATTATAATGAAATAAA
TTATGACATTTCAAATTTATTTCTTACTGACAAGCTTTAATAACCTTTTC
AACATAATCTTGGCCACATATATTTACCAAGAATTCGACAATGTCAGTCT
GAAGCGCGATAATTTGATCTTCAATGTTTACCTTCAAACCTTTAAAGGAG
TTCTGTTATACGGCTTGGATTCAGAAAACAAACTTTTGATAAAAGTCAAC
AGAGAGATGGAGTTTAGAACTATTCACATTATTTTCAACAGTGAAGAAAT
TGGAATAAAACTTACTAAAACGACATTAAAATTCTGTTCCTTAAACGAAG
ACGTTTATCTGGATTTTACGCTTCGGCTGTCAAGATCTGAACTGACAATC
AAATGTAGAAATATGACTTGGTCCTATAAACTTAGACAGAACACTTTTAA
AGATGAATTTGATTTATATCCGCAACCAAATCATGACTTTAAAAAAAAGA
AGAAATTATTCATATGGATGGGAAATATTGGGCCTTATATCGGTAGGGAT
TCTGCACATTACAAACCTCTTCAAAATCAACTATATGGATGCACTGATAA
GTTTACAATTAATGGTAAAGGTTTCCATTTAAAAAAAAGATCAGGAAATC
AGTTCATATTTCCATGCGATATAAACTACCAAGAAACAGAATATAAAGGT
AAAAATGTCACCAAAAGATTATCTACCATCAAAATGTACAATTGCACTCA
TTATTCAATGAACCCTCTATATTGTCAAACCAATCCATTGGACTTTTCAG
AAAAGACTCATTCTTATCACAAACAAAGTATGTCCAGCGAAATCGATTAT
TTTCGGATTGAATGGAAAAACAGTGCTTCAAAAAATTCAATAAATTACTG
TTTATTAGAAATGAAATATAAAAACGAAATGATAATTTTACTATTTCTCG
ATCAAGATGGATCTGTAAGCGTAGAGTCAAAGAATTCTAATGATCCGAAT
ATTCAAATAAATCTGAAAATATTCATGCCTAACTTTAAGAGAAATGTATT
ATTGATTTTTACTACAAACATCGATTTAATTATAAAAGTCTTTGACGGTC
AGCAGATTCAAACGCATATTTACCATATAAATTCACTACTTTCGTTGATT
AATGTTGGATTTTGTCATGTGAATTATCTTAGAAACTTTGCGGGAAAAAT
GAGGTTCAGATACAATTCCCTTGATTGGAGGCCATTGATAAACGAGAATG
GGAAATCAACGCCAAATCCTATTAGCAAAGGGACAACCAGTCTCAACTAC
ATTTATTCTGTACTTGCTTCATTCATCATTTTTTTGGCATTCATAGTTTA
TATTAGAAAACGTCATAATGGAAAGGAAGCGAATGAAATAATTAATAATC
AAAACCGTGAGGATATCAGTGAAGATGAAAATAACGTATACGGAATCTAT
TCCCACAATCAAAATCCCACAGAAGAAGATCGGCAGATTGTCATAGGAAA
TGTGGCCTCCTCAAGTCTTGGAGTCTATGATATATACATTCCCCAAATAA
TTTCCAATGAATACAATGTGATCACAGAGAGTGAAACAAATGGATAAAGA
ATATATCAATCGGACTTATAAAGATTTGACTACATTATAAAGTTTTCTTT
TATTATTTTGACCATATTTATCATTTATAAATAAA
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protein sequence of SMED30004994-orf-1

>SMED30004994-orf-1 ID=SMED30004994-orf-1|Name=SMED30004994-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=515bp
MTFQIYFLLTSFNNLFNIILATYIYQEFDNVSLKRDNLIFNVYLQTFKGV
LLYGLDSENKLLIKVNREMEFRTIHIIFNSEEIGIKLTKTTLKFCSLNED
VYLDFTLRLSRSELTIKCRNMTWSYKLRQNTFKDEFDLYPQPNHDFKKKK
KLFIWMGNIGPYIGRDSAHYKPLQNQLYGCTDKFTINGKGFHLKKRSGNQ
FIFPCDINYQETEYKGKNVTKRLSTIKMYNCTHYSMNPLYCQTNPLDFSE
KTHSYHKQSMSSEIDYFRIEWKNSASKNSINYCLLEMKYKNEMIILLFLD
QDGSVSVESKNSNDPNIQINLKIFMPNFKRNVLLIFTTNIDLIIKVFDGQ
QIQTHIYHINSLLSLINVGFCHVNYLRNFAGKMRFRYNSLDWRPLINENG
KSTPNPISKGTTSLNYIYSVLASFIIFLAFIVYIRKRHNGKEANEIINNQ
NREDISEDENNVYGIYSHNQNPTEEDRQIVIGNVASSSLGVYDIYIPQII
SNEYNVITESETNG*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000418head
PLANA:0002075pigment cell
PLANA:0003116parenchymal cell
Vocabulary: INTERPRO
TermDefinition
IPR001849PH_domain
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 412..434