28S ribosomal protein S25 mitochondrial

Overview


Name	28S ribosomal protein S25 mitochondrial
Smed ID	SMED30004940
Length (bp)	749

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of 28S ribosomal protein S25 mitochondrial (SMED30004940) t-SNE clustered cells

Violin plots show distribution of expression levels for 28S ribosomal protein S25 mitochondrial (SMED30004940) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of 28S ribosomal protein S25 mitochondrial (SMED30004940) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for 28S ribosomal protein S25 mitochondrial (SMED30004940) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30004940

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 6

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
X1 cell	SMED30004940	h1SMcG0006801	SmedASXL_013420	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
nervous system	SMED30004940	h1SMcG0006801	dd_Smed_v4_4298_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
gut	SMED30004940	h1SMcG0006801	dd_Smed_v4_4298_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30004940	h1SMcG0006801	dd_Smed_v4_4298_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30004940	h1SMcG0006801	dd_Smed_v4_4298_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30004940	h1SMcG0006801	dd_Smed_v4_4298_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018

Note: Hover over icons to view figure legend

Homology

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BLAST of 28S ribosomal protein S25 mitochondrial vs. Ensembl Human
Match: MRPS25 (mitochondrial ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:14511])

HSP 1 Score: 129.798 bits (325), Expect = 4.866e-37
Identity = 69/154 (44.81%), Postives = 107/154 (69.48%), Query Frame = 2

Query:  110 EGSKGIINTLKYLEAGKLYFKNNVKIFSMNHIPDVEISEGANNFLTWKVPQLQFKNPKVQVITYRNMAPTPFIKCYLDNAEEILIDVSFRDHNEIEDHLLKIICKTKEMLLEEEIQNQVLINPANFG-RKY-PRQCMCEIYGQVRCPSRYGRPK 565
            +G   I  TL+YL  G + FK++VK+ ++N+    E+ EGA  F+ + +PQ+Q+KNP VQ++ ++NM P+PF++ YLD+ E++L+DV  + + EI +H+ KI+ K +E L EEE + + L +PANFG RKY  R+C+CE+ GQV CPS    PK
Sbjct:    4 KGRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIRKILGKNEETLREEEEEKKQLSHPANFGPRKYCLRECICEVEGQVPCPSLVPLPK 157

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BLAST of 28S ribosomal protein S25 mitochondrial vs. Ensembl Human
Match: MRPS25 (mitochondrial ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:14511])

HSP 1 Score: 102.064 bits (253), Expect = 1.432e-26
Identity = 44/110 (40.00%), Postives = 76/110 (69.09%), Query Frame = 2

Query:  110 EGSKGIINTLKYLEAGKLYFKNNVKIFSMNHIPDVEISEGANNFLTWKVPQLQFKNPKVQVITYRNMAPTPFIKCYLDNAEEILIDVSFRDHNEIEDHLLKIICKTKEML 439
            +G   I  TL+YL  G + FK++VK+ ++N+    E+ EGA  F+ + +PQ+Q+KNP VQ++ ++NM P+PF++ YLD+ E++L+DV  + + EI +H+ KI+ K +  L
Sbjct:    4 KGRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIRKILGKNEHYL 113

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BLAST of 28S ribosomal protein S25 mitochondrial vs. Ensembl Human
Match: MRPS25 (mitochondrial ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:14511])

HSP 1 Score: 100.138 bits (248), Expect = 2.224e-26
Identity = 43/105 (40.95%), Postives = 74/105 (70.48%), Query Frame = 2

Query:  110 EGSKGIINTLKYLEAGKLYFKNNVKIFSMNHIPDVEISEGANNFLTWKVPQLQFKNPKVQVITYRNMAPTPFIKCYLDNAEEILIDVSFRDHNEIEDHLLKIICK 424
            +G   I  TL+YL  G + FK++VK+ ++N+    E+ EGA  F+ + +PQ+Q+KNP VQ++ ++NM P+PF++ YLD+ E++L+DV  + + EI +H+ KI+ K
Sbjct:    4 KGRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIRKILGK 108

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BLAST of 28S ribosomal protein S25 mitochondrial vs. Ensembl Human
Match: MRPS25 (mitochondrial ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:14511])

HSP 1 Score: 100.138 bits (248), Expect = 2.224e-26
Identity = 43/105 (40.95%), Postives = 74/105 (70.48%), Query Frame = 2

Query:  110 EGSKGIINTLKYLEAGKLYFKNNVKIFSMNHIPDVEISEGANNFLTWKVPQLQFKNPKVQVITYRNMAPTPFIKCYLDNAEEILIDVSFRDHNEIEDHLLKIICK 424
            +G   I  TL+YL  G + FK++VK+ ++N+    E+ EGA  F+ + +PQ+Q+KNP VQ++ ++NM P+PF++ YLD+ E++L+DV  + + EI +H+ KI+ K
Sbjct:    4 KGRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIRKILGK 108

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BLAST of 28S ribosomal protein S25 mitochondrial vs. Ensembl Human
Match: MRPS25 (mitochondrial ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:14511])

HSP 1 Score: 74.3294 bits (181), Expect = 2.755e-16
Identity = 32/78 (41.03%), Postives = 54/78 (69.23%), Query Frame = 2

Query:  110 EGSKGIINTLKYLEAGKLYFKNNVKIFSMNHIPDVEISEGANNFLTWKVPQLQFKNPKVQVITYRNMAPTPFIKCYLD 343
            +G   I  TL+YL  G + FK++VK+ ++N+    E+ EGA  F+ + +PQ+Q+KNP VQ++ ++NM P+PF++ YL 
Sbjct:    4 KGRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLG 81

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BLAST of 28S ribosomal protein S25 mitochondrial vs. Ensembl Celegans
Match: mrps-25 (Probable 28S ribosomal protein S25, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9N361])

HSP 1 Score: 116.316 bits (290), Expect = 2.942e-32
Identity = 64/174 (36.78%), Postives = 94/174 (54.02%), Query Frame = 2

Query:   95 MPFLKEGSKGIINTLKYLEAGKLYFKNNVKIFSMN-HIPDVEISEGANNFLTWKVPQLQFKNPKVQVITYRNMAPTPFIKCYLDNAEEILIDVSFRDHNEIEDHLLKIICKTKEMLLEEEIQNQVLINPANFGRKYPRQCMCEIYGQVRCPSRYGRPKAFEETITSKCSLNGNF 613
            MPF+  GS  +  T  YL+ GK+  ++NV +FSM  H        GA +F+ W   QLQ+ NPKVQ++ + +   TPF + YL++  E+L D+      EIE  L K + KT+ +   E +++   +NPA+FG K  RQCMCE+ GQ  C      P    + +T K   N N 
Sbjct:    1 MPFM-HGSMPLRRTFFYLQQGKVKLRDNVNVFSMGFHKNPTPEQSGARDFVYWNWAQLQYHNPKVQLVKHADKVVTPFARAYLNDGREVLFDLDGMKREEIEKLLAKTLGKTELVERREHLESIAKLNPADFGSKNERQCMCEVQGQHPCTGLLRAP----QCVTGKYRWNHNL 169

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Query:   95 MPFLKEGSKGIINTLKYLEAGKLYFKNNVKIFSMN-HIPDVEISEGANNFLTWKVPQLQFKNPKVQVITYRNMAPTPFIKCYLDNAEEILIDVSFRDHNEIEDHLLKIICKTKEMLLEEEIQNQVLINPANFGRKYPRQCMCEIYGQVRCPSRYGRPKAFEETITSKCSLNGNF 613
            MPF+  GS  +  T  YL+ GK+  ++NV +FSM  H        GA +F+ W   QLQ+ NPKVQ++ + +   TPF + YL++  E+L D+      EIE  L K + KT+ +   E +++   +NPA+FG K  RQCMCE+ GQ  C      P    + +T K   N N 
Sbjct:    1 MPFM-HGSMPLRRTFFYLQQGKVKLRDNVNVFSMGFHKNPTPEQSGARDFVYWNWAQLQYHNPKVQLVKHADKVVTPFARAYLNDGREVLFDLDGMKREEIEKLLAKTLGKTELVERREHLESIAKLNPADFGSKNERQCMCEVQGQHPCTGLLRAP----QCVTGKYRWNHNL 169

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BLAST of 28S ribosomal protein S25 mitochondrial vs. Ensembl Fly
Match: mRpS25 (gene:FBgn0030572 transcript:FBtr0073945)

HSP 1 Score: 158.303 bits (399), Expect = 1.724e-48
Identity = 78/163 (47.85%), Postives = 106/163 (65.03%), Query Frame = 2

Query:   95 MPFLKEGSKGIINTLKYLEAGKLYFKNNVKIFSMNHIPDVEISEGANNFLTWKVPQLQFKNPKVQVITYRNMAPTPFIKCYLDNAEEILIDVSFRDHNEIEDHLLKIICKTKEMLLEEEIQNQVLINPANFGRKYPRQCMCEIYGQVRCPSRYGRPKAFEETI 583
            MPF+K G + I  TLKYL AGKL  K+ V+IFS+N+        GA +F+ W +PQ+QFKNP+VQV+T +NM P+PF++CY D+  ++LID+  R+ N+I DHL+K++ KT+E L  EE   +   NPANFG    R C+CEI GQV CP     P      I
Sbjct:    1 MPFMK-GREPIRRTLKYLNAGKLVLKDKVRIFSVNYNTYGAHHAGARDFVFWNIPQIQFKNPEVQVLTLKNMTPSPFVRCYFDDGRDMLIDLDSRNRNDIIDHLVKVVGKTREQLDAEERLKESKDNPANFGYGCGRHCICEIPGQVPCPGTVPLPDHMRGKI 162

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BLAST of 28S ribosomal protein S25 mitochondrial vs. Ensembl Zebrafish
Match: mrps25 (mitochondrial ribosomal protein S25 [Source:ZFIN;Acc:ZDB-GENE-050417-52])

HSP 1 Score: 140.969 bits (354), Expect = 1.680e-41
Identity = 67/169 (39.64%), Postives = 109/169 (64.50%), Query Frame = 2

Query:  110 EGSKGIINTLKYLEAGKLYFKNNVKIFSMNHIPDVEISEGANNFLTWKVPQLQFKNPKVQVITYRNMAPTPFIKCYLDNAEEILIDVSFRDHNEIEDHLLKIICKTKEMLLEEEIQNQVLINPANFGRK--YPRQCMCEIYGQVRCPSRYGRPKAFEETITSKCSLNGN 610
            +G   I  TL+YL+ G++ FK +V+I ++N+    ++SEGA +F+ +K+PQ+Q++NP VQ++ ++NM P+PF++ YLD+ E++L+DV  + + EI +H+ KI+ KT E+L  E      L NPANFG K  + R+CM E+ GQV  P R   PK       +K +   +
Sbjct:    4 KGRFPIRRTLEYLQKGEVVFKKSVRIMTVNYNTHGDLSEGARSFVFFKIPQIQYRNPWVQIMMFKNMTPSPFLRFYLDDGEQVLVDVEGKHYKEITEHVKKILGKTDEVLQAEAAAKMELFNPANFGPKKYFLRECMSEVEGQVPHPGRVPLPKEMTGKYKAKMAATAD 172

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BLAST of 28S ribosomal protein S25 mitochondrial vs. Ensembl Xenopus
Match: azi2 (5-azacytidine induced 2 [Source:Xenbase;Acc:XB-GENE-981676])

HSP 1 Score: 149.828 bits (377), Expect = 8.666e-45
Identity = 73/154 (47.40%), Postives = 109/154 (70.78%), Query Frame = 2

Query:  110 EGSKGIINTLKYLEAGKLYFKNNVKIFSMNHIPDVEISEGANNFLTWKVPQLQFKNPKVQVITYRNMAPTPFIKCYLDNAEEILIDVSFRDHNEIEDHLLKIICKTKEMLLEEEIQNQVLINPANFG-RKYP-RQCMCEIYGQVRCPSRYGRPK 565
            +G   I  TL+YL+AG++ FKNNVKI ++N+  + E+ EGA  F+ + +PQ+Q+KNP VQ++ ++NM P+PF++ YLD+ E++L+D+  + + EI  H+ KI+ KT+E L  EE    V  NPANFG RKY  R+C+CE+ GQV CPS+   PK
Sbjct:    4 KGRFPIRRTLQYLQAGEIMFKNNVKIMTVNYNTNGELGEGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDSGEQVLVDIEDKSNTEIVQHVKKILGKTEETLRAEEQAKMVKSNPANFGLRKYHLRECICEVEGQVPCPSKVPLPK 157

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BLAST of 28S ribosomal protein S25 mitochondrial vs. Ensembl Mouse
Match: Mrps25 (mitochondrial ribosomal protein S25 [Source:MGI Symbol;Acc:MGI:1928140])

HSP 1 Score: 124.79 bits (312), Expect = 2.650e-35
Identity = 73/169 (43.20%), Postives = 110/169 (65.09%), Query Frame = 2

Query:  110 EGSKGIINTLKYLEAGKLYFKNNVKIFSMNHIPDVEISEGANNFLTWKVPQLQFKNPKVQVITYRNMAPTPFIKCYLDNAEEILIDVSFRDHNEIEDHLLKIICKTKEMLLEEEIQNQVLINPANFG-RKY-PRQCMCEIYGQVRCPSRYGRPKAFEETITSKCSLNGN 610
            +G   I  TL+YL  G + FK +VKI ++N+    E+ EGA  F+ + +PQ+Q+KNP VQ++ ++NM P+PF++ YLD+ E++L+DV  + + EI +H+ KI+ K +E L EEE++ Q   +P NFG RKY  R+CMCE+ GQV CP     PK  E T   K +L  +
Sbjct:    4 KGRFPIRRTLQYLGRGDVVFKESVKIMTVNYNTYGELGEGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIKKILGKKEETLREEELEKQQRFHPGNFGPRKYCLRECMCEVEGQVPCPGLVPLPK--EMTGKYKAALKAS 170

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BLAST of 28S ribosomal protein S25 mitochondrial vs. UniProt/SwissProt
Match: sp|Q9VY28|RT25_DROME (Probable 28S ribosomal protein S25, mitochondrial OS=Drosophila melanogaster OX=7227 GN=mRpS25 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.728e-47
Identity = 78/163 (47.85%), Postives = 106/163 (65.03%), Query Frame = 2

Query:   95 MPFLKEGSKGIINTLKYLEAGKLYFKNNVKIFSMNHIPDVEISEGANNFLTWKVPQLQFKNPKVQVITYRNMAPTPFIKCYLDNAEEILIDVSFRDHNEIEDHLLKIICKTKEMLLEEEIQNQVLINPANFGRKYPRQCMCEIYGQVRCPSRYGRPKAFEETI 583
            MPF+K G + I  TLKYL AGKL  K+ V+IFS+N+        GA +F+ W +PQ+QFKNP+VQV+T +NM P+PF++CY D+  ++LID+  R+ N+I DHL+K++ KT+E L  EE   +   NPANFG    R C+CEI GQV CP     P      I
Sbjct:    1 MPFMK-GREPIRRTLKYLNAGKLVLKDKVRIFSVNYNTYGAHHAGARDFVFWNIPQIQFKNPEVQVLTLKNMTPSPFVRCYFDDGRDMLIDLDSRNRNDIIDHLVKVVGKTREQLDAEERLKESKDNPANFGYGCGRHCICEIPGQVPCPGTVPLPDHMRGKI 162

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BLAST of 28S ribosomal protein S25 mitochondrial vs. UniProt/SwissProt
Match: sp|P82669|RT25_BOVIN (28S ribosomal protein S25, mitochondrial OS=Bos taurus OX=9913 GN=MRPS25 PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 3.011e-38
Identity = 65/154 (42.21%), Postives = 105/154 (68.18%), Query Frame = 2

Query:  110 EGSKGIINTLKYLEAGKLYFKNNVKIFSMNHIPDVEISEGANNFLTWKVPQLQFKNPKVQVITYRNMAPTPFIKCYLDNAEEILIDVSFRDHNEIEDHLLKIICKTKEMLLEEEIQNQVLINPANFG-RKY-PRQCMCEIYGQVRCPSRYGRPK 565
            +G   I  TL+YL  G + FK++VK+ ++N+    E+ EGA  F+ + +PQ+Q+KNP VQ++ ++NM PTPF++ YLD+ E++L+DV  + + EI +H+ KI+ K +E L  E  + + L +PA+FG RKY  R+C+CE+ GQV CP+    P+
Sbjct:    4 KGRFPIRRTLQYLSQGDVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKNPWVQIMLFKNMTPTPFLRFYLDSGEQVLVDVETKSNKEIMEHVKKILGKNEETLRRERQEREQLSHPAHFGPRKYCLRECICEVEGQVPCPAVVPLPR 157

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BLAST of 28S ribosomal protein S25 mitochondrial vs. UniProt/SwissProt
Match: sp|P82663|RT25_HUMAN (28S ribosomal protein S25, mitochondrial OS=Homo sapiens OX=9606 GN=MRPS25 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.337e-36
Identity = 69/154 (44.81%), Postives = 107/154 (69.48%), Query Frame = 2

Query:  110 EGSKGIINTLKYLEAGKLYFKNNVKIFSMNHIPDVEISEGANNFLTWKVPQLQFKNPKVQVITYRNMAPTPFIKCYLDNAEEILIDVSFRDHNEIEDHLLKIICKTKEMLLEEEIQNQVLINPANFG-RKY-PRQCMCEIYGQVRCPSRYGRPK 565
            +G   I  TL+YL  G + FK++VK+ ++N+    E+ EGA  F+ + +PQ+Q+KNP VQ++ ++NM P+PF++ YLD+ E++L+DV  + + EI +H+ KI+ K +E L EEE + + L +PANFG RKY  R+C+CE+ GQV CPS    PK
Sbjct:    4 KGRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIRKILGKNEETLREEEEEKKQLSHPANFGPRKYCLRECICEVEGQVPCPSLVPLPK 157

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BLAST of 28S ribosomal protein S25 mitochondrial vs. UniProt/SwissProt
Match: sp|Q4QR80|RT25_RAT (28S ribosomal protein S25, mitochondrial OS=Rattus norvegicus OX=10116 GN=Mrps25 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 5.271e-35
Identity = 72/169 (42.60%), Postives = 111/169 (65.68%), Query Frame = 2

Query:  110 EGSKGIINTLKYLEAGKLYFKNNVKIFSMNHIPDVEISEGANNFLTWKVPQLQFKNPKVQVITYRNMAPTPFIKCYLDNAEEILIDVSFRDHNEIEDHLLKIICKTKEMLLEEEIQNQVLINPANFG-RKY-PRQCMCEIYGQVRCPSRYGRPKAFEETITSKCSLNGN 610
            +G   I  TL+YL +G + FK +VK+ ++N+    E+ EGA  F+ + +PQ+Q+KNP VQ++ ++NM P+PF++ YL++ E++L+DV  + + EI +H+ KI+ K +E L EEE++ Q   +P NFG RKY  R+CMCE+ GQV CP     PK  E T   K +L  N
Sbjct:    4 KGRFPIRRTLQYLGSGDVVFKESVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKNPWVQIMLFKNMTPSPFLRFYLESGEQVLVDVETKSNTEIVEHIKKILGKKEETLREEELEKQQRFHPGNFGPRKYCLRECMCEVEGQVPCPGLVPLPK--EMTGKYKAALKAN 170

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BLAST of 28S ribosomal protein S25 mitochondrial vs. UniProt/SwissProt
Match: sp|Q9D125|RT25_MOUSE (28S ribosomal protein S25, mitochondrial OS=Mus musculus OX=10090 GN=Mrps25 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.854e-34
Identity = 73/169 (43.20%), Postives = 110/169 (65.09%), Query Frame = 2

Query:  110 EGSKGIINTLKYLEAGKLYFKNNVKIFSMNHIPDVEISEGANNFLTWKVPQLQFKNPKVQVITYRNMAPTPFIKCYLDNAEEILIDVSFRDHNEIEDHLLKIICKTKEMLLEEEIQNQVLINPANFG-RKY-PRQCMCEIYGQVRCPSRYGRPKAFEETITSKCSLNGN 610
            +G   I  TL+YL  G + FK +VKI ++N+    E+ EGA  F+ + +PQ+Q+KNP VQ++ ++NM P+PF++ YLD+ E++L+DV  + + EI +H+ KI+ K +E L EEE++ Q   +P NFG RKY  R+CMCE+ GQV CP     PK  E T   K +L  +
Sbjct:    4 KGRFPIRRTLQYLGRGDVVFKESVKIMTVNYNTYGELGEGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIKKILGKKEETLREEELEKQQRFHPGNFGPRKYCLRECMCEVEGQVPCPGLVPLPK--EMTGKYKAALKAS 170

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BLAST of 28S ribosomal protein S25 mitochondrial vs. TrEMBL
Match: A0A0R3X0X5 (L51_S25_CI-B8 domain-containing protein OS=Hydatigena taeniaeformis OX=6205 GN=TTAC_LOCUS6799 PE=4 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.538e-54
Identity = 77/160 (48.12%), Postives = 113/160 (70.62%), Query Frame = 2

Query:   95 MPFLKEGSKGIINTLKYLEAGKLYFKNNVKIFSMNHIPDVEISEGANNFLTWKVPQLQFKNPKVQVITYRNMAPTPFIKCYLDNAEEILIDVSFRDHNEIEDHLLKIICKTKEMLLEEEIQNQVLINPANFGRKYPRQCMCEIYGQVRCPSRYGRPKAFE 574
            MP L+ G   +  T KYL+AG++ F+ N+K+  +N +   +ISEGA  F+ W +P LQ+KNP VQ++T+R++ PTPFIK YL +  E+ +D SF   + I+DH+  +  KT E +  EE++NQ ++NPANFG KYPRQC+CE+YGQV C S+ GRP+ +E
Sbjct:    1 MPLLRGGRYAVTRTKKYLDAGRIIFRENIKVMIINTLSQGKISEGAREFIRWHLPPLQYKNPDVQIVTFRDICPTPFIKFYLSDGRELDVDCSFHTADSIQDHIAAVYAKTYETIKREEVENQKIVNPANFGAKYPRQCICEVYGQVPCSSQQGRPRPWE 160

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BLAST of 28S ribosomal protein S25 mitochondrial vs. TrEMBL
Match: A0A0X3P8S9 (28S ribosomal protein S25 OS=Schistocephalus solidus OX=70667 GN=RT25 PE=4 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.444e-53
Identity = 77/159 (48.43%), Postives = 111/159 (69.81%), Query Frame = 2

Query:   95 MPFLKEGSKGIINTLKYLEAGKLYFKNNVKIFSMNHIPDVEISEGANNFLTWKVPQLQFKNPKVQVITYRNMAPTPFIKCYLDNAEEILIDVSFRDHNEIEDHLLKIICKTKEMLLEEEIQNQVLINPANFGRKYPRQCMCEIYGQVRCPSRYGRPKAF 571
            MP LK G   +  T KYL+AG++ F+ N+KI ++N +   EISEGA  F+ W +PQLQ+KNP VQ++T++++ PTP ++ YL +  +  +D SFR  + IE H+ ++  K+ E L  EE++ Q L+NPANFG KYPRQCMCE+YGQ  C SR G+PK +
Sbjct:    1 MPLLKGGRYAVTRTKKYLDAGRIIFRENIKIMTINTLSKGEISEGAREFIRWYLPQLQYKNPSVQIVTFQDICPTPSLQFYLADGRDYTMDCSFRSADNIEAHIARVCAKSSETLKMEEVEKQQLVNPANFGTKYPRQCMCEVYGQAPCSSRQGKPKPW 159

[Close]

BLAST of 28S ribosomal protein S25 mitochondrial vs. TrEMBL
Match: A0A0R3SHA2 (L51_S25_CI-B8 domain-containing protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS4315 PE=4 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.761e-53
Identity = 78/160 (48.75%), Postives = 111/160 (69.38%), Query Frame = 2

Query:   95 MPFLKEGSKGIINTLKYLEAGKLYFKNNVKIFSMNHIPDVEISEGANNFLTWKVPQLQFKNPKVQVITYRNMAPTPFIKCYLDNAEEILIDVSFRDHNEIEDHLLKIICKTKEMLLEEEIQNQVLINPANFGRKYPRQCMCEIYGQVRCPSRYGRPKAFE 574
            MP LK G   +  T KYL+AG++ F+ N+K+ ++N +    ISEGA  F+ W +P LQ+KNP VQ++T++++ PTPFI  YL +  E  +D SFR  + I +H+  I  KT + + +EE++NQ +INPANFG KYPRQC+CEI+GQV C S  GRPK +E
Sbjct:    1 MPLLKGGRYAVTRTKKYLDAGRIIFRENIKVVAINTVSKGNISEGAREFIRWHLPPLQYKNPSVQIVTFQDICPTPFITFYLSDGREFKVDCSFRTADSIHNHIAGICAKTPDTIKKEEVENQQIINPANFGTKYPRQCICEIFGQVPCSSAIGRPKPWE 160

[Close]

BLAST of 28S ribosomal protein S25 mitochondrial vs. TrEMBL
Match: U6JHA1 (28S ribosomal protein S25 OS=Echinococcus granulosus OX=6210 GN=EGR_09319 PE=4 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 3.286e-53
Identity = 79/160 (49.38%), Postives = 111/160 (69.38%), Query Frame = 2

Query:   95 MPFLKEGSKGIINTLKYLEAGKLYFKNNVKIFSMNHIPDVEISEGANNFLTWKVPQLQFKNPKVQVITYRNMAPTPFIKCYLDNAEEILIDVSFRDHNEIEDHLLKIICKTKEMLLEEEIQNQVLINPANFGRKYPRQCMCEIYGQVRCPSRYGRPKAFE 574
            MP LK G   +  T KYL+AG++ F+ NVKI ++N +   EISEGA  F+ W +P LQ+KNP VQ++T R++ PTPFIK YL +  E  +D SF   + I+DH+  +  KT + +  EE++NQ ++NPANFG KYPRQC+CE+YGQV C S+ G+ K +E
Sbjct:    1 MPLLKGGRYAVTRTKKYLDAGRIIFRENVKIMAINTLSKGEISEGAREFIKWHLPPLQYKNPSVQIVTLRDICPTPFIKFYLSDGREFNVDCSFHTADSIQDHIALVCAKTYDTIKREEVENQKIVNPANFGSKYPRQCICEVYGQVPCSSQQGKSKPWE 160

[Close]

BLAST of 28S ribosomal protein S25 mitochondrial vs. TrEMBL
Match: A0A068Y149 (28S ribosomal protein S25 mitochondrial OS=Echinococcus multilocularis OX=6211 GN=EmuJ_000556300 PE=4 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 3.432e-53
Identity = 79/160 (49.38%), Postives = 111/160 (69.38%), Query Frame = 2

Query:   95 MPFLKEGSKGIINTLKYLEAGKLYFKNNVKIFSMNHIPDVEISEGANNFLTWKVPQLQFKNPKVQVITYRNMAPTPFIKCYLDNAEEILIDVSFRDHNEIEDHLLKIICKTKEMLLEEEIQNQVLINPANFGRKYPRQCMCEIYGQVRCPSRYGRPKAFE 574
            MP LK G   +  T KYL+AG++ F+ NVKI ++N +   EISEGA  F+ W +P LQ+KNP VQ++T R++ PTPFIK YL +  E  +D SF   + I+DH+  +  KT + +  EE++NQ ++NPANFG KYPRQC+CE+YGQV C S+ G+ K +E
Sbjct:    1 MPLLKGGRYAVTRTKKYLDAGRIIFRENVKIMAINTLSKGEISEGAREFIKWHLPPLQYKNPSVQIVTLRDICPTPFIKFYLSDGREFNVDCSFHTADSIQDHIALVCAKTYDTIKREEVENQKIVNPANFGSKYPRQCICEVYGQVPCSSQQGKSKPWE 160

[Close]

BLAST of 28S ribosomal protein S25 mitochondrial vs. Ensembl Cavefish
Match: mrps25 (mitochondrial ribosomal protein S25 [Source:NCBI gene;Acc:103045316])

HSP 1 Score: 134.42 bits (337), Expect = 4.522e-39
Identity = 64/160 (40.00%), Postives = 104/160 (65.00%), Query Frame = 2

Query:  125 IINTLKYLEAGKLYFKNNVKIFSMNHIPDVEISEGANNFLTWKVPQLQFKNPKVQVITYRNMAPTPFIKCYLDNAEEILIDVSFRDHNEIEDHLLKIICKTKEMLLEEEIQNQVLINPANFGRK--YPRQCMCEIYGQVRCPSRYGRPKAFEETITSKCS 598
            I  TL YL+ G++ FKN+VKI ++N+    ++SEGA  F+ + +PQ+Q+KNP VQ++ ++NM P+PF++ YLD+ E++L+DV  +D+ EI +H+ KI+ K+ ++L  E +      NPANFG K  + R+C+ E+ GQV  P     PK       +K +
Sbjct:    9 IRRTLDYLQRGEVVFKNSVKIMTVNYNTHGDLSEGARKFVFFSIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDDGEQVLMDVEGKDYKEISEHIRKILGKSTKVLQAEALAKMEASNPANFGPKKYFLRECISEVEGQVPHPGLVPLPKEMTGKYRAKMA 168

[Close]

BLAST of 28S ribosomal protein S25 mitochondrial vs. Ensembl Sea Lamprey
Match: ENSPMAT00000002027.1 (pep scaffold:Pmarinus_7.0:GL478223:530961:533794:-1 gene:ENSPMAG00000001827.1 transcript:ENSPMAT00000002027.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 144.05 bits (362), Expect = 1.760e-43
Identity = 69/159 (43.40%), Postives = 105/159 (66.04%), Query Frame = 2

Query:   95 MPFLKEGSKGIINTLKYLEAGKLYFKNNVKIFSMNHIPDVEISEGANNFLTWKVPQLQFKNPKVQVITYRNMAPTPFIKCYLDNAEEILIDVSFRDHNEIEDHLLKIICKTKEMLLEEEIQNQVLINPANFGR--KYPRQCMCEIYGQVRCPSRYGRPK 565
            MP +K G   +  TL YL+ G++ F++ VKI ++N+      S+G   F+ + VPQ+QFKNP VQ++ ++N+ P+PF++ YLD  E+IL+DV  + + EI  H+ K++ K+ E L E+E    VL NPANFGR  +Y R+C+CE+ GQV CP+    PK
Sbjct:    1 MPLMK-GRAAVRRTLDYLQRGEVIFRSAVKIMTINYNTSGTRSDGTRKFVFFTVPQIQFKNPWVQIVAFKNVTPSPFLRFYLDTGEQILVDVEDKTNQEITAHVKKLMGKSPEQLAEDERARLVLSNPANFGRNARYERKCLCEVEGQVPCPAIVPLPK 158

[Close]

BLAST of 28S ribosomal protein S25 mitochondrial vs. Ensembl Nematostella
Match: EDO42540 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S159])

HSP 1 Score: 86.2705 bits (212), Expect = 4.934e-21
Identity = 48/146 (32.88%), Postives = 83/146 (56.85%), Query Frame = 2

Query:  134 TLKYLEAGKLYFKNNVKIFSMNHIPDVEISEGANNFLTWKVPQLQFKNPKVQVITYRNMAPTPFIKCYLDNAEEILIDVSFRDHNEIEDHLLKIICKTK-EMLLEEEIQNQVLINPANFGRKYPRQCMCEIYGQVRCPSRYGRPKA 568
            TL++L AG++  K +V+   +++    E S+G  NF+   +PQ+Q+KN  VQ IT ++    P +  +  + +++++DV  +   EI +   K+   T+ E+ +  + +    INPANFG+     C+CEI GQ  CPSR   P+A
Sbjct:   11 TLEFLSAGRVVLKKDVRSVMLSYTHKYE-SKGLRNFIYKDLPQIQYKNNAVQFITAKDRTDFPTVDIFYGDGKKVMVDVENKKAPEILEIFSKVAGATESELQIRRQPKYLGRINPANFGKYGHMYCICEIPGQAPCPSRVPHPEA 155

[Close]

BLAST of 28S ribosomal protein S25 mitochondrial vs. Ensembl Medaka
Match: mrps25 (mitochondrial ribosomal protein S25 [Source:NCBI gene;Acc:101171002])

HSP 1 Score: 143.665 bits (361), Expect = 1.182e-42
Identity = 72/165 (43.64%), Postives = 106/165 (64.24%), Query Frame = 2

Query:  110 EGSKGIINTLKYLEAGKLYFKNNVKIFSMNHIPDVEISEGANNFLTWKVPQLQFKNPKVQVITYRNMAPTPFIKCYLDNAEEILIDVSFRDHNEIEDHLLKIICKTKEMLLEEEIQNQVLINPANFG-RKY-PRQCMCEIYGQVRCPSRYGRPKAFEETITSKCS 598
            +G   I  TL YL+ G + FKN VKI ++N+    E+SEGA  F+ + VPQ+Q+KNP VQ++ ++NM P+PF+K YLD+ E++L+DV  RDH +I  H+ KI+ K++++L  E        NPANFG +KY  R+C+CE+ GQV CP     PK       +K +
Sbjct:    4 KGRFPIRRTLDYLQKGDIIFKNRVKIMTVNYNTQGELSEGARKFVFFNVPQIQYKNPWVQIMMFKNMTPSPFLKFYLDDGEQVLVDVEGRDHKQISQHVKKILGKSEDVLYAEAQARMQASNPANFGPKKYCLRECICEVEGQVPCPGTTPLPKEMTGKYRAKMA 168

[Close]

BLAST of 28S ribosomal protein S25 mitochondrial vs. Planmine SMEST
Match: SMESG000054881.1 (SMESG000054881.1)

HSP 1 Score: 303.523 bits (776), Expect = 3.941e-106
Identity = 144/146 (98.63%), Postives = 146/146 (100.00%), Query Frame = 2

Query:  194 MNHIPDVEISEGANNFLTWKVPQLQFKNPKVQVITYRNMAPTPFIKCYLDNAEEILIDVSFRDHNEIEDHLLKIICKTKEMLLEEEIQNQVLINPANFGRKYPRQCMCEIYGQVRCPSRYGRPKAFEETITSKCSLNGNFSENAVQ 631
            MNHIPD+EISEGANNFLTWKVPQLQFKNPKVQVITYRNMAPTPFIKCYLDNAEEILIDVSFRDHNEIEDHLLKIICKTKE+LLEEEIQNQVLINPANFGRKYPRQCMCEIYGQVRCPSRYGRPKAFEETITSKCSLNGNFSENAVQ
Sbjct:    1 MNHIPDLEISEGANNFLTWKVPQLQFKNPKVQVITYRNMAPTPFIKCYLDNAEEILIDVSFRDHNEIEDHLLKIICKTKEILLEEEIQNQVLINPANFGRKYPRQCMCEIYGQVRCPSRYGRPKAFEETITSKCSLNGNFSENAVQ 146

[Close]

BLAST of 28S ribosomal protein S25 mitochondrial vs. Planmine SMEST
Match: SMESG000030095.1 (SMESG000030095.1)

HSP 1 Score: 299.671 bits (766), Expect = 1.151e-104
Identity = 143/146 (97.95%), Postives = 144/146 (98.63%), Query Frame = 2

Query:  194 MNHIPDVEISEGANNFLTWKVPQLQFKNPKVQVITYRNMAPTPFIKCYLDNAEEILIDVSFRDHNEIEDHLLKIICKTKEMLLEEEIQNQVLINPANFGRKYPRQCMCEIYGQVRCPSRYGRPKAFEETITSKCSLNGNFSENAVQ 631
            MNHIPDVEISEGANNFLTWKVPQLQFKNPKVQVITYRNMAPTPFIKCYLDNAEEILIDVSFRDHNEIEDHLLKIICKTKE+LLEEEIQNQVLINPANFGRKYPRQCMCEIYGQVRCPSRYGRPKAFEETITSKCSLN NFSEN VQ
Sbjct:    1 MNHIPDVEISEGANNFLTWKVPQLQFKNPKVQVITYRNMAPTPFIKCYLDNAEEILIDVSFRDHNEIEDHLLKIICKTKEILLEEEIQNQVLINPANFGRKYPRQCMCEIYGQVRCPSRYGRPKAFEETITSKCSLNENFSENVVQ 146

The following BLAST results are available for this feature:

BLAST of 28S ribosomal protein S25 mitochondrial vs. Ensembl Human
BLAST of 28S ribosomal protein S25 mitochondrial vs. Ensembl Celegans
BLAST of 28S ribosomal protein S25 mitochondrial vs. Ensembl Fly
BLAST of 28S ribosomal protein S25 mitochondrial vs. Ensembl Zebrafish
BLAST of 28S ribosomal protein S25 mitochondrial vs. Ensembl Xenopus
BLAST of 28S ribosomal protein S25 mitochondrial vs. Ensembl Mouse
BLAST of 28S ribosomal protein S25 mitochondrial vs. UniProt/SwissProt
BLAST of 28S ribosomal protein S25 mitochondrial vs. TrEMBL
BLAST of 28S ribosomal protein S25 mitochondrial vs. Ensembl Cavefish
BLAST of 28S ribosomal protein S25 mitochondrial vs. Ensembl Sea Lamprey
BLAST of 28S ribosomal protein S25 mitochondrial vs. Ensembl Yeast
BLAST of 28S ribosomal protein S25 mitochondrial vs. Ensembl Nematostella
BLAST of 28S ribosomal protein S25 mitochondrial vs. Ensembl Medaka
BLAST of 28S ribosomal protein S25 mitochondrial vs. Planmine SMEST

BLAST of 28S ribosomal protein S25 mitochondrial vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
MRPS25	4.866e-37	44.81	mitochondrial ribosomal protein S25 [Source:HGNC S...	[more]
MRPS25	1.432e-26	40.00	mitochondrial ribosomal protein S25 [Source:HGNC S...	[more]
MRPS25	2.224e-26	40.95	mitochondrial ribosomal protein S25 [Source:HGNC S...	[more]
MRPS25	2.224e-26	40.95	mitochondrial ribosomal protein S25 [Source:HGNC S...	[more]
MRPS25	2.755e-16	41.03	mitochondrial ribosomal protein S25 [Source:HGNC S...	[more]

BLAST of 28S ribosomal protein S25 mitochondrial vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 2


Match Name	E-value	Identity	Description
mrps-25	2.942e-32	36.78	Probable 28S ribosomal protein S25, mitochondrial ...	[more]
mrps-25	2.942e-32	36.78	Probable 28S ribosomal protein S25, mitochondrial ...	[more]

BLAST of 28S ribosomal protein S25 mitochondrial vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1


Match Name	E-value	Identity	Description
mRpS25	1.724e-48	47.85	gene:FBgn0030572 transcript:FBtr0073945	[more]

BLAST of 28S ribosomal protein S25 mitochondrial vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1


Match Name	E-value	Identity	Description
mrps25	1.680e-41	39.64	mitochondrial ribosomal protein S25 [Source:ZFIN;A...	[more]

BLAST of 28S ribosomal protein S25 mitochondrial vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1


Match Name	E-value	Identity	Description
azi2	8.666e-45	47.40	5-azacytidine induced 2 [Source:Xenbase;Acc:XB-GEN...	[more]

BLAST of 28S ribosomal protein S25 mitochondrial vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 1


Match Name	E-value	Identity	Description
Mrps25	2.650e-35	43.20	mitochondrial ribosomal protein S25 [Source:MGI Sy...	[more]

BLAST of 28S ribosomal protein S25 mitochondrial vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q9VY28\|RT25_DROME	1.728e-47	47.85	Probable 28S ribosomal protein S25, mitochondrial ...	[more]
sp\|P82669\|RT25_BOVIN	3.011e-38	42.21	28S ribosomal protein S25, mitochondrial OS=Bos ta...	[more]
sp\|P82663\|RT25_HUMAN	2.337e-36	44.81	28S ribosomal protein S25, mitochondrial OS=Homo s...	[more]
sp\|Q4QR80\|RT25_RAT	5.271e-35	42.60	28S ribosomal protein S25, mitochondrial OS=Rattus...	[more]
sp\|Q9D125\|RT25_MOUSE	1.854e-34	43.20	28S ribosomal protein S25, mitochondrial OS=Mus mu...	[more]

BLAST of 28S ribosomal protein S25 mitochondrial vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0R3X0X5	2.538e-54	48.13	L51_S25_CI-B8 domain-containing protein OS=Hydatig...	[more]
A0A0X3P8S9	1.444e-53	48.43	28S ribosomal protein S25 OS=Schistocephalus solid...	[more]
A0A0R3SHA2	2.761e-53	48.75	L51_S25_CI-B8 domain-containing protein OS=Hymenol...	[more]
U6JHA1	3.286e-53	49.38	28S ribosomal protein S25 OS=Echinococcus granulos...	[more]
A0A068Y149	3.432e-53	49.38	28S ribosomal protein S25 mitochondrial OS=Echinoc...	[more]

BLAST of 28S ribosomal protein S25 mitochondrial vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1


Match Name	E-value	Identity	Description
mrps25	4.522e-39	40.00	mitochondrial ribosomal protein S25 [Source:NCBI g...	[more]

BLAST of 28S ribosomal protein S25 mitochondrial vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1


Match Name	E-value	Identity	Description
ENSPMAT00000002027.1	1.760e-43	43.40	pep scaffold:Pmarinus_7.0:GL478223:530961:533794:-...	[more]

BLAST of 28S ribosomal protein S25 mitochondrial vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of 28S ribosomal protein S25 mitochondrial vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1


Match Name	E-value	Identity	Description
EDO42540	4.934e-21	32.88	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of 28S ribosomal protein S25 mitochondrial vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1


Match Name	E-value	Identity	Description
mrps25	1.182e-42	43.64	mitochondrial ribosomal protein S25 [Source:NCBI g...	[more]

BLAST of 28S ribosomal protein S25 mitochondrial vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2


Match Name	E-value	Identity	Description
SMESG000054881.1	3.941e-106	98.63	SMESG000054881.1	[more]
SMESG000030095.1	1.151e-104	97.95	SMESG000030095.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30004940 ID=SMED30004940|Name=28S ribosomal protein S25 mitochondrial|organism=Schmidtea mediterranea sexual|type=transcript|length=749bp
GTTAAAGCTAGTTTTTGAATATTTAAATAATTTATCAATATTTTAAATAC
AATTTAATATTGTTTCTGTAATCACCTAAAATAAGTTATTAAGCATGCCT
TTTTTGAAGGAAGGATCAAAGGGTATAATTAACACTTTAAAATATTTAGA
AGCTGGAAAATTGTATTTTAAAAATAACGTAAAAATATTTAGTATGAATC
ATATTCCTGACGTAGAAATATCCGAAGGAGCAAATAATTTCTTAACATGG
AAAGTTCCTCAATTACAATTCAAAAATCCCAAAGTTCAAGTTATAACTTA
TCGCAACATGGCACCAACACCATTTATTAAATGCTATTTAGATAACGCCG
AAGAAATATTAATTGATGTTTCTTTTCGTGACCATAATGAAATTGAAGAT
CATTTATTAAAAATTATTTGCAAAACCAAAGAAATGCTTCTCGAAGAAGA
AATTCAAAACCAAGTCCTAATAAACCCAGCAAATTTTGGTCGGAAATATC
CCCGGCAGTGTATGTGTGAAATTTACGGCCAAGTTCGCTGTCCGTCAAGA
TACGGTCGGCCCAAAGCATTCGAAGAAACTATTACTTCCAAATGTTCTTT
AAATGGAAATTTTTCTGAGAACGCCGTTCAATAATAATTCATTTTTTCTC
TTATTTATTAATTAGTATTTATAAAACATTTTCTTTGTAAATTTGATTCT
GGATTTTAAATATTTTTATTTTTCTGGGATTTTTAATGTTAAAAAAAAT

protein sequence of SMED30004940-orf-1

>SMED30004940-orf-1 ID=SMED30004940-orf-1|Name=SMED30004940-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=180bp
MPFLKEGSKGIINTLKYLEAGKLYFKNNVKIFSMNHIPDVEISEGANNFL
TWKVPQLQFKNPKVQVITYRNMAPTPFIKCYLDNAEEILIDVSFRDHNEI
EDHLLKIICKTKEMLLEEEIQNQVLINPANFGRKYPRQCMCEIYGQVRCP
SRYGRPKAFEETITSKCSLNGNFSENAVQ*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **molecular function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **cellular component**
Term	Definition
GO:0005739	mitochondrion
GO:0005840	ribosome

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000026	gut
PLANA:0002032	epidermal cell
PLANA:0002109	X1 cell

Vocabulary: **INTERPRO**
Term	Definition
IPR040049	MRPS25
IPR036249	Thioredoxin-like_sf
IPR007741	Ribosome/NADH_DH
IPR012336	Thioredoxin-like_fold

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007741	Ribosomal protein/NADH dehydrogenase domain	SMART	SM00916	L51_S25_CI_B8_2	coord: 41..111 e-value: 2.7E-11 score: 53.5
IPR007741	Ribosomal protein/NADH dehydrogenase domain	PFAM	PF05047	L51_S25_CI-B8	coord: 46..96 e-value: 5.2E-8 score: 32.7
IPR040049	28S ribosomal protein S25, mitochondrial	PANTHER	PTHR13274	MITOCHONDRIAL RIBOSOMAL PROTEIN S25	coord: 1..161
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	SSF52833	Thioredoxin-like	coord: 41..107

Main menu

28S ribosomal protein S25 mitochondrial

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 6

Owlery

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